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Cigar tools: fix gaps tests
Build and Test MiCall #1284: Commit 712ef3b pushed by Donaim
November 13, 2023 20:06 23m 55s newfangled-stitching
November 13, 2023 20:06 23m 55s
Cigar tools: fix some more cut edge cases
Build and Test MiCall #1283: Commit 2ea41b8 pushed by Donaim
November 13, 2023 20:06 34m 12s newfangled-stitching
November 13, 2023 20:06 34m 12s
Cigar tools: reimplement CoordinateMapping
Build and Test MiCall #1282: Commit 3fb21ff pushed by Donaim
November 13, 2023 20:06 24m 48s newfangled-stitching
November 13, 2023 20:06 24m 48s
Cigar tools: prevent floating point errors in cut_reference
Build and Test MiCall #1281: Commit 6c6786e pushed by Donaim
November 11, 2023 20:19 24m 30s newfangled-stitching
November 11, 2023 20:19 24m 30s
Cigar tools: prevent floating point errors in cut_reference
Build and Test MiCall #1280: Commit c1318f6 pushed by Donaim
November 11, 2023 20:18 34m 51s newfangled-stitching
November 11, 2023 20:18 34m 51s
Contig stitcher: implement the more precise gap coverage check
Build and Test MiCall #1279: Commit 8888bb7 pushed by Donaim
November 11, 2023 19:56 24m 5s newfangled-stitching
November 11, 2023 19:56 24m 5s
Contig stitcher: rebase gap splitting on the new strip operation
Build and Test MiCall #1278: Commit a2f2c2c pushed by Donaim
November 11, 2023 19:53 38m 1s newfangled-stitching
November 11, 2023 19:53 38m 1s
Cigar tools: reimplement strip operations
Build and Test MiCall #1277: Commit f00d2c7 pushed by Donaim
November 11, 2023 19:53 24m 30s newfangled-stitching
November 11, 2023 19:53 24m 30s
Tests: add two more edge cases for Cigar tools
Build and Test MiCall #1276: Commit 6b2bbd6 pushed by Donaim
November 11, 2023 02:36 1h 23m 56s newfangled-stitching
November 11, 2023 02:36 1h 23m 56s
Cigar tools: improve semantics of "closest"
Build and Test MiCall #1275: Commit 8f41cf5 pushed by Donaim
November 11, 2023 02:19 24m 7s newfangled-stitching
November 11, 2023 02:19 24m 7s
Tests: move fixed_random_seed to shared utils.py file
Build and Test MiCall #1274: Commit 017a93a pushed by Donaim
November 11, 2023 02:07 42m 40s newfangled-stitching
November 11, 2023 02:07 42m 40s
Tests: do not auto-use mock aligner
Build and Test MiCall #1273: Commit ba17fdc pushed by Donaim
November 11, 2023 02:07 48m 6s newfangled-stitching
November 11, 2023 02:07 48m 6s
Cigar tools: improve semantics of "closest"
Build and Test MiCall #1272: Commit d34a2fc pushed by Donaim
November 11, 2023 02:00 10m 58s newfangled-stitching
November 11, 2023 02:00 10m 58s
Cigar tools: improve semantics of "closest"
Build and Test MiCall #1271: Commit 11af360 pushed by Donaim
November 11, 2023 01:56 11m 28s newfangled-stitching
November 11, 2023 01:56 11m 28s
Cigar tools: improve semantics of "closest"
Build and Test MiCall #1270: Commit 0158257 pushed by Donaim
November 11, 2023 01:52 11m 40s newfangled-stitching
November 11, 2023 01:52 11m 40s
Contig stitcher: skip insignificant gaps
Build and Test MiCall #1269: Commit 3cba9d4 pushed by Donaim
November 11, 2023 00:57 42m 3s newfangled-stitching
November 11, 2023 00:57 42m 3s
Cigar tools: distinguish mapped coordinates and all coordinates
Build and Test MiCall #1268: Commit c389ee4 pushed by Donaim
November 11, 2023 00:44 45m 21s newfangled-stitching
November 11, 2023 00:44 45m 21s
Contig stitcher: implement basic gap slicing algorithm
Build and Test MiCall #1267: Commit d1f3a9d pushed by Donaim
November 10, 2023 06:23 23m 9s newfangled-stitching
November 10, 2023 06:23 23m 9s
Contig stitcher: implement basic gap slicing algorithm
Build and Test MiCall #1266: Commit 8256fc1 pushed by Donaim
November 10, 2023 06:22 24m 7s newfangled-stitching
November 10, 2023 06:22 24m 7s
Add gaps() method to CigarHit
Build and Test MiCall #1265: Commit 4bee555 pushed by Donaim
November 10, 2023 06:22 24m 24s newfangled-stitching
November 10, 2023 06:22 24m 24s
Contig stitcher: make align_to_reference a class method
Build and Test MiCall #1264: Commit 8b8443d pushed by Donaim
November 10, 2023 06:22 34m 29s newfangled-stitching
November 10, 2023 06:22 34m 29s
Cigar tools: return coordinates as sets
Build and Test MiCall #1263: Commit b03cbd5 pushed by Donaim
November 10, 2023 04:58 40m 3s newfangled-stitching
November 10, 2023 04:58 40m 3s
Cigar tools: add epsilon quantity for precise cuts
Build and Test MiCall #1262: Commit be32fd0 pushed by Donaim
November 9, 2023 00:14 23m 50s newfangled-stitching
November 9, 2023 00:14 23m 50s
Cigar tools: add getters for coordinate positions
Build and Test MiCall #1261: Commit eeec6a5 pushed by Donaim
November 9, 2023 00:14 24m 24s newfangled-stitching
November 9, 2023 00:14 24m 24s
Contig stitcher: split overlap handling and coverage handling
Build and Test MiCall #1260: Commit 9073573 pushed by Donaim
November 8, 2023 19:36 24m 25s newfangled-stitching
November 8, 2023 19:36 24m 25s