From bc7e6fe523e10980ecde45cb9c721484d7bdb2ae Mon Sep 17 00:00:00 2001
From: Vitaliy Mysak <vmysak@bccfe.ca>
Date: Fri, 25 Oct 2024 17:24:11 -0700
Subject: [PATCH] Update python to version 3.12

This is the version used on current Ubuntu and Debian.
---
 .github/workflows/build-and-test.yml | 4 ++--
 CONTRIBUTING.md                      | 2 +-
 Dockerfile                           | 2 +-
 Singularity                          | 2 +-
 pyproject.toml                       | 4 ++--
 5 files changed, 7 insertions(+), 7 deletions(-)

diff --git a/.github/workflows/build-and-test.yml b/.github/workflows/build-and-test.yml
index 189e1723d..457b1c3f4 100644
--- a/.github/workflows/build-and-test.yml
+++ b/.github/workflows/build-and-test.yml
@@ -8,7 +8,7 @@ jobs:
       - name: Set up Python
         uses: actions/setup-python@v2
         with:
-          python-version: 3.11
+          python-version: 3.12
       - run: mkdir -p ~/bin
       - run: echo ~/bin >> $GITHUB_PATH
 
@@ -95,7 +95,7 @@ jobs:
       - name: Set up Python
         uses: actions/setup-python@v2
         with:
-          python-version: 3.11
+          python-version: 3.12
 
       - uses: actions/setup-go@v2
         with:
diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md
index 8d3e81efc..4c478c83a 100644
--- a/CONTRIBUTING.md
+++ b/CONTRIBUTING.md
@@ -45,7 +45,7 @@ Check that Python is already installed.
 
     python --version
 
-We have tested with Python `3.11`.
+We have tested with Python `3.12`.
 
 ### BaseSpace
 Set up the [native apps virtual machine][bsvm], and configure a shared folder
diff --git a/Dockerfile b/Dockerfile
index 75bbf4383..3da0caf41 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -24,7 +24,7 @@
 # If you omit the `--target` tag altogether, `docker build` will build
 # the development image.
 
-FROM python:3.11
+FROM python:3.12
 
 MAINTAINER BC CfE in HIV/AIDS https://github.com/cfe-lab/MiCall
 
diff --git a/Singularity b/Singularity
index 41ec83e93..4312bd012 100644
--- a/Singularity
+++ b/Singularity
@@ -1,6 +1,6 @@
 # Generate the Singularity container to run MiCall on Kive.
 Bootstrap: docker
-From: python:3.11
+From: python:3.12
 
 %help
     MiCall maps all the reads from a sample against a set of reference
diff --git a/pyproject.toml b/pyproject.toml
index 4d43dba1d..47ae9fd73 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -8,12 +8,12 @@ authors = [
 license = {text = "AGPL-3.0"}
 license-files = { paths = ["LICENSE.txt"] }
 readme = "README.md"
-requires-python = ">=3.11,<3.12"
+requires-python = ">=3.12,<3.13"
 classifiers = [
     "License :: OSI Approved :: GNU Affero General Public License v3",
     "Programming Language :: Python",
     "Programming Language :: Python :: 3",
-    "Programming Language :: Python :: 3.11",
+    "Programming Language :: Python :: 3.12",
     "Operating System :: OS Independent",
     "Development Status :: 5 - Production/Stable",
     "Intended Audience :: Science/Research",