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Readme.txt
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Readme.txt
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#############################################################################################
# Files to accompany paper:
# Thaxter, C.B. et al. Avian Vulnerability to Wind Farm Collision Through the Year:
# Insights from Lesser Black-backed Gulls (Larus fuscus) Tracked from Multiple Breeding Colonies.
# Journal of Applied Ecology
#############################################################################################
########################### SCRIPTS ###########################
######## ORFORD.R ########
# Full modelling script. note file sizes were very large and so have not been uploaded here, but models were specified
# as in this example - note called "ORFORD" but actually set to model the Walney colony, via toggle of colony name
######## Spatial plots.SEV.R ########
# Full mapping script to produce main graphical outputs within the paper. NOTE: Original files used are too big to be shared here. Please # contact me if these are required.
########################### DATASETS ###########################
######## country.zip ########
# Shapefiles for plotting base maps
######## predgrid_Walney.csv ... ########
# Prediction grids for each colony; note suffix of 'firstyear' for Orford Ness presenting the first year of tracking data in this paper
######## Walney.WR.csv ... ########
# Full raw data files on distance travelled within the CRW per square, bird and Julian date, feeding into modelling for sensitivity
# These files are large and have been uploaded as .gz zip files, available under the release tab
######## p.coll.surface.csv ########
# Probability of collision, for combining with the spatial model of distance travelled within the collision risk window to
# produce final sensitivity surfaces.
######## n.turb.csv ########
# csv file of number of turbines per grid square used as the exposure surface
######## Walney.sp.agg.csv ########
# Saved aggregation of modelled GAMM sensitivity surface, aggregated across julian dates
# For further plotting as quantiles across blank swathe of area use
######## Walney.200.5_WR.csv ... ########
# Full model output files for each colony, numbers denoting degrees of freedom in space and time (model A = 200.5, model B = 25.100)
# These files are large and have been uploaded as .gz zip files, available under the release tab