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V1.6.1

Features

  • Fixed navigation error when clicking 'previous' in EAL.

  • Added a counter for the number of users, outputting in the logs.

Work in progress

  • Tests: write a complete set of tests.

  • Annotations: continue dev-metafin branch.

v1.6.0

Features

  • Fixed DataOne nodes list

  • Increased file input limit to 2 Go

  • Added this NEWS file.

  • Upgrade to R4.1.0: removed {emldown} dependency for compatibility motives.

  • Setup {shinytest} tests functionnal.

  • Fixed unit load on Attributes.

  • Fixed better UI for method selection in geographic coverage step.

  • Fixed marked ORCID input as facultative in personnel step.

  • Fixed revised unit list.

  • Fixed revised custom unit list.

Work In progress

  • Tests: set a complete set of tests.

  • Upload: make data packages be fully uploaded.

  • Annotations: continue dev-metafin branch.

v1.5.3

  • NOTE: two tags were released because of a non-updated archive in 1.5.2.

  • stable version (v1.5.1-stable).

  • MetaFIN: add xml handling utils.

  • Fixed Categorical variables fails to save.

  • Fixed Taxonomic Coverage templating on "previous".

  • Fixed Corrected one-file handling.

v1.5.1 : Spring update

  • Set file upload max size to 50 Mb.

  • Added {profvis} support.

  • Fixed checks for categorical variables templating

  • Fixed Taxonocmic Coverage initialization

  • Fixed attributes tree, now starts opened

  • Fixed attributes & categorical variables trees renders

v1.5 : Winter Production

  • Added interest ontologies list as resource

  • Added a way to use MetaShARK in locale with Docker.

  • Initialized MetaFIN.

  • Fixed attributes. Other impacted steps have been edited

  • Fixed missing value detection.

v1.4 : Summer production

  • Started tests support with {shinytest} - not achieved

  • Improved excel files support: no support further than the first sheet.

  • R/ files were renamed.

  • Save method improved

  • ORCID support (miscellaneous module)

  • First step with annotations (see {cedarr})

  • WIP mode (display WIP features or not)

  • variables refactored around main.env reactive values

  • support for shiny 1.5

  • Added log messages

  • Added colorized feedbacks

  • Added attributes content preview

  • Fixed xcel support: multi-sheet support

  • Fixed latitude/longitude input + next/previous unexpected behavior (moved more than one step)

  • Fixed app freeze on launch

  • Fixed zip download in DP selection

  • Fixed upload module and registered endpoints

v1.3 : Good gui MetaShARK

  • Added emldown generation

  • Added quick mode to populate inputs upon coming on a module

  • Added LICENSE

  • Added helpers to each Fill-In module

  • Set save method to JSON format

  • Fixed upload module

v1.2 : EML Assembly Line Update - beta-test version

  • Changed files organizations for best practices compliance

  • Dockerization of the app (https://hub.docker.com/repository/docker/eliearnaud/metashark)

  • Revised workflow

  • Download data packages from Select Data Packages page.

  • Added dev server address (used with OpenGenOuest, no more in use)

  • Added markdown support for Miscellaneous step

  • Prettified modules organization

  • Published in Zenodo

  • Fixed ShinyFiles/Shiny correction according to local/server usage

  • Fixed image display without using 'renderImage()' method

  • Fixed make make_eml().

1.1 : EML Assembly Line Update - alpha version

  • added CSS styles

  • code documentation has been set with {roxygen} syntax

  • upload module is ready (some part is still in dev)

  • EML-ready data packages can be uploaded, with conditions (soon fixed):only text/csv, files, no scripts, only on PNDB metacat

  • Attributes module finished (with custom units)

  • Categorical Variables are being worked

  • Added Geographic Coverage facultative module with2 methods: columns selection (choose latitude and longitude columns among your dataset) and custom edition (describe each site one by one if you don't have yet a file).

  • module CustomUnits is functional

  • Update GO FAIR bibtex ref as a package internal data

  • Fixed troubles accessing package data

Initial git setup

  • Reused git parts from archived earnaud/MetaShARK

  • Organized code and internal data to be used as an R package

  • Set dev buttons. Run: runMetashark(dev = TRUE) to get access to dev buttons (allowing to browse in middle of the code). dev=FALSE is to use for presentation purposes but is set as default.

  • Modified way to install MetaShARK