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Dear all,
I have a multisample exome vcf file. Exome sequences were obtained with SureSelect Exome V6.
I would like to infer the ethnicity with EthSeq. However I am not sure which reference vcf (or gds file) should I use. I have used those implemented in the R package. However obtained results where far from perfect given the fact that a bunch of samples belong to gnomAD_AMR population. I have read the fact that some sequences could be formatted as a reference model with ethseq.RM. However I don't know which ones should I use as a reference.
Any advice will be really appreciated.
Regards,
The text was updated successfully, but these errors were encountered:
Dear all,
I have a multisample exome vcf file. Exome sequences were obtained with SureSelect Exome V6.
I would like to infer the ethnicity with EthSeq. However I am not sure which reference vcf (or gds file) should I use. I have used those implemented in the R package. However obtained results where far from perfect given the fact that a bunch of samples belong to gnomAD_AMR population. I have read the fact that some sequences could be formatted as a reference model with ethseq.RM. However I don't know which ones should I use as a reference.
Any advice will be really appreciated.
Regards,
The text was updated successfully, but these errors were encountered: