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Running the dataset (ogbn-arxiv/ogbn-products/pubmed) does not work #6

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goodluck-hojae opened this issue Sep 12, 2024 · 2 comments

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@goodluck-hojae
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Hi I tried to run other dataset such as pubmed & ogbn-product dataset .
I successfully ran the prepare data script and got
orkut, ogbn-products, ogbn-100m and pubmed preprocessed dataset
image

ogbn-arxiv - ValueError: Tensors must be contiguous (Reported at #5 as well)
ogbn-products - ValueError: Tensors must be contiguous
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pubmed- We processed the pubmed dataset with torch_geometric.datasets.Plantoid & dgl.data.PubmedGraphDataset modules as follows
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However when I run the experiment, it shows 0 loss along with the message "no training nodes in this partition!"
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Apart from default (reddit) dataset I was not able to run the experiments.
Could you please suggest what to do for running those dataset?

Thank you

@onepiecewiley
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hello,do you solve this problem

@xiaosutongzhi
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In cached_gcn.py, at line 56, change feature_bcast to feature_bcast.contiguous(). This ensures the tensor is contiguous.

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