From 4077ca32f1a3200559aa48c7ff4d24d3d4f0b62b Mon Sep 17 00:00:00 2001
From: Vitaliy Mysak <vmysak@bccfe.ca>
Date: Wed, 4 Dec 2024 15:06:31 -0800
Subject: [PATCH] Reduce k-mer size for Haploflow

---
 micall/core/denovo.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/micall/core/denovo.py b/micall/core/denovo.py
index 43173df08..5c64bcff0 100644
--- a/micall/core/denovo.py
+++ b/micall/core/denovo.py
@@ -59,7 +59,7 @@ def denovo(fastq1_path: Path,
                   'thres': -1,
                   'strict': 5,
                   'error': 0.02,
-                  'kmer': 41,
+                  'kmer': 23,
                   'merge': False,
                   'scaffold': False,
                   'patch': False,