From e901f0d2a71797212b48eefa072f5b900827c24b Mon Sep 17 00:00:00 2001 From: Vitaliy Mysak Date: Mon, 8 Jul 2024 14:05:44 -0700 Subject: [PATCH] Switch to CFEIntact --- Pipfile | 2 +- Singularity | 2 +- setup.py | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/Pipfile b/Pipfile index bd1ed10..013d026 100644 --- a/Pipfile +++ b/Pipfile @@ -10,7 +10,7 @@ python-levenshtein = "==0.12.0" pandas = "==2.0.2" requests = "==2.31.0" pyyaml = "*" -intactness-pipeline = {ref = "cfe-1.4", git = "https://github.com/cfe-lab/HIVIntact"} +intactness-pipeline = {ref = "v1.18.4", git = "https://github.com/cfe-lab/CFEIntact"} [dev-packages] pytest = "*" diff --git a/Singularity b/Singularity index 018d4df..513dd05 100644 --- a/Singularity +++ b/Singularity @@ -38,7 +38,7 @@ From: ubuntu:22.04 apt-get install -y ncbi-blast+ echo ===== Installing Python packages ===== >/dev/null - pip3 install git+https://github.com/cfe-lab/HIVIntact@cfe-1.4 + pip3 install git+https://github.com/cfe-lab/CFEIntact@v1.18.4 cd /opt/primer_finder pip3 install . diff --git a/setup.py b/setup.py index 299c967..581205c 100644 --- a/setup.py +++ b/setup.py @@ -10,7 +10,7 @@ 'python-Levenshtein==0.12.0', 'pandas==2.0.2', 'requests==2.31.0', - 'intactness-pipeline @ git+https://github.com/cfe-lab/HIVIntact.git@cfe-1.4', + 'intactness-pipeline @ git+https://github.com/cfe-lab/CFEIntact.git@v1.18.4', 'pyyaml' ], package_data={