filters.yml

sscount_far:
  type: filter_sscount
  confidence: False
  min_helix_length: 4 #Min resis in helix to count as ss element. default 4
  min_sheet_length: 3 #Min resis in sheet to count as ss element. default 3
  min_loop_length: 1 #Min resis in loop to count as ss element. default 1
  max_dist: 9 #Maximum distance between residues to include in SS count
  min_element_resis: 3 #Min interface resis in ss_element to include in ss count. default 3
  sstype: "EHL" #Types of secondary structure to include in count. defaults to all (EHL)
  min_ss_count: 3 #If sscount_confidence set, minimum number of ss elements to pass the filter. default 3
  strict: False #Require that both pairs of residues in the interface are in an SS element meeting the set criteria')
sscount_near:
  type: filter_sscount
  confidence: True
  min_helix_length: 4 #Min resis in helix to count as ss element. default 4
  min_sheet_length: 3 #Min resis in sheet to count as ss element. default 3
  min_loop_length: 1 #Min resis in loop to count as ss element. default 1
  max_dist: 8 #Maximum distance between residues to include in SS count
  min_element_resis: 3 #Min interface resis in ss_element to include in ss count. default 3
  sstype: "EHL" #Types of secondary structure to include in count. defaults to all (EHL)
  min_ss_count: 3 #If sscount_confidence set, minimum number of ss elements to pass the filter. default 3
  strict: False #Require that both pairs of residues in the interface are in an SS element meeting the set criteria')
sasa_estimate:
  type: filter_sasa
  confidence: True
  min_sasa: 750 #Min interface size. Default = 750
  max_sasa: 1500 #Max interface size. Default = 1500
  max_dist: 9 #Maximum distance between residues to include in interface
  apply: True #Return sasa?
  ncont: False #Return unique ncontact (instead of normal ncontact). Note if apply and ncont are both false this filter essentially returns ncontact