BibFile.bib

@phdthesis{Abrams2014,
author = {Abrams, J.L.},
file = {:C$\backslash$:/Users/melissa.monk/Desktop/Abrams thesis/Abrams\_Jeff\_Sp2014.pdf:pdf},
pages = {148},
school = {Humboldt State University},
title = {{The effect of local fishing pressure on the size and age structure of fishes associated with rocky habitats along California's north coast}},
year = {2014}
}
@article{Alverson1964,
author = {Alverson, D L and Pruter, a T and Ronholt, L L},
journal = {Institute of Fisheries, University of British Columbia},
keywords = {ABUNDANCE,BENTHOS,COASTAL WATERS,COMMUNITIES,DESCRIPTIONS,DISTRIBUTION,EASTERN CENTRAL PACIFIC,EASTERN PACIFIC,ECOLOGY,EXPLOITATION,FISH,FISHERY,HISTORY,NORTHEAST PACIFIC,PACIFIC,RESEARCH,SURVEY,VERTEBRATES},
pmid = {3109042},
title = {{A Study of Demersal Fishes and Fisheries of the Northeastern Pacific Ocean}},
year = {1964}
}
@phdthesis{Anderson1983,
author = {Anderson, TW},
school = {Fresno State University},
title = {{Identification and development of nearshore juvenile rockfishes (genus \emph{Sebastes}) in central California kelp forests}},
type = {Masters Thesis},
year = {1983}
}
@article{Beamish1979,
author = {Beamish, RJ},
journal = {Journal of the Fisheries Board of Canada},
pages = {1395--1400},
title = {{New information on the longevity of Pacific ocean perch (\emph{Sebastes alutus})}},
volume = {36},
year = {1979}
}
@article{Bodkin1986,
author = {Bodkin, JL},
file = {:C$\backslash$:/Users/melissa.monk/Desktop/TEMP/bodkin1986.pdf:pdf},
journal = {Fishery Bulletin},
pages = {799--808},
title = {{Fish assemblages in \emph{Macrocystis} and \emph{Nereocystis} kelp forests off central California.}},
volume = {84},
year = {1986}
}
@article{Botsford2002,
author = {Botsford, LW and Lawrence, CA},
file = {:C$\backslash$:/Users/melissa.monk/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Botsford, Lawrence - 2002 - Patterns of co-variability among California Current chinook salmon, coho salmon, Dungeness crab, and physica.pdf:pdf},
journal = {Progress in Oceanography},
pages = {283--305},
title = {{Patterns of co-variability among California Current chinook salmon, coho salmon, Dungeness crab, and physical oceanographic conditions}},
volume = {53},
year = {2002}
}
@article{Buckley1967,
author = {Buckley, R.M.},
journal = {Supplemental progress report. Department of Fisheries. State of Washington.},
title = {{1965 bottomfish sport fishery. Sport fishery investigations 1965}},
year = {1967}
}
@article{Buonaccorsi2002,
author = {Buonaccorsi, VP},
journal = {Canadian Journal of Fisheries and Aquatic Sciences},
pages = {1374--1384},
title = {{Population structure of copper rockfish (\emph{Sebastes caurinus}) reflects postglacial colonization and contemporary patterns of larval dispersal}},
volume = {59},
year = {2002}
}
@article{Buonaccorsi2004,
author = {Buonaccorsi, VP and Westerman, M and Stannard, J},
journal = {Marine Biology},
pages = {779--788},
title = {{Molecular genetic structure suggests limited larval dispersal in grass rockfish, \emph{Sebastes rastrelliger}}},
volume = {145},
year = {2004}
}
@article{Burford2008,
author = {Burford, MO and Bernardi, G},
file = {:C$\backslash$:/Users/melissa.monk/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Burford, Bernardi - 2008 - Incipient speciation within a subgenus of rockfish (Sebastosomus) provides evidence of recent radiations with.pdf:pdf},
journal = {Marine Biology},
pages = {701--717},
title = {{Incipient speciation within a subgenus of rockfish (\emph\{Sebastosomus}) provides evidence of recent radiations within an ancient species flock}},
volume = {154},
year = {2008}
}
@article{Burton1998,
author = {Burton, RS},
journal = {Evolution},
pages = {734--745},
title = {{Intraspecific phylogeography across the Point Conception biogeographic boundary}},
url = {http://www.jstor.org/stable/2411268},
volume = {52},
year = {1998}
}
@article{Carlson1981,
author = {Carlson, HR and Straty, RR},
file = {:C$\backslash$:/Users/melissa.monk/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Carlson, Straty - 1981 - Habitat and nursery grounds of Pacific rockfish, Sebastes spp., in rocky coastal areas of southeastern Alaska.pdf:pdf},
journal = {Marine Fisheries Review},
number = {7},
pages = {13--19},
title = {{Habitat and nursery grounds of Pacific rockfish, \emph\{Sebastes} spp., in rocky coastal areas of southeastern Alaska}},
url = {http://www.nativefishlab.net/library/textpdf/17424.pdf},
volume = {43},
year = {1981}
}
@article{CalCOFI2002,
author = {CDFG},
journal = {California Cooperative Oceanic Fisheries Investigations Reports},
keywords = {China2015},
mendeley-tags = {China2015},
pages = {13--30},
title = {{Review of Some California Fisheries for 2001: market squid, sea urchin, dungeness crab, lobster, prawn, abalone, groundfish, swordfish and shark, coastal pelagic finfish, ocean salmon, nearshore live-fish, Pacific herring, white seabass, and kelp}},
volume = {43},
year = {2002}
}
@article{Checkley2009,
author = {Checkley, DM and Barth, JA},
file = {:C$\backslash$:/Users/melissa.monk/Downloads/checkley\_barth\_09\_ccs\_pio.pdf:pdf},
journal = {Progress in Oceanography},
pages = {49--64},
title = {{Patterns and processes in the California Current System}},
volume = {83},
year = {2009}
}
@article{Cope2011,
abstract = {The Magnuson-Stevens Fishery Conservation and Management Act (MSA) requires active management of all stocks at risk of overfishing or otherwise in need of conservation and management. In the Pacific Fishery Management Council groundfish fishery management plan, about two-thirds of the more than 90 managed stocks are currently without traditional assessments to help define stock status in relation to management targets. Stock complexes are often employed for management purposes in such situations. The guidelines issued in response to the 2006 MSA amendments defined a complex as a group of stocks with similar geographic distributions, life histories, and vulnerabilities to fisheries. This work uses productivity-susceptibility analysis (PSA) to measure the vulnerabilities of 90 managed groundfish stocks, 64 of which are currently managed within stock complexes. These stock complexes are reevaluated by first using a partitioning cluster analysis to group the stocks by depth and latitude. Vulnerability reference points are then established based on the PSA results to determine vulnerability groups of low, medium, high, and major concern within each ecological group. This method is a simple and flexible approach to incorporating vulnerability measures into stock complex designations while providing information with which to prioritize stock- and complex-specific management.},
author = {Cope, Jason M and DeVore, John and Dick, E J and Ames, Kelly and Budrick, John and Erickson, Daniel L. and Grebel, Joanna and Hanshew, Gretchen and Jones, Robert and Mattes, Lynn and Niles, Corey and Williams, Sarah},
journal = {North American Journal of Fisheries Management},
pages = {589--604},
title = {{An approach to defining stock complexes for U.S. West Coast groundfishes using vulnerabilities and ecological distributions}},
volume = {31},
year = {2011}
}
@techreport{Cope2015,
address = {Portland, OR},
author = {Cope, Jason and Dick, E.J. and Maccall, Alec and Monk, Melissa and Soper, Braden and Wetzel, Chantell},
file = {:C$\backslash$:/Users/melissa.monk/Desktop/TEMP/Data-Moderate\_Assessments\_2013\_FINAL\_160116.pdf:pdf},
institution = {Pacific Fisheries Management Council},
keywords = {China2015},
mendeley-tags = {China2015},
pages = {298},
title = {{Data-moderate stock assessments for brown, China, copper, sharpchin, stripetail, and yellowtail rockfishes and English and rex soles in 2013}},
year = {2015}
}
@article{Cope2004,
author = {Cope, JM},
file = {:C$\backslash$:/Users/melissa.monk/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Cope - 2004 - Population genetics and phylogeography of the blue rockfish (Sebastes mystinus) from Washington to California.pdf:pdf},
journal = {Canadian Journal of Fisheries and Aquatic Sciences},
pages = {332--342},
title = {{Population genetics and phylogeography of the blue rockfish (Sebastes mystinus) from Washington to California}},
volume = {61},
year = {2004}
}
@misc{East2012,
author = {{Data East}},
title = {{XTools Pro for ArcGIS Desktop. 9.1 (Build 956): Data East, LLC.}},
url = {http://www.xtoolspro.com/},
year = {2012}
}
@article{Dawson2001,
author = {Dawson, MN},
journal = {Journal of Biogeography},
pages = {723--736},
title = {{Phylogeography in coastal marine animals: a solution from California?}},
url = {http://onlinelibrary.wiley.com/doi/10.1046/j.1365-2699.2001.00572.x/full},
volume = {28},
year = {2001}
}
@article{Dick2010,
abstract = {The Magnuson-Stevens Fishery Conservation and Management Reauthorization Act of 2006 requires$\backslash$nRegional Fishery Management Councils to set annual catch limits for all stocks or stock complexes in$\backslash$nFederal fishery management plans beginning in 2011. Most species listed in the Pacific Coast$\backslash$nGroundfish Fishery Management Plan have not been assessed, in large part due to data limitations.$\backslash$nEstimates of sustainable yield for many these species were previously based on undocumented, ad-hoc$\backslash$nanalyses. We present estimates of sustainable yield for 50 of these stocks using two recently developed$\backslash$nmodels designed to inform management of data-poor stocks. These models rely on recently$\backslash$nreconstructed time series of historical catch for west-coast groundfish species and species-specific$\backslash$ninformation related to stock productivity. For this set of data-poor stocks, recent landings statistics$\backslash$nreflect shifts in the relative importance of certain species to west-coast fisheries (e.g. increased catches$\backslash$nof nearshore and slope rockfish species relative to shelf species), largely due to recent regulatory$\backslash$nactions. We provide estimates of overfishing limits (OFLs) for each of the 50 stocks along with$\backslash$ncomparisons to recent catch levels. Our results suggest that status quo harvest levels range from light$\backslash$nexploitation of some stocks to potential overfishing of others. This information could help inform$\backslash$ndecisions regarding prioritization of future stock assessments for unassessed species. OFLs are$\backslash$nexpressed as probability distributions, reflecting our uncertainty in model parameters. We select median$\backslash$nvalues as point estimates of OFL, as this statistic is most consistent with National Standard 1 guidelines.},
author = {Dick, E J and MacCall, Alec D.},
file = {:C$\backslash$:/Users/melissa.monk/Desktop/TEMP/NOAA-TM-NMFS-SWFSC-460.pdf:pdf},
journal = {NOAA Technical Memorandum NMFS NOAA-TM-NMFS-SWFSC-460},
title = {{Estimates of sustainable yield for 50 data-poor stocks in the Pacific Coast Groundfish Fishery Management Plan}},
year = {2010}
}
@article{Dick2011,
abstract = {We describe a method for determining reasonable yield and management reference points for data-poor fisheries in cases where approximate catches are known from the beginning of exploitation. The method, called Depletion-Based Stock Reduction Analysis (DB-SRA), merges stochastic Stock-Reduction Analysis with Depletion-Corrected Average Catch. Data requirements include estimates of historical annual catches, approximate natural mortality rate and age at maturity. A production function is specified based on general fishery knowledge of the relative location of maximum productivity and the relationship of MSY fishing rate to the natural mortality rate. This leaves unfished biomass as the only unknown parameter, which can be estimated given a designated relative depletion level near the end of the time series. The method produces probability distributions of management reference points concerning yield and biomass. Uncertainties in natural mortality, stock dynamics, optimal harvest rates, and recent stock status are incorporated using Monte Carlo exploration. Comparison of model outputs to data-rich stock assessments suggests that the method is effective for estimating sustainable yields for data-poor stocks. ?? 2011.},
author = {Dick, E. J. and MacCall, Alec D.},
issn = {01657836},
journal = {Fisheries Research},
keywords = {Data-poor stock assessment,Depletion-Corrected Average Catch,Monte Carlo methods,Stochastic stock reduction analysis},
number = {2},
pages = {331--341},
title = {{Depletion-Based Stock Reduction Analysis: A catch-based method for determining sustainable yields for data-poor fish stocks}},
volume = {110},
year = {2011}
}
@phdthesis{Dick2009,
author = {Dick, E.J.},
school = {University of California Santa Cruz},
title = {{Modeling the reproductive potential of rockfishes (\emph{Sebastes} spp.)}},
type = {PhD Dissertation},
year = {2009}
}
@article{Douglas1998,
author = {Douglas, D.A.},
journal = {Oregon Deptartment of Fish and Wildlife. Marine Program Data Series Report.},
title = {{Species composition of rockfish catches by Oregon trawlers, 1963-93}},
year = {1998}
}
@article{Drake2013,
author = {Drake, PT and Edwards, CA},
file = {:C$\backslash$:/Users/melissa.monk/Desktop/TEMP/Drake2013.pdf:pdf},
journal = {Journal of Marine Research},
pages = {317--350},
title = {{Influence of larval behavior on transport and population connectivity in a realistic simulation of the California Current System}},
volume = {71},
year = {2013}
}
@article{Echeverria1987,
author = {Echeverria, T.W.},
file = {:C$\backslash$:/Users/melissa.monk/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Wur - 1987 - Thirty-four species of California rockfishes maturity and seasonality of reproduction(2).pdf:pdf},
journal = {Fishery Bulletin},
pages = {229--250},
title = {{Thirty-four species of California rockfishes: maturity and seasonality of reproduction}},
volume = {85},
year = {1987}
}
@article{Field2005,
author = {Field, JC and Ralston, S},
file = {:C$\backslash$:/Users/melissa.monk/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Field, Ralston - 2005 - Spatial variability in rockfish (Sebastes spp.) recruitment events in the California Current System.pdf:pdf},
journal = {Canadian Journal of Fisheries and Aquatic Sciences},
pages = {2199--2210},
title = {{Spatial variability in rockfish (Sebastes spp.) recruitment events in the California Current System}},
volume = {62},
year = {2005}
}
@article{Fisk1993,
author = {Fisk, MR and Duncan, RA and Fox, CG and Witter, JB},
journal = {Marine Geophysical Researches},
pages = {283--296},
title = {{Emergence and petrology of the Mendocino Ridge}},
volume = {15},
year = {1993}
}
@article{Francis2011,
author = {Francis, R.I.C.C.},
file = {:C$\backslash$:/Users/melissa.monk/Desktop/TEMP/CJFAS\_68\_1124-1138.pdf:pdf},
journal = {Canadian Journal of Fisheries and Aquatic Sciencies},
pages = {1124--1138},
title = {{Data weighting in statistical fisheries stock assessment models}},
volume = {68},
year = {2011}
}
@article{Francis2009,
author = {Francis, RC and Little, JE and Bloeser, JA},
file = {:C$\backslash$:/Users/melissa.monk/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Francis, Little, Bloeser - 2009 - Matching spatial scales of ecology, economy, and management for groundfish of the US West Coast marine.pdf:pdf},
journal = {A report to the Lensfest Ocean Program at The Pew Charitable Trust},
title = {{Matching spatial scales of ecology, economy, and management for groundfish of the U.S. West Coast marine ecosystem: a state of the science review}},
year = {2009}
}
@misc{Goldfinger2014,
author = {Goldfinger, Chris and Henkel, Sarah and Romsos, Chris and {Andrea Havron}, Brandi Black},
pages = {161},
publisher = {US Dept. of the Interior, Bureau of Ocean Energy Management, Pacific OCS Region. OCS Study BOEM 2014-662},
title = {{Benthic habitat characterization offshore the Pacific Northwest volume 1: evaluation of continental shelf feology}},
year = {2014}
}
@article{Gottscho2014,
author = {Gottscho, AD},
file = {:C$\backslash$:/Users/melissa.monk/Downloads/Gottscho.2014.pdf:pdf},
journal = {Biological Reviews},
pages = {1--21},
title = {{Zoogeography of the San Andreas Fault system: Great Pacific Fracture Zones correspond with spatially concordant phylogeographic boundaries in western North}},
volume = {2014},
year = {2014}
}
@article{Greene1999,
abstract = {A standard, universally useful classification scheme for deepwater habitats needs to be established so that descriptions of these habitats can be accurately and efficiently applied among scientific disciplines In recent years many marine benthic habitats in deep water have been described using geophysical and biological data. These descriptions can vary from one investigator to another, which makes it difficult to compare habitats and associated biological assemblages among geographic regions. Using geophysical data collected with a variety of remote sensor systems and in situ biological and geologic observations, we have constructed a classification scheme that can be used in describing marine benthic habitats in deep water.},
author = {Greene, H. Gary and Yoklavich, Mary M. and Starr, Richard M. and O'Connell, Victoria M. and Wakefield, W. Waldo and Sullivan, Deidre E. and McRea, James E. and Cailliet, Gregor M.},
journal = {Oceanologica Acta},
keywords = {Benthic,Fisheries management,Habitat,Universal classification},
pages = {663--678},
title = {{A classification scheme for deep seafloor habitats}},
volume = {22},
year = {1999}
}
@article{Hamel2015,
author = {Hamel, OS},
journal = {ICES Journal of Marine Science},
pages = {62--69},
title = {{A method for calculating a meta-analytical prior for the natural mortality rate using multiple life history correlates}},
volume = {72},
year = {2015}
}
@article{Hanan2012,
author = {Hanan, DA and Curry, BE},
file = {:C$\backslash$:/Users/melissa.monk/Desktop/TEMP/Hanan2012.pdf:pdf},
journal = {Open Fish Science Journal},
pages = {30--43},
title = {{Long-term movement patterns and habitat use of nearshore groundfish: tag-recapture in central and southern California waters}},
volume = {5},
year = {2012}
}
@article{Hannah2011a,
author = {Hannah, R.W. and Blume, M.T.O.},
file = {:C$\backslash$:/Users/melissa.monk/Desktop/TEMP/Quillback china RF maturity.pdf:pdf},
journal = {Oregon Department of Fish and Wildlife Information Reports Number 2011-01},
title = {{Maturity of female quillback (\emph\{Sebastes maliger}) and china rockfish (\emph{S. nebulosus}) from Oregon waters based on histological evaluation of ovaries}},
year = {2011}
}
@article{Hannah2011,
abstract = {We used acoustic telemetry techniques to study the movements of eight species of Pacific rockfish (genus Sebastes) inhabiting Siletz Reef, a high-relief rocky reef complex on the Oregon coast. Our primary interest was evaluating potential residence times for rockfish species in small, no-take marine protected areas (MPAs) like those recently designated for Oregon waters (337-1,502 ha). We tagged 6 black rockfish S. melanops, 31 canary rockfish S. pinniger, 9 yelloweye rockfish S. ruberrimus, 5 quillback rockfish S. maliger, and 2 copper rockfish S. caurinus, along with single specimens of china rockfish S. nebulosus, vermilion rockfish S. miniatus, and tiger rockfish S. nigrocinctus, and monitored their movements with a large (about 5,200-ha) receiver grid for over a year. Canary rockfish showed low site fidelity and wide-ranging movements that exceeded the scale of our detection grid and a wide range of vertical movements (up to 27 m). Quillback, vermilion, tiger, china, and some yelloweye rockfish showed high site fidelity, being detected only at one or two nearby receivers for a full year. The range of vertical movements of yelloweye, quillback, vermilion, and tiger rockfish was small, ranging from only 2-3 m for the single tiger rockfish to 3-13 m for four of the quillback rockfish. Black and copper rockfish showed site fidelity that was intermediate between that of canary rockfish and the other species. Black and copper rockfish showed a wide range in vertical movements (10-35 m and 2-33 m, respectively) within a month. Our results suggest that small, no-take MPAs located on high-relief rocky reefs would provide minimal protection for canary rockfish, some protection for black and copper rockfish, and greater protection for quillback, vermilion, tiger, and some yelloweye rockfish.},
author = {Hannah, Robert W and Rankin, Polly S},
file = {:C$\backslash$:/Users/melissa.monk/Desktop/TEMP/Hannah2011.pdf:pdf},
journal = {North American Journal of Fisheries Management},
pages = {483--494},
title = {{Site fidelity and movement of eight species of Pacific rockfish at a high-relief rocky reef on the Oregon coast}},
volume = {31},
year = {2011}
}
@article{Hannah2012,
author = {Hannah, RW and Blume, MTO},
file = {:C$\backslash$:/Users/melissa.monk/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Hannah, Blume - 2012 - Tests of an experimental unbaited video lander as a marine fish survey tool for high-relief deepwater rocky reefs.pdf:pdf},
journal = {Journal of Experimental Marine Biology and Ecology},
pages = {1--9},
title = {{Tests of an experimental unbaited video lander as a marine fish survey tool for high-relief deepwater rocky reefs}},
volume = {430-431},
year = {2012}
}
@article{Harry1961,
author = {Harry, G and Morgan, A.R.},
journal = {Oregon Fish Commission Research Briefs},
pages = {5--26},
title = {{History of the trawl fishery, 1884-1961}},
volume = {19},
year = {1961}
}
@article{Hickey1979,
abstract = {The primary purpose of this paper is to describe the seasonal variation of the various currents which comprise the California Current System—the California Current, the California Undercurrent, the Davidson Current and the Southern California Countercurrent—and to investigate qualitatively the dynamical relationships among these currents. Although the majority of information was derived from existing literature, previously unpublished data are introduced to provide direct evidence for the existence of a jet-like Undercurrent over the continental slope off Washington, to illustrate ‘event’-scale fluctuations in the Undercurrent and to investigate the existence of the Undercurrent during the winter season. The existing literature is thoroughly reviewed and synthesized. In addition, and more important, geostrophic velocities are computed along several sections from the Columbia River to Cape San Lazaro from dynamic heights given by Wyllie (1966), Budinger, Coachman and Barnes (1964), and Reed and Halpern (1976). From these data and from long-term monthly wind stress data and vertical component of wind stress curl data (denoted curl $\tau$) given by Nelson (1977), interesting new conclusions are made. 1. The flow that has been denoted the California Current generally has both an offshore and a nearshore maximum in its alongshore coponent. 2. The seasonal variation of the nearshore region of strong flow appears to be related to the seasonal variation of the alongshore component of wind stress at the coast, $\tau$yN, at all latitudes. Curl $\tau$ near the coast may also contribute to the seasonal signal, accounting for the lead of maximum current over maximum wind stress from about 40°N northward. Large-scale flow separation and fall countercurrents that of headlands may account for the sudden occurrence of late summer and fall countercurrents that appear as large anomalies from the wind-driven coastal flow south of 40°N. 3. From Cape Mendocino southward a northward mean is imposed on the nearshore current distribution. The mean is largest where curl $\tau$ is locally strongest, in particular, off and south of San Francisco and in the California Bight. It may be responsible for the portion of the Davidson Current that occurs off California, for the San Francisco Eddy and for the Southern California Eddy or Countercurrent. When southward wind stress weakens in these regions, the northward mean dominates the flow. Flow separation in the vicinity of headlands may also be responsible for these northward flows. There is some evidence that during periods of northward flow a mean monthly $\tau$yN-driven southward current occurs inshore of the mean northward flow. At all latitudes, wind-driven ‘event’-scale fluctuations are expected to be superimposed on the seasonal nearshore flow. 4. The spatial distribution and seasonal variation oftthe offshore region of southward flow appear to be related to the spatial distribution and seasonal variation of curl $\tau$. The seasonal variation of curl $\tau$ in these areas, curl $\tau$l, is roughly in phase with the seasonal variation of $\tau$y near the coast and roughly 180° out of phase with the seasonal variation of curl $\tau$ near the coast. Southward flow lags negative curl $\tau$ by from two to four months. The offshore region of southward flow is strongest during the summer and early fall. The mean annual location of the maximum flow is at about 250–350 km from shore off Washington and Oregon, and at 430 km off Cape Mendocino, 270 km off Point Conception and 240 km off northern Baja. The offshore branch of the flow bends shoreward near 30°N, which is consistent with the shoreward extension of the region of negative curl $\tau$, so that by Cape San Lazaro (25°N), a single region of strong flow is observed within 200 km of the coast. 5. A third region of strong southward flow occurs at distances exceeding 500 km from the coast. The spatial distribution of this flow appears to be related to the spatial distribution of curl $\tau$. 6. The mean northward flow known as the Davidson Current consists of two regions in which the forcing may be dynamically different—seaward of the continental slope off Washington and Oregon and between Cape Mendocino and Point Conception, the mean monthly northward currents appear to be related to the occurrence of positive curl $\tau$; along the coast of Oregon and Washington the northward currents are not related to the occurrence of positive curl $\tau$ but are consistent with forcing by the mean monthly northward wind stress at the coast. 7. A region of southward flow that is continuous with the California Current to the south is generally maintained off Oregon and parts of Washington during the winter. This southward flow appears to separate the northward-flowing Davidson and Alaskan Currents in some time-dependent region south of Vancouver Island. The banded current structure is consistent with the distribution of curl $\tau$, if southward flow is related to negative curl $\tau$. 8. The seasonal progression of the California Undercurrent may be related both to the seasonal variation of the offshore region of strong flow (hence to curl $\tau$l) and to the alongshore component of wind stress at the coast. South of Cape Mendocino a northward mean also seems to be superimposed on the flow. This mean may be related to the occurrence of strong positive curl $\tau$ near the coast. Velocities at Undercurrent depths have two maxima, one in late summer and one in winter. The slope Undercurrent is indistinguishable, except by location, from the undercurrent that is observed on the Oregon-Washington continental shelf.},
author = {Hickey, Barbara M.},
file = {:C$\backslash$:/Users/melissa.monk/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Hickey - 1979 - The California current system—hypotheses and facts.pdf:pdf},
issn = {00796611},
journal = {Progress in Oceanography},
month = jan,
number = {4},
pages = {191--279},
title = {{The California current system—hypotheses and facts}},
volume = {8},
year = {1979}
}
@article{Hoenig1983,
abstract = {Various investigators have utilized compendia of life history parameters to develop equations for predicting values of difficult-to-estimate parameters from easily measured or estimated quantities. For example, Pauly(1979) developed multiple regressions to predict the natural mortality rate of fish from growth parameters and mean water temperature. Ohsumi(1979) developed linear regressions for estimating natural mortality of cetaceans from maximum length or maximum age. In this paper, a general regression equation is developed o predict the total mortality rate of fish, cetacean, and mollusk stocks from the maximum age. It seems intuitive that longgevity and mortality rate in a species should be inversely related since animals from a population with a hight mortality rate would not survive long enough to reach old age. The nature of the relationship between mortality and maximum age is explored below.},
author = {Hoenig, JM},
file = {:C$\backslash$:/Users/melissa.monk/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Hoenig - 1983 - Empirical use of longevity data to estimate mortality-rates.pdf:pdf},
journal = {Fishery Bulletin},
pages = {898--903},
title = {{Empirical use of longevity data to estimate mortality-rates}},
volume = {82},
year = {1983}
}
@article{Karnowski2014,
author = {Karnowski, M. and Gertseva, V. and Stephens, A.},
journal = {Oregon Deptartment of Fish and Wildlife. Marine Program Data Series Report},
title = {{Historic reconstruction of Oregon’s commercial fisheries landings}},
year = {2014}
}
@article{Kimura1979,
author = {Kimura, DK and Mandapat, R.R and Oxford, S.L.},
journal = {Journal of the Fisheries Research Board of Canada},
pages = {377--383},
title = {{Method, validity, and variability in the age determination of yellowtail rockfish (\emph{Sebastes flavidus}), using otoliths}},
volume = {35},
year = {1979}
}
@article{Lea1999,
author = {Lea, RN and McAllister, RD and VenTresca, DA},
file = {:C$\backslash$:/Users/melissa.monk/Desktop/TEMP/Lea1999.pdf:pdf},
journal = {California Department of Fish and Game, Fish Bulletin},
title = {{Biological aspects of nearshore rockfishes of the genus \emph{Sebastes} from Central California, with notes on ecologically related sport fishes}},
volume = {177},
year = {1999}
}
@article{Lee2009,
author = {Lee, JSF and Berejikian, BA},
file = {:C$\backslash$:/Users/melissa.monk/Desktop/TEMP/Lee2009.pdf:pdf},
journal = {Environmental biology of fishes},
pages = {411--419},
title = {{Structural complexity in relation to the habitat preferences, territoriality, and hatchery rearing of juvenile China rockfish (\emph{Sebastes nebulosus})}},
volume = {84},
year = {2009}
}
@article{Lenarz1991,
author = {Lenarz, WH and Echeverria, TW},
file = {:C$\backslash$:/Users/melissa.monk/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Lenarz, Echeverria - 1991 - Sexual dimorphism in Sebastes(2).pdf:pdf},
journal = {Environmental Biology of Fishes},
pages = {71--80},
title = {{Sexual dimorphism in \emph{Sebastes}}},
volume = {30},
year = {1991}
}
@article{Lo1992,
abstract = {Fish spotters are pilots in small aircraft employed by commercial fishermen to locate, identify, estimate the size of, and direct boats toward pelagic fish schools. Data describing species, location, and size of schools can be inexpensively obtained from fish spotters but are difficult to interpret statistically. We developed an index of relative abundance from fish spotter data based on extended delta-lognormal models and applied the method to data for northern anchovy (Engraulis mordax). In contrast with previous approaches, our method used all available data, provided an index for northern anchovy that was proportional to abundance, and explicitly modeled factors (pilots, regions, seasons, and time of day) that affected observations by fish spotters. We also included information about mixed layer depth and sea surface temperature in models for a reduced study area and found that envi- ronmental data, where available, can be used to improve estimates of relative abundance from fish spotter data. Simulation results indicated that our approach is a cost-effective way to improve biomass estimates for pelagic species like northern anchovy},
author = {Lo, N.C. and Jacobson, Larry D. and Squire, James L.},
isbn = {0706-652X},
issn = {0706-652X},
journal = {Canadian Journal of Fisheries and Aquatic Sciences},
pages = {2515--2526},
title = {{Indices of relative abundance from fish spotter data based on delta-lognornial models}},
volume = {49},
year = {1992}
}
@article{Love1998,
author = {Love, M. S. and Caselle, J.E. and Buskirk, W. Van},
file = {:C$\backslash$:/Users/melissa.monk/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/MILTON - 1998 - A severe decline in the commercial passenger fishing vessel rockfish (Sebastes spp.) catch in the Southern California Bi.pdf:pdf},
journal = {California Cooperative Oceanic Fisheries Investigations Reports},
pages = {180--195},
title = {{A severe decline in the commercial passenger fishing vessel rockfish (\emph{Sebastes} spp.) catch in the Southern California Bight, 1980-1996}},
volume = {39},
year = {1998}
}
@book{Love2002,
address = {Berkeley, CA, USA},
author = {Love, MS and Yoklavich, M and Thorsteinson, LK},
pages = {406},
publisher = {University of California Press},
title = {{The rockfishes of the northeast Pacific}},
year = {2002}
}
@article{MacCall2009,
abstract = {MacCall, A. D. 2009. Depletion-corrected average catch: a simple formula for estimating sustainable yields in data-poor situations. - ICES Journal of Marine Science, 66: 2267-2271. The depletion-corrected average catch (DCAC) formula is an extension of the potential-yield formula, and it provides useful estimates of sustainable yield for data-poor fisheries on long-lived species. Over an extended period (e.g. a decade or more), the catch is divided into a sustainable yield component and an unsustainable "windfall" component associated with a one-time reduction in stock biomass. The size of the windfall is expressed as being equivalent to a number of years of sustainable production, in the form of a "windfall ratio". The DCAC is calculated as the sum of catches divided by the sum of the number of years in the catch series and this windfall ratio. Input information includes the sum of catches and associated number of years, the relative reduction in biomass during that period, the natural mortality rate (M, which should be <0.2 year-1), and the assumed ratio of FMSY to M. These input values are expected to be approximate, and based on the estimates of their imprecision, the uncertainty can be integrated by Monte Carlo exploration of DCAC values.},
author = {MacCall, Alec D.},
issn = {10543139},
journal = {ICES Journal of Marine Science},
keywords = {Data-poor assessment,Potential-yield formula,Stock depletion,Sustainable yield},
pages = {2267--2271},
title = {{Depletion-corrected average catch: A simple formula for estimating sustainable yields in data-poor situations}},
volume = {66},
year = {2009}
}
@article{Magnell1990,
author = {Magnell, BA and Bray, NA and Winant, CD},
file = {:C$\backslash$:/Users/melissa.monk/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Magnell, Bray, Winant - 1990 - Convergent shelf flow at Cape Mendocino.pdf:pdf},
journal = {Oceanography},
pages = {4--11},
title = {{Convergent shelf flow at Cape Mendocino}},
volume = {3},
year = {1990}
}
@article{Mason1995,
abstract = {Three surveys spanning 28 years were examined for changes in species caught by recreational fishermen from small boats (skiffs) and commercial passenger fishing vessels (CPFVs) in California's Monterey Bay region. As fishing effort increased, the catch of certain nearhore species of rockfish declined. CPFV fishing was conducted farther from port and in deeper water to compensate for declining abundance while most skiffs remained in traditional areas close to port. The trend toward deeper water CPFV fishing has been interrrupted only temporarily by increased availability of nearshore spp. Life history characteristics of rockfish including rresidential behavior, variable recruitment, and natural longevity contribute to a vulnerability to localized overfishing for several species.},
author = {Mason, Janet E},
file = {:C$\backslash$:/Users/melissa.monk/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Mason - 1995 - Species Trends in Sport Fisheries , Monterey Bay , Calif ., 1959-86(2).pdf:pdf},
issn = {00901830},
journal = {Marine Fish Review},
pages = {1--16},
title = {{Species Trends in Sport Fisheries , Monterey Bay , Calif ., 1959-86}},
volume = {57},
year = {1995}
}
@article{Matthews1990,
author = {Matthews, KR},
journal = {Environmental Biology of Fishes},
pages = {161--178},
title = {{An experimental study of the habitat preferences and movement patterns of copper, quillback, and brown rockfishes (\emph{Sebastes} spp.)}},
volume = {29},
year = {1990}
}
@article{McAllister1997,
abstract = {A Bayesian approach to fisheries stock assessment is desirable because it yields a probability density function (pdf) of population model parameters. This pdf can help to provide advice to fishery managers about the consequences of alternative harvest policies and convey uncertainty about quantities of interest such as population biomass. In stock assessment, catch-age data are commonly used to estimate population parameters. However, there are few catch-age analyses that use Bayesian methods. In this paper, we extend the sampling - importance resampling algorithm so that a pdf of population model parameters can be estimated using catch-age data and indices of relative abundance. We illustrate the procedure by estimating a 54-parameter pdf for yellowfin sole (Limanda aspera) in the eastern Bering Sea. The example demonstrates how catch-age data can markedly improve Bayesian estimation, and also illustrates the potential for significant biases in treating trawl survey abundance indices as absolute measures of stock size.},
author = {McAllister, M K and Ianelli, J N},
isbn = {0706-652X},
issn = {1205-7533},
journal = {Canadian Journal of Fisheries and Aquatic Sciences},
keywords = {fishery,inference,parameters,posterior distributions},
number = {2},
pages = {284--300},
title = {{Bayesian stock assessment using catch-age data and the sampling - importance resampling algorithm}},
volume = {54},
year = {1997}
}
@book{Mecklenburg2002,
address = {Bethesda, Maryland},
author = {Mecklenburg, CW and Mecklenburg, TA and Thorsteinson, LK},
publisher = {American Fisheries Society},
title = {{Fishes of Alaska}},
year = {2002}
}
@article{Methot2015,
author = {Methot, Richard D.},
journal = {NOAA Fisheries, US Department of Commerce},
title = {{User manual for Stock Synthesis model version 3.24s}},
year = {2015}
}
@article{Methot2013,
abstract = {Stock synthesis (SS) is a statistical age-structured population modeling framework that has been applied in a wide variety of fish assessments globally. The framework is highly scalable from data-weak situations where it operates as an age-structured production model, to complex situations where it can flexibly incorporate multiple data sources and account for biological and environmental processes. SS implements compensatory population dynamics through use of a function relating mean recruitment to spawner reproductive output. This function enhances the ability of SS to operate in data-weak situations and enables it to estimate fishery management quantities such as fishing rates that would provide for maximum sustainable yield and to employ these rates in forecasts of potential yield and future stock status. Complex model configurations such as multiple areas and multiple growth morphs are possible, tag-recapture data can be used to aid estimation of movement rates among areas, and most parameters can change over time in response to environmental and ecosystem factors. SS is coded using Auto-Differentiation Model Builder, so inherits its powerful capability to efficiently estimate hundreds of parameters using either maximum likelihood or Bayesian inference. Output processing, principally through a package developed in R, enables rapid model diagnosis. Details of the underlying population dynamics and the statistical framework used within SS are provided. ?? 2012.},
author = {Methot, Richard D. and Wetzel, Chantell R.},
isbn = {0165-7836},
issn = {01657836},
journal = {Fisheries Research},
keywords = {Fishery management,Population models,Stock assessment,Stock synthesis},
pages = {86--99},
title = {{Stock synthesis: A biological and statistical framework for fish stock assessment and fishery management}},
volume = {142},
year = {2013}
}
@article{Miller1965,
author = {Miller, D.J. and Gotshall, D.},
journal = {State of California, The Resources Agency Department of Fish and Game, Fish Bulletin},
title = {{Ocean sportfish catch and effort from Oregon to Point Arguello, California July 1, 1957-June 30, 1961}},
volume = {130},
year = {1965}
}
@article{Monk2013,
author = {Monk, M. and Dick, E. and Buell, T. and ZumBrunnen, L. and Dauble, A. and Pearson, D.},
journal = {NOAA-TM-NMFS-SWFSC-519},
title = {{Documentation of a relational database for the Oregon Sport Groundfish Onboard Sampling Program}},
year = {2013}
}
@article{Monk2014,
author = {Monk, M.H. and Dick, E.J. and Pearson, D.},
journal = {NOAA-TM-NMFS-SWFSC-529},
title = {{Documentation of a relational database for teh California recreational fisheries survey onboard observer sampling program, 1999-2011}},
year = {2014}
}
@article{Munk2001,
author = {Munk, KM},
file = {:C$\backslash$:/Users/melissa.monk/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Munk - 2001 - Maximum ages of groundfishes in waters off Alaska and British Columbia and considerations of age determination.pdf:pdf},
journal = {Alaska Fishery Research Bulletin},
pages = {12--21},
title = {{Maximum ages of groundfishes in waters off Alaska and British Columbia and considerations of age determination}},
volume = {8},
year = {2001}
}
@misc{NMFS2005,
address = {Seattle, WA},
author = {NMFS},
title = {{Pacific Coast Fishery Management Plan: Essential Fish Habitat Designation and Minimization of Adverse Impacts: Final Environmental Impact Statement}},
year = {2005}
}
@techreport{PFMC2013,
author = {{Pacific Fishery Managment Council}},
file = {:C$\backslash$:/Users/melissa.monk/Downloads/FEP\_FINAL.pdf:pdf;:C$\backslash$:/Users/melissa.monk/Downloads/FEP\_Initiatives\_Appendix\_FINAL\_July2013.pdf:pdf},
institution = {Pacific Fishery Management Council, 7700 NE Ambassador Place, Suite 101, Portland, Oregon 97220-1384},
title = {{Pacific Coast Fishery Ecosystem Plan for the U.S. Portion of the California Current Large Marine Ecosystem}},
year = {2013}
}
@techreport{Palsson2009,
author = {Palsson, W.A. and Tsou, T-S and Bargmann, G.G. and Buckley, R.M. and West, J.E. and Mills, M.L and Cheng, Y.W. and Pacunski, R.E.},
file = {:C$\backslash$:/Users/melissa.monk/Desktop/TEMP/wdfw00926.pdf:pdf},
institution = {Fisher Management Division, Fish Program, Washington Department of Fish and Wildlife},
title = {{The biology and assessment of rockfishes in Puget Sound}},
year = {2009}
}
@article{Parker2006,
abstract = {Fishes with closed swim bladders regulate buoyancy during depth changes by secreting and resorbing swim bladder gases. Forced ascent during fishery capture results in barolrauma caused by rapid expansiun und exsolulion of gases from body fluids. Pressure changes in hyperbaric chambers were used to examine changes in swim bladder integrity and acclimation rnles in two ecologically different, yet congeneric, species: hlack rockfish SeIJasle" fllelanol's and China rockfish S. IIchuloSl/s. We also conducted simulated- cnplure experiments to invesl'igate the relationship between capture in a fishery, bUl"Jlrauma from pressure change, and survival afler release, Black rockJ'ish acclimated fasler than China rockfish to both increases and decreases in pressure, but bolh species were much slower 10 acclimate than other pliysoclists, such as Atlantic cod Gadus 11101'1/110. Black rockfish re<.juired up tu 48 h to acdimate from 4 utmospheres absolute (ATA; depth equivalcnt of 30 m) 10 surfacc pressure and required up 10168 h 10 bccome ncutrally huoyant at4 ATA after starting from surface pressure, In contrast. China rockfish required over 250 h 10 become neutrally buoyanl at 4 ATA after starting from surface pressurc. All black rockfish exposed to a 3-ATA decrease in pressure during simulated capture had rupture<] swim bladders. Howevcr, mortality from simulated capture and subsequent recompression lVas low; only 3.3 :!: 1.7\% (mean :!:SE) mOrlality was observcd after 21 d. In experimellls with black rockfish. rapid recompression reversed visible barotrauma, suggesting Ihat a quick return to depth could be used to minimize mortality of discarded black rockfish in nearshore fisheries.},
author = {Parker, Steven J. and McElderry, Howard I. and Rankin, Polly S. and Hannah, Robert W.},
file = {:C$\backslash$:/Users/melissa.monk/Desktop/TEMP/parker2006.pdf:pdf},
isbn = {0002-8487},
issn = {0002-8487},
journal = {Transactions of the American Fisheries Society},
pages = {1213--1223},
title = {{Buoyancy regulation and barotrauma in two species of nearshore rockfish}},
volume = {135},
year = {2006}
}
@techreport{Pearson2000,
address = {Tiburon, California},
author = {Pearson, DE},
file = {:C$\backslash$:/Users/melissa.monk/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Pearson - 2000 - Data Availability, Landings, and Length Trends of California's Rockfish.pdf:pdf},
institution = {National Marine Fisheries Service},
title = {{Data availability, landings, and length trends of California's rockfish. Administrative Report SC-00-01}},
year = {2000}
}
@techreport{Pearson1997,
author = {Pearson, Donald E. and Erwin, Brenda},
booktitle = {NOAA Technical Memorandum NMFS},
institution = {Department of Commerce},
keywords = {China2015},
mendeley-tags = {China2015},
number = {NOAA-TM-NMFS-SWFSC-24},
pages = {62},
title = {{Documentation of California's commercial market sampling data entry and expansion programs}},
year = {1997}
}
@article{Pikitch1988,
author = {Pikitch, E.K. and Erickson, D.L. and Wallace, J.R.},
journal = {Northwest and Alaska Fisheries Center, National Marine Fisheries Service, US Department of Commerce},
title = {{An evaluation of the effectiveness of trip limits as a management tool}},
year = {1988}
}
@misc{rBase,
abstract = {R Core Team (2013). R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. ISBN 3-900051-07-0, URL http://www.R-project.org/.},
author = {{R Development Core Team}},
booktitle = {R Foundation for Statistical Computing, Vienna, Austria.},
issn = {16000706},
title = {{R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. URL http://www.R-project.org/.}},
year = {2013}
}
@article{Ralston2010,
author = {Ralston, S.E. and Pearson, D.E. and Field, J.C. and Key, M.},
journal = {NOAA-TM-NMFS-SWFSC-461},
title = {{Documentation of California catch reconstruction project}},
year = {2010}
}
@article{Reilly1998,
author = {Reilly, P. N. and Wilson-Vandenberg, D. and Wilson, C. E. and Mayer, K.},
journal = {Marine region, Admin. Rep.},
pages = {1--110},
title = {{Onboard sampling of the rockfish and lingcod commercial passenger fishing vessel industry in northern and central California, January through December 1995.}},
volume = {98-1},
year = {1998}
}
@article{Rodomsky2014,
author = {Rodomsky, B.T. and Krutzikowsky, G.K. and Ireland, R.C. and Calavan, R.},
journal = {Oregon Dept of Fish \& Wildlife. Marine Program Data Series Report.},
title = {{The 2013 Oregon commercial nearshore fishery summary}},
year = {2014}
}
@article{Rogers1992,
author = {Rogers, J.B. and Pikitch, E.K.},
journal = {Canadian Journal of Fisheries and and Aquatic Sciences},
pages = {2648--2656},
title = {{Numerical definition of groundfish assemblages caught off the coasts of Oregon and Washington using commercial fishing strategies}},
volume = {49},
year = {1992}
}
@article{Sivasundar2010,
author = {Sivasundar, A and Palumbi, SR},
file = {:C$\backslash$:/Users/melissa.monk/AppData/Local/Mendeley Ltd./Mendeley Desktop/Downloaded/Sivasundar, Palumbi - 2010 - Life history, ecology and the biogeography of strong genetic breaks among 15 species of Pacific rockfish(2).pdf:pdf},
journal = {Marine Biology},
pages = {1433--1452},
title = {{Life history, ecology and the biogeography of strong genetic breaks among 15 species of Pacific rockfish, \emph{Sebastes}}},
volume = {157},
year = {2010}
}
@article{Sotka2004,
author = {Sotka, EE and Wares, JP and Barth, JA},
journal = {Molecular Ecology},
pages = {2143--2156},
title = {{Strong genetic clines and geographical variation in gene flow in the rocky intertidal barnacle Balanus glandula}},
volume = {13},
year = {2004}
}
@article{Starr2015,
author = {Starr, R.M. and Wendt, D.E. and Barnes, C.L. and Marks, C.I. and Malone, D. and Waltz, G. and Schmidt, K.T. and Chiu, J. and Launer, A.L. and Hall, N.C. and Yochum, N.},
journal = {PLoS one},
pages = {e0118502},
title = {{Variation in responses of fishes across multiple reserves within a network of marine protectes areas in temperate waters}},
volume = {10},
year = {2015}
}
@article{Stefansson1996,
author = {Stef\'{a}nsson, G},
journal = {ICES Journal of Marine Science},
pages = {577--588},
title = {{Analysis of groundfish survey abundance data: combining the GLM and delta approaches}},
volume = {53},
year = {1996}
}
@article{Stephens2004,
abstract = {An initial step in catch and effort analysis is determination of what subset of the data is relevant to the analysis. We propose an objective approach to subsetting trip records of catch and effort data when fishing locations are unknown; the species composition taken on a fishing trip is used to infer if that trip's fishing effort occurred in a habitat where the species of interest (the target species) is likely to occur. We use a logistic regression of multispecies presence-absence information to predict the probability that the target species would be present. A critical value of probability that best predicts target species presence and absence in the data set forms an objective basis for subsetting the trip records. We test this approach by applying it to a data set where individual fishing locations are known, and we show that the method is an effective substitute for information on individual fishing locations. ?? 2004 Elsevier B.V. All rights reserved.},
author = {Stephens, Andi and MacCall, Alec},
isbn = {0165-7836},
issn = {01657836},
journal = {Fisheries Research},
keywords = {CPUE,Catch-per-unit-effort,Habitat,Logistic regression,Multispecies},
pages = {299--310},
title = {{A multispecies approach to subsetting logbook data for purposes of estimating CPUE}},
volume = {70},
year = {2004}
}
@article{Stephens2006,
abstract = {Rockfishes (Sebastes spp.) have historically comprised a large proportion of catches in the nearshore recre- ational fishery in California, but declining populations of some species have led to increasingly restrictive man- agement of the resource. This report summarizes new and existing data on rockfishes of the south central coast of California. In 2003, the California State Polytechnic University, San Luis Obispo placed observers on com- mercial passenger fishing vessels (partyboats) from the region. By the end of 2005, we had observed catches from 258 trips (8,839 fisher hours). We appended these data to partyboat catch statistics collected by the California Department of Fish and Game from 1988 to 1998 and calculated annual catch per unit effort (CPUE) and mean sizes by species and year. The CPUE data by species fluctuate annually but rarely show consistent trends. The overall CPUE for 2004 and 2005 ranks in the top five of the twenty sampled years. Mean sizes have been con- sistent by species, generally just above the size of 50\% maturity. Comparing these sizes to historical data shows decreases in some species but not in others. A review of NOAA/NMFS triennial trawl data for the Point Conception area in the southern part of the study re- gion suggests that the deeper shelf and slope species, with a few exceptions, show little evidence of long-term declines. In general, the south central coast rockfish re- sources, with the exception of bocaccio (S. paucispinis), have not shown strong evidence of a declining trend over},
author = {Stephens, John and Wilson-vandenberg, Debra and Wendt, Dean and Carroll, Jay and Nakamura, Royden and Nakada, Erin and Reinecke, Steven John and Wilson, Jono},
file = {:C$\backslash$:/Users/melissa.monk/Desktop/TEMP/Stephens2006.pdf:pdf},
journal = {The California Cooperative Oceanic Fisheries Investigations Reports},
pages = {140--155},
title = {{Rockfish resouces of the south central California coast: analysis of the resource from partyboat data, 1980 – 2005}},
volume = {47},
year = {2006}
}
@article{Tolimieri2006,
author = {Tolimieri, N and Levin, PS},
journal = {Transactions of the American Fisheries Society},
pages = {317--332},
title = {{Assemblage structure of eastern Pacific groundfishes on the US continental slope in relation to physical and environmental variables}},
volume = {135},
year = {2006}
}
@article{VanVoorhees2000,
author = {{Van Voorhees}, D. and Hoffman, A. and Lowther, A. and {Van Buskirk}, W. and Weinstein, J. and White, J.},
file = {:C$\backslash$:/Users/melissa.monk/Desktop/TEMP/RecFIN\_ORBS\_MRFSS\_Comparison.PDF:PDF},
journal = {The Pacific RecFIN Statistics Subcommittee, http://old.recfin.org/lib/RecFIN\_ORBS\_ MRFSS\_Comparison.PDF},
title = {{An evaluation of alternative estimators of ocean boat fish effort and catch in Oregon}},
year = {2000}
}
@article{vonB1938,
author = {von Bertalanffy, L},
journal = {Human Biology},
pages = {181--213},
title = {{A quantitative theory of organic growth}},
volume = {10},
year = {1938}
}
@phdthesis{Weis2004,
author = {Weis, L.J.},
pages = {55},
school = {Univeristy of Washington},
title = {{The effects of San Juan County, Washington, marine protected areas on larval rockfish production}},
type = {M.S. Thesis},
year = {2004}
}
@article{Williams2002,
author = {Williams, E H and Ralston, S},
journal = {Fishery Bulletin},
pages = {836--855},
title = {{Distribution and co-occurrence of rockfishes (family: Sebastidae) over trawlable shelf and slope habitats of California and southern Oregon}},
volume = {100},
year = {2002}
}
@article{Young2010,
abstract = {Accurate efficient estimation of actual and potential species distribution is a critical requirement for effective ecosystem-based management and marine protected area design. In this study we tested the applicability of a terrestrial landscape modeling technique in a marine environ- ment for predicting the distribution of ecologically and economically important groundfish, using 3 species of rockfish at Cordell Bank National Marine Sanctuary (CBNMS) as a model system. Auto- classification of multibeam bathymetry along with georeferenced submersible video transect data of the seafloor and demersal fishes were used to model the abundance and distribution of rockfish. Gen- eralized linear models (GLMs) were created using habitat classification analyses of high-resolution (3 m) digital elevation models combined with fish presence/absence observations. Model accuracy was assessed using a reserved subset of the observation data. The resulting probability of occurrence models generated at 3 m resolution for the entire 120 km2 study area proved reliable in predicting the distribution of all the species. The accuracies of the models for Sebastes rosaceus, S. flavidus and S. elongatus were 96, 92 and 92\%, respectively. The probability of occurrence of S. flavidus and S. rosaceus was highest in the high relief rocky areas and lowest in the low relief, soft sediment areas. The model for S. elongatus had an opposite pattern, with the highest predicted probability of occur- rence taking place in the low relief, soft sediment areas and a lower probability of occurrence in the rocky areas. These results indicate that site-specific and species-specific algorithmic habitat classifi- cation applied to high-resolution bathymetry data can be used to accurately extrapolate the results from in situ video surveys of demersal fishes across broad areas of habitat.},
author = {Young, Mary A. and Iampietro, Pat J. and Kvitek, Rikk G. and Garza, Corey D.},
file = {:C$\backslash$:/Users/melissa.monk/Desktop/TEMP/Young2010.pdf:pdf},
isbn = {0171-8630},
issn = {01718630},
journal = {Marine Ecology Progress Series},
keywords = {Ecosystem-based management,Fishery management,GLMs,Groundfish,Marine protected area,Rockfish},
pages = {247--261},
title = {{Multivariate bathymetry-derived generalized linear model accurately predicts rockfish distribution on Cordell Bank, California, USA}},
volume = {415},
year = {2010}
}