From 9454adea9ed4f80a3f793374af39463c50511689 Mon Sep 17 00:00:00 2001 From: Vitaliy Mysak Date: Mon, 29 Jul 2024 10:31:34 -0700 Subject: [PATCH] Fix landscape generation based on sample_name --- gene_splicer/landscapes.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/gene_splicer/landscapes.py b/gene_splicer/landscapes.py index 2fa6c3e..60fe908 100644 --- a/gene_splicer/landscapes.py +++ b/gene_splicer/landscapes.py @@ -56,7 +56,7 @@ def generate_proviral_landscape_csv_1_cont(blastn_reader: csv.DictReader, ref_end = new_end is_inverted = 'yes' - verdict = verdicts.get(sample_name) + verdict = verdicts.get(qseqid) landscape_entry = {'ref_start': ref_start, 'ref_end': ref_end, 'samp_name': sample_name,