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Add Signal-to-Noise to MiSeqQC_InteropSummary #12

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cbrumme opened this issue Sep 9, 2014 · 0 comments
Open

Add Signal-to-Noise to MiSeqQC_InteropSummary #12

cbrumme opened this issue Sep 9, 2014 · 0 comments

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@cbrumme
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cbrumme commented Sep 9, 2014

Illumina doesn't include Signal-to-Noise in their summary, but it sounds like a good thing for us to track.

  1. Add Signal-To-Noise field to MiSeqQC_InteropSummary
  2. Populate it thusly:

Read1

$query = "Select AVG(SIGNAL_TO_NOISE) from SPECIMEN.MiSeqQC_CORRECTEDINTENSITIES where RUNID = ".$RunID." AND SIGNAL_TO_NOISE > -1 AND". $read1

Read2

$query = "Select AVG(SIGNAL_TO_NOISE) from SPECIMEN.MiSeqQC_CORRECTEDINTENSITIES where RUNID = ".$RunID." AND SIGNAL_TO_NOISE > -1 AND". $read2

@donkirkby donkirkby added this to the near future milestone Apr 14, 2015
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