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ChangeLog
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ChangeLog
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2016-04-23 Charles Plessy <[email protected]>
* Increment minor version number to trigger update.
2016-04-17 Charles Plessy <[email protected]>
* Added citation information.
* Point URL to the Branchable homepage.
2015-02-05 Charles Plessy <[email protected]>
* Aded the function private_clonotypes().
2014-09-25 Charles Plessy <[email protected]>
* Version 1.3.2
* Import “methods” instead of depending on.
* Corrected typos.
2014-04-08 Charles Plessy <[email protected]>
* Version 1.1.6
* Transfer “NEWS” to ChangeLog and add release notes to “NEWS”.
2014-04-03 Charles Plessy <[email protected]>
* Version 1.1.5
* Mention the GitHub bridge in the documentation
2014-03-05 Bioc admins
* Version 1.1.4.
* Change biocviews to “Sequencing”.
2013-12-11 Charles Plessy <plessy@riken>
* Committed 1.1.3 to Bioconductor.
* Fixed two bugs in yassai_identifier().
- Infinite loop when the CDR3 is fully contained in the J segment.
- Bogus 'integer(0)' output when there are only germline residues.
* Avoid more collisions by indicating the position of the V-J junction
when there is no codon ID to indicate.
* Mark and filter out clonotypes with ambiguous ('N') nucleotides.
2013-12-05 Charles Plessy <plessy@riken>
* New "long" option to yassai_identifier(), to avoid collisions.
2013-11-19 Charles Plessy <[email protected]>
* New references from NCBI, updating TRDV5.
2013-10-23 Charles Plessy <[email protected]>
* Commited 1.1.2 to Bioconductor.
* clonotype_table: new option to randomly "sample" libraries.
2013-10-17 Charles Plessy <[email protected]>
* Commited 1.1.1 to Bioconductor.
* common_clonotypes: new mode to calculate the "abundance" relatively
to one library.
2013-10-07 Charles Plessy <[email protected]>
* Commited 0.99.6 to Bioconductor.
* Added unit tests for yassai_identifier().
2013-08-01 Charles Plessy <[email protected]>
* Unified the syntax of common_clonotypes and unique_clonotypes.
2013-05-07 Charles Plessy <[email protected]>
* Resubmitted 0.99.5 to Bioconductor.
* Distribute a copy of the clonotypes extracted from example_data.
* Execute all examples in the vignette.
2013-05-01 Charles Plessy <[email protected]>
* Resubmitted 0.99.4 to Bioconductor
* Moved the Markdown vignette to '/vignettes'.
* Added executable example with test data to the vignette.
2013-04-26 Charles Plessy <[email protected]>
* Resubmitted 0.99.3 to Bioconductor
* Moved extra data to 'inst/extdata'.
* Moved the Markdown vignette to 'inst/vignettes'.
2013-04-15 Charles Plessy <[email protected]>
* Resubmission after correcting yassai_identifier() and other warnings.
2013-01-08 Charles Plessy <[email protected]>
* Leaner Bioconductor package, without the wiki documentation.
2012-..... Charles Plessy <[email protected]>
* Many entries missing.
2012-10-10 Charles Plessy <[email protected]>
* Corrected Frenglish “improductive” with “unproductive”.
This can break backwards compatibility.
2012-09-06 Charles Plessy <[email protected]>
* Initial release