From a4d5c390f1259095cf29a404b6ea0d2f67bd6dc3 Mon Sep 17 00:00:00 2001 From: Vitaliy Mysak Date: Wed, 20 Sep 2023 16:43:03 -0700 Subject: [PATCH] normalize distance to [0, 1) with f(average_dist) = 0.5 --- intact/intact.py | 3 + tests/expected-results-large-csv/orfs.csv | 902 ++++++++++----------- tests/expected-results-large/orfs.json | 902 ++++++++++----------- tests/expected-results-single-csv/orfs.csv | 22 +- tests/expected-results-single/orfs.json | 22 +- tests/expected-results-small-csv/orfs.csv | 110 +-- tests/expected-results-small/orfs.json | 110 +-- 7 files changed, 1037 insertions(+), 1034 deletions(-) diff --git a/intact/intact.py b/intact/intact.py index b8df09a..5b3ec5d 100644 --- a/intact/intact.py +++ b/intact/intact.py @@ -623,6 +623,9 @@ def get_indel_impact(alignment): orf_alignment = (exp_protein, "-" * len(exp_protein)) best_match.distance = aligner.match_score - ((aligner.open_gap_score + len(exp_protein) * aligner.extend_gap_score) / max(1, len(exp_protein))) + average_distance = 0.62 + best_match.distance = 1 - (average_distance / (best_match.distance + average_distance)) # normalise it to the [0, 1) interval, with f(average_distance) = 0.5. + # Max deletion allowed in ORF exceeded if deletions > e.deletion_tolerence: diff --git a/tests/expected-results-large-csv/orfs.csv b/tests/expected-results-large-csv/orfs.csv index c309c8f..a9f4642 100644 --- a/tests/expected-results-large-csv/orfs.csv +++ b/tests/expected-results-large-csv/orfs.csv @@ -1,452 +1,452 @@ seqid,name,start,end,subtype_start,subtype_end,orientation,distance,protein,aminoacids,nucleotides -KX505501.1,env,0,1824,6224,8795,forward,1.9898364485981306,MGARASVLSGGELDRWEKIRLRPGGNKRYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPTLKTGSEELKSLYNTIAVLYCVHQKIDVKDTKEALDKIEEEQNKIRKQAQQTAAAGSSSQVSHNYPVVQNHQGQMVYQALSPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPSHKARVLAEAMSQMTNSATVMMQKGNFRNQRKTVKCFNCGKEGHIARNCRAPRKKGCWKCGREGHQMKDCTERQANFVGKIWPSHKGRPGNFLQNRPEPTAPPAESFRFGEETPTRCIRSTTRTADTELFTRDFPLGTFQ,GLSG*TRSEPGSSLAN*GTHCLSLNKACLECFK*CVPVCCVTLVTRDPSDPFSQCGKSLAVAPEQGPESERETRGALSTQDSAC*ARAARGEGRRLVSTPKIF*LAEARRREMGARASVLSGGELDRWEKIRLRPGGNKRYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPTLKTGSEELKSLYNTIAVLYCVHQKIDVKDTKEALDKIEEEQNKIRKQAQQTAAAGSSSQVSHNYPVVQNHQGQMVYQALSPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPSHKARVLAEAMSQMTNSATVMMQKGNFRNQRKTVKCFNCGKEGHIARNCRAPRKKGCWKCGREGHQMKDCTERQANFVGKIWPSHKGRPGNFLQNRPEPTAPPAESFRFGEETPTRCIRSTTRTADTELFTRDFPLGTFQ*,GGTCTCTCTGGTTAGACCAGATCTGAGCCTGGGAGCTCTCTGGCTAACTAGGGAACCCACTGCTTAAGCCTCAATAAAGCTTGCCTTGAGTGCTTCAAGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGGTAACTAGAGATCCCTCAGACCCTTTTAGTCAGTGTGGAAAATCTCTAGCAGTGGCGCCCGAACAGGGACCTGAAAGCGAAAGGGAAACCAGAGGAGCTCTCTCGACGCAGGACTCGGCTTGCTGAGCGCGCGCAGCAAGAGGCGAGGGGCGGCGACTGGTGAGTACGCCGAAAATTTTTTGACTAGCGGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAGAATTGGATAGATGGGAAAAAATTCGGCTAAGGCCAGGAGGAAATAAAAGATATAAACTAAAACATATAGTATGGGCAAGCAGAGAGCTAGAACGATTCGCAGTTAATCCTGGCCTGCTAGAAACATCAGAAGGCTGTAGACAAATACTGGGACAGCTACAACCGACTCTTAAGACAGGATCAGAAGAACTTAAGTCTTTGTATAATACAATAGCAGTCCTCTATTGTGTACATCAAAAAATAGATGTGAAAGACACCAAGGAAGCCTTAGACAAGATAGAAGAAGAGCAAAACAAAATTAGGAAACAAGCACAGCAAACCGCAGCTGCAGGAAGTAGCAGTCAGGTCAGCCACAATTACCCTGTAGTGCAGAATCATCAGGGGCAAATGGTATATCAGGCCCTGTCACCAAGAACTTTAAATGCATGGGTAAAAGTAATAGAGGAAAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGACTTAAACACCATGCTAAATACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATTAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGATGACAAATAATCCACCTATCCCAGTAGGAGAGATTTATAAAAGATGGATAATCCTAGGGTTAAATAAAATAGTAAGAATGTATAGCCCTGTCAGCATTCTGGACATAAGACAAGGACCAAAGGAACCTTTTAGAGACTATGTAGACCGGTTCTATAAAACCCTAAGAGCCGAACAAGCCACACAGGAAGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAGAATGCGAACCCAGATTGTAAAACTATTTTAAAAGCATTAGGACCAGCAGCCACACTAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCCAGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAATGACAAATTCAGCTACAGTAATGATGCAGAAAGGCAATTTTAGGAACCAAAGAAAAACTGTTAAGTGCTTCAATTGTGGCAAAGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGAAAAAAGGGCTGTTGGAAATGTGGAAGGGAAGGACATCAAATGAAAGACTGTACTGAGAGACAGGCTAATTTTGTAGGGAAAATCTGGCCTTCCCACAAGGGAAGGCCGGGGAATTTCCTTCAGAACAGACCAGAGCCAACAGCCCCACCAGCAGAGAGCTTCAGGTTTGGGGAAGAGACACCAACTAGATGCATCCGGAGTACTACAAGGACTGCTGACACTGAGCTTTTCACAAGGGACTTTCCGCTGGGGACTTTCCAGTAG -KX505501.1,gag,336,1824,789,2292,forward,0.3622000000000025,MGARASVLSGGELDRWEKIRLRPGGNKRYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPTLKTGSEELKSLYNTIAVLYCVHQKIDVKDTKEALDKIEEEQNKIRKQAQQTAAAGSSSQVSHNYPVVQNHQGQMVYQALSPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPSHKARVLAEAMSQMTNSATVMMQKGNFRNQRKTVKCFNCGKEGHIARNCRAPRKKGCWKCGREGHQMKDCTERQANFVGKIWPSHKGRPGNFLQNRPEPTAPPAESFRFGEETPTRCIRSTTRTADTELFTRDFPLGTFQ,MGARASVLSGGELDRWEKIRLRPGGNKRYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPTLKTGSEELKSLYNTIAVLYCVHQKIDVKDTKEALDKIEEEQNKIRKQAQQTAAAGSSSQVSHNYPVVQNHQGQMVYQALSPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPSHKARVLAEAMSQMTNSATVMMQKGNFRNQRKTVKCFNCGKEGHIARNCRAPRKKGCWKCGREGHQMKDCTERQANFVGKIWPSHKGRPGNFLQNRPEPTAPPAESFRFGEETPTRCIRSTTRTADTELFTRDFPLGTFQ*,ATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAGAATTGGATAGATGGGAAAAAATTCGGCTAAGGCCAGGAGGAAATAAAAGATATAAACTAAAACATATAGTATGGGCAAGCAGAGAGCTAGAACGATTCGCAGTTAATCCTGGCCTGCTAGAAACATCAGAAGGCTGTAGACAAATACTGGGACAGCTACAACCGACTCTTAAGACAGGATCAGAAGAACTTAAGTCTTTGTATAATACAATAGCAGTCCTCTATTGTGTACATCAAAAAATAGATGTGAAAGACACCAAGGAAGCCTTAGACAAGATAGAAGAAGAGCAAAACAAAATTAGGAAACAAGCACAGCAAACCGCAGCTGCAGGAAGTAGCAGTCAGGTCAGCCACAATTACCCTGTAGTGCAGAATCATCAGGGGCAAATGGTATATCAGGCCCTGTCACCAAGAACTTTAAATGCATGGGTAAAAGTAATAGAGGAAAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGACTTAAACACCATGCTAAATACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATTAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGATGACAAATAATCCACCTATCCCAGTAGGAGAGATTTATAAAAGATGGATAATCCTAGGGTTAAATAAAATAGTAAGAATGTATAGCCCTGTCAGCATTCTGGACATAAGACAAGGACCAAAGGAACCTTTTAGAGACTATGTAGACCGGTTCTATAAAACCCTAAGAGCCGAACAAGCCACACAGGAAGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAGAATGCGAACCCAGATTGTAAAACTATTTTAAAAGCATTAGGACCAGCAGCCACACTAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCCAGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAATGACAAATTCAGCTACAGTAATGATGCAGAAAGGCAATTTTAGGAACCAAAGAAAAACTGTTAAGTGCTTCAATTGTGGCAAAGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGAAAAAAGGGCTGTTGGAAATGTGGAAGGGAAGGACATCAAATGAAAGACTGTACTGAGAGACAGGCTAATTTTGTAGGGAAAATCTGGCCTTCCCACAAGGGAAGGCCGGGGAATTTCCTTCAGAACAGACCAGAGCCAACAGCCCCACCAGCAGAGAGCTTCAGGTTTGGGGAAGAGACACCAACTAGATGCATCCGGAGTACTACAAGGACTGCTGACACTGAGCTTTTCACAAGGGACTTTCCGCTGGGGACTTTCCAGTAG -KX505501.1,vif,1306,1927,5040,5619,forward,2.1463541666666663,MRTQIVKLF,MRTQIVKLF*KH*DQQPH*KK**QHAREWEDPAIKQEFWLKQ*AK*QIQLQ**CRKAILGTKEKLLSASIVAKKGT*PEIAGPLEKRAVGNVEGKDIK*KTVLRDRLIL*GKSGLPTREGRGISFRTDQSQQPHQQRASGLGKRHQLDASGVLQGLLTLSFSQGTFRWGLSSRGVAWAGLGSGEPSDAAYKQLLSACTRSLWLDQI*,ATGCGAACCCAGATTGTAAAACTATTTTAAAAGCATTAGGACCAGCAGCCACACTAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCCAGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAATGACAAATTCAGCTACAGTAATGATGCAGAAAGGCAATTTTAGGAACCAAAGAAAAACTGTTAAGTGCTTCAATTGTGGCAAAGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGAAAAAAGGGCTGTTGGAAATGTGGAAGGGAAGGACATCAAATGAAAGACTGTACTGAGAGACAGGCTAATTTTGTAGGGAAAATCTGGCCTTCCCACAAGGGAAGGCCGGGGAATTTCCTTCAGAACAGACCAGAGCCAACAGCCCCACCAGCAGAGAGCTTCAGGTTTGGGGAAGAGACACCAACTAGATGCATCCGGAGTACTACAAGGACTGCTGACACTGAGCTTTTCACAAGGGACTTTCCGCTGGGGACTTTCCAGTAGGGGCGTGGCCTGGGCGGGACTGGGGAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTCTGCCTGTACGAGGTCTCTCTGGTTAGACCAGATCTGA -KX505501.1,nef,1306,1927,8796,9417,forward,2.1430894308943085,MRTQIVKLF,MRTQIVKLF*KH*DQQPH*KK**QHAREWEDPAIKQEFWLKQ*AK*QIQLQ**CRKAILGTKEKLLSASIVAKKGT*PEIAGPLEKRAVGNVEGKDIK*KTVLRDRLIL*GKSGLPTREGRGISFRTDQSQQPHQQRASGLGKRHQLDASGVLQGLLTLSFSQGTFRWGLSSRGVAWAGLGSGEPSDAAYKQLLSACTRSLWLDQI*,ATGCGAACCCAGATTGTAAAACTATTTTAAAAGCATTAGGACCAGCAGCCACACTAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCCAGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAATGACAAATTCAGCTACAGTAATGATGCAGAAAGGCAATTTTAGGAACCAAAGAAAAACTGTTAAGTGCTTCAATTGTGGCAAAGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGAAAAAAGGGCTGTTGGAAATGTGGAAGGGAAGGACATCAAATGAAAGACTGTACTGAGAGACAGGCTAATTTTGTAGGGAAAATCTGGCCTTCCCACAAGGGAAGGCCGGGGAATTTCCTTCAGAACAGACCAGAGCCAACAGCCCCACCAGCAGAGAGCTTCAGGTTTGGGGAAGAGACACCAACTAGATGCATCCGGAGTACTACAAGGACTGCTGACACTGAGCTTTTCACAAGGGACTTTCCGCTGGGGACTTTCCAGTAGGGGCGTGGCCTGGGCGGGACTGGGGAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTCTGCCTGTACGAGGTCTCTCTGGTTAGACCAGATCTGA -KX505501.1,pol,1628,1748,2084,5096,forward,2.1349950149551358,FCRENLAFPQGKAGEFPSEQTRANSPTSRELQVWGRDTN,FCRENLAFPQGKAGEFPSEQTRANSPTSRELQVWGRDTN*,TTTTGTAGGGAAAATCTGGCCTTCCCACAAGGGAAGGCCGGGGAATTTCCTTCAGAACAGACCAGAGCCAACAGCCCCACCAGCAGAGAGCTTCAGGTTTGGGGAAGAGACACCAACTAG -KX505501.1,tat_exon2,1746,1824,8376,8469,forward,2.12,RCIRSTTRTADTELFTRDFPLGTFQ,RCIRSTTRTADTELFTRDFPLGTFQ*,AGATGCATCCGGAGTACTACAAGGACTGCTGACACTGAGCTTTTCACAAGGGACTTTCCGCTGGGGACTTTCCAGTAG -KX505501.1,vpu,1747,1927,6061,6310,forward,2.098780487804878,DASGVLQGLLTLSFSQGTFRWGLSSRGVAWAGLGSGEPSDAAYKQLLSACTRSLWLDQI,DASGVLQGLLTLSFSQGTFRWGLSSRGVAWAGLGSGEPSDAAYKQLLSACTRSLWLDQI*,GATGCATCCGGAGTACTACAAGGACTGCTGACACTGAGCTTTTCACAAGGGACTTTCCGCTGGGGACTTTCCAGTAGGGGCGTGGCCTGGGCGGGACTGGGGAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTCTGCCTGTACGAGGTCTCTCTGGTTAGACCAGATCTGA -KX505501.1,rev_exon2,1747,1927,8377,8653,forward,1.9802197802197803,DASGVLQGLLTLSFSQGTFRWGLSSRGVAWAGLGSGEPSDAAYKQLLSACTRSLWLDQI,DASGVLQGLLTLSFSQGTFRWGLSSRGVAWAGLGSGEPSDAAYKQLLSACTRSLWLDQI*,GATGCATCCGGAGTACTACAAGGACTGCTGACACTGAGCTTTTCACAAGGGACTTTCCGCTGGGGACTTTCCAGTAGGGGCGTGGCCTGGGCGGGACTGGGGAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTCTGCCTGTACGAGGTCTCTCTGGTTAGACCAGATCTGA -KX505501.1,vpr,1748,1751,5558,5850,forward,2.1884615384615382,M,M,ATG -KX505501.1,tat_exon1,1748,1751,5830,6045,forward,2.1875,M,M,ATG -KX505501.1,rev_exon1,1748,1751,5969,6045,forward,2.1653846153846152,M,M,ATG -MN691959,gag,639,2142,789,2292,forward,0.05400000000000005,MGARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALEKIEEEQNKSKKKAQQAAADTGHSNQISQNYPIVQNIQGQVVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNXXXPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRNQRKIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKECTERQANFLGKIWPSYKGRPGNFLQSRPEPTAPPEESFRSGVETTTPSQKQEPIDKELYPLTSLRSLFGNDPSSQ,MGARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALEKIEEEQNKSKKKAQQAAADTGHSNQISQNYPIVQNIQGQVVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNXXXPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRNQRKIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKECTERQANFLGKIWPSYKGRPGNFLQSRPEPTAPPEESFRSGVETTTPSQKQEPIDKELYPLTSLRSLFGNDPSSQ*,ATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAGAATTAGATCGATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAAATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTTAATCCTGGCCTGTTAGAAACATCAGAAGGCTGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAGATCATTATATAATACAGTAGCAACCCTCTATTGTGTGCATCAAAGGATAGAGATAAAAGACACCAAGGAAGCTTTAGAGAAGATAGAGGAAGAGCAAAACAAAAGTAAGAAAAAAGCACAGCAAGCAGCAGCTGACACAGGACACAGCAACCAGATCAGCCAAAATTACCCTATAGTGCAGAACATCCAGGGGCAAGTGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATCAATGAGGAAGCTGCAGAATGGGATAGAGTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGGATGGATGACAAATAATCYWYCTWTCCCAGTAGGAGAAATTTATAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGAATGTATAGCCCTACCAGCATTCTGGACATAAGACAAGGACCAAAAGAACCCTTTAGAGACTATGTAGACCGGTTCTATAAAACTCTAAGAGCCGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAACCCAGATTGTAAGACTATTTTAAAAGCATTGGGACCWGCAGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCCGGCCATAAGGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAACAAATTCAGCTACCATAATGATGCAGAGAGGCAATTTTAGGAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGAGTGTACTGAGAGACAGGCTAATTTTTTAGGGAAGATCTGGCCTTCCTACAAGGGAAGGCCAGGGAATTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTCTGGGGTAGAGACAACAACTCCCTCTCAGAAGCAGGAGCCGATAGACAAGGAACTGTATCCTTTAACTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAA -MN691959,pol,1934,4946,2084,5096,forward,0.03589232303090717,FFREDLAFLQGKAREFSSEQTRANSPTRRELQVWGRDNNSLSEAGADRQGTVSFNFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTRALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKITTESIVIWGKTPRFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKILFLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED,FFREDLAFLQGKAREFSSEQTRANSPTRRELQVWGRDNNSLSEAGADRQGTVSFNFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTRALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKITTESIVIWGKTPRFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKILFLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAGATCTGGCCTTCCTACAAGGGAAGGCCAGGGAATTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTCTGGGGTAGAGACAACAACTCCCTCTCAGAAGCAGGAGCCGATAGACAAGGAACTGTATCCTTTAACTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACTCATAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGATTGGTTGCACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAAAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCCGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATGAAGACTTCAGGAAGTATACTGCATTTACCATACCTAGTATAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGACATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAGCTGAGACAACATCTGTTGAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTGAATTGGGCAAGTCAGATTTACCCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAGAGCATTAACAGAAGTAATACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTCTAAAAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAGCAGGGGCAAGGCCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGGAAATATGCAAGAACGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGTATAGTAATATGGGGAAAGACTCCTAGATTTAAACTACCCATACAAAAGGAAACATGGGAAACATGGTGGACAGAATATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCTTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGGTATGTTACTAACAAAGGAAGACAAAAGGTTGTCCCCCTAACTAACACAACAAATCAGAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATCAAAGTGAATCAGAGTTAGTCAATCAAATAATAGAGCAGTTAATAAAAAAGGAAAAGGTCTATCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTGCTGGAATCAGGAAAATACTATTTTTAGATGGAATAGATAAGGCCCAAGATGAACATGAGAAATATCACAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGAGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAACTAGATTGTACACATTTAGAAGGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAAACAGGGCAGGAAACAGCATATTTTCTTTTAAAATTAGCAGGAAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTGCTACGGTTAAGGCCGCCTGTTGGTGGGCGGGAATCAAGCAGGAATTTGGAATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTCCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGACATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG -MN691959,vif,4890,5469,5040,5619,forward,0.0625,MENRWQVMIVWQVDRMRIRTWKSLVKHHMYVSGKARGWFYRHHYERTHPRISSEVYIPLGDARLVITTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPELADQLIHLYYFDCFSDSAIRKALLGHIVSPRCEYQAGHNKVGSLQYLALAALITPKKIKPPLPSVTKLTEDRWNKPQKTKGHRGSHTMNGH,MENRWQVMIVWQVDRMRIRTWKSLVKHHMYVSGKARGWFYRHHYERTHPRISSEVYIPLGDARLVITTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPELADQLIHLYYFDCFSDSAIRKALLGHIVSPRCEYQAGHNKVGSLQYLALAALITPKKIKPPLPSVTKLTEDRWNKPQKTKGHRGSHTMNGH*,ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAAAAGTTTAGTAAAACACCATATGTATGTTTCAGGGAAAGCTAGGGGATGGTTTTATAGACATCACTATGAAAGAACTCATCCAAGAATAAGTTCAGAAGTATACATCCCACTAGGGGATGCTAGATTGGTAATAACAACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGGAAAAGGAGATATAGCACACAAGTAGACCCTGAACTAGCAGACCAACTAATTCATCTGTATTACTTTGACTGTTTTTCAGACTCTGCTATAAGAAAGGCCTTATTAGGACATATAGTTAGCCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGATCTCTACAATACTTGGCACTAGCAGCATTAATAACACCAAAAAAGATAAAGCCACCTTTGCCTAGTGTTACAAAACTGACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCACACAATGAATGGACACTAG -MN691959,vpr,5408,5702,5558,5850,forward,0.21153846153845945,MEQAPEDQGPQREPHNEWTLELLEELKNEAVRHFPRIWLHGLGQHIYETYGDTWAGVEAIIRILQQLLFIHFRIGCRHSRIGVTQQKRARNGASRS,MEQAPEDQGPQREPHNEWTLELLEELKNEAVRHFPRIWLHGLGQHIYETYGDTWAGVEAIIRILQQLLFIHFRIGCRHSRIGVTQQKRARNGASRS*T,ATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCACACAATGAATGGACACTAGAGCTTTTAGAGGAGCTTAAGAATGAAGCTGTTAGACATTTTCCTAGGATTTGGCTCCATGGCTTAGGGCAACATATCTATGAAACTTATGGGGATACTTGGGCAGGAGTGGAAGCCATAATAAGAATTCTGCAACAACTGCTGTTTATCCATTTCAGAATTGGGTGTCGACATAGCAGAATAGGCGTTACTCAACAGAAGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACT -MN691959,tat_exon1,5679,5895,5830,6045,forward,0.29166666666666674,MEPVDPRLEPWKHPGSQPKTACTTCYCKKCCFHCQVCFMTKALGISYGRKKRRQRRRPPQDSQTHQVSLSKQ,MEPVDPRLEPWKHPGSQPKTACTTCYCKKCCFHCQVCFMTKALGISYGRKKRRQRRRPPQDSQTHQVSLSKQ,ATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCATCCAGGAAGTCAGCCTAAAACTGCTTGTACCACTTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATGACAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGACCTCCTCAAGACAGTCAGACTCATCAAGTTTCTCTATCAAAGCAG -MN691959,rev_exon1,5818,5896,5969,6045,forward,0.5769230769230769,MAGRSGDSDEDLLKTVRLIKFLYQSS,MAGRSGDSDEDLLKTVRLIKFLYQSS,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGACCTCCTCAAGACAGTCAGACTCATCAAGTTTCTCTATCAAAGCAGT -MN691959,vpu,5910,6156,6061,6310,forward,0.7060975609756097,SIVIIEYRKILRQRKIDRLIDRLIERAEDSGNESEGEVSALVEMGVEMGHHAPWDIDDL,MQPIQIAIVALVVAIIIAIVV*SIVIIEYRKILRQRKIDRLIDRLIERAEDSGNESEGEVSALVEMGVEMGHHAPWDIDDL*,ATGCAACCTATACAAATAGCAATAGTAGCATTAGTAGTAGCAATAATAATAGCAATAGTTGTGTGATCCATAGTAATCATAGAATATAGGAAAATATTAAGACAAAGGAAAATAGACAGGTTAATTGATAGACTAATAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGAGAAGTGTCAGCACTTGTGGAGATGGGGGTGGAGATGGGGCACCATGCTCCTTGGGATATTGATGATCTGTAG -MN691959,env,6070,8683,6224,8795,forward,0.0867990654205606,MRVKEKCQHLWRWGWRWGTMLLGILMICSATEKLWVTVYYGVPVWKEATTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEVVLVNVTENFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVSLKCTDLGNATNTNSSNTNSSSGEMMMEKGEIKNCSFNISTSIRNKVQKEYAFFYKLDIVPIDNDTTSYTLTSCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNNKTFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEDVVIRSANFTDNAKTIIVQLNQSVEINCTRPNNNTRKSIRIQRGPGRAFVTIGKIGNMRQAHCNISRAKWNATLKQIASKLREQFGNNKTIIFKQSSGGDPEIVTHSFNCGGEFFYCNSTQLFNSTWFNSTWSTEGSNNTEGSDTITLPCRIKQFINMWQEVGKAMYAPPISGQIRCSSNITGLLLTRDGGNNNNGSEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQREKRAVGIGALFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARILAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKSLEQIWNNMTWMEWDREINNYTSLIHSLIEESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGGLVGLRIVFAVLSIVNRVRQGYSPLSFQTHLPNPGGPDRPEGIEEEGGERDRDRSIRLVNGSLALIWDDLRSLCLFSYHRLRDLLLIVTRIVELLGRRGWEALKYWWNLLQYWSQELKNSAVSLLNATAIAVAEGTDRVIEVVQGAYRAIRHIPRRIRQGLERILL,MRVKEKCQHLWRWGWRWGTMLLGILMICSATEKLWVTVYYGVPVWKEATTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEVVLVNVTENFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVSLKCTDLGNATNTNSSNTNSSSGEMMMEKGEIKNCSFNISTSIRNKVQKEYAFFYKLDIVPIDNDTTSYTLTSCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNNKTFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEDVVIRSANFTDNAKTIIVQLNQSVEINCTRPNNNTRKSIRIQRGPGRAFVTIGKIGNMRQAHCNISRAKWNATLKQIASKLREQFGNNKTIIFKQSSGGDPEIVTHSFNCGGEFFYCNSTQLFNSTWFNSTWSTEGSNNTEGSDTITLPCRIKQFINMWQEVGKAMYAPPISGQIRCSSNITGLLLTRDGGNNNNGSEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQREKRAVGIGALFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARILAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKSLEQIWNNMTWMEWDREINNYTSLIHSLIEESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGGLVGLRIVFAVLSIVNRVRQGYSPLSFQTHLPNPGGPDRPEGIEEEGGERDRDRSIRLVNGSLALIWDDLRSLCLFSYHRLRDLLLIVTRIVELLGRRGWEALKYWWNLLQYWSQELKNSAVSLLNATAIAVAEGTDRVIEVVQGAYRAIRHIPRRIRQGLERILL*DGWQVVKK*,ATGAGAGTGAAGGAGAAGTGTCAGCACTTGTGGAGATGGGGGTGGAGATGGGGCACCATGCTCCTTGGGATATTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAAGGAAGCAACCACCACTCTATTTTGTGCATCAGATGCTAAAGCATATGATGCAGAGGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGTATTGGTAAATGTGACAGAAAATTTTAACATGTGGAAAAATGACATGGTAGAACAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTAGTTTAAAGTGCACTGATTTGGGGAATGCTACTAATACCAATAGTAGTAATACCAATAGTAGTAGCGGGGAAATGATGATGGAGAAAGGAGAGATAAAAAACTGCTCTTTCAATATCAGCACAAGCATAAGAAATAAGGTGCAGAAAGAATATGCATTCTTTTATAAACTTGATATAGTACCAATAGATAATGATACTACCAGCTATACGTTGACAAGTTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAATGTAATAATAAGACGTTCAATGGAACAGGACCATGTACAAATGTCAGCACAGTACAATGTACACATGGAATTAGGCCAGTAGTATCAACTCAACTGCTGTTAAATGGCAGTCTAGCAGAAGAAGATGTAGTAATTAGATCTGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTGAACCAATCTGTAGAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATCCGTATCCAGAGAGGACCAGGGAGAGCATTTGTTACAATAGGAAAAATAGGAAATATGAGACAAGCACATTGTAACATTAGTAGAGCAAAATGGAATGCCACTTTAAAACAGATAGCTAGCAAATTAAGAGAACAATTTGGAAATAATAAAACAATAATCTTTAAGCAATCCTCAGGAGGGGACCCAGAAATTGTAACGCACAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAATTCAACACAACTGTTTAATAGTACTTGGTTTAATAGTACTTGGAGTACTGAAGGGTCAAATAACACTGAAGGAAGTGACACAATCACACTCCCATGCAGAATAAAACAATTTATAAACATGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCATCAGCGGACAAATTAGATGTTCATCAAATATTACAGGGCTGCTATTAACAAGAGATGGTGGTAATAACAACAATGGGTCCGAGATCTTCAGACCTGGAGGAGGAGATATGAGGGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAAAATTGAACCATTAGGAGTAGCACCCACCAAGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTTTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAATGACGCTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAGCAGCAGAACAATTTGCTGAGGGCTATTGAGGCGCAACAGCATCTGTTGCAACTCACAGTCTGGGGCATCAAACAGCTCCAGGCAAGAATCCTGGCTGTGGAAAGATACCTAAAGGATCAACAGCTCCTGGGGATTTGGGGCTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCTTGGAATGCTAGTTGGAGTAATAAATCTCTGGAACAGATTTGGAATAACATGACCTGGATGGAGTGGGACAGAGAAATTAACAATTACACAAGCTTAATACACTCCTTAATTGAAGAATCGCAAAACCAGCAAGAAAAGAATGAACAAGAATTATTGGAATTAGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAATTGGCTGTGGTATATAAAATTATTCATAATGATAGTAGGAGGCTTGGTAGGTTTAAGAATAGTTTTTGCTGTACTTTCTATAGTGAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAAACCCGGGGGGACCCGACAGGCCCGAAGGAATAGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCATTCGATTAGTGAACGGATCCTTAGCACTTATCTGGGACGATCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAATATTGGTGGAATCTCCTACAATATTGGAGTCAGGAGCTAAAGAATAGTGCTGTTAGCTTGCTCAATGCCACAGCTATAGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAGGAGCTTATAGAGCTATTCGCCACATACCTAGAAGAATAAGACAGGGCTTGGAAAGGATTTTGCTATAAGATGGGTGGCAAGTGGTCAAAAAGTAG -MN691959,tat_exon2,8237,8333,8376,8469,forward,0.19999999999999996,RPTSQTRGDPTGPKE,RPTSQTRGDPTGPKE*KKKVERETETDPFD**,AGACCCACCTCCCAAACCCGGGGGGACCCGACAGGCCCGAAGGAATAGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCATTCGATTAGTGA -MN691959,rev_exon2,8238,8514,8377,8653,forward,0.16483516483516492,DPPPKPGGTRQARRNRRRRWRERQRQIHSISERILSTYLGRSAEPVPLQLPPLERLTLDCNEDCGTSGTQGVGSPQILVESPTILESGAKE,DPPPKPGGTRQARRNRRRRWRERQRQIHSISERILSTYLGRSAEPVPLQLPPLERLTLDCNEDCGTSGTQGVGSPQILVESPTILESGAKE*,GACCCACCTCCCAAACCCGGGGGGACCCGACAGGCCCGAAGGAATAGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCATTCGATTAGTGAACGGATCCTTAGCACTTATCTGGGACGATCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAATATTGGTGGAATCTCCTACAATATTGGAGTCAGGAGCTAAAGAATAG -MN691959,nef,8657,9278,8796,9417,forward,0.16991869918698432,MGGKWSKSSVIGWPTVRERMRRAEPAADGVGAASRDLEKHGAITSSNTAATNAACAWLEAQEEEEVGFPVTPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIHSQRRQDILDLWIYHTQGYFPDWQNYTPGPGIRYPLTFGWCYKLVPVEPDKVEEANKGENTSLLHPVSLHGMDDPEREVLEWRFDSRLAFHHVARELHPEYFKNC,MGGKWSKSSVIGWPTVRERMRRAEPAADGVGAASRDLEKHGAITSSNTAATNAACAWLEAQEEEEVGFPVTPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIHSQRRQDILDLWIYHTQGYFPDWQNYTPGPGIRYPLTFGWCYKLVPVEPDKVEEANKGENTSLLHPVSLHGMDDPEREVLEWRFDSRLAFHHVARELHPEYFKNC*,ATGGGTGGCAAGTGGTCAAAAAGTAGTGTGATTGGATGGCCTACTGTAAGGGAAAGAATGAGACGAGCTGAGCCAGCAGCAGATGGGGTGGGAGCAGCATCTCGAGACCTGGAAAAACATGGAGCAATCACAAGTAGCAATACAGCAGCTACCAATGCTGCTTGTGCCTGGCTAGAAGCACAAGAGGAGGAGGAGGTGGGTTTTCCAGTCACACCTCAGGTACCTTTAAGACCAATGACTTACAAGGCAGCTGTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCACTCCCAAAGAAGACAAGATATCCTTGATCTGTGGATCTACCACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGATCAGATATCCATTGACCTTTGGATGGTGCTACAAGCTAGTACCAGTTGAGCCAGATAAGGTAGAAGAGGCCAATAAAGGAGAGAACACCAGCTTGTTACACCCTGTGAGCCTGCATGGAATGGATGACCCTGAGAGAGAAGTGTTAGAGTGGAGGTTTGACAGCCGCCTAGCATTTCATCACGTGGCCCGAGAGCTGCATCCGGAGTACTTCAAGAACTGCTGA -MN692074,env,2,4115,6224,8795,forward,1.9582943925233647,MNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLRKKKSVTVLDVGDAYFSVPLDKEFRKYTAFTIPSRNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPEIVIYQYMDDLYVGSDLEIGQHRIKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEIVPLTKEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYAKMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDTQWRALRCCI,EGLIWSQKRQDILDLWIYHTQGYFPDWQNYTPGPGTRFPLTFGWCFKLVPVDPEKVEEANAGENNSLLHPISLHGMEDPEKEVLMWKFDSRLAFHHMARELHPEYYKNC*LRAIYKGLSAGDFPGRRGLGGTGEWRALRCCI*AAAFCLYWVSLVRPDLSLGALWLAREPTA*ASIKLALSALSSVCPSVV*LW*LEIPQTLLVSVENL*QWRPNRDLKAKEKPEELSRRRTRLAEARTARGEGRRLVSTPKILTSGG*KERDGCESVSIKCGRIRQMGKNSVKARGKEKI*IKTYSMGKQGARTIRS*SWPVRNIRRL*TNTGTATTIPSDRIRRT*III*YNSNPLLCASKDRGKRHQGSFREGRGRAKQK*EKGTASSS*HRKQQPGQPKLPYSAEHPGANGTSGHIT*NFKCMGKSSRREGFQPRSNTHVFSIIRRSHPTRFKHHAKHSGGTSSSHANVKRDHQ*GSCRMG*IAPSACRAYCTRPDERAKGK*HSRNY*YPSGTNRMDDK*STYPSRRNL*KMDNHGIK*NSKDV*SYQHSGHKTRTKGTL*RLCRSVL*NSKSRASFTGGKKLDDRNLVGPKCEPRL*DYFESIGTSRYIRRNDDSMSGSGRTRP*SKSFGGSNEPSNKFSYHNDAERQF*EPKKEC*VFQLWQRRAHSQKLQGP*EKGLLEMWKGRTPNERLY*ETG*FFREDLAFPQGKAREFPSEQTRANSPTRRELQVWGRDNNSRSEAGADRQGTVSFSFPQITLWQRPLVTIRIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLRKKKSVTVLDVGDAYFSVPLDKEFRKYTAFTIPSRNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPEIVIYQYMDDLYVGSDLEIGQHRIKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEIVPLTKEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYAKMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDTQWRALRCCI*,GAAGGGCTAATTTGGTCCCAGAAAAGACAAGATATCCTTGATCTGTGGATCTACCACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCGGGGACCAGATTTCCACTGACCTTTGGATGGTGCTTCAAGCTAGTACCAGTTGATCCAGAGAAGGTAGAAGAGGCCAATGCAGGAGAGAACAACAGCTTGTTACACCCTATAAGCCTGCATGGGATGGAGGACCCGGAGAAAGAAGTGTTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCACATGGCCCGAGAGCTGCATCCGGAGTACTACAAGAATTGCTGACTTCGAGCTATCTACAAGGGACTTTCCGCTGGGGACTTTCCAGGGAGGCGTGGCCTGGGCGGGACTGGGGAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTTTGCCTGTACTGGGTCTCTCTGGTTAGACCAGATCTGAGCCTGGGAGCTCTCTGGCTAGCTAGGGAACCCACTGCTTAAGCCTCAATAAAGCTTGCCTTGAGTGCTTTAAGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGGTAACTAGAGATCCCTCAGACCCTTTTAGTCAGTGTGGAAAATCTCTAGCAGTGGCGCCCGAACAGGGACTTGAAAGCGAAAGAGAAACCAGAGGAGCTCTCTCGACGCAGGACTCGGCTTGCTGAAGCGCGCACGGCAAGAGGCGAGGGGCGGCGACTGGTGAGTACGCCAAAAATTTTGACTAGCGGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCGTCAGTATTAAGTGCGGGAGAATTAGACAAATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTTAATCCTGGCCTGTTAGAAACATCAGAAGGCTGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAGATCATTATATAATACAATAGCAACCCTCTATTGTGTGCATCAAAAGATAGAGGTAAAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGCAGCAGCTGACACAGGAAACAACAGCCAGGTCAGCCAAAATTACCCTATAGTGCAGAACATCCAGGGGCAAATGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCACCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAGCCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGGATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCATGGGATTAAATAAAATAGTAAGGATGTATAGTCCTACCAGCATTCTGGACATAAGACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGATCGGTTCTATAAAACTCTAAGAGCCGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAACCCAGATTGTAAGACTATTTTGAAAGCATTGGGACCAGCCGCTACATTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCCGGCCATAAAGCAAGAGTTTTGGCGGAAGCAATGAGCCAAGTAACAAATTCAGCTACCATAATGATGCAGAAAGGCAATTTTAGGAACCAAAAAAGGAATGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGGAAAAGGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGATTGTACTGAGAGACAGGCTAATTTTTTAGGGAAGATCTGGCCTTCCCACAAGGGAAGGCCAGGGAATTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAACAACTCCCGCTCAGAAGCAGGAGCCGATAGACAAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAAGGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAATTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACTCATAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGATTGGTTGCACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCCGCAGGGTTAAGAAAGAAAAAATCAGTAACAGTACTGGATGTGGGGGATGCATATTTTTCAGTTCCCTTAGATAAAGAATTTAGGAAATATACTGCATTTACCATACCCAGTAGAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATTTTAGAGCCTTTTAGAAAACAAAATCCAGAAATAGTTATCTATCAATACATGGATGATTTATATGTAGGATCTGATTTAGAAATAGGGCAGCATAGAATAAAAATAGAGGAACTGAGACAACATCTGTTGAGATGGGGATTTACCACACCAGACAAAAAACATCAGAAAGAACCCCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTGAATTGGGCAAGTCAGATTTACCCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAAATAGTACCACTAACAAAAGAAGCAGAGCTGGAACTGGCAGAAAACAGGGAAATTCTAAAAGAACCAGTACATGGAGTATATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAGCAGGGGCAAGGTCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAAAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTACCCATACAAAAAGAAACATGGGAAGCATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAACAGAGGAAGACAAAAAGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAATTACAAGCAATTCATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATACCCAGTGGCGAGCCCTCAGATGCTGCATATAA -MN692074,gag,789,2292,789,2292,forward,0.13880000000000003,MGARASVLSAGELDKWEKIRLRPGGKKKYRLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTIATLYCVHQKIEVKDTKEALEKVEEEQNKSKKKAQQAAADTGNNSQVSQNYPIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIIMGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSATIMMQKGNFRNQKRNVKCFNCGKEGHIARNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETTTPAQKQEPIDKELYPLASLRSLFGNDPSSQ,MGARASVLSAGELDKWEKIRLRPGGKKKYRLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTIATLYCVHQKIEVKDTKEALEKVEEEQNKSKKKAQQAAADTGNNSQVSQNYPIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIIMGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSATIMMQKGNFRNQKRNVKCFNCGKEGHIARNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETTTPAQKQEPIDKELYPLASLRSLFGNDPSSQ*,ATGGGTGCGAGAGCGTCAGTATTAAGTGCGGGAGAATTAGACAAATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTTAATCCTGGCCTGTTAGAAACATCAGAAGGCTGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAGATCATTATATAATACAATAGCAACCCTCTATTGTGTGCATCAAAAGATAGAGGTAAAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGCAGCAGCTGACACAGGAAACAACAGCCAGGTCAGCCAAAATTACCCTATAGTGCAGAACATCCAGGGGCAAATGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCACCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAGCCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGGATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCATGGGATTAAATAAAATAGTAAGGATGTATAGTCCTACCAGCATTCTGGACATAAGACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGATCGGTTCTATAAAACTCTAAGAGCCGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAACCCAGATTGTAAGACTATTTTGAAAGCATTGGGACCAGCCGCTACATTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCCGGCCATAAAGCAAGAGTTTTGGCGGAAGCAATGAGCCAAGTAACAAATTCAGCTACCATAATGATGCAGAAAGGCAATTTTAGGAACCAAAAAAGGAATGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGGAAAAGGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGATTGTACTGAGAGACAGGCTAATTTTTTAGGGAAGATCTGGCCTTCCCACAAGGGAAGGCCAGGGAATTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAACAACTCCCGCTCAGAAGCAGGAGCCGATAGACAAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAA -MN692074,pol,2084,4115,2084,5096,forward,0.7912263210369039,FFREDLAFPQGKAREFPSEQTRANSPTRRELQVWGRDNNSRSEAGADRQGTVSFSFPQITLWQRPLVTIRIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLRKKKSVTVLDVGDAYFSVPLDKEFRKYTAFTIPSRNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPEIVIYQYMDDLYVGSDLEIGQHRIKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEIVPLTKEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYAKMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDTQWRALRCCI,FFREDLAFPQGKAREFPSEQTRANSPTRRELQVWGRDNNSRSEAGADRQGTVSFSFPQITLWQRPLVTIRIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLRKKKSVTVLDVGDAYFSVPLDKEFRKYTAFTIPSRNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPEIVIYQYMDDLYVGSDLEIGQHRIKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEIVPLTKEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYAKMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDTQWRALRCCI*,TTTTTTAGGGAAGATCTGGCCTTCCCACAAGGGAAGGCCAGGGAATTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAACAACTCCCGCTCAGAAGCAGGAGCCGATAGACAAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAAGGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAATTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACTCATAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGATTGGTTGCACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCCGCAGGGTTAAGAAAGAAAAAATCAGTAACAGTACTGGATGTGGGGGATGCATATTTTTCAGTTCCCTTAGATAAAGAATTTAGGAAATATACTGCATTTACCATACCCAGTAGAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATTTTAGAGCCTTTTAGAAAACAAAATCCAGAAATAGTTATCTATCAATACATGGATGATTTATATGTAGGATCTGATTTAGAAATAGGGCAGCATAGAATAAAAATAGAGGAACTGAGACAACATCTGTTGAGATGGGGATTTACCACACCAGACAAAAAACATCAGAAAGAACCCCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTGAATTGGGCAAGTCAGATTTACCCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAAATAGTACCACTAACAAAAGAAGCAGAGCTGGAACTGGCAGAAAACAGGGAAATTCTAAAAGAACCAGTACATGGAGTATATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAGCAGGGGCAAGGTCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAAAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTACCCATACAAAAAGAAACATGGGAAGCATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAACAGAGGAAGACAAAAAGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAATTACAAGCAATTCATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATACCCAGTGGCGAGCCCTCAGATGCTGCATATAA -MN692074,vif,3617,4115,5040,5619,forward,1.9968750000000002,MRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDTQWRALRCCI,MRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDTQWRALRCCI*,ATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTACCCATACAAAAAGAAACATGGGAAGCATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAACAGAGGAAGACAAAAAGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAATTACAAGCAATTCATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATACCCAGTGGCGAGCCCTCAGATGCTGCATATAA -MN692074,vpr,3617,4085,5558,5850,forward,1.9602564102564104,MRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDT,MRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDT,ATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTACCCATACAAAAAGAAACATGGGAAGCATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAACAGAGGAAGACAAAAAGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAATTACAAGCAATTCATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATACC -MN692074,nef,3617,4115,8796,9417,forward,1.965040650406504,MRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDTQWRALRCCI,MRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDTQWRALRCCI*,ATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTACCCATACAAAAAGAAACATGGGAAGCATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAACAGAGGAAGACAAAAAGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAATTACAAGCAATTCATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATACCCAGTGGCGAGCCCTCAGATGCTGCATATAA -MN692074,tat_exon1,3823,4084,5830,6045,forward,2.0305555555555554,MVPVRERTHSRSRNLLCRWGS,MVPVRERTHSRSRNLLCRWGS*QGD*IRKSRICY*QRKTKSCLPN*HNKSED*ITSNSSSFAGFGIRSKHSNRLTICIRNHSSTTRY,ATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAACAGAGGAAGACAAAAAGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAATTACAAGCAATTCATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATAC -MN692074,rev_exon1,3823,4084,5969,6045,forward,2.0153846153846153,MVPVRERTHSRSRNLLCRWGS,MVPVRERTHSRSRNLLCRWGS*QGD*IRKSRICY*QRKTKSCLPN*HNKSED*ITSNSSSFAGFGIRSKHSNRLTICIRNHSSTTRY,ATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAACAGAGGAAGACAAAAAGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAATTACAAGCAATTCATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATAC -MN692074,vpu,4080,4164,6061,6310,forward,2.09390243902439,IPSGEPSDAAYKQLLFACTGSLWLDQI,IPSGEPSDAAYKQLLFACTGSLWLDQI*,ATACCCAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTTTGCCTGTACTGGGTCTCTCTGGTTAGACCAGATCTGA -MN692074,tat_exon2,4080,4164,8376,8469,forward,2.1133333333333333,IPSGEPSDAAYKQLLFACTGSLWLDQI,IPSGEPSDAAYKQLLFACTGSLWLDQI*,ATACCCAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTTTGCCTGTACTGGGTCTCTCTGGTTAGACCAGATCTGA -MN692074,rev_exon2,4080,4164,8377,8653,forward,2.065934065934066,IPSGEPSDAAYKQLLFACTGSLWLDQI,IPSGEPSDAAYKQLLFACTGSLWLDQI*,ATACCCAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTTTGCCTGTACTGGGTCTCTCTGGTTAGACCAGATCTGA -MN692145,gag,775,2287,789,2292,forward,0.15900000000000003,MGARASVLSGGKLDQWEKIRLRPGGKKKYQLKHIVWASKELERFAVNPGLLETTEGCRQILGQLQPSLQTGSEELKSLYNTVATLYCVHQRIDVKDTKEALDKIEEEQNKSKEKAKQAAADTGNSNQVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKESFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPGATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRSQRKIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETTTPSQKQESTGKELYPPLASLRSLFGNDPSSQ,MGARASVLSGGKLDQWEKIRLRPGGKKKYQLKHIVWASKELERFAVNPGLLETTEGCRQILGQLQPSLQTGSEELKSLYNTVATLYCVHQRIDVKDTKEALDKIEEEQNKSKEKAKQAAADTGNSNQVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKESFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPGATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRSQRKIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETTTPSQKQESTGKELYPPLASLRSLFGNDPSSQ*R*,ATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAAAATTAGATCAATGGGAGAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATCAATTAAAACATATAGTATGGGCAAGCAAGGAACTAGAACGATTTGCAGTTAATCCTGGCCTGTTAGAAACAACAGAAGGATGTAGACAAATACTGGGACAGCTACAACCATCTCTTCAGACAGGATCAGAAGAACTTAAATCATTATATAATACAGTAGCAACCCTCTATTGTGTGCATCAAAGGATAGATGTAAAAGACACCAAGGAAGCATTAGATAAGATAGAGGAAGAGCAAAACAAGAGTAAGGAAAAAGCAAAACAAGCAGCAGCTGACACAGGAAACAGCAACCAGGTCAGCCAAAATTACCCTATAGTGCAGAACCTTCAGGGCCAAATGGTACACCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAATAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAATACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGAGTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACCACTAGTACCCTTCAGGAACAAATAGGATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGGATGTATAGTCCTACCAGCATTCTGGATATAAGACAAGGACCAAAAGAATCCTTTAGAGATTATGTAGACCGGTTCTACAAAACTCTAAGAGCTGAGCAAGCCTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATTCAAACCCAGATTGTAAGACTATCTTAAAAGCATTGGGACCAGGAGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCCGGCCATAAAGCAAGAGTCTTGGCTGAAGCAATGAGCCAAGTAACAAATTCAGCTACCATAATGATGCAGAGAGGCAATTTTAGGAGCCAAAGGAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAGGGGCATATAGCCAGAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGATTGTACTGAAAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGGAGGCCAGGAAATTTCCTTCAGAGCAGGCCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAACAACTCCCTCTCAGAAGCAGGAGTCGACAGGCAAGGAACTGTATCCTCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAG -MN692145,pol,2070,5085,2084,5096,forward,0.10618145563310066,FFRENLAFPQGEARKFPSEQARANSPTRRELQVWGRDNNSLSEAGVDRQGTVSSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQISIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKESWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARVRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGASNRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLINKEKVYLAWVPAHKGIGGNEQVDKLVSTGIRKVLFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAREIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKVKIIRDYGKQMAGDDCVASRQDED,FFRENLAFPQGEARKFPSEQARANSPTRRELQVWGRDNNSLSEAGVDRQGTVSSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQISIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKESWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARVRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGASNRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLINKEKVYLAWVPAHKGIGGNEQVDKLVSTGIRKVLFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAREIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKVKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGGAGGCCAGGAAATTTCCTTCAGAGCAGGCCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAACAACTCCCTCTCAGAAGCAGGAGTCGACAGGCAAGGAACTGTATCCTCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTACCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATTAAAGTAAGACAGTATGATCAGATATCCATAGAAATCTGTGGACATAAAGCTATAGGGACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAAATTGGTTGTACTTTAAATTTCCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAACAGAAATTTGTACAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGACAGCACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAAAGAACTCAAGATTTCTGGGAAGTTCAATTAGGGATACCACATCCAGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATGAGGATTTCAGGAAGTATACTGCATTTACCATACCTAGTATAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAATGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGACATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAATTGAGACAACATCTGTTGAGGTGGGGATTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAGAAAAAGAAAGCTGGACTGTCAATGACATACAAAAGTTAGTGGGTAAATTGAATTGGGCAAGTCAGATTTATGCAGGGATCAAAGTAAAACAATTATGTAAACTTCTTAGGGGAGCCAAAGCACTAACAGAAGTAATACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAGATTTTAAAAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAGCAGGGGCAAGGCCAATGGACATATCAGATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAGTGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAGCCACTGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAGGTTACCCATACAAAAAGAAACATGGGAAACATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCATCTAATAGAGAGACTAAATTAGGAAAAGCAGGATATGTTACTGACAGAGGAAGACAGAAAGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAGTTACAAGCAATTCATCTAGCTTTGCAGGATTCAGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATAAAAGTGAATCAGAGTTAGTCAATCAAATAATAGAACAGTTAATAAACAAGGAAAAGGTCTACTTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTTAGTACTGGAATTAGAAAAGTACTATTTTTAGATGGAATAGATAAGGCCCAAGAAGAACATGAGAAATACCACAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTGGTAGCAAGAGAAATAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGAGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAGCTAGATTGTACACATTTAGAAGGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAAACAGGACAGGAAACAGCATACTTTCTCTTAAAATTAGCAGGAAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGTAATTTCACTAGTACTACAGTTAAGGCCGCCTGTTGGTGGGCGGGGATCAAGCAGGAGTTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGACCAGGCTGAACATCTTAAAACAGCAGTACAAATGGCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTGATACAAGACAATAGTGACATAAAAGTAGTGCCAAGAAGAAAAGTAAAAATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG -MN692145,vif,5029,5608,5040,5619,forward,0.21875,MENRWQVMIVWQVDRMRIRTWKSLVKHHMYVSGKAKGWFYRHHYESHHPRISSEVHVPLGDARLVITTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPNLADQLIHLYYFDCFSESAIRSAILGHIVSPSCEYQAGHNKVGSLQYLALAALITPKRRKPPLPSVAKLTEDRWNKPQKTKGHRGSHIRNGH,MENRWQVMIVWQVDRMRIRTWKSLVKHHMYVSGKAKGWFYRHHYESHHPRISSEVHVPLGDARLVITTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPNLADQLIHLYYFDCFSESAIRSAILGHIVSPSCEYQAGHNKVGSLQYLALAALITPKRRKPPLPSVAKLTEDRWNKPQKTKGHRGSHIRNGH*,ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAAAAGTTTAGTAAAACACCATATGTATGTTTCAGGGAAAGCTAAGGGATGGTTTTATAGACATCACTATGAAAGCCATCATCCAAGAATAAGTTCAGAAGTACATGTCCCACTAGGGGATGCTAGATTGGTAATAACAACATATTGGGGTCTGCATACAGGAGAAAGAGATTGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGGAAAAGGAGATATAGCACACAAGTAGACCCCAACCTAGCAGACCAACTGATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAGTGCCATATTAGGACATATAGTTAGTCCTAGTTGTGAATATCAAGCAGGACATAACAAGGTAGGATCTCTACAGTACTTGGCATTAGCAGCATTAATAACACCAAAAAGGAGAAAGCCCCCTTTGCCTAGTGTTGCAAAGCTGACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCACCGAGGGAGCCATATCAGGAATGGACACTAG -MN692145,vpr,5547,5841,5558,5850,forward,0.44358974358974423,MEQAPEDQGPPREPYQEWTLELLEELKNEAVRHFPRMWLHGLGQHIYDTYGDTWTGVEAIIRILQQLLFIHFRIGCQHSRIGIIRQRRTRNGANRS,MEQAPEDQGPPREPYQEWTLELLEELKNEAVRHFPRMWLHGLGQHIYDTYGDTWTGVEAIIRILQQLLFIHFRIGCQHSRIGIIRQRRTRNGANRS*T,ATGGAACAAGCCCCAGAAGACCAAGGGCCACCGAGGGAGCCATATCAGGAATGGACACTAGAGCTTTTAGAGGAGCTTAAGAATGAAGCTGTTAGACATTTTCCTAGGATGTGGCTCCATGGCTTAGGGCAACATATCTATGACACTTATGGGGATACTTGGACAGGAGTGGAAGCCATAATAAGAATTCTGCAACAACTGCTGTTCATTCATTTCAGGATTGGGTGTCAACATAGCAGAATAGGCATTATTCGCCAGAGGAGAACAAGAAATGGAGCCAATAGATCCTAGACT -MN692145,tat_exon1,5818,6037,5830,6045,forward,0.29166666666666674,MEPIDPRLEPWKHPGSQPKTACTSCYCKKCCFHCQVCFMTKALGISYGRKKRRQRRRASQDSQTHQVSLSKQ,MEPIDPRLEPWKHPGSQPKTACTSCYCKKCCFHCQVCFMTKALGISYGRKKRRQRRRASQDSQTHQVSLSKQ*,ATGGAGCCAATAGATCCTAGACTAGAGCCCTGGAAGCATCCAGGAAGCCAGCCTAAGACTGCTTGTACCTCTTGCTATTGTAAAAAGTGTTGCTTTCATTGTCAAGTCTGTTTCATGACAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTTCTCAAGACAGTCAGACTCATCAAGTTTCTCTATCAAAGCAGTAA -MN692145,rev_exon1,5957,6038,5969,6045,forward,0.5192307692307692,MAGRSGDSDEELLKTVRLIKFLYQSSK,MAGRSGDSDEELLKTVRLIKFLYQSSK,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTTCTCAAGACAGTCAGACTCATCAAGTTTCTCTATCAAAGCAGTAAG -MN692145,vpu,6049,6298,6061,6310,forward,0.5804878048780489,MNSLQISAIVAIVVAIILAIVVWSIVFIEYRKILRQRKIDRLIDRIRERAEDSGNESEGDQEELSTALMEMGHHAPWDVDDL,MNSLQISAIVAIVVAIILAIVVWSIVFIEYRKILRQRKIDRLIDRIRERAEDSGNESEGDQEELSTALMEMGHHAPWDVDDL*,ATGAACTCTTTACAAATATCAGCAATAGTAGCAATAGTAGTAGCAATAATACTAGCAATAGTTGTGTGGTCTATAGTATTCATAGAATATAGGAAAATATTAAGACAAAGAAAAATAGATAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGGGATCAGGAAGAACTATCAACAGCACTTATGGAGATGGGGCACCATGCTCCTTGGGATGTTGATGATCTGTAG -MN692145,env,6212,8783,6224,8795,forward,0.4975467289719626,MRVKGIRKNYQQHLWRWGTMLLGMLMICSAAGNLWVTVYYGVPVWKEATTTLFCASDAKAYGTEVHNVWATHACVPTDPNPQEVRLENVTENFNMWRNPMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDLGQESTNNNITGSIEKGEMKNCSFNISSSKGSKGHKEYASFYKLDVVPIGNNKTNGNYSSYRLISCNTSVITQACPKVSFEPIPIHFCAPAGYAILKCNDKQFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSANFTDNAKTIIVQLNQSVEITCTRPGNNTIRGVHMGPGKAFYAGAITGDIRKAHCIINKAKWNSTLRLVVAKLSEQFRNKTINFTQPSGGDPEIVTHSFNCGGEFFYCNTTKLFNSTWNATHMINGTWNDTEGNITLPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGGKTNESNTTEIFRPGGGDMRDNWRSELYKYKVVRIEPLGVAPTKAKRRVVQREKRAVGIGALFLGFLGAAGSTMGATSMALTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGVKQLQARVLALERYLKDQQLLGFWGCSGKLICTTDVPWNASWSNKSLGQIWENMTWMEWEREIDNYTSLIYTLITESQIQQEQNEKELLELDKWANLWNWFGITNWLWYIKIFIMIVGGLVGLRIVFAVLSIVNRVRQGYSPLSFQTRFPAPRGPDRPEGIEEEGGERDRDRSAPLVKGFLALIWVDLRSLCLFSYHRLRDLLLIITRIVELLGRRGWEVLKYLWSLLQYWTQELKNSAVSLLNATAIAVAEGTDRIIEVLQRVFRAILHIPTRIRQGFERALL,MRVKGIRKNYQQHLWRWGTMLLGMLMICSAAGNLWVTVYYGVPVWKEATTTLFCASDAKAYGTEVHNVWATHACVPTDPNPQEVRLENVTENFNMWRNPMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDLGQESTNNNITGSIEKGEMKNCSFNISSSKGSKGHKEYASFYKLDVVPIGNNKTNGNYSSYRLISCNTSVITQACPKVSFEPIPIHFCAPAGYAILKCNDKQFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSANFTDNAKTIIVQLNQSVEITCTRPGNNTIRGVHMGPGKAFYAGAITGDIRKAHCIINKAKWNSTLRLVVAKLSEQFRNKTINFTQPSGGDPEIVTHSFNCGGEFFYCNTTKLFNSTWNATHMINGTWNDTEGNITLPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGGKTNESNTTEIFRPGGGDMRDNWRSELYKYKVVRIEPLGVAPTKAKRRVVQREKRAVGIGALFLGFLGAAGSTMGATSMALTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGVKQLQARVLALERYLKDQQLLGFWGCSGKLICTTDVPWNASWSNKSLGQIWENMTWMEWEREIDNYTSLIYTLITESQIQQEQNEKELLELDKWANLWNWFGITNWLWYIKIFIMIVGGLVGLRIVFAVLSIVNRVRQGYSPLSFQTRFPAPRGPDRPEGIEEEGGERDRDRSAPLVKGFLALIWVDLRSLCLFSYHRLRDLLLIITRIVELLGRRGWEVLKYLWSLLQYWTQELKNSAVSLLNATAIAVAEGTDRIIEVLQRVFRAILHIPTRIRQGFERALL*,ATGAGAGTGAAGGGGATCAGGAAGAACTATCAACAGCACTTATGGAGATGGGGCACCATGCTCCTTGGGATGTTGATGATCTGTAGTGCTGCAGGCAATTTGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAAAGAAGCAACCACCACTCTATTTTGTGCATCAGATGCTAAAGCATATGGTACAGAGGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTGAGATTGGAAAATGTGACAGAAAATTTTAATATGTGGAGAAATCCAATGGTAGAACAGATGCATGAGGATATAATTAGTTTATGGGATCAAAGCCTAAAGCCATGTGTAAAGTTGACCCCACTCTGTGTCACTTTAAATTGCACTGATTTGGGACAGGAGAGTACCAATAATAATATCACAGGAAGTATAGAGAAAGGAGAAATGAAAAACTGCTCTTTCAATATCTCCTCAAGCAAAGGAAGTAAGGGGCATAAAGAATATGCATCTTTTTATAAACTTGATGTAGTACCAATAGGTAATAATAAGACTAATGGTAATTATTCTAGCTATAGGTTGATAAGTTGTAATACCTCAGTCATTACACAGGCCTGTCCAAAAGTATCATTTGAGCCAATTCCCATACATTTTTGTGCCCCGGCTGGGTATGCGATTCTAAAGTGTAATGATAAACAATTCAATGGAACAGGACCATGTACAAATGTCAGCACAGTACAGTGTACACATGGAATTAGGCCAGTAGTATCAACTCAACTGCTGTTAAATGGTAGTCTAGCAGAAGAAGAGGTAGTAATTAGATCTGCCAATTTCACGGACAATGCTAAAACCATAATAGTACAGCTGAACCAATCTGTAGAAATTACTTGTACAAGACCCGGTAACAATACAATAAGAGGGGTTCACATGGGACCAGGGAAGGCATTTTATGCAGGAGCAATAACAGGAGATATAAGAAAAGCACATTGTATCATTAATAAAGCAAAATGGAACAGTACTTTAAGACTGGTAGTTGCAAAATTAAGTGAGCAATTTAGGAATAAAACAATAAACTTTACTCAACCCTCAGGAGGGGACCCAGAAATTGTAACACACAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAATACAACAAAACTGTTTAATAGTACTTGGAATGCAACACACATGATTAATGGTACTTGGAATGATACTGAGGGAAATATCACCCTCCCATGCAGAATAAAACAAATTATAAACATGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCATCAGAGGACAAATTAGATGTTCATCCAATATTACAGGGTTGCTATTAACAAGAGATGGTGGTAAGACTAACGAGAGCAACACCACCGAGATCTTTAGACCTGGAGGAGGAGATATGAGAGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAGAATTGAACCATTAGGGGTAGCACCCACCAAGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTCTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAACGTCGATGGCGTTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAACAGCAGAACAATTTGCTGAGAGCTATTGAGGCGCAACAACATTTGTTGCAACTCACAGTCTGGGGCGTCAAGCAGCTCCAGGCAAGAGTCCTGGCTCTGGAAAGATACCTAAAGGATCAACAGCTCCTGGGGTTTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGATGTGCCTTGGAATGCTAGTTGGAGTAATAAATCTCTGGGACAAATTTGGGAGAACATGACCTGGATGGAGTGGGAAAGAGAAATTGATAATTACACAAGCTTAATATACACTTTAATTACAGAATCGCAGATCCAACAAGAACAGAATGAAAAAGAATTGTTGGAATTGGATAAATGGGCAAATTTGTGGAATTGGTTTGGCATAACAAACTGGCTGTGGTACATAAAAATATTTATAATGATAGTAGGAGGCTTAGTAGGTTTAAGAATAGTTTTTGCTGTACTTTCTATAGTGAATAGAGTTAGGCAGGGATACTCACCATTATCGTTTCAGACCCGCTTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGCTCCATTAGTGAAAGGATTCTTAGCACTTATCTGGGTCGATCTACGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATAATAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGTCCTCAAATACTTGTGGAGTCTCCTACAGTATTGGACACAGGAACTAAAGAATAGTGCTGTTAGCTTGCTCAATGCCACAGCCATAGCAGTAGCTGAGGGGACAGATAGGATTATAGAAGTATTACAAAGAGTTTTTAGAGCTATCCTCCATATCCCTACAAGAATAAGACAGGGCTTTGAAAGGGCTTTGCTATAA -MN692145,tat_exon2,8364,8460,8376,8469,forward,0.4866666666666659,RPASQPRGDPTGPKESKKKVERETETDPLH,RPASQPRGDPTGPKESKKKVERETETDPLH**,AGACCCGCTTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGCTCCATTAGTGA -MN692145,rev_exon2,8365,8641,8377,8653,forward,0.2637362637362637,DPLPSPEGTRQARRNRRRRWRERQRQIRSISERILSTYLGRSTEPVPLQLPPLERLTLDNNEDCGTSGTQGVGSPQILVESPTVLDTGTKE,DPLPSPEGTRQARRNRRRRWRERQRQIRSISERILSTYLGRSTEPVPLQLPPLERLTLDNNEDCGTSGTQGVGSPQILVESPTVLDTGTKE*,GACCCGCTTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGCTCCATTAGTGAAAGGATTCTTAGCACTTATCTGGGTCGATCTACGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATAATAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGTCCTCAAATACTTGTGGAGTCTCCTACAGTATTGGACACAGGAACTAAAGAATAG -MN692145,nef,8784,9576,8796,9417,forward,0.3878048780487735,MGGKWSKSSLVGWPNVRERMRRAEPAADGVGAVSRDLERHGAITSSNTATNNADCAWLEAQKEEEVGFPVTPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIHSQKRQDILDLWIYHTQGYFPDWQNYTPGPGVRYPLTFGWCFKLVPVEPTDRENDRLLHPASLQGMEDPEGEVLEWRFDSRLAFHHMARELHPEYYKNC,MGGKWSKSSLVGWPNVRERMRRAEPAADGVGAVSRDLERHGAITSSNTATNNADCAWLEAQKEEEVGFPVTPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIHSQKRQDILDLWIYHTQGYFPDWQNYTPGPGVRYPLTFGWCFKLVPVEPTDRENDRLLHPASLQGMEDPEGEVLEWRFDSRLAFHHMARELHPEYYKNC*HRAFYKGLSAGDFPGEAWPGRGRGVASPQMLHISSCFCLYWVSLVRPDLSLGALWLTREPTA*,ATGGGGGGCAAGTGGTCAAAAAGTAGTTTGGTTGGATGGCCTAATGTAAGGGAAAGAATGAGACGAGCTGAGCCAGCAGCAGATGGGGTGGGAGCAGTATCTCGAGACTTGGAAAGACATGGAGCAATCACAAGTAGTAATACAGCAACTAACAATGCTGATTGTGCCTGGCTAGAAGCACAAAAGGAGGAGGAGGTGGGTTTTCCAGTCACACCTCAGGTACCTTTAAGACCAATGACTTACAAGGCAGCTGTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCACTCCCAAAAAAGACAAGATATTCTTGATCTATGGATCTACCACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGGTCAGATATCCACTGACCTTTGGATGGTGCTTCAAGCTAGTACCAGTTGAGCCCACTGACAGAGAGAATGACAGATTGCTGCACCCTGCAAGCCTGCAGGGGATGGAAGACCCGGAGGGAGAAGTGTTAGAGTGGAGGTTTGACAGCCGCCTGGCATTTCATCACATGGCCCGAGAGCTGCATCCGGAGTACTACAAGAACTGCTGACATCGAGCTTTCTACAAGGGACTTTCCGCTGGGGACTTTCCAGGGGAGGCGTGGCCTGGGCGGGGCAGGGGAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTCTGCCTGTACTGGGTCTCTCTGGTTAGACCAGATCTGAGCCTGGGAGCTCTCTGGCTGACTAGGGAACCCACTGCTTAA -MN090335,gag,315,1665,789,2292,forward,0.8911999999999998,MAYSPVAAPRLLPCALQQATPQDLNTMLNTVGGHQAAMQMLKEVINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQATGTANILMQRGNFRNQRKPVKCFNCGKEGHIAKNCRAPRKKGCWKCGREGHQMKDCTERQANFLGKIWPSHKGRPGNFPQSRPEIPQSRPEPTAPPAPPEESFRFGEATTPSQKQETMDKELYPPLTSLRSLFGNDPSSQ,MYTIEGGYCII**SKFF*SCLKGWL*LFQYLFTAS*CF*QARINCESF*FPACPYYMF*SIFFLSPWP*PNFLPSI*FSPAQY*RSRTHLSPSSLR*SKMAYSPVAAPRLLPCALQQATPQDLNTMLNTVGGHQAAMQMLKEVINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQATGTANILMQRGNFRNQRKPVKCFNCGKEGHIAKNCRAPRKKGCWKCGREGHQMKDCTERQANFLGKIWPSHKGRPGNFPQSRPEIPQSRPEPTAPPAPPEESFRFGEATTPSQKQETMDKELYPPLTSLRSLFGNDPSSQ*,ATGTACACAATAGAGGGTGGCTACTGTATTATATAATGATCTAAGTTCTTCTGATCCTGTCTGAAGGGATGGTTGTAGCTGTTCCAATATCTGTTTACAGCCTCCTGATGTTTCTAACAGGCCAGGATTAACTGCGAATCGTTCTAGTTCCCTGCTTGCCCATACTATATGTTTTAATCTATATTTTTTCTTTCCCCCTGGCCTTAACCGAATTTTCTCCCATCTATCTAATTCTCCCCCGCTCAATACTGACGCTCTCGCACCCATCTCTCTCCTTCTAGCCTCCGCTAGTCAAAAATGGCGTACTCACCAGTCGCCGCCCCTCGCCTCTTGCCGTGCGCGCTTCAGCAAGCCACCCCACAAGATTTGAACACTATGCTAAACACAGTGGGTGGACACCAAGCAGCTATGCAAATGTTAAAAGAGGTCATCAATGAGGAAGCTGCAGAATGGGATAGATTACATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGGATGGATGACACATAATCCACCTATCCCAGTAGGAGAGATTTATAAAAGATGGATAATTCTGGGACTAAATAAAATAGTAAGAATGTATAGCCCTACCAGCATTTTGGACATAAAGCAAGGGCCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAAAACTTTAAGAGCCGAGCAAGCTACACAGGAAGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAGAATGCAAATCCAGATTGTAAAACTATTTTAAAAGCATTAGGACCAGCAGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGGGGACCCGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGCAACAGGTACAGCCAACATACTGATGCAGAGAGGCAATTTTAGGAACCAAAGAAAGCCTGTTAAATGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAGGGAAGGACACCAAATGAAGGATTGCACTGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCTCACAAGGGAAGGCCAGGGAACTTTCCTCAGAGCCGACCAGAAATTCCTCAGAGCAGACCAGAGCCAACAGCCCCACCAGCCCCTCCAGAAGAGAGCTTCAGGTTTGGGGAAGCAACAACTCCCTCTCAGAAGCAGGAGACAATGGACAAGGAGCTGTATCCTCCTCTAACTTCCCTCAGATCACTCTTTGGCAACGACCCATCGTCACAATAA -MN090335,pol,1427,4469,2084,5096,forward,0.2169491525423728,FFRENLAFSQGKARELSSEPTRNSSEQTRANSPTSPSRRELQVWGSNNSLSEAGDNGQGAVSSSNFPQITLWQRPIVTIKIGGQLKEALLDTGADDTVLEDIDLPGKWKPKMIGGIGGFIKVRQYEQVPIEISGHKAIGTVLVGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDGTKWRKLVDFRELNKRTQEFWEIQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKTNPDIVIYQYMDDLYVGSDLEIGQHRTKVEELRQHLMRWGFTTPDKKHQKEPPFLWMGYELHPNKWTVQPIVLPEKESWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGTKALTEVVPLTEEAELELAENREILKDPVHGAYYDPAKDLIAELQKQGEGQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKISTESIVIWGRTPKFRLPIQKETWETWWTDYWQATWIPEWEFVNTPPLVKLWYQLEKEPIIGAETFYVDGAANRDNKSGKAGYVTDRGRQKVVTINDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIEKAQEDHEKYHSNWRTMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEEKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGRNFTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATEIQTKELQKQITKIPNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED,FFRENLAFSQGKARELSSEPTRNSSEQTRANSPTSPSRRELQVWGSNNSLSEAGDNGQGAVSSSNFPQITLWQRPIVTIKIGGQLKEALLDTGADDTVLEDIDLPGKWKPKMIGGIGGFIKVRQYEQVPIEISGHKAIGTVLVGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDGTKWRKLVDFRELNKRTQEFWEIQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKTNPDIVIYQYMDDLYVGSDLEIGQHRTKVEELRQHLMRWGFTTPDKKHQKEPPFLWMGYELHPNKWTVQPIVLPEKESWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGTKALTEVVPLTEEAELELAENREILKDPVHGAYYDPAKDLIAELQKQGEGQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKISTESIVIWGRTPKFRLPIQKETWETWWTDYWQATWIPEWEFVNTPPLVKLWYQLEKEPIIGAETFYVDGAANRDNKSGKAGYVTDRGRQKVVTINDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIEKAQEDHEKYHSNWRTMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEEKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGRNFTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATEIQTKELQKQITKIPNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAAATCTGGCCTTCTCACAAGGGAAGGCCAGGGAACTTTCCTCAGAGCCGACCAGAAATTCCTCAGAGCAGACCAGAGCCAACAGCCCCACCAGCCCCTCCAGAAGAGAGCTTCAGGTTTGGGGAAGCAACAACTCCCTCTCAGAAGCAGGAGACAATGGACAAGGAGCTGTATCCTCCTCTAACTTCCCTCAGATCACTCTTTGGCAACGACCCATCGTCACAATAAAGATAGGGGGGCAACTAAAGGAAGCTTTATTAGATACAGGAGCAGATGATACAGTATTAGAGGACATAGATTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAATATGAACAGGTACCCATAGAAATTAGCGGACACAAAGCTATAGGTACAGTGTTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGCTTGGTTGCACTCTAAATTTTCCCATCAGCCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGACGGCCCAAAGGTTAAACAATGGCCATTAACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTGTTTGCCATAAAGAAAAAAGATGGCACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGAATTCTGGGAAATTCAATTAGGTATACCACATCCTGCAGGGCTAAAAAAGAAAAAATCAGTCACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATAAAGACTTCAGGAAATATACTGCATTTACCATACCTAGTATAAACAATGAGACACCAGGGATTAGATATCAGTATAATGTGCTTCCACAAGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAGATCCTGGAGCCTTTTAGAAAGACAAATCCAGACATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAACATAGAACAAAAGTAGAGGAACTGAGGCAACATCTGATGAGGTGGGGATTTACCACACCAGACAAAAAGCACCAGAAAGAACCCCCATTCCTTTGGATGGGGTATGAACTCCATCCTAATAAATGGACAGTACAGCCTATAGTACTGCCAGAAAAGGAAAGTTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTATGCAGGGATTAAAGTGAAGCAATTATGTAAGCTCCTTAGGGGAACCAAAGCATTAACAGAAGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAGATTCTAAAAGATCCGGTACATGGAGCATATTATGACCCAGCAAAGGACTTAATAGCAGAACTACAGAAGCAGGGAGAAGGTCAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGGAAATATGCAAGAACGAGGGGTGCCCATACTAATGATGTAAAGCAATTAACAGAGGCAGTGCAAAAAATATCCACAGAAAGTATAGTAATATGGGGAAGGACTCCTAAATTTAGATTACCCATACAAAAAGAAACATGGGAAACATGGTGGACAGATTATTGGCAAGCCACCTGGATCCCTGAGTGGGAGTTTGTCAACACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAAAAAGAACCCATAATAGGAGCAGAAACCTTCTATGTAGATGGGGCAGCTAATAGGGATAATAAATCAGGAAAAGCAGGATATGTTACTGATAGAGGAAGACAAAAGGTTGTCACCATAAATGACACAACAAATCAGAAAACTGAATTACAAGCCATTCATCTAGCCTTGCAGGATTCGGGGCTAGAAGTAAACATAGTAACAGACTCACAGTATGCATTAGGGATCATTCAAGCACAACCAGATAAAAGTGAATCAGAGTTAGTCAGTCAAATAATAGAACAGTTAATAAAAAAGGAAAAGGTCTACCTGGCATGGGTGCCAGCCCACAAAGGAATTGGAGGAAATGAACAGGTAGATAAACTAGTCAGTGCTGGAATCAGGAAAGTACTATTTTTAGATGGAATAGAAAAAGCCCAAGAAGACCATGAGAAATATCACAGTAATTGGAGAACAATGGCTAGTGATTTTAACCTACCACCTATAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGAGAAGCTATGCATGGGCAAGTAGACTGTAGTCCAGGTATATGGCAGCTAGATTGTACACATTTAGAAGAAAAAATTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTGATTCCAGCAGAGACAGGGCAAGAAACAGCATACTTTATTTTAAAACTAGCAGGAAGATGGCCAGTAAAAACAATACATACAGACAATGGCCGCAATTTCACCAGTAATACAGTGAAGGCCGCCTGTTGGTGGGCGGGAATCAAGCAGGAATTTGGTATTCCCTACAATCCCCAGAGTCAAGGAGTAGTAGAATCTATGAATAATGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGATACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACAGAAATACAGACTAAAGAATTACAAAAACAAATTACAAAAATTCCAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAACAGTGACATAAAAGTAGTGCCAAGAAGAAAAGCAAAAATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG -MN090335,vif,4413,5001,5040,5619,forward,0.34375,MENRWQVMIVWQVDRMRIRTWKSLVKYHMYISKKAKKWAYRHHYETTHPRISSEVHIPLGDDRLVITTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPDLADHLIHVHYFDCFSESAIRNAILGHRVSPRCEYQAGHNKVGSLQYLALTAVITPKKIKPPLPSVKKLTEDRWNKPQKTKGHRESHTMNGH,MENRWQVMIVWQVDRMRIRTWKSLVKYHMYISKKAKKWAYRHHYETTHPRISSEVHIPLGDDRLVITTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPDLADHLIHVHYFDCFSESAIRNAILGHRVSPRCEYQAGHNKVGSLQYLALTAVITPKKIKPPLPSVKKLTEDRWNKPQKTKGHRESHTMNGH*SF*,ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAAAAGTTTAGTAAAATACCATATGTATATTTCAAAGAAAGCCAAAAAATGGGCTTATAGACACCATTACGAAACCACTCATCCAAGAATAAGTTCAGAAGTACATATCCCACTAGGGGATGATAGATTGGTAATAACAACATATTGGGGTCTGCATACAGGAGAGAGAGACTGGCATTTGGGCCAGGGAGTCTCCATAGAATGGAGAAAAAGGAGATATAGCACACAAGTAGACCCTGACTTAGCAGACCATCTAATTCATGTGCATTATTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACATAGAGTTAGCCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGATCTCTACAATACTTGGCACTAACAGCAGTAATAACACCAAAGAAGATAAAGCCACCTTTGCCTAGTGTAAAGAAACTGACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGAGAGCCATACAATGAATGGACACTAGAGCTTTTAG -MN090335,vpr,4931,5225,5558,5850,forward,0.5192307692307698,MEQAPEDQGPQREPYNEWTLELLEELKREAVRHFPRPWLQDLGQYIYETYGDTWTGVEAIIRILQQMLFIHFRIGCHHSRIGIVLQRRARNGASRS,MEQAPEDQGPQREPYNEWTLELLEELKREAVRHFPRPWLQDLGQYIYETYGDTWTGVEAIIRILQQMLFIHFRIGCHHSRIGIVLQRRARNGASRS*T,ATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGAGAGCCATACAATGAATGGACACTAGAGCTTTTAGAAGAGCTTAAGAGAGAAGCTGTTAGACATTTCCCTAGACCATGGCTACAAGACCTAGGACAATATATCTATGAAACTTATGGGGATACTTGGACAGGAGTGGAAGCCATAATAAGAATTCTGCAACAAATGCTGTTTATTCATTTCAGAATTGGGTGTCACCATAGCAGAATAGGCATTGTTCTGCAAAGAAGAGCAAGAAATGGAGCCAGTAGATCATAGACT -MN090335,tat_exon1,5202,5418,5830,6045,forward,0.45833333333333326,MEPVDHRLEPWKHPGSQPRTPCTNCYCKKCCFHCQVCFIQKALGISYGRKKRRQRRRSPQDSQTHQVPLPKQ,MEPVDHRLEPWKHPGSQPRTPCTNCYCKKCCFHCQVCFIQKALGISYGRKKRRQRRRSPQDSQTHQVPLPKQ,ATGGAGCCAGTAGATCATAGACTAGAGCCCTGGAAGCATCCAGGAAGTCAGCCTAGGACTCCTTGTACCAATTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTGTGTTTTATACAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGAGACGAAGATCTCCTCAAGACAGTCAGACTCATCAAGTTCCTCTACCAAAGCAG -MN090335,rev_exon1,5341,5419,5969,6045,forward,0.6923076923076923,MAGRSGDRDEDLLKTVRLIKFLYQSS,MAGRSGDRDEDLLKTVRLIKFLYQSS,ATGGCAGGAAGAAGCGGAGACAGAGACGAAGATCTCCTCAAGACAGTCAGACTCATCAAGTTCCTCTACCAAAGCAGT -MN090335,vpu,5433,5682,6061,6310,forward,0.6560975609756099,MQSLEILAIVALVVAAIIAIVVWTIVGIEYRKILRQRKIDKIINRIRERAEDSGNESEGDQEELSALVVEMGHDAPWDVDDL,MQSLEILAIVALVVAAIIAIVVWTIVGIEYRKILRQRKIDKIINRIRERAEDSGNESEGDQEELSALVVEMGHDAPWDVDDL*,ATGCAATCTTTAGAGATATTAGCAATAGTAGCATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGACCATAGTAGGCATAGAATATAGGAAAATATTAAGACAAAGAAAAATAGATAAAATAATTAATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGCGAAGGGGATCAGGAAGAATTGTCAGCACTTGTGGTGGAAATGGGGCACGATGCTCCTTGGGATGTTGATGATCTGTAG -MN090335,env,5596,8158,6224,8795,forward,0.6022196261682247,MRAKGIRKNCQHLWWKWGTMLLGMLMICSAAENLWVTVYYGVPVWRDANTTLFCASDAKAYDTEVHNVWATHACVPTDPNPHEVELKNVTENFNMWKNNMVDQMHEDIINLWDQSLKPCAKLTPLCVTLNCTDLRNDTVGNQTNLTETNTIQGREMTNCSFNITTEIRDKVRKEHALFYKLDVMPIDRDNTSYTLINCNTSVITQACPKVTFEPIPIHYCTPAGFAILKCKDEMFNGTGPCKNVSTVQCTHGIRPVVSTQLLLNGSLAEKEIVLRSENFTDNGKNIIVQLNRSIVINCTRPNNNTRKSISVAGRAIYATGQIIGDIRQAHCNISETDWNDTLSKIVEKLREKFGKDKTIIFNQSSGGDMEIETHSFNCGGEFFYCNTTRLFNSTWSVNGTSINGTKNITLPCRIKQIINRWQEVGKAMYAPPISGIIRCSSNITGLILTRDGGTNNSTEETETFRPGGGNMKDNWRSELYKYKVVKIEPLGVAPTKAQRRVVQREKRAIGALGAMFLGFLGAAGSTMGAASLTLTVQARQLLSGIVQQQNNLLRAIEAQQHMLQLTVWGIKQLQARVLSVERYLQDQQLLGIWGCSGKLICTTTVPWNTSWSNKSYDTIWDNMTWMQWDREIQNYTGKIYNLLEESQIQQEKNEKELLELDQWANLWNWFSITKWLWYIKIFIMIVGGLVGLKIIFAVFSIVNRVRQGYSPLSLQTLLPTPRGPDRPEGIEEEGGERDRGRSGRLVTGFLPLIWDDLRSLCLFSYHHLRDLLLIVLRTVQVLGHRGWEILKYWWSLLQYWIQELKNSAVSLLNTIAIAVAEGTDRVIEVGQRIGRAFLHIPRRIRQGLERALQ,MRAKGIRKNCQHLWWKWGTMLLGMLMICSAAENLWVTVYYGVPVWRDANTTLFCASDAKAYDTEVHNVWATHACVPTDPNPHEVELKNVTENFNMWKNNMVDQMHEDIINLWDQSLKPCAKLTPLCVTLNCTDLRNDTVGNQTNLTETNTIQGREMTNCSFNITTEIRDKVRKEHALFYKLDVMPIDRDNTSYTLINCNTSVITQACPKVTFEPIPIHYCTPAGFAILKCKDEMFNGTGPCKNVSTVQCTHGIRPVVSTQLLLNGSLAEKEIVLRSENFTDNGKNIIVQLNRSIVINCTRPNNNTRKSISVAGRAIYATGQIIGDIRQAHCNISETDWNDTLSKIVEKLREKFGKDKTIIFNQSSGGDMEIETHSFNCGGEFFYCNTTRLFNSTWSVNGTSINGTKNITLPCRIKQIINRWQEVGKAMYAPPISGIIRCSSNITGLILTRDGGTNNSTEETETFRPGGGNMKDNWRSELYKYKVVKIEPLGVAPTKAQRRVVQREKRAIGALGAMFLGFLGAAGSTMGAASLTLTVQARQLLSGIVQQQNNLLRAIEAQQHMLQLTVWGIKQLQARVLSVERYLQDQQLLGIWGCSGKLICTTTVPWNTSWSNKSYDTIWDNMTWMQWDREIQNYTGKIYNLLEESQIQQEKNEKELLELDQWANLWNWFSITKWLWYIKIFIMIVGGLVGLKIIFAVFSIVNRVRQGYSPLSLQTLLPTPRGPDRPEGIEEEGGERDRGRSGRLVTGFLPLIWDDLRSLCLFSYHHLRDLLLIVLRTVQVLGHRGWEILKYWWSLLQYWIQELKNSAVSLLNTIAIAVAEGTDRVIEVGQRIGRAFLHIPRRIRQGLERALQ*,ATGAGAGCGAAGGGGATCAGGAAGAATTGTCAGCACTTGTGGTGGAAATGGGGCACGATGCTCCTTGGGATGTTGATGATCTGTAGTGCTGCGGAAAATTTGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAGAGATGCAAATACCACTCTATTCTGTGCATCAGATGCTAAAGCATATGATACAGAAGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCTAACCCACATGAAGTAGAATTGAAAAATGTGACAGAAAATTTTAATATGTGGAAAAATAACATGGTGGACCAGATGCATGAGGATATAATCAATTTATGGGATCAAAGCCTAAAGCCATGTGCAAAATTGACCCCACTCTGTGTTACTTTAAATTGCACTGATTTAAGAAATGATACTGTAGGAAATCAAACAAATCTCACTGAAACTAATACAATACAGGGAAGAGAAATGACAAACTGCTCTTTCAATATCACCACAGAGATAAGAGATAAAGTGCGAAAAGAACATGCACTTTTTTATAAACTTGATGTCATGCCAATAGATAGGGATAATACAAGTTATACATTGATAAATTGCAATACCTCAGTCATTACACAGGCCTGTCCAAAGGTAACCTTTGAACCAATTCCCATACATTATTGTACTCCAGCTGGTTTTGCAATTCTAAAGTGTAAGGATGAGATGTTCAATGGAACAGGACCATGTAAGAATGTCAGCACAGTACAATGTACACATGGAATTAGACCAGTAGTGTCAACTCAACTACTGTTAAATGGTAGCCTAGCAGAAAAAGAGATAGTACTTAGATCTGAAAATTTCACAGACAATGGTAAAAATATAATAGTACAGCTAAATAGATCTATAGTAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAGTGTAGCAGGGAGAGCAATTTATGCAACAGGGCAGATAATAGGAGATATAAGACAAGCACATTGTAACATCAGTGAGACAGATTGGAATGACACTTTAAGCAAAATAGTTGAAAAATTAAGGGAAAAATTTGGAAAAGATAAAACAATAATCTTTAATCAATCATCAGGAGGGGACATGGAAATTGAAACGCACAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAACACAACACGACTGTTTAATAGTACTTGGAGTGTTAATGGAACTAGCATAAACGGAACTAAAAATATCACACTCCCGTGCAGAATAAAACAAATTATAAACAGGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCTATCAGTGGGATAATTAGGTGCTCATCAAATATTACAGGACTAATATTAACAAGAGATGGTGGTACAAATAATAGTACAGAGGAGACGGAGACCTTCAGACCTGGAGGGGGAAATATGAAGGACAATTGGAGAAGTGAATTATATAAATACAAAGTAGTAAAAATTGAGCCATTAGGAGTAGCACCCACCAAGGCACAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAATAGGAGCGTTAGGAGCTATGTTCCTCGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCACTGACGCTGACGGTACAAGCCAGACAATTATTGTCTGGTATAGTGCAACAGCAGAACAATCTGCTGAGGGCTATTGAGGCGCAACAGCATATGTTGCAACTCACAGTCTGGGGCATCAAACAGCTCCAGGCAAGAGTCCTGTCTGTGGAAAGATACCTACAGGATCAACAGCTCCTGGGGATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTACTGTGCCTTGGAATACTAGTTGGAGCAATAAATCTTACGATACCATCTGGGATAACATGACCTGGATGCAGTGGGACAGAGAAATTCAAAATTACACAGGGAAAATATACAACTTACTTGAGGAATCGCAAATCCAACAGGAAAAGAATGAAAAGGAATTATTAGAACTAGATCAATGGGCAAATTTGTGGAATTGGTTTAGTATAACAAAATGGCTGTGGTATATAAAAATATTCATAATGATAGTAGGAGGCTTAGTAGGTTTAAAAATAATTTTTGCTGTATTTTCTATAGTGAATAGAGTTAGGCAGGGATACTCACCATTATCATTGCAGACCCTCCTCCCAACCCCGAGGGGACCAGACAGGCCCGAAGGAATAGAAGAAGAAGGTGGAGAGAGAGACAGAGGCAGATCCGGAAGATTAGTGACTGGATTCTTACCACTCATCTGGGACGACCTGCGGAGCCTGTGCCTCTTCAGCTACCACCACTTGAGAGACTTACTCTTGATTGTGCTGAGGACTGTGCAAGTTCTGGGACACAGGGGGTGGGAGATCCTCAAGTACTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAACTAAAGAATAGTGCTGTTAGCTTGCTCAATACCATAGCTATCGCAGTAGCTGAGGGAACAGATAGGGTTATAGAGGTAGGACAAAGAATTGGCAGAGCTTTTCTCCACATACCTAGAAGGATAAGACAGGGATTAGAAAGGGCTTTGCAATAA -MN090335,tat_exon2,7739,7835,8376,8469,forward,0.3999999999999999,RPSSQPRGDQTGPKE,RPSSQPRGDQTGPKE*KKKVERETEADPED**,AGACCCTCCTCCCAACCCCGAGGGGACCAGACAGGCCCGAAGGAATAGAAGAAGAAGGTGGAGAGAGAGACAGAGGCAGATCCGGAAGATTAGTGA -MN090335,rev_exon2,7740,8016,8377,8653,forward,0.46153846153846145,DPPPNPEGTRQARRNRRRRWRERQRQIRKISDWILTTHLGRPAEPVPLQLPPLERLTLDCAEDCASSGTQGVGDPQVLVESPAVLDSGTKE,DPPPNPEGTRQARRNRRRRWRERQRQIRKISDWILTTHLGRPAEPVPLQLPPLERLTLDCAEDCASSGTQGVGDPQVLVESPAVLDSGTKE*,GACCCTCCTCCCAACCCCGAGGGGACCAGACAGGCCCGAAGGAATAGAAGAAGAAGGTGGAGAGAGAGACAGAGGCAGATCCGGAAGATTAGTGACTGGATTCTTACCACTCATCTGGGACGACCTGCGGAGCCTGTGCCTCTTCAGCTACCACCACTTGAGAGACTTACTCTTGATTGTGCTGAGGACTGTGCAAGTTCTGGGACACAGGGGGTGGGAGATCCTCAAGTACTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAACTAAAGAATAG -MN090335,nef,8159,8819,8796,9417,forward,0.5260162601625942,MGGKWSKGCMAGWPTVRERMERIDPRPAARREQAEPAAAGVGAASRDLEKYGAITSSNTSTTNAACAWLEAQEEEEVGFPVRPQVPLRPMTYKAALDLSHFLKEKGGLEGLIWSQRRQEILDLWVYHTQGYFPDWQNYTPGPGVRFPLTFGWCFKLVPVDPDQVEKANEGENNCLLHPMSLHGMEDSEGEVLMWKFDSSLAFHHRAREQHPEYYKDC,MGGKWSKGCMAGWPTVRERMERIDPRPAARREQAEPAAAGVGAASRDLEKYGAITSSNTSTTNAACAWLEAQEEEEVGFPVRPQVPLRPMTYKAALDLSHFLKEKGGLEGLIWSQRRQEILDLWVYHTQGYFPDWQNYTPGPGVRFPLTFGWCFKLVPVDPDQVEKANEGENNCLLHPMSLHGMEDSEGEVLMWKFDSSLAFHHRAREQHPEYYKDC*H*,ATGGGTGGCAAGTGGTCAAAAGGTTGTATGGCTGGATGGCCTACTGTAAGGGAAAGAATGGAAAGAATTGATCCAAGGCCTGCTGCAAGGAGGGAACAAGCTGAGCCAGCAGCAGCTGGGGTAGGAGCAGCATCTCGAGACTTGGAAAAATATGGAGCAATCACAAGTAGCAATACATCAACTACTAATGCTGCTTGTGCCTGGCTAGAAGCACAAGAGGAGGAGGAAGTAGGCTTTCCAGTCAGACCTCAGGTACCTTTAAGACCAATGACTTACAAAGCAGCTTTGGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTGGTCCCAGAGAAGACAAGAAATCCTTGATTTGTGGGTTTACCACACACAAGGATACTTCCCTGATTGGCAAAACTACACACCAGGACCAGGGGTCAGATTTCCACTGACCTTTGGATGGTGCTTCAAGCTAGTACCAGTTGATCCAGACCAAGTAGAGAAGGCCAATGAAGGAGAGAACAACTGCTTGCTACACCCTATGAGCCTGCATGGGATGGAAGACTCAGAGGGAGAAGTGTTAATGTGGAAGTTTGACAGCAGCCTGGCGTTTCATCATAGAGCCCGAGAACAACATCCGGAGTACTACAAAGACTGCTGACACTGA -MN090376,gag,376,1639,789,2292,forward,2.1734000000000018,MQTQIVRPF,MFCTIG*FWLTWLLFPGSAAACCVFFLLLFCSSSILSKASLVSFISIL*CTQ*RTATVLNNDLSSSDPV*SAGCSCPSICLQPSDVSNRPGLTANRSSSLLAHTICFNLYLFFPPGLNRIFSHLSNSPPLNTDALAPISLLLASASQKGVLTVRRPSPLAVRASASRVR*FWD*IK**ECIVLPAFWT*DKDQRNPLETM*IGSIKL*EPSKLHRR*KIG*QKPCWSRMQTQIVRPF*KHWVQQLH*KK**QHAREWEDPAIRQEFWRKQ*AK*QTQLP**CRKAILGAKERWLSVSIVAKKGT*PEIAGPLGKGAVGNVERKDTK*KIVLRDRQIF*GKSGLPTRGGQGTFLKAEQNQQPHQRRASVLGRRQQLLLRSRSR*TRNYTLCLPSNHSLATTLSHSKDRGATKGSSIRYRSR*,ATGTTCTGCACTATAGGGTAATTTTGGCTGACCTGGTTGCTATTTCCTGGGTCAGCTGCTGCTTGCTGTGTCTTTTTCTTACTTTTGTTTTGTTCTTCCTCTATCTTGTCTAAAGCTTCCTTGGTGTCTTTTATCTCTATCCTTTGATGCACACAATAGAGGACTGCTACTGTATTAAATAATGATTTAAGTTCCTCTGATCCTGTCTGAAGTGCTGGTTGTAGCTGTCCCAGTATTTGTCTACAGCCTTCTGATGTTTCTAACAGGCCAGGATTAACTGCGAATCGTTCCAGTTCCCTGCTTGCCCATACTATATGTTTTAACTTATATCTTTTCTTTCCCCCTGGCCTTAACCGAATTTTCTCCCATTTGTCTAATTCTCCCCCGCTTAATACCGACGCTCTCGCACCCATCTCTCTCCTTCTAGCCTCCGCTAGTCAAAAAGGCGTACTCACCGTTCGCCGCCCCTCGCCTCTTGCTGTGCGCGCTTCAGCAAGCCGAGTCCGATAATTCTGGGATTAAATAAAATAGTAAGAATGTATAGTCCTACCAGCATTCTGGACATAAGACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGATCGGTTCTATAAAACTCTAAGAGCCGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAGAATGCAAACCCAGATTGTAAGACCATTTTAAAAGCATTGGGTCCAGCAGCTACACTAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCCGGCCATAAGGCAAGAGTTTTGGCGGAAGCAATGAGCCAAGTAACAAACTCAGCTTCCGTGATGATGCAGAAAGGCAATTTTAGGAGCCAAAGAAAGATGGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGGAAAAGGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGATTGTACTGAGAGACAGGCAAATTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGGAGGCCAGGGAACTTTCCTCAAAGCAGAACAGAACCAACAGCCCCACCAGAGGAGAGCTTCAGTTTTGGGGAGAAGACAACAACTCCTTCTCAGAAGCAGGAGCCGATAGACCAGGAACTATACCCTCTGTCTTCCCTCAAATCACTCTTTGGCAACGACCCTTAGTCACAGTAAGGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGA -MN090376,pol,1382,4394,2084,5096,forward,0.18823529411764706,FFRENLAFPQGEARELSSKQNRTNSPTRGELQFWGEDNNSFSEAGADRPGTIPSVFPQITLWQRPLVTVRIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVKQYDQISVEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPRVKQWPLTEEKIKALTEICKEMEKEGKISKIGPENPYNTPIFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKVEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGAKALTEVVPLTEEAELELAENREILKEPVHGVYYDPTKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWESWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIIGAETFYVDGAANRETKSGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIQKEKVYLAWVPAHKGIGGNEQVDKLVSSGIRKVLFLDGIDKAQDEHEKYHSNWRAMASDFNIPPVVAKEIVACCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPNFTSNAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKQLKQIIGQVREQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDGCVASRQDED,FFRENLAFPQGEARELSSKQNRTNSPTRGELQFWGEDNNSFSEAGADRPGTIPSVFPQITLWQRPLVTVRIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVKQYDQISVEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPRVKQWPLTEEKIKALTEICKEMEKEGKISKIGPENPYNTPIFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKVEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGAKALTEVVPLTEEAELELAENREILKEPVHGVYYDPTKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWESWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIIGAETFYVDGAANRETKSGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIQKEKVYLAWVPAHKGIGGNEQVDKLVSSGIRKVLFLDGIDKAQDEHEKYHSNWRAMASDFNIPPVVAKEIVACCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPNFTSNAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKQLKQIIGQVREQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDGCVASRQDED*,TTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGGAGGCCAGGGAACTTTCCTCAAAGCAGAACAGAACCAACAGCCCCACCAGAGGAGAGCTTCAGTTTTGGGGAGAAGACAACAACTCCTTCTCAGAAGCAGGAGCCGATAGACCAGGAACTATACCCTCTGTCTTCCCTCAAATCACTCTTTGGCAACGACCCTTAGTCACAGTAAGGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTGTTAGAAGAAATGAGTTTACCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGCTTTATCAAAGTAAAACAGTATGATCAGATATCAGTAGAAATTTGTGGACATAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAATATAATTGGAAGAAATCTGTTGACTCAGATTGGTTGTACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAGAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAACAGAAATTTGTAAGGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAATATTTGCTATAAAGAAAAAAGACAGTACTAAATGGAGAAAGTTAGTAGATTTTAGAGAACTTAATAAGAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACACCCCGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCCTAGATGAAGACTTCAGGAAGTATACTGCATTTACCATACCTAGTACAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTACTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGACATAGTTATATATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAGTAGAGGAACTGAGACAACATCTGTTGAAGTGGGGGTTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTTCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATACAACTGCCAGAGAAAGACAGCTGGACTGTCAATGATATACAGAAATTAGTGGGAAAGTTGAATTGGGCAAGTCAGATTTATCCAGGGATTAAAGTAAGGCAGTTATGTAAACTACTTAGAGGAGCCAAGGCGCTGACAGAAGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATCCTAAAAGAACCAGTACATGGAGTGTATTATGACCCAACAAAAGACTTAATAGCAGAAATACAGAAGCAGGGGCAAGGTCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAACTTGAAAACAGGAAAATATGCAAGAACAAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAGCCACAGAAAGCATAGTAATATGGGGAAAGACCCCTAAATTTAGACTACCCATTCAAAAAGAAACATGGGAATCATGGTGGACAGAATATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAAAAAGAACCCATAATAGGAGCAGAGACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACAAAATCAGGAAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAAGTTATCTCCCTAACTGACACAACAAATCAGAAGACTGAGTTACAAGCAATTCATCTAGCTTTGCAGGATTCAGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAGGCACAACCAGATAAAAGCGAATCAGAGTTAGTCAATCAAATAATAGAGCAATTAATACAAAAGGAAAAGGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGGGGAAATGAACAAGTAGATAAATTAGTCAGTTCTGGAATCAGAAAGGTACTATTTTTGGATGGAATAGATAAAGCCCAAGATGAGCATGAAAAATATCACAGTAATTGGAGAGCAATGGCTAGTGACTTTAACATACCACCTGTAGTAGCAAAAGAAATAGTAGCCTGCTGTGATAAATGTCAGCTAAAAGGAGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAATTAGATTGTACACATTTAGAAGGAAAAATTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGACAGGAAACAGCATACTTTCTCTTAAAATTAGCAGGAAGATGGCCAGTAACAACAATACATACAGACAATGGCCCCAACTTCACCAGTAATGCAGTTAAGGCCGCCTGTTGGTGGGCAGGGGTCAAACAAGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTCGTAGAATCTATGAATAAACAATTAAAACAAATTATAGGACAGGTAAGAGAGCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAATAGACATAATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAGGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTGGTAATACAAGATAATAGTGACATAAAAGTAGTACCAAGAAGAAAAGCAAAAATTATTAGGGATTATGGAAAACAGATGGCAGGTGATGGTTGTGTGGCAAGTAGACAGGATGAGGATTAG -MN090376,vif,4338,4929,5040,5619,forward,0.41770833333333335,MENRWQVMVVWQVDRMRISMWKSLVKYHIHNSGKARGWCYRHHYESRHPRISSEVHIPLGGEARLVVTTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPDLADQLIHLYYFNCFSESAIRQAILGHRVSPRCEYQAGHNKVGSLQYLALIALIPPKRKKPPLPSVRKLTEDRWKEPQRTKGHRESHTMNGH,MENRWQVMVVWQVDRMRISMWKSLVKYHIHNSGKARGWCYRHHYESRHPRISSEVHIPLGGEARLVVTTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPDLADQLIHLYYFNCFSESAIRQAILGHRVSPRCEYQAGHNKVGSLQYLALIALIPPKRKKPPLPSVRKLTEDRWKEPQRTKGHRESHTMNGH*NF*,ATGGAAAACAGATGGCAGGTGATGGTTGTGTGGCAAGTAGACAGGATGAGGATTAGCATGTGGAAAAGCTTAGTAAAATACCATATACATAATTCAGGGAAGGCTAGGGGATGGTGTTATAGACATCACTATGAAAGCAGACATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGAGGAGAGGCTAGACTAGTAGTGACAACATATTGGGGACTGCATACAGGAGAAAGAGACTGGCATTTGGGTCAAGGAGTCTCCATAGAATGGAGGAAAAGGAGATATAGCACACAAGTAGACCCTGACCTAGCAGACCAACTAATTCATCTGTATTATTTTAATTGTTTTTCAGAATCTGCTATAAGACAAGCCATATTAGGACATAGAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAATAAGGTAGGATCTCTGCAGTACTTGGCACTAATAGCATTAATACCACCAAAAAGGAAAAAGCCACCTTTGCCTAGTGTGAGGAAACTGACAGAGGATAGATGGAAAGAGCCCCAGAGGACCAAGGGCCACAGAGAGAGCCATACAATGAATGGACACTAGAACTTTTAG -MN090376,vpr,4859,5153,5558,5850,forward,0.44230769230769296,MERAPEDQGPQREPYNEWTLELLEELKREAVRHFPRAWLHGLGQHIYETYGDTWAGVEALIRILQQLVFIHFRIGCQHSRIGILTHRRARNGASRS,MERAPEDQGPQREPYNEWTLELLEELKREAVRHFPRAWLHGLGQHIYETYGDTWAGVEALIRILQQLVFIHFRIGCQHSRIGILTHRRARNGASRS*T,ATGGAAAGAGCCCCAGAGGACCAAGGGCCACAGAGAGAGCCATACAATGAATGGACACTAGAACTTTTAGAAGAGCTTAAAAGAGAAGCTGTTAGGCACTTTCCTAGGGCTTGGCTTCATGGCCTAGGACAACATATCTATGAAACTTATGGAGATACTTGGGCAGGAGTGGAAGCTCTAATAAGAATTCTGCAACAACTGGTGTTTATTCATTTCAGAATTGGATGTCAGCACAGCAGGATAGGCATTCTTACCCATAGAAGAGCAAGAAATGGAGCCAGTAGATCCTAGACT -MN090376,tat_exon1,5130,5346,5830,6045,forward,0.5833333333333333,MEPVDPRLEPWKHPGSQPRTACTSCYCKKCCYHCPRCFLTKGLGISYGRKKRRQRRRTPQDSRNHQVSLSKQ,MEPVDPRLEPWKHPGSQPRTACTSCYCKKCCYHCPRCFLTKGLGISYGRKKRRQRRRTPQDSRNHQVSLSKQ,ATGGAGCCAGTAGATCCTAGACTGGAGCCCTGGAAGCATCCAGGGAGTCAGCCTAGGACTGCGTGCACCAGTTGCTATTGTAAAAAGTGTTGCTATCATTGCCCGCGATGCTTCTTAACAAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAACTCCTCAGGATAGCCGGAACCATCAAGTTTCTTTATCAAAGCAG -MN090376,rev_exon1,5269,5347,5969,6045,forward,0.723076923076923,MAGRSGDSDEELLRIAGTIKFLYQSS,MAGRSGDSDEELLRIAGTIKFLYQSS,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAACTCCTCAGGATAGCCGGAACCATCAAGTTTCTTTATCAAAGCAGT -MN090376,vpu,5361,5631,6061,6310,forward,0.7073170731707319,MQSLEILAIVALVVAFIIAIVVWSIVLIEYRKIRRQKRIDRILDRIRERAEDSGNESEGDQEELAALVEMGNHAHLDMGHHAPWDVNDL,MQSLEILAIVALVVAFIIAIVVWSIVLIEYRKIRRQKRIDRILDRIRERAEDSGNESEGDQEELAALVEMGNHAHLDMGHHAPWDVNDL*,ATGCAATCTTTAGAAATATTAGCAATAGTAGCATTAGTAGTAGCATTTATAATAGCAATAGTCGTTTGGTCTATAGTACTCATAGAATATAGGAAAATAAGAAGACAAAAGAGAATAGACAGGATACTTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGGGACCAAGAAGAATTGGCAGCCCTCGTGGAGATGGGGAACCATGCTCATTTGGATATGGGCCACCATGCTCCTTGGGATGTCAATGACCTGTAA -MN090376,env,5524,8137,6224,8795,forward,0.5484813084112157,MRVKGTKKNWQPSWRWGTMLIWIWATMLLGMSMTCNAEDSWVTVYYGVPVWKEAATTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVELNVTENFNAWKNNMVDQMHEDIISLWDQSLKPCVKLTPLCVTLNCTNINSTNINNTNSIEREMTNCSFNVTTVIRDKVQKQYALFYKLDVVQIKDDNTSYNTSYRLINCNSSTITQACPKVSFEPIPIHYCAPAGFAILKCKDKNFNGTGLCKNVSTVQCTHGIRPVVSTQLLLNGSLAEGDVVIRSKNFSNSAQTIIVQLNETVEINCTRPNNNTRRSIHIGPGRAFYATGDIIGDIRQAHCNISRAKWNETLKKIADKLREQFKRETIVFNQSSGGDPEIVMHSFNCRGEFFYCNTTQLFNSTWNSTTGVNGTGANNTEVNIITLPCKIRQIVNMWQEVGKAMYAPPISGQISCSSNITGLLLLRDGGNSNDTDNTTEIFRPGGGDMRDNWRSELYKYKVVQIEPLGVAPTKARRRVVQREKRAVGIGALFLGFLGAAGSTMGAASITLTVQARHLLSGIVQQQNNLLRAIEAQQHMLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTNVPWNSSWSNKNLSYIWNNMTWMQWEKEIDNYTEEIYNLIEQSQNQQEKNEQELLELDKWASLWNWFDITKWLWYIKIFIMIVGGLIGLRIVFTVLSIVNRVRQGYSPLSFQTLLPAARGPDRPEGIGEEGGERDRDRSSHLAHGFLTIIWVDLRSLFLFSYHHLRDLLLIVARGVELLGRRGWEALKYWWNLLQYWSQELKNSAVSLLNATAIAVAEGTDRFIEVLQRIFRAIIHIPTRIRQGLERALL,MRVKGTKKNWQPSWRWGTMLIWIWATMLLGMSMTCNAEDSWVTVYYGVPVWKEAATTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVELNVTENFNAWKNNMVDQMHEDIISLWDQSLKPCVKLTPLCVTLNCTNINSTNINNTNSIEREMTNCSFNVTTVIRDKVQKQYALFYKLDVVQIKDDNTSYNTSYRLINCNSSTITQACPKVSFEPIPIHYCAPAGFAILKCKDKNFNGTGLCKNVSTVQCTHGIRPVVSTQLLLNGSLAEGDVVIRSKNFSNSAQTIIVQLNETVEINCTRPNNNTRRSIHIGPGRAFYATGDIIGDIRQAHCNISRAKWNETLKKIADKLREQFKRETIVFNQSSGGDPEIVMHSFNCRGEFFYCNTTQLFNSTWNSTTGVNGTGANNTEVNIITLPCKIRQIVNMWQEVGKAMYAPPISGQISCSSNITGLLLLRDGGNSNDTDNTTEIFRPGGGDMRDNWRSELYKYKVVQIEPLGVAPTKARRRVVQREKRAVGIGALFLGFLGAAGSTMGAASITLTVQARHLLSGIVQQQNNLLRAIEAQQHMLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTNVPWNSSWSNKNLSYIWNNMTWMQWEKEIDNYTEEIYNLIEQSQNQQEKNEQELLELDKWASLWNWFDITKWLWYIKIFIMIVGGLIGLRIVFTVLSIVNRVRQGYSPLSFQTLLPAARGPDRPEGIGEEGGERDRDRSSHLAHGFLTIIWVDLRSLFLFSYHHLRDLLLIVARGVELLGRRGWEALKYWWNLLQYWSQELKNSAVSLLNATAIAVAEGTDRFIEVLQRIFRAIIHIPTRIRQGLERALL*NGRHILKT*,ATGAGAGTGAAGGGGACCAAGAAGAATTGGCAGCCCTCGTGGAGATGGGGAACCATGCTCATTTGGATATGGGCCACCATGCTCCTTGGGATGTCAATGACCTGTAATGCAGAGGACTCGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAAAGAAGCAGCCACCACTCTATTTTGTGCATCAGATGCCAAAGCATATGACACAGAGGTACACAATGTCTGGGCCACACATGCTTGTGTACCCACAGACCCCAACCCACAAGAAGTAGAATTAAATGTAACAGAAAATTTTAATGCATGGAAAAATAACATGGTAGATCAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAACTGCACTAACATCAATAGCACTAATATAAACAATACCAATAGTATAGAAAGAGAAATGACAAACTGCTCTTTTAATGTCACCACAGTCATAAGAGATAAGGTGCAAAAACAATATGCACTTTTTTATAAACTTGATGTAGTACAAATTAAGGATGATAATACCAGCTATAATACCAGCTATAGGTTGATAAATTGTAACTCCTCAACCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAGGATAAGAATTTCAATGGAACAGGACTATGTAAAAATGTTAGCACAGTACAATGTACACATGGAATTAGGCCAGTAGTATCAACTCAACTGTTGTTAAATGGCAGTCTAGCAGAAGGAGATGTAGTAATTAGATCTAAAAATTTCTCTAACAGTGCTCAAACCATAATAGTACAATTAAACGAAACTGTAGAAATTAATTGTACAAGACCCAACAATAATACAAGAAGAAGTATACATATAGGACCAGGGAGAGCATTTTATGCAACAGGAGACATAATAGGAGATATAAGACAAGCACATTGTAACATTAGTAGAGCAAAATGGAATGAGACTTTAAAAAAGATAGCTGATAAATTAAGGGAACAATTTAAAAGAGAGACAATAGTCTTTAACCAATCCTCAGGAGGGGACCCAGAGATTGTAATGCACAGTTTTAATTGTAGAGGGGAATTTTTCTACTGTAATACAACACAACTGTTTAATAGTACTTGGAATAGTACTACAGGAGTAAATGGTACAGGAGCAAATAACACAGAAGTAAATATTATCACACTCCCATGCAAGATAAGGCAAATTGTAAACATGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCATCAGTGGACAAATTAGTTGTTCATCAAATATTACAGGGCTACTACTACTAAGAGATGGTGGTAATAGCAATGACACGGATAACACGACTGAAATCTTCAGACCTGGAGGAGGAGATATGAGGGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTACAAATTGAACCATTAGGAGTAGCACCCACCAAGGCAAGGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTCTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCATCAATAACGCTGACGGTACAAGCCAGACATTTATTGTCTGGTATAGTGCAACAGCAGAACAATTTGCTGAGAGCTATTGAGGCGCAACAGCATATGTTGCAGCTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTAGAAAGATACCTTAAGGATCAACAGCTCCTGGGGATTTGGGGTTGCTCTGGAAAACTCATCTGCACCACTAATGTGCCTTGGAATAGTAGTTGGAGTAATAAAAATCTGAGTTACATTTGGAATAACATGACCTGGATGCAGTGGGAAAAAGAAATTGACAATTACACAGAGGAAATATACAACTTAATTGAACAATCGCAAAACCAGCAAGAAAAGAATGAACAAGAATTATTGGAATTGGATAAATGGGCAAGTTTGTGGAATTGGTTTGACATAACAAAGTGGCTGTGGTATATAAAAATATTTATAATGATAGTAGGAGGCTTAATAGGTTTAAGAATAGTTTTTACTGTACTTTCTATAGTGAATAGAGTTAGGCAGGGATACTCACCATTATCGTTTCAGACCCTCCTCCCAGCCGCGAGGGGACCCGACAGGCCCGAAGGAATCGGAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCAGTCACTTAGCGCATGGATTCTTAACAATTATCTGGGTCGACCTGCGGAGCCTGTTCCTCTTCAGTTACCACCACTTGAGAGACTTACTCTTGATTGTAGCGAGGGGTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAGTATTGGTGGAATCTCCTGCAGTATTGGAGCCAGGAACTAAAGAATAGTGCTGTCAGCTTGCTCAACGCCACAGCCATAGCAGTAGCTGAGGGGACAGATAGGTTTATAGAAGTATTGCAAAGAATTTTTAGAGCTATTATCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCTTTGCTATAAAATGGGAGGCATATTCTCAAAACGTAA -MN090376,tat_exon2,7691,7784,8376,8469,forward,0.4866666666666659,RPSSQPRGDPTGPKESEKKVERETETDPVT,RPSSQPRGDPTGPKESEKKVERETETDPVT*,AGACCCTCCTCCCAGCCGCGAGGGGACCCGACAGGCCCGAAGGAATCGGAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCAGTCACTTAG -MN090376,rev_exon2,7692,7968,8377,8653,forward,0.46153846153846145,DPPPSREGTRQARRNRRRRWRERQRQIQSLSAWILNNYLGRPAEPVPLQLPPLERLTLDCSEGCGTSGTQGVGSPQVLVESPAVLEPGTKE,DPPPSREGTRQARRNRRRRWRERQRQIQSLSAWILNNYLGRPAEPVPLQLPPLERLTLDCSEGCGTSGTQGVGSPQVLVESPAVLEPGTKE*,GACCCTCCTCCCAGCCGCGAGGGGACCCGACAGGCCCGAAGGAATCGGAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCAGTCACTTAGCGCATGGATTCTTAACAATTATCTGGGTCGACCTGCGGAGCCTGTTCCTCTTCAGTTACCACCACTTGAGAGACTTACTCTTGATTGTAGCGAGGGGTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAGTATTGGTGGAATCTCCTGCAGTATTGGAGCCAGGAACTAAAGAATAG -MN090376,nef,8111,8735,8796,9417,forward,0.6943089430894234,MGGIFSKRNGGGWPAIRERMRRAQPAADGVGAASRDLERHGALTSNNTSANNADCAWLEAQEEGEEVGFPVRPQVPLRPMTYKGAVDLSHFLKEKGGLEGLIYSQQRQDILDLWVYNTQGYFPDWQNYTPGPGIRYPLTFGWCFKLVPMEPEDVEKATEGEDNILLHPVNQHGMDDSEREVLVWKFDSRLAFRHVAREIHPEYYKNC,MGGIFSKRNGGGWPAIRERMRRAQPAADGVGAASRDLERHGALTSNNTSANNADCAWLEAQEEGEEVGFPVRPQVPLRPMTYKGAVDLSHFLKEKGGLEGLIYSQQRQDILDLWVYNTQGYFPDWQNYTPGPGIRYPLTFGWCFKLVPMEPEDVEKATEGEDNILLHPVNQHGMDDSEREVLVWKFDSRLAFRHVAREIHPEYYKNC*,ATGGGAGGCATATTCTCAAAACGTAATGGGGGTGGGTGGCCTGCAATAAGGGAAAGAATGAGACGAGCTCAGCCAGCAGCAGATGGGGTAGGAGCAGCATCTCGAGACCTGGAAAGACATGGAGCTCTCACAAGTAACAATACATCAGCTAACAATGCTGATTGTGCCTGGCTGGAAGCACAGGAAGAGGGGGAAGAAGTGGGTTTCCCAGTCAGACCTCAGGTACCTTTAAGACCAATGACATACAAGGGAGCTGTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGTTAATTTACTCCCAACAAAGACAAGATATCCTTGATCTGTGGGTCTACAACACACAGGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGATAAGATATCCACTGACCTTTGGATGGTGCTTCAAGCTAGTACCAATGGAACCAGAGGATGTAGAAAAGGCCACTGAAGGAGAGGACAACATCTTGTTACACCCTGTGAACCAGCATGGGATGGACGACTCAGAGAGAGAAGTGTTAGTGTGGAAGTTTGACAGCCGCCTAGCATTCCGTCACGTGGCCCGAGAGATACATCCGGAGTACTACAAGAACTGCTGA -MK115581.1,gag,680,2186,789,2292,forward,0.2571999999999999,MGARASILSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWTTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSANVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE,MGARASILSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWTTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSANVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE*R*,ATGGGTGCGAGAGCGTCAATATTAAGCGGGGGAAAATTAGATGCATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATTTAGTATGGGCAAGCAGGGAGCTAGAACGATTTGCCGTTAACCCTGGCCTGTTAGAAACATCAGAGGGATGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATTTAATGCAGTAGCAGTCCTCTATTGTGTACATCAAAGGATACAGGTACAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGTAGCAGCAGCTGACACTGACACAGGAAACAGCAGCCAAAATTACCCCATAGTGCAGAACCTCCAGGGGCAAATGGTACATCAGCCCCTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAAAAGGCCTTCAGCCCAGAAGTCATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGACGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCTTGGGATTAAATAAAATAGTAAGGATGTATAGCCCTACCAGTATTCTGGATATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAGAACTTTAAGAGCTGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATTCGAATCCAGATTGTAAGACTATTTTAAAAGCATTAGGACCAGCAGCAACACTAGAGGAAATGATGACAGCATGTCAAGGAGTGGGGGGACCAGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAAATTCAGCTAATGTAATGATGCAGAGAGGCAATTTTAGAAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACATCAAATGAAAGACTGTACAGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAG -MK115581.1,pol,1972,4984,2084,5096,forward,0.14755732801595212,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSTGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSTGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAGGGGGGCAATTTAAAGAAGCTTTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACCCATAGAAATCTGTGGACACAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGCTTGGTTGTACCTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTCAATAAGAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAATTCCCTTAGATAAAGAATTCAGGAAGTATACTGCATTTACCATACCTAGTACAAATAATGAGACACCAGGGATTAGGTATGAGTACAATGTGCTGCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGCAAAATCCAGATATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAACTGAGACAACATCTGTTAAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAGTGGACAGTACAGCCTATAATACTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTACGCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAGGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTTTAAGAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGCAATGGACAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTACAAAAGATAGCCACAGAAAGCATAGTAATATGGGGAAAAACTCCTAAATTTAGACTACCTATACAAAAAGAAACATGGGAGACATGGTGGGCAGAGTACTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAATTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACTAAATTAGGCAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAGGTTATCTCCCTAACGGACACAACAAATCAAAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATCAGAAGTAAACATAGTAACAGACTCACAATATACATTAGGAATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAATCAGATAATAGAGCAGTTAATAAAAAAGGAAAAAGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGACAAACTAGTCAGTACTGGAGTCAGGAGAGTACTATTTCTAGATGGAATAGATAAGGCCCAAGAAGACCATGAGAAATATCACAGTAATTGGAGAGCAATGGCTGGTGATTTTAATATACCCCCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCAAAAAGGAGAGGCCATGCATGGACAAGTAGATTGTAGTCCAGGAATATGGCAACTAGATTGTACACATCTAGAAGGGAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTCTCCTGAAACTAGCAGGGAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTAATGTGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCCATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTATAGTGCAGGGGAAAGAATAGTAGATATAATAGCAACAGACCTACAAACTAAAGAATTACAGAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGGAGAAAAGCAAAAATCATTAGGGATTATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG -MK115581.1,vif,4928,5507,5040,5619,forward,0.35416666666666674,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH*,ATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATGTTTCAAAGAAAACTAAAGGATGGTTTTATAGACATCACTATGAAAGCACTCATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTGGTAGTAACAACATATTGGGGCCTGAATACAGGAGAAAGAGAATGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGAAAAAGGAAATATAGCACACAAGTTGACCCTAACCTAGCAGACCAACTAATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACATATAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGCTCTCTACAATACTTGGCACTAAAAGCATTAACAACACCAAAGAGAAGAAAGCCACCTTTACCTAGTGTTAGGAAACTGACAGAGGATAGATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAG -MK115581.1,vpr,5446,5740,5558,5850,forward,0.4038461538461544,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS*T,ATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAGAGCTTTTAGAGGAACTTAAGAATGAAGCGGTTAGACATTTTCCTAGGCCGTGGCTCCATGGCTTAGGACAACATATCTATGAAACTTATGGGGACACTTGGACAGGAGTGGAGGCCATAATAAGAACCCTGCAACAACTGCTGTTTATTCATTTCAGACTTGGGTGTCGACATAGCAGAATAGGCATTGTGCCACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACT -MK115581.1,tat_exon1,5717,5936,5830,6045,forward,0.29166666666666674,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ*,ATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCACCCAGGAAGTCAGCCTAAAACTCCTTGTACTAACTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAAAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGTAA -MK115581.1,rev_exon1,5856,5934,5969,6045,forward,0.5769230769230769,MAGRSGDSDEELLKAVRLIKILYQSS,MAGRSGDSDEELLKAVRLIKILYQSS,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGT -MK115581.1,vpu,5948,6194,6061,6310,forward,0.6865853658536587,MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAKDSGNESEGDQEELSALMEMGHHAPGDVDDL,MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAKDSGNESEGDQEELSALMEMGHHAPGDVDDL*,ATGCAACCTCTGCACATAGCAGCAATAGTAGGATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGACCATAGTGTTAATAGAATATAGGAAAATATTAAGACAAAAAAGGATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAAAAGACAGTGGCAATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAG -MK115581.1,env,6111,8652,6224,8795,forward,0.49135514018691584,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEAHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRNKMQKEYALFYKLDVVPIDNDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYENKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSETETFRPGGGDMKDNWRSELYKYKVEKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEAHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRNKMQKEYALFYKLDVVPIDNDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYENKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSETETFRPGGGDMKDNWRSELYKYKVEKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL*,ATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTGACAGTCTATTATGGGGTACCTGTATGGAAAGAAGCAAACACCACTCTATTTTGTGCATCGGATGCTAAAGCATATACCACAGAGGCACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGGATTGGAAAATGTGACAGAAAATTTTAACATGTGGAAAAATAACATGGTAGAACAGATGCATGAGGATGTAATCAATTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCACTAATCTGAATGTTACTAATACCAATAGCAGTAGTGAGGAGGGAAAGATGGCGGAAGAAATGAGAAACTGCTCTTTCAATATCACCACAAAAATAAGAAATAAGATGCAGAAGGAATATGCACTTTTTTATAAACTTGATGTAGTACCAATAGATAATGATAATACAAGTTATACATTGATAAATTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCTATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAGGATAAGAAGTTCAATGGATCAGGACCATGTAAAAATGTCAGCACAGTACAATGTACACATGGAATTAAGCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTTTAGCAGAAGAAGAGGTAGTAATTAGATCTGAAAATTTCACGAACAATGCTAAAACCATAATAGTACATCTGAAGGAACCTATACAAATTAATTGTACAAGACCCAACAACAATACAATGAAAAGTATCCCTCTAGGACCAGGAAGAGCATTCTATGCAACAGGAGCCATAATAGGAGATATAAGACAAGCACATTGTAACCTTAGTAGAAAAGCATGGAATAATACTTTAAAACAGGTAGTTGAAAAATTAAAAGAACAATATGAGAATAAAACAATAATCTTTAATCACTCCTCAGGAGGGGACCCAGAAATTATAATGCATACTTTTAATTGTGGAGGGGAATTTTTCTATTGTAATACAACACAGCTGTTTAATAGTACTTGGAATAGTACTTGGACTGGGAATGCTACCGAATTAGATGGAAACATCACACTCCCATGCAGAATAAAACAGATTATAAACAGGTGGCAAGAAGTAGGAAAAGCAATGTATGCCCCTCCCATTAGAGGAAAAATTAGATGTTCATCAAATATTACAGGGTTACTATTAGTAAGAGATGGTGGTAACACGAGCGAGACTGAGACCTTCAGACCTGGAGGAGGAGATATGAAGGACAATTGGAGGAGTGAATTATATAAATATAAAGTAGAAAAAATTGAGCCATTAGGAGTAGCACCCACCAGGGCAAAGAGAAGAGTGGTGCAAAGAGAAAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAAGCCAGGCTGTTATTGTCTGGTATAGTGCAACAGCAAAACAATTTGCTGAGAGCTATTGAGGCGCAACAACATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTACAGGATCAACAGCGCCTGGGAATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCCTGGAATGCTAGTTGGAGTAATAAATCTCTGAATCAGATTTGGGATAACATGACCTGGATGGAGTGGGAAAGAGAAATTAACAATTACACAGACACAATATACACCTTAATTGAAAAGGCGCAGAACCAGCAGGAAAAAAATGAACAAGAATTATTGGAATTGGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAAATGGCTGTGGTACATAAAATTATTCATAATGATAGTAGGAGGATTGATAGGTTTAAGAATAGTTTTTGCTGTACTTGCTATAGTAAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGCCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAGCTTATTCAATGTCACAGCCATCGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAAGAGCTTGTAGAGCTCTTCTCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCATTGTTATAA -MK115581.1,tat_exon2,8233,8329,8376,8469,forward,0.28666666666666596,RPTSQPRGDPTGPKESKKKVEKETETDQFD,RPTSQPRGDPTGPKESKKKVEKETETDQFD**,AGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGA -MK115581.1,rev_exon2,8234,8519,8377,8653,forward,0.39560439560439553,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVPLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVPLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE*CY*,GACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGCCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAG -MK115581.1,nef,8653,9274,8796,9417,forward,0.6162601626016186,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPMSLHGMEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPMSLHGMEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC*H*,ATGGGGGGCAAGTGGTCAAAAAGTAGTGGGGGTGGATGGCCTGCTGTAAGGGAAAGAATGAGACGAACTGAGCCAGCAGCAGAAGGGGTGGGAGCAGTATCTCGAGACCTGGAAAGACATGGAGCAGTCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGCGCCTGGCTGGAAGCACAAGAAGAGGACAGTGAAGTGGGTTTTCCAGTCAGACCTCAGGTGCCTTTAAGACCAATGACTTTCAAAGGAGCTCTCGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCCCAAAAAAGACAAGATATCCTTGACCTGTGGGTCTACAACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGACCAGATATCCACTGACCTTTGGGTGGTGTTTCAAGCTAGTACCAGTGGAGCCAGAAGAGGCCAATCAAGGAGAGAACAACTGCTTGTTACACCCTATGAGCCTGCATGGGATGGAGGACCCGGAAAAAGAAGTATTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCACATGGCCCGAGAGAAGCATCCGGAGTACTACAAAGACTGCTGACATTGA -MK115690.1,gag,777,2292,789,2292,forward,0.1894,MGARASVLSGGELDKWEKIRLRPGGKKKYRLKHIVWASRELERFAVNPGLLETSEGCRQIMGQLQPALQTGSEELRSLYNTVATLYCVHQRIEVKDTKEALEKVEEEQNKSKKKAQQAAAGAGNSSQTSTSQNYPIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQATNSAAIMMQRGNFRNQRKSVKCFNCGKDGHIAKNCRAPRRKGCWKCGKEGHQMKDCPERQANFLGKIWPSHKGRPGNFLQNRPEPTAPPEESFRFGEETTTPSQKQEKIDQDLYPLASLKSLFGNDPSSQ,MGARASVLSGGELDKWEKIRLRPGGKKKYRLKHIVWASRELERFAVNPGLLETSEGCRQIMGQLQPALQTGSEELRSLYNTVATLYCVHQRIEVKDTKEALEKVEEEQNKSKKKAQQAAAGAGNSSQTSTSQNYPIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQATNSAAIMMQRGNFRNQRKSVKCFNCGKDGHIAKNCRAPRRKGCWKCGKEGHQMKDCPERQANFLGKIWPSHKGRPGNFLQNRPEPTAPPEESFRFGEETTTPSQKQEKIDQDLYPLASLKSLFGNDPSSQ*R*,ATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAGAATTAGACAAGTGGGAAAAAATTCGGTTGAGGCCAGGGGGAAAGAAAAAATATAGATTAAAGCATATCGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTTAACCCTGGCCTGTTAGAAACATCAGAAGGCTGTAGACAAATAATGGGACAGCTACAACCAGCCCTTCAGACAGGATCAGAAGAACTTAGATCATTGTATAATACAGTAGCAACCCTCTATTGTGTACATCAAAGGATAGAGGTAAAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAAGCACAGCAAGCAGCAGCTGGCGCAGGAAACAGCAGTCAGACCAGCACCAGCCAAAATTACCCTATAGTACAGAACATTCAGGGGCAAATGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTCTCAGCACTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTACATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAGCCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGGATGGATGACTAATAATCCACCTATCCCAGTAGGAGAAATTTATAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGAATGTATAGCCCCACCAGCATTCTAGACATAAGACAAGGACCAAAGGAGCCCTTTAGAGACTATGTAGATCGGTTCTATAAAACTCTAAGAGCCGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTAGTCCAAAATGCGAACCCAGATTGTAAGACTATTTTAAAAGCATTGGGTCCAGCAGCTACACTAGAGGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCCGGTCATAAAGCAAGAGTTTTAGCGGAAGCAATGAGCCAAGCAACAAATTCAGCTGCCATAATGATGCAGAGAGGCAATTTTAGGAACCAAAGAAAAAGTGTTAAGTGTTTTAATTGCGGCAAAGATGGGCACATAGCAAAAAATTGCAGGGCCCCTAGAAGAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGATTGTCCAGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGGAGGCCAGGGAATTTTCTTCAGAACAGACCAGAGCCAACAGCCCCACCAGAGGAGAGCTTCAGGTTTGGGGAGGAGACAACAACTCCCTCTCAGAAGCAGGAGAAGATAGACCAGGACCTGTATCCTTTAGCTTCCCTCAAATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGGTAG -MK115690.1,pol,2078,5090,2084,5096,forward,0.13958125623130613,FFRENLAFPQGEAREFSSEQTRANSPTRGELQVWGGDNNSLSEAGEDRPGPVSFSFPQITLWQRPLVTIKVGGQLKEALLDTGADDTVLEDMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGVRYQYNVLPQGWKGSPAIFQSSMTKILEPYRKQNPNIVIYQYMDDLYVGSDLEIGQHRIKIEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIALPEKESWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGAKALTEVIPLTKEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQEQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKSGKAGYVTNRGRQKVIPLTDTTNQKTELHAIYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQEAAYFILKLAGRWPVATIHTDNGSNFTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDVIATDLQTKELQKQITKIQHFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSEIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED,FFRENLAFPQGEAREFSSEQTRANSPTRGELQVWGGDNNSLSEAGEDRPGPVSFSFPQITLWQRPLVTIKVGGQLKEALLDTGADDTVLEDMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGVRYQYNVLPQGWKGSPAIFQSSMTKILEPYRKQNPNIVIYQYMDDLYVGSDLEIGQHRIKIEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIALPEKESWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGAKALTEVIPLTKEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQEQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKSGKAGYVTNRGRQKVIPLTDTTNQKTELHAIYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQEAAYFILKLAGRWPVATIHTDNGSNFTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDVIATDLQTKELQKQITKIQHFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSEIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGGAGGCCAGGGAATTTTCTTCAGAACAGACCAGAGCCAACAGCCCCACCAGAGGAGAGCTTCAGGTTTGGGGAGGAGACAACAACTCCCTCTCAGAAGCAGGAGAAGATAGACCAGGACCTGTATCCTTTAGCTTCCCTCAAATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGGTAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGACATGAGTTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAAATACTCATAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGATTGGTTGCACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGCACAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATAGGGCCTGAGAATCCATACAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGACTTCAGAGAACTAAATAAGAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCCGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCCTATTTTTCAGTTCCCTTAGACAAAGACTTCAGGAAGTATACTGCATTTACCATACCTAGTATAAACAATGAGACACCAGGGGTTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAACCTTATAGAAAACAAAATCCAAACATAGTTATATATCAATACATGGATGATTTGTATGTAGGATCTGACCTAGAAATAGGGCAGCATAGAATAAAAATAGAAGAACTGAGACAACATCTGTTGAAGTGGGGATTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGGTATGAACTCCATCCTGACAAGTGGACAGTACAGCCTATAGCGCTGCCAGAAAAAGAAAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTGAACTGGGCAAGTCAGATCTACCCAGGAATTAAAGTAAGGCAATTATGTAAACTACTTAGGGGAGCCAAAGCACTAACAGAAGTAATACCACTAACAAAAGAAGCAGAGCTAGAATTAGCAGAAAACAGGGAGATTCTAAAAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAGCAGGAGCAAGGCCAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTGACAGAGGCAGTGCAAAAAATAGCCACAGAAAGCATAGTGATATGGGGAAAGACTCCTAAATTTAGACTACCCATACAAAAAGAAACATGGGAAGCATGGTGGACAGAATATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTAAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAACAGGGAAACTAAATCAGGAAAAGCAGGATATGTTACTAATAGAGGAAGACAAAAAGTTATCCCCCTAACTGACACAACAAATCAGAAGACTGAGTTACATGCAATTTATCTAGCTTTGCAAGATTCGGGATTAGAAGTAAATATAGTAACAGACTCACAGTATGCATTAGGAATCATTCAAGCACAACCAGATAAAAGTGAATCAGAGTTAGTCAGTCAAATAATAGAGCAGTTAATAAAAAAGGAAAAGGTCTATCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTGCTGGAATCAGGAAAGTACTGTTTTTAGATGGAATAGATAAGGCCCAAGAAGACCATGAGAAATATCACAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTGGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGAGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAACTAGATTGTACACATTTAGAAGGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTCATTCCAGCAGAGACAGGGCAGGAAGCAGCATACTTTATTTTAAAATTAGCAGGACGATGGCCAGTAGCAACAATACATACAGACAATGGCAGCAATTTCACCAGTGCTACAGTTAAGGCCGCCTGCTGGTGGGCAGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAACAATGAATTGAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAGTAGACGTAATAGCAACAGACTTACAAACTAAAGAACTACAAAAACAAATTACAAAAATTCAACATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTCCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGAAATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATTATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG -MK115690.1,vif,5034,5622,5040,5619,forward,0.40104166666666674,MENRWQVMIVWQVDRMRIRRWHSLVKHHIYISGKARGWVYKHHYENTHPRISSKVYIPLGEARLAVTTYWGLHTGERDWHLGQGVSIEWRKKEYSTQVDPNLADQLIHLYYFDCFSESAIRNVILGHRVSPRCEYQAGHNKVGSLQYLALTALVTPKKTKPPLPSITKLTEDRWNKPQRTKGHRGNHTMNGH,MENRWQVMIVWQVDRMRIRRWHSLVKHHIYISGKARGWVYKHHYENTHPRISSKVYIPLGEARLAVTTYWGLHTGERDWHLGQGVSIEWRKKEYSTQVDPNLADQLIHLYYFDCFSESAIRNVILGHRVSPRCEYQAGHNKVGSLQYLALTALVTPKKTKPPLPSITKLTEDRWNKPQRTKGHRGNHTMNGH*SF*,ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAAGATGGCACAGTTTAGTAAAACACCATATATATATTTCAGGGAAAGCTAGAGGATGGGTTTATAAACATCACTATGAAAACACTCATCCAAGAATAAGTTCAAAAGTATACATCCCACTAGGGGAAGCTAGACTGGCAGTAACAACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCACTTGGGTCAGGGAGTCTCCATAGAATGGAGGAAAAAGGAATATAGCACACAAGTAGACCCTAACCTAGCAGACCAACTAATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGTCATATTAGGACATAGAGTTAGCCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGATCTTTACAGTACTTGGCACTAACAGCATTAGTAACACCAAAAAAGACAAAGCCACCTTTGCCTAGTATTACGAAACTGACAGAGGATAGATGGAACAAGCCCCAGAGAACCAAGGGCCACCGAGGGAACCATACAATGAATGGGCACTAGAGCTTTTAG -MK115690.1,vpr,5552,5846,5558,5850,forward,0.5576923076923082,MEQAPENQGPPREPYNEWALELLEELKSEAVRHFPRMWLHGLGQHIYETYGDTWTGVEALIRSLQQLLFIHFRIGCRHSRIGITPQRRTRNGASRS,MEQAPENQGPPREPYNEWALELLEELKSEAVRHFPRMWLHGLGQHIYETYGDTWTGVEALIRSLQQLLFIHFRIGCRHSRIGITPQRRTRNGASRS*S,ATGGAACAAGCCCCAGAGAACCAAGGGCCACCGAGGGAACCATACAATGAATGGGCACTAGAGCTTTTAGAGGAGCTTAAGAGTGAAGCTGTTAGACATTTTCCTAGGATGTGGCTCCATGGCTTAGGGCAACACATCTATGAGACTTATGGGGATACTTGGACAGGAGTGGAAGCCTTAATAAGAAGTCTGCAACAACTGCTGTTCATTCATTTCAGAATTGGGTGTCGACATAGCAGAATAGGAATTACTCCACAGAGGAGAACAAGAAATGGAGCCAGTAGATCCTAATCT -MK115690.1,tat_exon1,5823,6039,5830,6045,forward,0.45833333333333326,MEPVDPNLEPWKHPGSQPKTACTTCYCKQCCYHCQVCFITKGLGISYGRKKRRQRRGSPQDSQIHQASLSKQ,MEPVDPNLEPWKHPGSQPKTACTTCYCKQCCYHCQVCFITKGLGISYGRKKRRQRRGSPQDSQIHQASLSKQ,ATGGAGCCAGTAGATCCTAATCTAGAGCCCTGGAAGCATCCAGGAAGCCAGCCTAAGACTGCTTGTACCACTTGCTATTGTAAACAGTGTTGCTATCATTGCCAAGTTTGTTTCATAACCAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAACGACGAGGATCTCCTCAAGACAGTCAGATTCATCAAGCTTCTCTATCAAAGCAG -MK115690.1,rev_exon1,5962,6040,5969,6045,forward,0.6923076923076923,MAGRSGDNDEDLLKTVRFIKLLYQSS,MAGRSGDNDEDLLKTVRFIKLLYQSS,ATGGCAGGAAGAAGCGGAGACAACGACGAGGATCTCCTCAAGACAGTCAGATTCATCAAGCTTCTCTATCAAAGCAGT -MK115690.1,vpu,6054,6300,6061,6310,forward,0.552439024390244,MQSLAILAIVALVVAAIIAIVVWTIVFIEYRKILRQRKIDRLIDRIRERAEDSGNESEGDHEELSALMEMGHHAPWDVDDL,MQSLAILAIVALVVAAIIAIVVWTIVFIEYRKILRQRKIDRLIDRIRERAEDSGNESEGDHEELSALMEMGHHAPWDVDDL*,ATGCAATCTTTAGCAATATTAGCAATAGTAGCATTAGTAGTAGCAGCCATAATAGCAATAGTTGTGTGGACCATAGTATTCATAGAATATAGGAAAATATTAAGACAAAGGAAAATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGATAGTGGCAATGAGAGTGAAGGGGATCATGAAGAATTATCAGCACTTATGGAGATGGGGCATCATGCTCCTTGGGATGTTGATGATCTGTAG -MK115690.1,env,6217,8800,6224,8795,forward,0.5558411214953274,MRVKGIMKNYQHLWRWGIMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYDTEAHNVWATHACVPTDPNPQEIGLENVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLHCTKLEINSTKKTNSTNNGTNINATDDSWGEMKNCSFNTTASIRDKVQREFALFYKLDIVPIDNDDINYRLISCNTSVLTQACPKVSFEPIPIHYCAPAGFAILKCRDKNFNGTGQCKNVSTVQCTHGIRPVVSTQLLFNGSLAEEEVVIKSENITDNTKTIIVQLNASVAIVCTRPNNNTRKSIPIGPGRAFYAAGDIIGDIRRAHCILNKTTWDNTIEQVAKKLREQFENKTIVFSESSGGDPEITMISFNCGGEFFYCNSVQLFNSTWHNNGSSTTGSSSSEGNITLPCKIKQIINMWQEVGKAMYAPPIRGPISCESNITGLLLTRDGGNDANGNNTETFRPGGGNMRDNWRSELYRYKVVKIEPLGVAPTRAQRRVVQREKRAVGLGALFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQNNLLRAIEAQQHMLQLTVWGIKQLQARVLAVERYLKDQQLLGLWGCSGKLICNTAVPWNTSWSNKSLDDIWHNMTWMEWEREIDNYTNIIYSLIEASQTQQEKNEQELLELDKWASLWNWFSISNWLWYIKIFIMIVGGLVGLRIVFTILSIVNRVRKGYSPLSFQTHLPAQRGPDRPEGTGDEGGEQDRDRSTHLVDGFLAIIWVDLRNLCLFLYHRLRDLLLIAARIVELLGRRGWEALKYWWNLLQYWRRELKNSAVSLLNATAIAVAEGTDRVIEGLRRAFRAIIHIPRRIRQGLERALQ,MRVKGIMKNYQHLWRWGIMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYDTEAHNVWATHACVPTDPNPQEIGLENVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLHCTKLEINSTKKTNSTNNGTNINATDDSWGEMKNCSFNTTASIRDKVQREFALFYKLDIVPIDNDDINYRLISCNTSVLTQACPKVSFEPIPIHYCAPAGFAILKCRDKNFNGTGQCKNVSTVQCTHGIRPVVSTQLLFNGSLAEEEVVIKSENITDNTKTIIVQLNASVAIVCTRPNNNTRKSIPIGPGRAFYAAGDIIGDIRRAHCILNKTTWDNTIEQVAKKLREQFENKTIVFSESSGGDPEITMISFNCGGEFFYCNSVQLFNSTWHNNGSSTTGSSSSEGNITLPCKIKQIINMWQEVGKAMYAPPIRGPISCESNITGLLLTRDGGNDANGNNTETFRPGGGNMRDNWRSELYRYKVVKIEPLGVAPTRAQRRVVQREKRAVGLGALFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQNNLLRAIEAQQHMLQLTVWGIKQLQARVLAVERYLKDQQLLGLWGCSGKLICNTAVPWNTSWSNKSLDDIWHNMTWMEWEREIDNYTNIIYSLIEASQTQQEKNEQELLELDKWASLWNWFSISNWLWYIKIFIMIVGGLVGLRIVFTILSIVNRVRKGYSPLSFQTHLPAQRGPDRPEGTGDEGGEQDRDRSTHLVDGFLAIIWVDLRNLCLFLYHRLRDLLLIAARIVELLGRRGWEALKYWWNLLQYWRRELKNSAVSLLNATAIAVAEGTDRVIEGLRRAFRAIIHIPRRIRQGLERALQ*,ATGAGAGTGAAGGGGATCATGAAGAATTATCAGCACTTATGGAGATGGGGCATCATGCTCCTTGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTTACAGTCTATTATGGGGTACCTGTGTGGAAAGAAGCAAACACCACTCTATTCTGTGCATCAGATGCTAAAGCATATGATACAGAGGCACATAATGTTTGGGCCACACATGCCTGTGTACCTACAGACCCCAACCCACAAGAAATAGGATTGGAAAATGTGACAGAAAATTTTAACATGTGGAAAAATAACATGGTAGAACAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTACATTGCACTAAGTTGGAGATTAATAGCACTAAGAAGACTAATAGCACTAATAATGGTACTAACATCAATGCCACTGATGATAGTTGGGGGGAAATGAAAAACTGCTCTTTCAATACCACTGCAAGCATAAGAGATAAGGTACAGAGAGAATTTGCGCTTTTTTATAAACTTGATATAGTACCAATAGATAATGATGATATCAACTATAGGTTAATAAGTTGTAACACCTCAGTCCTTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAGAGATAAAAATTTCAATGGAACAGGACAATGTAAAAATGTCAGCACAGTGCAATGTACACATGGAATTAGGCCAGTAGTATCAACTCAACTGCTGTTCAATGGCAGTCTAGCAGAAGAAGAGGTAGTAATTAAATCTGAAAATATCACAGACAATACTAAAACTATAATAGTACAGCTGAATGCATCTGTAGCAATTGTTTGTACAAGACCCAACAACAATACAAGAAAAAGTATACCTATAGGGCCAGGGAGAGCGTTTTATGCAGCAGGAGATATAATAGGAGACATAAGACGAGCACACTGTATCCTTAACAAAACAACATGGGATAACACAATAGAACAGGTAGCTAAAAAATTAAGAGAACAATTTGAGAATAAGACAATAGTCTTTAGTGAATCCTCGGGAGGGGACCCAGAAATTACAATGATTAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAATTCAGTACAACTGTTTAATAGTACTTGGCATAATAATGGGAGTAGTACTACAGGGTCAAGTAGCAGTGAAGGCAATATCACACTCCCATGCAAAATAAAACAAATTATAAACATGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCATCAGAGGACCAATTAGCTGCGAGTCAAATATTACAGGGTTGCTACTAACAAGAGATGGTGGGAATGACGCTAACGGGAACAACACCGAGACCTTCAGACCTGGAGGAGGAAATATGAGGGACAATTGGCGAAGTGAATTATATAGATACAAAGTAGTAAAAATTGAACCATTAGGAGTAGCACCCACCAGGGCACAGAGAAGAGTGGTACAGAGAGAAAAAAGAGCAGTGGGTCTCGGAGCCTTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAATAACGCTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAGCAGCAGAACAATTTGCTGAGGGCTATTGAGGCGCAACAGCATATGTTGCAACTCACAGTCTGGGGCATCAAACAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTAAAGGATCAACAGCTCCTGGGGCTTTGGGGTTGCTCTGGAAAACTCATCTGCAACACTGCTGTGCCTTGGAATACTAGTTGGAGTAACAAATCTCTGGATGATATTTGGCATAACATGACCTGGATGGAGTGGGAAAGAGAAATTGACAATTACACAAACATAATATACAGCTTAATTGAGGCATCGCAAACCCAGCAAGAAAAGAATGAACAAGAATTACTAGAATTAGACAAATGGGCAAGTCTGTGGAATTGGTTTAGCATATCAAACTGGCTGTGGTACATAAAAATATTCATAATGATAGTAGGAGGCTTGGTAGGTTTAAGAATAGTTTTTACTATACTTTCTATAGTGAATAGAGTTAGGAAGGGATACTCACCATTATCGTTTCAGACCCACCTCCCAGCCCAGAGGGGACCCGACAGGCCCGAAGGAACCGGAGACGAAGGTGGAGAGCAAGACAGAGACAGATCCACTCACTTAGTGGATGGATTCTTAGCAATTATCTGGGTCGACCTGCGGAACCTGTGCCTCTTCCTCTACCACCGCTTGAGAGACTTACTCTTGATTGCAGCGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAATACTGGTGGAACCTTCTGCAGTATTGGAGGCGGGAACTAAAGAATAGTGCTGTTAGCTTGCTTAATGCCACAGCCATAGCAGTAGCTGAGGGGACAGATAGAGTTATAGAAGGATTGCGCAGAGCTTTTAGAGCTATTATCCACATACCTAGAAGAATAAGACAGGGCTTGGAAAGAGCTTTGCAATAA -MK115690.1,tat_exon2,8381,8489,8376,8469,forward,0.28666666666666596,RPTSQPRGDPTGPKEPETKVESKTETDPLT,RPTSQPRGDPTGPKEPETKVESKTETDPLT*WMDS*,AGACCCACCTCCCAGCCCAGAGGGGACCCGACAGGCCCGAAGGAACCGGAGACGAAGGTGGAGAGCAAGACAGAGACAGATCCACTCACTTAGTGGATGGATTCTTAG -MK115690.1,rev_exon2,8382,8658,8377,8653,forward,0.4505494505494505,DPPPSPEGTRQARRNRRRRWRARQRQIHSLSGWILSNYLGRPAEPVPLPLPPLERLTLDCSEDCGTSGTQGVGSPQILVEPSAVLEAGTKE,DPPPSPEGTRQARRNRRRRWRARQRQIHSLSGWILSNYLGRPAEPVPLPLPPLERLTLDCSEDCGTSGTQGVGSPQILVEPSAVLEAGTKE*,GACCCACCTCCCAGCCCAGAGGGGACCCGACAGGCCCGAAGGAACCGGAGACGAAGGTGGAGAGCAAGACAGAGACAGATCCACTCACTTAGTGGATGGATTCTTAGCAATTATCTGGGTCGACCTGCGGAACCTGTGCCTCTTCCTCTACCACCGCTTGAGAGACTTACTCTTGATTGCAGCGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAATACTGGTGGAACCTTCTGCAGTATTGGAGGCGGGAACTAAAGAATAG -MK115690.1,nef,8801,9425,8796,9417,forward,0.6089430894308867,MGGKWSKCSIVGWPTVRERIRRAEPAAEGVGAVSRDLEKHGAITSSNANNADCTWLEAQKEEEEVGFPVRPQVPLRPMTYKAALDLSHFLKEKGGLEGIIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRFPLTFGWCFKLVPVEPERVEEENKRENRCLLHPMSQHGMDDPEKEVLQWRFDSRLAFHHVARELHPEYYKN,MGGKWSKCSIVGWPTVRERIRRAEPAAEGVGAVSRDLEKHGAITSSNANNADCTWLEAQKEEEEVGFPVRPQVPLRPMTYKAALDLSHFLKEKGGLEGIIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRFPLTFGWCFKLVPVEPERVEEENKRENRCLLHPMSQHGMDDPEKEVLQWRFDSRLAFHHVARELHPEYYKN*NC*,ATGGGTGGTAAATGGTCAAAATGTAGTATAGTTGGATGGCCTACTGTAAGGGAAAGAATAAGACGAGCAGAGCCAGCAGCAGAAGGGGTGGGAGCAGTATCTCGAGACCTGGAAAAGCATGGAGCAATCACAAGTAGCAATGCTAACAATGCTGATTGTACCTGGCTGGAAGCCCAAAAAGAAGAGGAGGAGGTAGGCTTTCCAGTCAGGCCTCAGGTACCCTTAAGACCAATGACTTACAAGGCAGCCTTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGATAATTTACTCCCAAAAAAGACAAGATATTCTTGATCTGTGGGTCTACAACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGACTAGATTTCCACTGACCTTTGGATGGTGCTTCAAGCTAGTACCAGTTGAGCCAGAGAGGGTAGAAGAGGAGAATAAAAGAGAGAACCGCTGCTTGTTACACCCTATGAGCCAGCATGGGATGGATGACCCAGAGAAAGAAGTGCTACAGTGGAGGTTTGACAGCCGCCTAGCCTTTCACCACGTAGCCAGAGAGCTGCATCCGGAGTACTATAAGAACTAGAACTGCTGA -MK115571.1,gag,579,2079,789,2292,forward,0.2571999999999999,MGARASILSGGKLDSWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSVNVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE,MGARASILSGGKLDSWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSVNVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE*,ATGGGTGCGAGAGCGTCAATATTAAGCGGGGGAAAATTAGATTCATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATTTAGTATGGGCAAGCAGGGAGCTAGAACGATTTGCCGTTAACCCTGGCCTGTTAGAAACATCAGAGGGATGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATTTAATGCAGTAGCAGTCCTCTATTGTGTACATCAAAGGATACAGGTACAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGTAGCAGCAGCTGACACTGACACAGGAAACAGCAGCCAAAATTACCCCATAGTGCAGAACCTCCAGGGGCAAATGGTACATCAGCCCCTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAAAAGGCCTTCAGCCCAGAAGTCATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCTTGGGATTAAATAAAATAGTAAGGATGTATAGCCCTACCAGTATTCTGGATATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAGAACTTTAAGAGCTGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATTCGAATCCAGATTGTAAGACTATTTTAAAAGCATTAGGACCAGCAGCAACACTAGAGGAAATGATGACAGCATGTCAAGGAGTGGGGGGACCAGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAAATTCAGTTAATGTAATGATGCAAAGAGGCAATTTTAGAAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACATCAAATGAAAGACTGTACAGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAA -MK115571.1,pol,1871,4883,2084,5096,forward,0.14755732801595212,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEAFLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEAFLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAAATAGGGGGGCAATTTAAAGAAGCTTTCTTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACCCATAGAAATCTGTGGACACAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGCTTGGTTGTACCTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTCAATAAGAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAATTCCCTTAGATAAAGAATTCAGGAAGTATACTGCATTTACCATACCTAGTACAAATAATGAGACACCAGGGATTAGGTATGAGTACAATGTGCTGCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGCAAAATCCAGATATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAACTAAGACAACATCTGTTAAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAGTGGACAGTACAGCCTATAATACTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTACGCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAGGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTTTAAGAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGCAATGGACAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTACAAAAGATAGCCACAGAAAGCATAGTAATATGGGGAAAAACTCCTAAATTTAGACTACCTATACAAAAAGAAACATGGGAGACATGGTGGGCAGAGTACTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAATTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACTAAATTAGGCAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAGGTTATCTCCCTAACGGACACAACAAATCAAAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATCAGAAGTAAACATAGTAACAGACTCACAATATACATTAGGAATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAATCAGATAATAGAGCAGTTAATAAAAAAGGAAAAAGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGACAAACTAGTCAGTGCTGGAGTCAGGAGAGTACTATTTCTAGATGGAATAGATAAGGCCCAAGAAGACCATGAGAAATATCACAGTAATTGGAGAGCAATGGCTGGTGATTTTAATATACCCCCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCAAAAAGGAGAGGCCATGCATGGACAAGTAGATTGTAGTCCAGGAATATGGCAACTAGATTGTACACATCTAGAAGGGAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTCTCCTGAAACTAGCAGGGAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTAATGTGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCCATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTATAGTGCAGGGGAAAGAATAGTAGATATAATAGCAACAGACCTACAAACTAAAGAATTACAGAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGGAGAAAAGCAAAAATCATTAGGGATTATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG -MK115571.1,vif,4827,5406,5040,5619,forward,0.36979166666666674,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHRVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHRVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH*,ATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATGTTTCAAAGAAAACTAAAGGATGGTTTTATAGACATCACTATGAAAGCACTCATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTGGTAGTAACAACATATTGGGGCCTGAATACAGGAGAAAGAGAATGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGAAAAAGGAAATATAGCACACAAGTTGACCCTAACCTAGCAGACCAACTAATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACATAGAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGCTCTCTACAATACTTGGCACTAAAAGCATTAACAACACCAAAGAGAAGAAAGCCACCTTTACCTAGTGTTAGGAAACTGACAGAGGATAGATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAG -MK115571.1,vpr,5345,5639,5558,5850,forward,0.4038461538461544,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS*T,ATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAGAGCTTTTAGAGGAACTTAAGAATGAAGCGGTTAGACATTTTCCTAGGCCGTGGCTCCATGGCTTAGGACAACATATCTATGAAACTTATGGGGACACTTGGACAGGAGTGGAGGCCATAATAAGAACCCTGCAACAACTGCTGTTTATTCATTTCAGACTTGGGTGTCGACATAGCAGAATAGGCATTGTGCCACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACT -MK115571.1,tat_exon1,5616,5832,5830,6045,forward,0.29166666666666674,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ,ATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCACCCAGGAAGTCAGCCTAAAACTCCTTGTACTAACTGCTATTGCAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAAAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAG -MK115571.1,rev_exon1,5755,5833,5969,6045,forward,0.5769230769230769,MAGRSGDSDEELLKAVRLIKILYQSS,MAGRSGDSDEELLKAVRLIKILYQSS,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGT -MK115571.1,vpu,5847,6093,6061,6310,forward,0.6500000000000001,MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAEDSGNESEGDQEELSALMEMGHHAPGDVDDL,MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAEDSGNESEGDQEELSALMEMGHHAPGDVDDL*,ATGCAACCTCTGCACATAGCAGCAATAGTAGGATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGACCATAGTGTTAATAGAATATAGGAAAATATTAAGACAAAAAAGGATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAG -MK115571.1,env,6010,8551,6224,8795,forward,0.49065420560747675,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEVHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRDKMQKEYALFYKLDVVPIDDDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYGNKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSGTETFRPGGGNMKDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLDQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEVHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRDKMQKEYALFYKLDVVPIDDDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYGNKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSGTETFRPGGGNMKDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLDQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL*,ATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTGACAGTCTATTATGGGGTACCTGTATGGAAAGAAGCAAACACCACTCTATTTTGTGCATCGGATGCTAAAGCATATACCACAGAGGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGGATTGGAAAATGTGACAGAAAATTTTAACATGTGGAAAAATAACATGGTAGAACAGATGCATGAGGATGTAATCAATTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCACTAATCTGAATGTTACTAATACCAATAGCAGTAGTGAGGAGGGAAAGATGGCGGAAGAAATGAGAAACTGCTCTTTCAATATCACCACAAAAATAAGAGATAAGATGCAGAAAGAATATGCACTTTTTTATAAACTTGATGTAGTACCAATAGATGATGATAATACAAGTTATACATTGATAAATTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCTATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAGGATAAGAAGTTCAATGGATCAGGACCATGTAAAAATGTCAGCACAGTACAATGTACACATGGAATTAAGCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTTTAGCAGAAGAAGAGGTAGTAATTAGATCTGAAAATTTCACGAACAATGCTAAAACCATAATAGTACATCTGAAGGAACCTATACAAATTAATTGTACAAGACCCAACAACAATACAATGAAAAGTATCCCTCTAGGACCAGGAAGAGCATTCTATGCAACAGGAGCCATAATAGGAGATATAAGACAAGCACATTGTAACCTTAGTAGAAAAGCATGGAATAATACTTTAAAACAGGTAGTTGAAAAATTAAAAGAACAATATGGGAATAAAACAATAATCTTTAATCACTCCTCAGGAGGGGACCCAGAAATTATAATGCATACTTTTAATTGTGGAGGGGAATTTTTCTATTGTAATACAACACAGCTGTTTAATAGTACTTGGAATAGTACTTGGACTGGGAATGCTACCGAATTAGATGGAAACATCACACTCCCATGCAGAATAAAACAGATTATAAACAGGTGGCAAGAAGTAGGAAAAGCAATGTATGCCCCTCCCATTAGAGGAAAAATTAGATGTTCATCAAATATTACAGGGTTACTATTAGTAAGAGATGGTGGTAACACGAGCGGGACTGAGACCTTCAGACCTGGAGGAGGAAATATGAAGGACAATTGGAGGAGTGAATTATATAAATATAAAGTAGTAAAAATTGAGCCATTAGGAGTAGCACCCACCAGGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAAGCCAGGCTGTTATTGTCTGGTATAGTGCAACAGCAAAACAATTTGCTGAGAGCTATTGAGGCGCAACAACATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTACAGGATCAACAGCGCCTGGGAATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCCTGGAATGCTAGTTGGAGTAATAAATCTCTGGATCAGATTTGGGATAACATGACCTGGATGGAGTGGGAAAGAGAAATTAACAATTACACAGACACAATATACACCTTAATTGAAAAGGCGCAGAACCAGCAGGAAAAGAATGAACAAGAATTATTGGAATTGGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAAATGGCTGTGGTACATAAAATTATTCATAATGATAGTAGGAGGATTGATAGGTTTAAGAATAGTTTTTGCTGTACTTGCTATAGTAAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGTCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAGCTTATTTAATGTCACAGCCATCGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAAGAGCTTGTAGAGCTCTTCTCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCATTGTTATAA -MK115571.1,tat_exon2,8132,8228,8376,8469,forward,0.28666666666666596,RPTSQPRGDPTGPKESKKKVEKETETDQFD,RPTSQPRGDPTGPKESKKKVEKETETDQFD**,AGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGA -MK115571.1,rev_exon2,8133,8418,8377,8653,forward,0.4285714285714286,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVSLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVSLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE*CY*,GACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGTCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAG -MK115571.1,nef,8552,9173,8796,9417,forward,0.6162601626016186,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDNEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPTSLHGVEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDNEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPTSLHGVEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC*H*,ATGGGGGGCAAGTGGTCAAAAAGTAGTGGGGGTGGATGGCCTGCTGTAAGGGAAAGAATGAGACGAACTGAGCCAGCAGCAGAAGGGGTGGGAGCAGTATCTCGAGACCTGGAAAGACATGGAGCAGTCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGCGCCTGGCTGGAAGCACAAGAAGAGGACAATGAAGTGGGTTTTCCAGTCAGACCTCAGGTGCCTTTAAGACCAATGACTTTCAAAGGAGCTCTCGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCCCAAAAAAGACAAGATATCCTTGACCTGTGGGTCTACAACACACAAGGATACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGACCAGATATCCACTGACCTTTGGGTGGTGTTTCAAGCTAGTACCAGTGGAGCCAGAAGAGGCCAATCAAGGAGAGAACAACTGCTTGTTGCACCCTACGAGCCTGCATGGGGTGGAGGACCCGGAAAAAGAAGTATTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCACATGGCCCGAGAGAAGCATCCGGAGTACTACAAAGACTGCTGACATTGA -MK115514.1,gag,584,2090,789,2292,forward,0.2571999999999999,MGARASILSGGKLDEWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSVNVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE,MGARASILSGGKLDEWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSVNVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE*R*,ATGGGTGCGAGAGCGTCAATATTAAGCGGGGGAAAATTAGATGAATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATTTAGTATGGGCAAGCAGGGAGCTAGAACGATTTGCCGTTAACCCTGGCCTGTTAGAAACATCAGAGGGATGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATTTAATGCAGTAGCAGTCCTCTATTGTGTACATCAAAGGATACAGGTACAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGTAGCAGCAGCTGACACTGACACAGGAAACAGCAGCCAAAATTACCCCATAGTGCAGAACCTCCAGGGGCAAATGGTACATCAGCCCCTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAAAAGGCCTTCAGCCCAGAAGTCATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCTTGGGATTAAATAAAATAGTAAGGATGTATAGCCCTACCAGTATTCTGGATATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAGAACTTTAAGAGCTGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATTCGAATCCAGATTGTAAGACTATTTTAAAAGCATTAGGACCAGCAGCAACACTAGAGGAAATGATGACAGCATGTCAAGGAGTGGGGGGACCAGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAAATTCAGTTAATGTAATGATGCAAAGAGGCAATTTTAGAAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACATCAAATGAAAGACTGTACAGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAG -MK115514.1,pol,1876,4888,2084,5096,forward,0.14456630109670976,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAGGGGGGCAATTTAAAGAAGCTTTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGCTTTATCAAAGTAAGACAGTATGATCAGATACCCATAGAAATCTGTGGACACAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGCTTGGTTGTACCTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTCAATAAGAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAATTCCCTTAGATAAAGAATTCAGGAAGTATACTGCATTTACCATACCTAGTACAAATAATGAGACACCAGGGATTAGGTATGAGTACAATGTGCTGCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGCAAAATCCAGATATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAACTGAGACAACATCTGTTAAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAGTGGACAGTACAGCCTATAATACTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTACGCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAGGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTTTAAGAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGCAATGGACAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTACAAAAGATAGCCACAGAAAGCATAGTAATATGGGGAAAAACTCCTAAATTTAGACTACCTATACAAAAAGAAACATGGGAGACATGGTGGGCAGAATACTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAATTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACTAAATTAGGCAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAGGTTATCTCCCTAACGGACACAACAAATCAAAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATCAGAAGTAAACATAGTAACAGACTCACAATATACATTAGGAATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAATCAGATAATAGAGCAGTTAATAAAAAAGGAAAAAGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGACAAACTAGTCAGTGCTGGAGTCAGGAGAGTACTATTTCTAGATGGAATAGATAAGGCCCAAGAAGACCATGAGAAATATCACAGTAATTGGAGAGCAATGGCTGGTGATTTTAATATACCCCCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCAAAAAGGAGAGGCCATGCATGGACAAGTAGATTGTAGTCCAGGAATATGGCAACTAGATTGTACACATCTAGAAGGGAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTCTCCTGAAACTAGCAGGGAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTAATGTGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCCATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTATAGTGCAGGGGAAAGAATAGTAGATATAATAGCAACAGACCTACAAACTAAAGAATTACAGAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGGAGAAAAGCAAAAATCATTAGGGATTATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG -MK115514.1,vif,4832,5411,5040,5619,forward,0.36979166666666674,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGDIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGDIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH*,ATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATGTTTCAAAGAAAACTAAAGGATGGTTTTATAGACATCACTATGAAAGCACTCATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTGGTAGTAACAACATATTGGGGCCTGAATACAGGAGAAAGAGAATGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGAAAAAGGAAATATAGCACACAAGTTGACCCTAACCTAGCAGACCAACTAATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGAGATATAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGCTCTCTACAATACTTGGCACTAAAAGCATTAACAACACCAAAGAGAAGAAAGCCACCTTTACCTAGTGTTAGGAAACTGACAGAGGATAGATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAG -MK115514.1,vpr,5350,5644,5558,5850,forward,0.4038461538461544,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS*T,ATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAGAGCTTTTAGAGGAACTTAAGAATGAAGCGGTTAGACATTTTCCTAGGCCGTGGCTCCATGGCTTAGGACAACATATCTATGAAACTTATGGGGACACTTGGACAGGAGTGGAGGCCATAATAAGAACCCTGCAACAACTGCTGTTTATTCATTTCAGACTTGGGTGTCGACATAGCAGAATAGGCATTGTGCCACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACT -MK115514.1,tat_exon1,5621,5840,5830,6045,forward,0.29166666666666674,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ*,ATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCACCCAGGAAGTCAGCCTAAAACTCCTTGTACTAACTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAAAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGTAA -MK115514.1,rev_exon1,5760,5838,5969,6045,forward,0.5769230769230769,MAGRSGDSDEELLKAVRLIKILYQSS,MAGRSGDSDEELLKAVRLIKILYQSS,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGT -MK115514.1,vpu,5852,6098,6061,6310,forward,0.6500000000000001,MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAEDSGNESEGDQEELSALMEMGHHAPGDVDDL,MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAEDSGNESEGDQEELSALMEMGHHAPGDVDDL*,ATGCAACCTCTGCACATAGCAGCAATAGTAGGATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGACCATAGTGTTAATAGAATATAGGAAAATATTAAGACAAAAAAGGATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAG -MK115514.1,env,6015,8556,6224,8795,forward,0.4941588785046729,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEVHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNITNTNSSSKEGKMAEEMRNCSFNITTEIRNKMQKEYALFYKLDVVPIDDDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYGNKTIVFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSGTETFRPGGGDMKDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEVHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNITNTNSSSKEGKMAEEMRNCSFNITTEIRNKMQKEYALFYKLDVVPIDDDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYGNKTIVFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSGTETFRPGGGDMKDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL*,ATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTGACAGTCTATTATGGGGTACCTGTATGGAAAGAAGCAAACACCACTCTATTTTGTGCATCGGATGCTAAAGCATATACCACAGAGGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGGATTGGAAAATGTGACAGAAAATTTTAACATGTGGAAAAATAACATGGTAGAACAGATGCATGAGGATGTAATCAATTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCACTAATCTGAATATTACTAATACCAATAGCAGTAGTAAGGAGGGAAAGATGGCGGAAGAAATGAGAAACTGCTCTTTCAATATCACCACAGAAATAAGAAATAAGATGCAGAAGGAATATGCACTTTTTTATAAACTTGATGTAGTACCAATAGATGATGATAATACAAGTTATACATTGATAAATTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCTATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAGGATAAGAAGTTCAATGGATCAGGACCATGTAAAAGTGTCAGCACAGTACAATGTACACATGGAATTAAGCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTTTAGCAGAAGAAGAGGTAGTAATTAGATCTGAAAATTTCACGAACAATGCTAAAACCATAATAGTACATCTGAAGGAACCTATACAAATTAATTGTACAAGACCCAACAACAATACAATGAAAAGTATCCCTCTAGGACCAGGAAGAGCATTCTATGCAACAGGAGCCATAATAGGAGATATAAGACAAGCACATTGTAACCTTAGTAGAAAAGCATGGAATAATACTTTAAAACAGGTAGTTGAAAAATTAAAAGAACAATATGGGAATAAAACAATAGTCTTTAATCACTCCTCAGGAGGGGACCCAGAAATTATAATGCATACTTTTAATTGTGGAGGGGAATTTTTCTATTGTAATACAACACAGCTGTTTAATAGTACTTGGAATAGTACTTGGACTGGGAATGCTACCGAATTAGATGGAAACATCACACTCCCATGCAGAATAAAACAGATTATAAACAGGTGGCAAGAAGTAGGAAAAGCAATGTATGCCCCTCCCATTAGAGGAAAAATTAGATGTTCATCAAATATTACAGGGTTACTATTAGTAAGAGATGGTGGTAACACGAGCGGGACTGAGACCTTCAGACCTGGAGGAGGAGATATGAAGGACAATTGGAGGAGTGAATTATATAAATATAAAGTAGTAAAAATTGAGCCATTAGGAGTAGCACCCACCAGGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAAGCCAGGCTGTTATTGTCTGGTATAGTGCAACAGCAAAACAATTTGCTAAGAGCTATTGAGGCGCAACAACATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTACAGGATCAACAGCGCCTGGGAATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCCTGGAATGCTAGTTGGAGTAATAAATCTCTGAATCAGATTTGGGATAACATGACCTGGATGGAGTGGGAAAGAGAAATTAACAATTACACAGACACAATATACACCTTAATTGAAAAGGCGCAGAACCAGCAGGAAAAGAATGAACAAGAATTATTGGAATTGGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAAATGGCTGTGGTACATAAAATTATTCATAATGATAGTAGGAGGATTGATAGGTTTAAGAATAGTTTTTGCTGTACTTGCTATAGTAAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGTCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAGCTTATTCAATGTCACAGCCATCGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAAGAGCTTGTAGAGCTCTTCTCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCATTGTTATAA -MK115514.1,tat_exon2,8137,8233,8376,8469,forward,0.28666666666666596,RPTSQPRGDPTGPKESKKKVEKETETDQFD,RPTSQPRGDPTGPKESKKKVEKETETDQFD**,AGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGA -MK115514.1,rev_exon2,8138,8423,8377,8653,forward,0.4285714285714286,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVSLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVSLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE*CY*,GACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGTCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAG -MK115514.1,nef,8557,9178,8796,9417,forward,0.6162601626016186,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDGEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPTSLHGVEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDGEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPTSLHGVEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC*H*,ATGGGGGGCAAGTGGTCAAAAAGTAGTGGGGGTGGATGGCCTGCTGTAAGGGAAAGAATGAGACGAACTGAGCCAGCAGCAGAAGGGGTGGGAGCAGTATCTCGAGACCTGGAAAGACATGGAGCAGTCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGCGCCTGGCTGGAAGCACAAGAAGAGGACGGTGAAGTGGGTTTTCCAGTCAGACCTCAGGTGCCTTTAAGACCAATGACTTTCAAAGGAGCTCTCGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCCCAAAAAAGACAAGATATCCTTGACCTGTGGGTCTACAACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGACCAGATATCCACTGACCTTTGGGTGGTGTTTCAAGCTAGTACCAGTGGAGCCAGAAGAGGCCAATCAAGGAGAGAACAACTGCTTGTTACACCCTACGAGCCTGCATGGGGTGGAGGACCCGGAAAAAGAAGTATTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCACATGGCCCGAGAGAAGCATCCGGAGTACTACAAAGACTGCTGACATTGA -MK115488.1,gag,707,2213,789,2292,forward,0.2571999999999999,MGARASILSGGKLDEWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSVNVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE,MGARASILSGGKLDEWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSVNVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE*R*,ATGGGTGCGAGAGCGTCAATATTAAGCGGGGGAAAATTAGATGAATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATTTAGTATGGGCAAGCAGGGAGCTAGAACGATTTGCCGTTAACCCTGGCCTGTTAGAAACATCAGAGGGATGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATTTAATGCAGTAGCAGTCCTCTATTGTGTACATCAAAGGATACAGGTACAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGTAGCAGCAGCTGACACTGACACAGGAAACAGCAGCCAAAATTACCCCATAGTGCAGAACCTCCAGGGGCAAATGGTACATCAGCCCCTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAAAAGGCCTTCAGCCCAGAAGTCATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCTTGGGATTAAATAAAATAGTAAGGATGTATAGCCCTACCAGTATTCTGGATATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAGAACTTTAAGAGCTGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATTCGAATCCAGATTGTAAGACTATTTTAAAAGCATTAGGACCAGCAGCAACACTAGAGGAAATGATGACAGCATGTCAAGGAGTGGGGGGACCAGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAAATTCAGTTAATGTAATGATGCAAAGAGGCAATTTTAGAAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACATCAAATGAAAGACTGTACAGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAG -MK115488.1,pol,1999,5011,2084,5096,forward,0.14456630109670976,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAGGGGGGCAATTTAAAGAAGCTTTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGCTTTATCAAAGTAAGACAGTATGATCAGATACCCATAGAAATCTGTGGACACAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGCTTGGTTGTACCTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTCAATAAGAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAATTCCCTTAGATAAAGAATTCAGGAAGTATACTGCATTTACCATACCTAGTACAAATAATGAGACACCAGGGATTAGGTATGAGTACAATGTGCTGCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGCAAAATCCAGATATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAACTGAGACAACATCTGTTAAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAGTGGACAGTACAGCCTATAATACTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTACGCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAGGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTTTAAGAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGCAATGGACAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTACAAAAGATAGCCACAGAAAGCATAGTAATATGGGGAAAAACTCCTAAATTTAGACTACCTATACAAAAAGAAACATGGGAGACATGGTGGGCAGAATACTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAATTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACTAAATTAGGCAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAGGTTATCTCCCTAACGGACACAACAAATCAAAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATCAGAAGTAAACATAGTAACAGACTCACAATATACATTAGGAATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAATCAGATAATAGAGCAGTTAATAAAAAAGGAAAAAGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGACAAACTAGTCAGTGCTGGAGTCAGGAGAGTACTATTTCTAGATGGAATAGATAAGGCCCAAGAAGACCATGAGAAATATCACAGTAATTGGAGAGCAATGGCTGGTGATTTTAATATACCCCCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCAAAAAGGAGAGGCCATGCATGGACAAGTAGATTGTAGTCCAGGAATATGGCAACTAGATTGTACACATCTAGAAGGGAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTCTCCTGAAACTAGCAGGGAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTAATGTGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCCATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTATAGTGCAGGGGAAAGAATAGTAGATATAATAGCAACAGACCTACAAACTAAAGAATTACAGAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGGAGAAAAGCAAAAATCATTAGGGATTATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG -MK115488.1,vif,4955,5534,5040,5619,forward,0.36979166666666674,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGDIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGDIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH*,ATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATGTTTCAAAGAAAACTAAAGGATGGTTTTATAGACATCACTATGAAAGCACTCATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTGGTAGTAACAACATATTGGGGCCTGAATACAGGAGAAAGAGAATGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGAAAAAGGAAATATAGCACACAAGTTGACCCTAACCTAGCAGACCAACTAATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGAGATATAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGCTCTCTACAATACTTGGCACTAAAAGCATTAACAACACCAAAGAGAAGAAAGCCACCTTTACCTAGTGTTAGGAAACTGACAGAGGATAGATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAG -MK115488.1,vpr,5473,5767,5558,5850,forward,0.4038461538461544,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS*T,ATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAGAGCTTTTAGAGGAACTTAAGAATGAAGCGGTTAGACATTTTCCTAGGCCGTGGCTCCATGGCTTAGGACAACATATCTATGAAACTTATGGGGACACTTGGACAGGAGTGGAGGCCATAATAAGAACCCTGCAACAACTGCTGTTTATTCATTTCAGACTTGGGTGTCGACATAGCAGAATAGGCATTGTGCCACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACT -MK115488.1,tat_exon1,5744,5963,5830,6045,forward,0.29166666666666674,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ*,ATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCACCCAGGAAGTCAGCCTAAAACTCCTTGTACTAACTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAAAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGTAA -MK115488.1,rev_exon1,5883,5961,5969,6045,forward,0.5769230769230769,MAGRSGDSDEELLKAVRLIKILYQSS,MAGRSGDSDEELLKAVRLIKILYQSS,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGT -MK115488.1,vpu,5975,6221,6061,6310,forward,0.6500000000000001,MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAEDSGNESEGDQEELSALMEMGHHAPGDVDDL,MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAEDSGNESEGDQEELSALMEMGHHAPGDVDDL*,ATGCAACCTCTGCACATAGCAGCAATAGTAGGATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGACCATAGTGTTAATAGAATATAGGAAAATATTAAGACAAAAAAGGATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAG -MK115488.1,env,6138,8679,6224,8795,forward,0.4941588785046729,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEVHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNITNTNSSSKEGKMAEEMRNCSFNITTEIRNKMQKEYALFYKLDVVPIDDDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYGNKTIVFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSGTETFRPGGGDMKDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEVHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNITNTNSSSKEGKMAEEMRNCSFNITTEIRNKMQKEYALFYKLDVVPIDDDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYGNKTIVFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSGTETFRPGGGDMKDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL*,ATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTGACAGTCTATTATGGGGTACCTGTATGGAAAGAAGCAAACACCACTCTATTTTGTGCATCGGATGCTAAAGCATATACCACAGAGGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGGATTGGAAAATGTGACAGAAAATTTTAACATGTGGAAAAATAACATGGTAGAACAGATGCATGAGGATGTAATCAATTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCACTAATCTGAATATTACTAATACCAATAGCAGTAGTAAGGAGGGAAAGATGGCGGAAGAAATGAGAAACTGCTCTTTCAATATCACCACAGAAATAAGAAATAAGATGCAGAAGGAATATGCACTTTTTTATAAACTTGATGTAGTACCAATAGATGATGATAATACAAGTTATACATTGATAAATTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCTATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAGGATAAGAAGTTCAATGGATCAGGACCATGTAAAAGTGTCAGCACAGTACAATGTACACATGGAATTAAGCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTTTAGCAGAAGAAGAGGTAGTAATTAGATCTGAAAATTTCACGAACAATGCTAAAACCATAATAGTACATCTGAAGGAACCTATACAAATTAATTGTACAAGACCCAACAACAATACAATGAAAAGTATCCCTCTAGGACCAGGAAGAGCATTCTATGCAACAGGAGCCATAATAGGAGATATAAGACAAGCACATTGTAACCTTAGTAGAAAAGCATGGAATAATACTTTAAAACAGGTAGTTGAAAAATTAAAAGAACAATATGGGAATAAAACAATAGTCTTTAATCACTCCTCAGGAGGGGACCCAGAAATTATAATGCATACTTTTAATTGTGGAGGGGAATTTTTCTATTGTAATACAACACAGCTGTTTAATAGTACTTGGAATAGTACTTGGACTGGGAATGCTACCGAATTAGATGGAAACATCACACTCCCATGCAGAATAAAACAGATTATAAACAGGTGGCAAGAAGTAGGAAAAGCAATGTATGCCCCTCCCATTAGAGGAAAAATTAGATGTTCATCAAATATTACAGGGTTACTATTAGTAAGAGATGGTGGTAACACGAGCGGGACTGAGACCTTCAGACCTGGAGGAGGAGATATGAAGGACAATTGGAGGAGTGAATTATATAAATATAAAGTAGTAAAAATTGAGCCATTAGGAGTAGCACCCACCAGGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAAGCCAGGCTGTTATTGTCTGGTATAGTGCAACAGCAAAACAATTTGCTAAGAGCTATTGAGGCGCAACAACATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTACAGGATCAACAGCGCCTGGGAATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCCTGGAATGCTAGTTGGAGTAATAAATCTCTGAATCAGATTTGGGATAACATGACCTGGATGGAGTGGGAAAGAGAAATTAACAATTACACAGACACAATATACACCTTAATTGAAAAGGCGCAGAACCAGCAGGAAAAGAATGAACAAGAATTATTGGAATTGGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAAATGGCTGTGGTACATAAAATTATTCATAATGATAGTAGGAGGATTGATAGGTTTAAGAATAGTTTTTGCTGTACTTGCTATAGTAAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGTCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAGCTTATTCAATGTCACAGCCATCGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAAGAGCTTGTAGAGCTCTTCTCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCATTGTTATAA -MK115488.1,tat_exon2,8260,8356,8376,8469,forward,0.28666666666666596,RPTSQPRGDPTGPKESKKKVEKETETDQFD,RPTSQPRGDPTGPKESKKKVEKETETDQFD**,AGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGA -MK115488.1,rev_exon2,8261,8546,8377,8653,forward,0.4285714285714286,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVSLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVSLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE*CY*,GACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGTCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAG -MK115488.1,nef,8680,9301,8796,9417,forward,0.6162601626016186,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDGEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPTSLHGVEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDGEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPTSLHGVEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC*H*,ATGGGGGGCAAGTGGTCAAAAAGTAGTGGGGGTGGATGGCCTGCTGTAAGGGAAAGAATGAGACGAACTGAGCCAGCAGCAGAAGGGGTGGGAGCAGTATCTCGAGACCTGGAAAGACATGGAGCAGTCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGCGCCTGGCTGGAAGCACAAGAAGAGGACGGTGAAGTGGGTTTTCCAGTCAGACCTCAGGTGCCTTTAAGACCAATGACTTTCAAAGGAGCTCTCGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCCCAAAAAAGACAAGATATCCTTGACCTGTGGGTCTACAACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGACCAGATATCCACTGACCTTTGGGTGGTGTTTCAAGCTAGTACCAGTGGAGCCAGAAGAGGCCAATCAAGGAGAGAACAACTGCTTGTTACACCCTACGAGCCTGCATGGGGTGGAGGACCCGGAAAAAGAAGTATTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCACATGGCCCGAGAGAAGCATCCGGAGTACTACAAAGACTGCTGACATTGA -MK115030.1,gag,176,1685,789,2292,forward,0.22580000000000022,MGARASVLSGGELDRWEKIYLRPGGKKKYRLKHIVWASRELERFAVNPGLLESSEGCRQILGQLQPALQTGSEELRSLYNTVAVLYCVHQRINVKDTKEALDKIEEEQNKSKKKAQQAAADTGNSSNSQVSQNYPIVQNLQGQMVHQPISPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINDEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHTPPIPVGEIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFYKTLRAEQASQDVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTKSASIMVQGGNFRNQRKNVKCFNCGKEGHIARNCRAPRKKGCWKCGREGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPAESFRFGEEATAPPQKQETKDQELYPLASLRSLFGNDP,MGARASVLSGGELDRWEKIYLRPGGKKKYRLKHIVWASRELERFAVNPGLLESSEGCRQILGQLQPALQTGSEELRSLYNTVAVLYCVHQRINVKDTKEALDKIEEEQNKSKKKAQQAAADTGNSSNSQVSQNYPIVQNLQGQMVHQPISPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINDEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHTPPIPVGEIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFYKTLRAEQASQDVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTKSASIMVQGGNFRNQRKNVKCFNCGKEGHIARNCRAPRKKGCWKCGREGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPAESFRFGEEATAPPQKQETKDQELYPLASLRSLFGNDP*YQ*,ATGGGTGCGAGAGCGTCAGTATTAAGCGGCGGAGAATTAGATAGATGGGAAAAAATTTACCTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTCAACCCTGGCCTGTTAGAGTCATCAGAAGGCTGCAGGCAAATTCTGGGACAGCTACAACCAGCCCTTCAGACAGGATCAGAAGAACTTAGATCATTATATAATACAGTAGCAGTCCTCTATTGTGTACATCAAAGGATAAATGTAAAAGACACCAAGGAAGCTCTAGACAAAATAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAACAAGCAGCAGCTGACACAGGAAACAGCAGCAACAGCCAGGTCAGCCAAAATTACCCTATAGTGCAGAACCTACAGGGGCAAATGGTACATCAACCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAATAGAAGAAAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCACTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAGATGTTAAAAGAAACCATCAATGATGAGGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGCCCTATTGCACCAGGCCAGATGAGGGAACCAAGGGGAAGTGACATAGCAGGAACCACTAGTACCCTTCAGGAACAAATAGGATGGATGACACATACTCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCCTGGGGTTAAATAAAATAGTAAGAATGTATAGCCCTGTCAGCATTTTGGACATAAGACAAGGACCAAAGGAACCCTTTAGGGATTATGTAGACCGGTTCTATAAAACTCTAAGGGCTGAGCAAGCGTCACAGGATGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAATCCAGATTGTAAGACCATTTTAAAAGCATTAGGACCAGCAGCTACATTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGGGGACCCGGCCACAAGGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAACAAAATCAGCCTCCATAATGGTGCAGGGAGGCAATTTTAGGAACCAAAGAAAGAATGTTAAGTGTTTCAATTGTGGCAAAGAAGGACACATAGCCAGAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAGGGAAGGACACCAAATGAAAGATTGTACTGAGAGACAGGCTAATTTTTTAGGGAAGATTTGGCCTTCCCACAAGGGGAGGCCAGGGAATTTTCTCCAGAGCAGACCAGAGCCAACAGCCCCGCCAGCAGAGAGCTTCAGGTTTGGGGAAGAGGCAACAGCTCCCCCTCAGAAGCAGGAGACGAAGGACCAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCATAATATCAATAA -MK115030.1,pol,1477,4567,2084,5096,forward,0.21934197407776668,FFREDLAFPQGEAREFSPEQTRANSPASRELQVWGRGNSSPSEAGDEGPGTVSFSFPQITLWQRPIISIKIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYDQVPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPRVKQWPLTEEKIKALIEICAEMEKEGKITKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKRKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNEAPGVRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKENPDIVIYQYMDDLYVGSDLEIEQHRTKIEELRQHLLGWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPDKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTEVVPLTEEAELELAENREILKEPVHGAYYDPSKDLIAEVQKQGGDQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKIALEAIVIWGKTPKFKLPIQKETWEMWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIIGAETFYVDGAANRETKLGKAGYVTDRGRQKVVSLMDTTNQRTELHAIHLALQDSGSTVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHKGIGGNEQVDKLVSNGIRKILFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEPMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIAAETGQETAYFILKLAGRWPVKIIHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDSREPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKILRDYGKQMAGDDCVASRQDED,FFREDLAFPQGEAREFSPEQTRANSPASRELQVWGRGNSSPSEAGDEGPGTVSFSFPQITLWQRPIISIKIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYDQVPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPRVKQWPLTEEKIKALIEICAEMEKEGKITKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKRKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNEAPGVRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKENPDIVIYQYMDDLYVGSDLEIEQHRTKIEELRQHLLGWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPDKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTEVVPLTEEAELELAENREILKEPVHGAYYDPSKDLIAEVQKQGGDQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKIALEAIVIWGKTPKFKLPIQKETWEMWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIIGAETFYVDGAANRETKLGKAGYVTDRGRQKVVSLMDTTNQRTELHAIHLALQDSGSTVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHKGIGGNEQVDKLVSNGIRKILFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEPMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIAAETGQETAYFILKLAGRWPVKIIHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDSREPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKILRDYGKQMAGDDCVASRQDED*NMEQFSKTPYAYFKESSEMGLQTSL*,TTTTTTAGGGAAGATTTGGCCTTCCCACAAGGGGAGGCCAGGGAATTTTCTCCAGAGCAGACCAGAGCCAACAGCCCCGCCAGCAGAGAGCTTCAGGTTTGGGGAAGAGGCAACAGCTCCCCCTCAGAAGCAGGAGACGAAGGACCAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCATAATATCAATAAAAATAGGAGGGCAACTAAAAGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAATTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGGTACCCATAGAAATTTGTGGACATAAAGCTATAGGTACAGTATTAATAGGACCTACACCAGTCAACATAATTGGAAGAAATCTGTTGACCCAGCTTGGTTGCACTTTAAATTTTCCCATCAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAGAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAGGCATTAATAGAAATTTGTGCAGAAATGGAAAAGGAAGGGAAAATTACAAAAATTGGGCCTGAGAATCCATATAATACTCCAGTGTTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCCGAGAACTTAATAAGAGAACACAAGACTTCTGGGAAGTTCAACTAGGAATACCACATCCCGCAGGGTTAAAAAGGAAAAAATCAGTAACAGTACTAGATGTGGGTGATGCATATTTTTCAGTTCCTTTAGACAAAGACTTCAGAAAGTATACTGCATTTACCATACCCAGTATAAACAATGAGGCACCAGGAGTTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGGAAAATCCAGACATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGAGCAGCACAGAACAAAAATAGAGGAACTGAGACAACATCTGTTGGGGTGGGGACTCACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTTCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATACAGCTGCCAGACAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAGTTGAATTGGGCAAGCCAGATCTATCCAGGGATTAAAGTAAAGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAAGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAGATTCTAAAAGAACCAGTACATGGAGCATATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGGGGAGACCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGGAAATATGCAAGAACGAGGGGTGCCCACACTAATGATGTAAAACAGTTAACAGAGGCAGTGCAAAAAATAGCCCTAGAAGCCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTACCTATACAAAAGGAAACATGGGAAATGTGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAATTTGTCAATACCCCTCCCTTAGTAAAATTATGGTACCAGTTAGAGAAAGAACCCATAATAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAGACTAAATTAGGAAAAGCAGGGTATGTTACGGACAGAGGAAGACAAAAGGTTGTCTCCCTAATGGACACAACAAATCAGAGGACTGAGTTACACGCAATTCATCTAGCTTTGCAGGATTCAGGATCAACAGTAAACATAGTGACAGACTCACAATATGCCTTAGGGATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAGTCAAATAATAGAGCAGCTAATAAAAAAGGAAAAGATTTACCTGGCATGGGTCCCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTAATGGAATCAGAAAAATACTATTTCTGGATGGAATAGATAAGGCCCAAGAAGAACATGAAAAATATCACAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAGTGTCAGTTAAAAGGAGAACCTATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAACTGGATTGTACACATTTAGAAGGAAAAATTATCCTGGTAGCAGTTCATGTAGCCAGTGGATACATAGAAGCAGAAGTTATTGCAGCAGAAACAGGGCAGGAAACAGCATACTTTATCTTAAAATTGGCAGGAAGATGGCCAGTAAAAATAATACATACAGACAATGGCAGCAATTTCACCAGCACTACGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGTATTCCCTACAATCCTCAAAGTCAAGGAGTAGTAGAATCTATGAATAATGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAATAGACATAATAGCAACAGACATACAAACTAAAGAACTACAAAAACAAATTTCAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGAACCACTTTGGAAAGGACCAGCAAAGCTCCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATCCTTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATATTTCAAAGAAAGCTCAGAGATGGGTTTACAGACATCACTATGA -MK115030.1,vif,4433,5012,5040,5619,forward,0.38020833333333326,MENRWQVMIVWQVDRMRIRTWNSLVKHHMHISKKAQRWVYRHHYESHNPKTSSEVHIPLGEARLVIKTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPGLADQLIHLYYFDCFSESAIRNAILGHRVSPRCEYQAGHNKVGSLQYLALTALITPKRRKPPLPSVTKLTEDRWNKSQRTKGHKGSHTMNGH,MENRWQVMIVWQVDRMRIRTWNSLVKHHMHISKKAQRWVYRHHYESHNPKTSSEVHIPLGEARLVIKTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPGLADQLIHLYYFDCFSESAIRNAILGHRVSPRCEYQAGHNKVGSLQYLALTALITPKRRKPPLPSVTKLTEDRWNKSQRTKGHKGSHTMNGH*,ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATATTTCAAAGAAAGCTCAGAGATGGGTTTACAGACATCACTATGAAAGCCATAATCCAAAAACAAGTTCAGAAGTACACATCCCATTAGGGGAAGCAAGATTGGTAATAAAAACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCATTTGGGCCAGGGAGTATCCATAGAATGGAGGAAAAGGAGATATAGCACACAAGTAGACCCTGGCCTGGCAGACCAACTAATTCACCTGTATTATTTTGATTGTTTTTCAGAATCTGCTATAAGGAATGCCATATTAGGACATAGAGTTAGTCCTAGGTGTGAATATCAGGCAGGACATAACAAGGTAGGATCCCTACAATACTTGGCATTAACAGCATTAATAACACCAAAAAGGAGAAAGCCACCTTTGCCCAGTGTTACAAAATTAACAGAGGACAGATGGAACAAGTCCCAGAGGACCAAGGGCCACAAAGGGAGCCATACAATGAATGGACATTAG -MK115030.1,vpr,4951,5245,5558,5850,forward,0.5192307692307698,MEQVPEDQGPQREPYNEWTLELLEELKSEAVRHFPRPWLHSLGQYIYETYGDTWAGVEDIIRTLQQLLFIHFRIGCQHSRIGIIRQRRARNGASRS,MEQVPEDQGPQREPYNEWTLELLEELKSEAVRHFPRPWLHSLGQYIYETYGDTWAGVEDIIRTLQQLLFIHFRIGCQHSRIGIIRQRRARNGASRS*L,ATGGAACAAGTCCCAGAGGACCAAGGGCCACAAAGGGAGCCATACAATGAATGGACATTAGAGCTCTTAGAAGAGCTTAAGAGTGAAGCTGTTAGGCATTTTCCTAGACCATGGCTTCATAGCTTAGGACAATATATCTATGAAACTTATGGAGATACTTGGGCAGGGGTGGAAGACATAATAAGAACCCTGCAACAACTGTTGTTCATTCATTTCAGAATTGGGTGTCAACATAGCAGGATAGGAATTATTCGACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGCTT -MK115030.1,tat_exon1,5222,5441,5830,6045,forward,0.5972222222222223,MEPVDPSLEPWKHPGSQPMTACNNCYCKRCCFHCQVCFTRKGLGISYGRKKRRQRRRASHSSQNHQAALPEQ,MEPVDPSLEPWKHPGSQPMTACNNCYCKRCCFHCQVCFTRKGLGISYGRKKRRQRRRASHSSQNHQAALPEQ*,ATGGAGCCAGTAGATCCTAGCTTAGAGCCCTGGAAACATCCAGGAAGTCAACCTATGACTGCTTGTAACAATTGCTATTGTAAACGGTGTTGCTTTCATTGCCAAGTTTGCTTCACAAGAAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTTCTCACAGCAGTCAGAATCATCAAGCGGCTCTACCAGAGCAGTAA -MK115030.1,rev_exon1,5361,5439,5969,6045,forward,0.6538461538461537,MAGRSGDSDEELLTAVRIIKRLYQSS,MAGRSGDSDEELLTAVRIIKRLYQSS,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTTCTCACAGCAGTCAGAATCATCAAGCGGCTCTACCAGAGCAGT -MK115030.1,vpu,5453,5699,6061,6310,forward,0.780487804878049,MHILEIAAIVGLVVAAIIAIVVWSIVLIEYRKILRQRKIDRLIDRIRERAEDSGNESDGDQEELSAIVEMGHLVPWDGDDM,MHILEIAAIVGLVVAAIIAIVVWSIVLIEYRKILRQRKIDRLIDRIRERAEDSGNESDGDQEELSAIVEMGHLVPWDGDDM*,ATGCATATCTTAGAAATAGCAGCAATAGTAGGATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGTCTATAGTATTAATAGAATATAGGAAAATTTTAAGACAAAGGAAAATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAAAGTGACGGGGACCAGGAGGAATTATCAGCAATTGTGGAGATGGGGCATCTTGTTCCTTGGGATGGTGATGATATGTAG -MK115030.1,env,5616,8217,6224,8795,forward,0.5768691588785053,MKVTGTRRNYQQLWRWGILFLGMVMICSARNLWVTVYYGVPVWKEATTTLFCASDAKAYETEKHNVWATHACVPTDPSPQEVALENVTETFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDNLNLNRPNNNTCSNNTNYNITEKGEIKNCSFNVTTGIRDRVTKEHALFYKLDVVPIDEGSGNTTGKYRMINCNTSVITQACPKVSFEPIPIHFCAPAGFAILKCKDKKFNGTGECRNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVIRSANLSNNAKTIIVQLNKSVKINCTRPNNNTRRSIHIGPGRAFYGTDIIGDIRQAHCNISGKDWNDTLKQIVIKLKEKFENKTIVFTQSSGGDPEIVMHSFNCGGEFFYCNTTQLFNSTWNNNTWNGTDNWNGTESNSTITLPCRIKQIINLWQEVGRAMYAPPIQGQIRCSSNITGLLLVRDGGSNNSSNDTETFRPGGGDMRDNWRSELYKYKVVKIEPLGIAPTHAKRRVVQREKRAMGLGAFFLGFLGAAGSTMGAASVTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLALERYLKDQQLLGIWGCSGKLICTTNVPWNISWNPRWNRSLDEIWTNMTWKQWEKEIDNYTDIIYNLIEQSQNQQEQNEQDLLALDKWASLWNWFDITQWLWYIKIFIMIVGGLIGLRIVFTILSIVNRVRQGYSPLSLQTLLPTQRGPDRPEGTEEGGGERDRGTSTRLVHGFLALIWDDLRSLFLFSYHRLRDLLLIAARIVELLGRRGWEALKYWWNLLQYWSQEIKNSAVSLLNTTAIAVAEGTDRIIEVLQRGFRAILHIPTRIRQGLERALL,MKVTGTRRNYQQLWRWGILFLGMVMICSARNLWVTVYYGVPVWKEATTTLFCASDAKAYETEKHNVWATHACVPTDPSPQEVALENVTETFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDNLNLNRPNNNTCSNNTNYNITEKGEIKNCSFNVTTGIRDRVTKEHALFYKLDVVPIDEGSGNTTGKYRMINCNTSVITQACPKVSFEPIPIHFCAPAGFAILKCKDKKFNGTGECRNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVIRSANLSNNAKTIIVQLNKSVKINCTRPNNNTRRSIHIGPGRAFYGTDIIGDIRQAHCNISGKDWNDTLKQIVIKLKEKFENKTIVFTQSSGGDPEIVMHSFNCGGEFFYCNTTQLFNSTWNNNTWNGTDNWNGTESNSTITLPCRIKQIINLWQEVGRAMYAPPIQGQIRCSSNITGLLLVRDGGSNNSSNDTETFRPGGGDMRDNWRSELYKYKVVKIEPLGIAPTHAKRRVVQREKRAMGLGAFFLGFLGAAGSTMGAASVTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLALERYLKDQQLLGIWGCSGKLICTTNVPWNISWNPRWNRSLDEIWTNMTWKQWEKEIDNYTDIIYNLIEQSQNQQEQNEQDLLALDKWASLWNWFDITQWLWYIKIFIMIVGGLIGLRIVFTILSIVNRVRQGYSPLSLQTLLPTQRGPDRPEGTEEGGGERDRGTSTRLVHGFLALIWDDLRSLFLFSYHRLRDLLLIAARIVELLGRRGWEALKYWWNLLQYWSQEIKNSAVSLLNTTAIAVAEGTDRIIEVLQRGFRAILHIPTRIRQGLERALL*,ATGAAAGTGACGGGGACCAGGAGGAATTATCAGCAATTGTGGAGATGGGGCATCTTGTTCCTTGGGATGGTGATGATATGTAGTGCCAGAAACTTGTGGGTCACAGTCTATTATGGGGTACCTGTATGGAAAGAAGCAACTACCACTCTATTTTGTGCATCAGATGCTAAAGCATATGAGACAGAGAAGCATAATGTTTGGGCAACCCATGCCTGTGTACCCACAGACCCCAGCCCACAGGAAGTAGCATTGGAAAATGTGACAGAAACATTTAACATGTGGAAAAATGACATGGTAGAGCAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGCCTAAAGCCATGTGTGAAACTAACCCCACTCTGTGTTACTTTAAATTGCACTGATAATTTAAATCTAAATCGCCCTAACAATAATACTTGTAGTAATAATACTAATTATAATATAACGGAAAAAGGAGAAATAAAAAACTGCTCTTTCAATGTCACCACAGGAATAAGAGATAGGGTGACAAAAGAACATGCACTTTTCTATAAACTTGATGTAGTACCAATAGATGAAGGTAGTGGAAATACTACGGGCAAATATAGGATGATAAATTGTAACACCTCAGTCATTACACAAGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTTTTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAAGATAAGAAATTCAATGGAACAGGAGAATGTAGAAATGTCAGCACAGTACAATGTACACATGGAATTAGGCCAGTAGTATCAACTCAACTGCTGCTGAACGGCAGTCTAGCAGAAGAAGAGATAGTAATTAGATCTGCCAATCTCTCGAACAATGCTAAAACCATAATAGTACAGCTGAATAAATCTGTAAAAATTAATTGTACAAGACCCAACAATAATACAAGAAGAAGTATACACATAGGACCAGGGAGGGCATTTTATGGAACAGACATAATAGGGGATATAAGACAAGCGCATTGTAACATTAGTGGGAAAGATTGGAATGACACTTTAAAACAGATAGTTATAAAATTAAAAGAAAAATTTGAGAATAAAACAATAGTCTTTACTCAATCCTCAGGAGGGGACCCAGAGATAGTGATGCATAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAATACAACACAGCTGTTTAATAGTACTTGGAATAATAATACTTGGAATGGTACTGATAATTGGAATGGTACTGAATCAAATAGCACTATCACACTCCCATGCAGAATAAAACAAATTATAAACTTGTGGCAGGAAGTAGGAAGAGCAATGTATGCCCCTCCCATCCAAGGGCAAATTAGATGTTCATCAAATATTACAGGGCTGCTGCTAGTAAGAGATGGTGGAAGCAACAATAGTAGTAATGATACAGAGACCTTCAGGCCTGGAGGAGGAGATATGAGGGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTCAAAATTGAACCATTAGGAATAGCACCCACCCATGCAAAGAGAAGAGTGGTGCAAAGGGAAAAAAGAGCAATGGGACTTGGAGCTTTCTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAGCAGCAAAACAATTTGCTGAGAGCTATTGAGGCGCAACAGCATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTTTGGAAAGATACCTAAAGGATCAACAGCTCCTGGGGATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTAATGTGCCCTGGAATATTAGTTGGAACCCTAGATGGAATAGATCTCTAGATGAGATTTGGACTAACATGACCTGGAAGCAGTGGGAAAAGGAAATTGACAATTACACAGACATAATATATAACTTAATTGAACAATCACAGAACCAACAAGAACAGAATGAACAAGACTTATTGGCATTAGATAAGTGGGCAAGTTTGTGGAATTGGTTTGACATTACACAGTGGCTATGGTATATAAAAATATTCATAATGATAGTAGGAGGCTTGATAGGTTTAAGAATAGTTTTTACTATACTGTCTATAGTAAATAGAGTTAGGCAGGGATACTCACCATTGTCATTGCAGACCCTCCTCCCAACCCAGAGGGGACCCGACAGGCCCGAAGGAACAGAAGAAGGAGGTGGAGAGAGAGACAGAGGCACATCCACGAGATTAGTGCATGGATTCTTAGCACTCATCTGGGACGACCTGCGGAGCCTGTTCCTCTTCAGTTACCACCGCTTGAGAGACTTACTCTTGATTGCGGCGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCACTGAAGTATTGGTGGAATCTCCTGCAGTATTGGAGTCAGGAAATAAAGAATAGTGCAGTTAGCTTGCTCAACACCACAGCAATAGCAGTAGCTGAGGGGACAGATAGGATTATAGAAGTATTACAAAGAGGCTTTAGAGCTATTCTCCACATACCTACACGAATAAGACAGGGCTTAGAAAGGGCTTTGCTATAA -MK115030.1,tat_exon2,7798,7891,8376,8469,forward,0.4866666666666659,RPSSQPRGDPTGPKEQKKEVERETEAHPRD,RPSSQPRGDPTGPKEQKKEVERETEAHPRD*,AGACCCTCCTCCCAACCCAGAGGGGACCCGACAGGCCCGAAGGAACAGAAGAAGGAGGTGGAGAGAGAGACAGAGGCACATCCACGAGATTAG -MK115030.1,rev_exon2,7799,8075,8377,8653,forward,0.4285714285714286,DPPPNPEGTRQARRNRRRRWRERQRHIHEISAWILSTHLGRPAEPVPLQLPPLERLTLDCGEDCGTSGTQGVGSTEVLVESPAVLESGNKE,DPPPNPEGTRQARRNRRRRWRERQRHIHEISAWILSTHLGRPAEPVPLQLPPLERLTLDCGEDCGTSGTQGVGSTEVLVESPAVLESGNKE*,GACCCTCCTCCCAACCCAGAGGGGACCCGACAGGCCCGAAGGAACAGAAGAAGGAGGTGGAGAGAGAGACAGAGGCACATCCACGAGATTAGTGCATGGATTCTTAGCACTCATCTGGGACGACCTGCGGAGCCTGTTCCTCTTCAGTTACCACCGCTTGAGAGACTTACTCTTGATTGCGGCGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCACTGAAGTATTGGTGGAATCTCCTGCAGTATTGGAGTCAGGAAATAAAGAATAG -MK115030.1,nef,8218,8866,8796,9417,forward,0.7959349593495859,MGNKLSRGLRAGWPAIRERMRRARPVREPEPAAAGVGAASRDLERHGALTSSNTAATNTDVACLEAQQEEEEVGFPVRPQVPLRPMTYKGALDISHFLKEKGGLDGLIYSKRRQDILDLWLYNTQGYFPDWQNYTPGPGVRFPLCFGWCFKLVPVDPDKVEEASVGENNCLLSPENLHGMEDEHREVLQWRFDSRLAFHHVARELHPEYYKDC,MGNKLSRGLRAGWPAIRERMRRARPVREPEPAAAGVGAASRDLERHGALTSSNTAATNTDVACLEAQQEEEEVGFPVRPQVPLRPMTYKGALDISHFLKEKGGLDGLIYSKRRQDILDLWLYNTQGYFPDWQNYTPGPGVRFPLCFGWCFKLVPVDPDKVEEASVGENNCLLSPENLHGMEDEHREVLQWRFDSRLAFHHVARELHPEYYKDC*H*,ATGGGTAACAAGTTGTCAAGAGGGCTCAGGGCTGGATGGCCTGCCATAAGGGAGAGAATGAGACGAGCTAGGCCAGTAAGAGAGCCAGAGCCAGCAGCAGCTGGGGTGGGAGCAGCATCTCGAGACCTGGAAAGACATGGAGCACTTACAAGTAGCAATACAGCAGCTACCAATACTGATGTTGCCTGCCTGGAAGCACAACAGGAGGAGGAAGAGGTGGGTTTTCCAGTCAGACCTCAGGTACCTTTAAGGCCAATGACTTACAAGGGAGCTCTAGATATTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGATGGGCTAATTTACTCCAAAAGAAGACAAGACATCCTTGATCTGTGGCTCTACAACACACAAGGCTACTTCCCTGACTGGCAGAACTACACACCAGGGCCAGGAGTCAGATTTCCACTGTGTTTTGGATGGTGCTTCAAGCTAGTACCAGTTGATCCAGATAAGGTAGAAGAGGCCAGTGTAGGAGAGAACAACTGCTTGTTAAGCCCCGAAAACCTGCATGGAATGGAGGACGAACACAGAGAAGTATTGCAGTGGAGGTTTGACAGCCGCCTAGCATTTCATCACGTGGCCCGAGAGCTGCATCCGGAGTATTACAAGGACTGCTGACACTGA -MK115498.1,gag,663,2169,789,2292,forward,0.2571999999999999,MGARASILSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWTTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSANVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE,MGARASILSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWTTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSANVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE*R*,ATGGGTGCGAGAGCGTCAATATTAAGCGGGGGAAAATTAGATGCATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATTTAGTATGGGCAAGCAGGGAGCTAGAACGATTTGCCGTTAACCCTGGCCTGTTAGAAACATCAGAGGGATGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATTTAATGCAGTAGCAGTCCTCTATTGTGTACATCAAAGGATACAGGTACAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGTAGCAGCAGCTGACACTGACACAGGAAACAGCAGCCAAAATTACCCCATAGTGCAGAACCTCCAGGGGCAAATGGTACATCAGCCCCTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAAAAGGCCTTCAGCCCAGAAGTCATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGACGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCTTGGGATTAAATAAAATAGTAAGGATGTATAGCCCTACCAGTATTCTGGATATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAGAACTTTAAGAGCTGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATTCGAATCCAGATTGTAAGACTATTTTAAAAGCATTAGGACCAGCAGCAACACTAGAGGAAATGATGACAGCATGTCAAGGAGTGGGGGGACCAGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAAATTCAGCTAATGTAATGATGCAGAGAGGCAATTTTAGAAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACATCAAATGAAAGACTGTACAGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAG -MK115498.1,pol,1955,4967,2084,5096,forward,0.14755732801595212,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSTGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSTGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAGGGGGGCAATTTAAAGAAGCTTTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACCCATAGAAATCTGTGGACACAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGCTTGGTTGTACCTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTCAATAAGAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAATTCCCTTAGATAAAGAATTCAGGAAGTATACTGCATTTACCATACCTAGTACAAATAATGAGACACCAGGGATTAGGTATGAGTACAATGTGCTGCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGCAAAATCCAGATATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAACTGAGACAACATCTGTTAAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAGTGGACAGTACAGCCTATAATACTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTACGCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAGGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTTTAAGAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGCAATGGACAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTACAAAAGATAGCCACAGAAAGCATAGTAATATGGGGAAAAACTCCTAAATTTAGACTACCTATACAAAAAGAAACATGGGAGACATGGTGGGCAGAGTACTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAATTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACTAAATTAGGCAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAGGTTATCTCCCTAACGGACACAACAAATCAAAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATCAGAAGTAAACATAGTAACAGACTCACAATATACATTAGGAATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAATCAGATAATAGAGCAGTTAATAAAAAAGGAAAAAGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGACAAACTAGTCAGTACTGGAGTCAGGAGAGTACTATTTCTAGATGGAATAGATAAGGCCCAAGAAGACCATGAGAAATATCACAGTAATTGGAGAGCAATGGCTGGTGATTTTAATATACCCCCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCAAAAAGGAGAGGCCATGCATGGACAAGTAGATTGTAGTCCAGGAATATGGCAACTAGATTGTACACATCTAGAAGGGAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTCTCCTGAAACTAGCAGGGAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTAATGTGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCCATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTATAGTGCAGGGGAAAGAATAGTAGATATAATAGCAACAGACCTACAAACTAAAGAATTACAGAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGGAGAAAAGCAAAAATCATTAGGGATTATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG -MK115498.1,vif,4911,5490,5040,5619,forward,0.35416666666666674,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH*,ATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATGTTTCAAAGAAAACTAAAGGATGGTTTTATAGACATCACTATGAAAGCACTCATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTGGTAGTAACAACATATTGGGGCCTGAATACAGGAGAAAGAGAATGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGAAAAAGGAAATATAGCACACAAGTTGACCCTAACCTAGCAGACCAACTAATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACATATAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGCTCTCTACAATACTTGGCACTAAAAGCATTAACAACACCAAAGAGAAGAAAGCCACCTTTACCTAGTGTTAGGAAACTGACAGAGGATAGATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAG -MK115498.1,vpr,5429,5723,5558,5850,forward,0.4038461538461544,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS*T,ATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAGAGCTTTTAGAGGAACTTAAGAATGAAGCGGTTAGACATTTTCCTAGGCCGTGGCTCCATGGCTTAGGACAACATATCTATGAAACTTATGGGGACACTTGGACAGGAGTGGAGGCCATAATAAGAACCCTGCAACAACTGCTGTTTATTCATTTCAGACTTGGGTGTCGACATAGCAGAATAGGCATTGTGCCACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACT -MK115498.1,tat_exon1,5700,5916,5830,6045,forward,0.29166666666666674,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ,ATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCACCCAGGAAGTCAGCCTAAAACTCCTTGTACTAACTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAAAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAG -MK115498.1,rev_exon1,5839,5917,5969,6045,forward,0.5769230769230769,MAGRSGDSDEELLKAVRLIKILYQSS,MAGRSGDSDEELLKAVRLIKILYQSS,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGT -MK115498.1,vpu,5931,6177,6061,6310,forward,0.6865853658536587,MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAKDSGNESEGDQEELSALMEMGHHAPGDVDDL,MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAKDSGNESEGDQEELSALMEMGHHAPGDVDDL*,ATGCAACCTCTGCACATAGCAGCAATAGTAGGATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGACCATAGTGTTAATAGAATATAGGAAAATATTAAGACAAAAAAGGATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAAAAGACAGTGGCAATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAG -MK115498.1,env,6094,8635,6224,8795,forward,0.49135514018691584,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEAHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRNKMQKEYALFYKLDVVPIDNDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYENKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSETETFRPGGGDMKDNWRSELYKYKVEKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEAHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRNKMQKEYALFYKLDVVPIDNDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYENKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSETETFRPGGGDMKDNWRSELYKYKVEKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL*,ATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTGACAGTCTATTATGGGGTACCTGTATGGAAAGAAGCAAACACCACTCTATTTTGTGCATCGGATGCTAAAGCATATACCACAGAGGCACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGGATTGGAAAATGTGACAGAAAATTTTAACATGTGGAAAAATAACATGGTAGAACAGATGCATGAGGATGTAATCAATTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCACTAATCTGAATGTTACTAATACCAATAGCAGTAGTGAGGAGGGAAAGATGGCGGAAGAAATGAGAAACTGCTCTTTCAATATCACCACAAAAATAAGAAATAAGATGCAGAAGGAATATGCACTTTTTTATAAACTTGATGTAGTACCAATAGATAATGATAATACAAGTTATACATTGATAAATTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCTATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAGGATAAGAAGTTCAATGGATCAGGACCATGTAAAAATGTCAGCACAGTACAATGTACACATGGAATTAAGCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTTTAGCAGAAGAAGAGGTAGTAATTAGATCTGAAAATTTCACGAACAATGCTAAAACCATAATAGTACATCTGAAGGAACCTATACAAATTAATTGTACAAGACCCAACAACAATACAATGAAAAGTATCCCTCTAGGACCAGGAAGAGCATTCTATGCAACAGGAGCCATAATAGGAGATATAAGACAAGCACATTGTAACCTTAGTAGAAAAGCATGGAATAATACTTTAAAACAGGTAGTTGAAAAATTAAAAGAACAATATGAGAATAAAACAATAATCTTTAATCACTCCTCAGGAGGGGACCCAGAAATTATAATGCATACTTTTAATTGTGGAGGGGAATTTTTCTATTGTAATACAACACAGCTGTTTAATAGTACTTGGAATAGTACTTGGACTGGGAATGCTACCGAATTAGATGGAAACATCACACTCCCATGCAGAATAAAACAGATTATAAACAGGTGGCAAGAAGTAGGAAAAGCAATGTATGCCCCTCCCATTAGAGGAAAAATTAGATGTTCATCAAATATTACAGGGTTACTATTAGTAAGAGATGGTGGTAACACGAGCGAGACTGAGACCTTCAGACCTGGAGGAGGAGATATGAAGGACAATTGGAGGAGTGAATTATATAAATATAAAGTAGAAAAAATTGAGCCATTAGGAGTAGCACCCACCAGGGCAAAGAGAAGAGTGGTGCAAAGAGAAAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAAGCCAGGCTGTTATTGTCTGGTATAGTGCAACAGCAAAACAATTTGCTGAGAGCTATTGAGGCGCAACAACATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTACAGGATCAACAGCGCCTGGGAATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCCTGGAATGCTAGTTGGAGTAATAAATCTCTGAATCAGATTTGGGATAACATGACCTGGATGGAGTGGGAAAGAGAAATTAACAATTACACAGACACAATATACACCTTAATTGAAAAGGCGCAGAACCAGCAGGAAAAAAATGAACAAGAATTATTGGAATTGGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAAATGGCTGTGGTACATAAAATTATTCATAATGATAGTAGGAGGATTGATAGGTTTAAGAATAGTTTTTGCTGTACTTGCTATAGTAAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGCCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAGCTTATTCAATGTCACAGCCATCGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAAGAGCTTGTAGAGCTCTTCTCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCATTGTTATAA -MK115498.1,tat_exon2,8216,8312,8376,8469,forward,0.28666666666666596,RPTSQPRGDPTGPKESKKKVEKETETDQFD,RPTSQPRGDPTGPKESKKKVEKETETDQFD**,AGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGA -MK115498.1,rev_exon2,8217,8502,8377,8653,forward,0.39560439560439553,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVPLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVPLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE*CY*,GACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGCCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAG -MK115498.1,nef,8636,9257,8796,9417,forward,0.6162601626016186,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPMSLHGMEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPMSLHGMEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC*H*,ATGGGGGGCAAGTGGTCAAAAAGTAGTGGGGGTGGATGGCCTGCTGTAAGGGAAAGAATGAGACGAACTGAGCCAGCAGCAGAAGGGGTGGGAGCAGTATCTCGAGACCTGGAAAGACATGGAGCAGTCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGCGCCTGGCTGGAAGCACAAGAAGAGGACAGTGAAGTGGGTTTTCCAGTCAGACCTCAGGTGCCTTTAAGACCAATGACTTTCAAAGGAGCTCTCGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCCCAAAAAAGACAAGATATCCTTGACCTGTGGGTCTACAACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGACCAGATATCCACTGACCTTTGGGTGGTGTTTCAAGCTAGTACCAGTGGAGCCAGAAGAGGCCAATCAAGGAGAGAACAACTGCTTGTTACACCCTATGAGCCTGCATGGGATGGAGGACCCGGAAAAAGAAGTATTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCACATGGCCCGAGAGAAGCATCCGGAGTACTACAAAGACTGCTGACATTGA -MK115211.1,gag,250,1753,789,2292,forward,0.1938000000000002,MGARASVLSGGELDKWEKIRLRPGGKKRYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPALQTGSEELKSLFNTVAVLYCVHQKIEIKDTKEALDKIEEEQNKSKKKTQQAAADTGHNSQVSQNYPIVQNMQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSNAVMMQKGNFRSQRKMVKCFNCGKEGHIARNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFPQSRTEPTAPPEESFSFGEKTTTPSQKQEPIDQELYPLSSLKSLFGNDP,MGARASVLSGGELDKWEKIRLRPGGKKRYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPALQTGSEELKSLFNTVAVLYCVHQKIEIKDTKEALDKIEEEQNKSKKKTQQAAADTGHNSQVSQNYPIVQNMQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSNAVMMQKGNFRSQRKMVKCFNCGKEGHIARNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFPQSRTEPTAPPEESFSFGEKTTTPSQKQEPIDQELYPLSSLKSLFGNDP*SQ*,ATGGGTGCGAGAGCGTCGGTATTAAGCGGGGGAGAATTAGACAAATGGGAGAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAGATATAAGTTAAAACATATAGTATGGGCAAGCAGGGAACTGGAACGATTCGCAGTTAATCCTGGCCTGTTAGAAACATCAGAAGGCTGTAGACAAATACTGGGACAGCTACAACCAGCCCTTCAGACAGGATCAGAGGAACTTAAATCATTATTTAATACAGTAGCAGTCCTCTATTGTGTGCATCAAAAGATAGAGATAAAAGACACCAAGGAAGCTTTAGACAAGATAGAGGAAGAACAAAACAAAAGTAAGAAAAAGACACAGCAAGCAGCAGCTGACACAGGACATAACAGCCAGGTCAGCCAAAATTACCCTATAGTGCAGAACATGCAGGGGCAAATGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTGAAAGTAGTAGAAGAGAAGGCATTTAGCCCAGAAGTAATACCCATGTTTTCAGCCTTATCAGAAGGAGCCACCCCACAAGATTTGAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACTATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCGATTGCACCAGGCCAGATGAGAGAGCCGAGGGGAAGTGACATAGCAGGAACCACCAGTACCCTTCAGGAGCAAATAGGATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTACAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGAATGTATAGTCCTACCAGCATTCTGGACATAAGACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGATCGGTTCTATAAAACTCTAAGAGCCGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAGAATGCAAACCCAGATTGTAAAACCATTTTAAAAGCATTGGGTCCAGCAGCTACACTAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCCGGCCATAAGGCAAGAGTTTTGGCGGAAGCAATGAGCCAAGTAACAAACTCAAATGCCGTGATGATGCAGAAAGGCAATTTTAGGAGCCAAAGAAAGATGGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGGAAAAGGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGATTGTACTGAGAGACAGGCAAATTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGAAGGCCAGGGAACTTTCCTCAAAGCAGGACAGAACCAACAGCCCCACCAGAGGAGAGCTTCAGTTTTGGGGAAAAGACAACAACTCCTTCTCAGAAGCAGGAGCCGATAGACCAGGAACTATACCCTCTGTCTTCCCTCAAATCACTCTTTGGCAACGACCCTTAGTCACAGTAA -MK115211.1,pol,1545,4557,2084,5096,forward,0.20219341974077754,FFRENLAFPQGKARELSSKQDRTNSPTRGELQFWGKDNNSFSEAGADRPGTIPSVFPQITLWQRPLVTVRIGGQLKEALLDTGADDTVLEDMNLPGRWKPKMIGGIGGFIKVKQYDQISVEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPRVKQWPLTEEKIKALTEICKEMEKEGKISRIGPENPYNTPIFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKVEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGAKALTEVVPLTEEAELELAENREILKEPVHGVYYDPTKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWESWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIIGAETFYVDGAANRETKSGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIQKEKVYLAWVPAHKGIGGNEQVDKLVSSGIRKVLFLDGIDKAQEDHEKYHSNWRAMASDFNLPPVIAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPNFTSNAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKQLKQIIGQVREQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKVKIIRDYGKQMAGDGCVASRQDED,FFRENLAFPQGKARELSSKQDRTNSPTRGELQFWGKDNNSFSEAGADRPGTIPSVFPQITLWQRPLVTVRIGGQLKEALLDTGADDTVLEDMNLPGRWKPKMIGGIGGFIKVKQYDQISVEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPRVKQWPLTEEKIKALTEICKEMEKEGKISRIGPENPYNTPIFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKVEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGAKALTEVVPLTEEAELELAENREILKEPVHGVYYDPTKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWESWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIIGAETFYVDGAANRETKSGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIQKEKVYLAWVPAHKGIGGNEQVDKLVSSGIRKVLFLDGIDKAQEDHEKYHSNWRAMASDFNLPPVIAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPNFTSNAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKQLKQIIGQVREQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKVKIIRDYGKQMAGDGCVASRQDED*,TTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGAAGGCCAGGGAACTTTCCTCAAAGCAGGACAGAACCAACAGCCCCACCAGAGGAGAGCTTCAGTTTTGGGGAAAAGACAACAACTCCTTCTCAGAAGCAGGAGCCGATAGACCAGGAACTATACCCTCTGTCTTCCCTCAAATCACTCTTTGGCAACGACCCTTAGTCACAGTAAGGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTGTTAGAAGACATGAATTTACCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAAACAGTATGATCAGATATCAGTAGAAATTTGTGGACATAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAATATAATTGGAAGAAATCTGTTGACTCAGATTGGTTGTACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAGAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAACAGAAATTTGTAAGGAAATGGAAAAGGAAGGGAAAATTTCAAGAATTGGGCCTGAAAATCCATACAATACTCCAATATTTGCAATAAAGAAAAAAGACAGTACTAAATGGAGAAAGTTAGTAGATTTTAGAGAACTTAATAAGAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACACCCCGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCCTAGATAAAGACTTCAGGAAATATACTGCATTTACCATACCTAGTACAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTACTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCTGACATAGTTATATATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAGTAGAGGAACTGAGACAACATCTGTTGAAGTGGGGGTTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTTCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATACAACTGCCAGAGAAAGACAGCTGGACTGTCAATGATATACAGAAATTAGTGGGAAAGTTGAATTGGGCAAGTCAGATTTATCCAGGGATTAAAGTAAGGCAGTTATGTAAACTACTTAGAGGAGCCAAGGCGCTAACAGAAGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATCCTAAAAGAACCAGTACATGGAGTGTATTATGACCCAACAAAAGACTTAATAGCAGAAATACAGAAGCAGGGGCAAGGTCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAACTTGAAAACAGGAAAATATGCAAGAACAAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAGCCACAGAAAGCATAGTAATATGGGGAAAGACCCCTAAATTTAGACTACCCATTCAAAAAGAAACATGGGAATCATGGTGGACAGAATATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAAAAAGAACCCATAATAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACAAAATCAGGAAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAAGTTATTTCCCTAACTGACACAACAAATCAGAAGACTGAGTTACAAGCAATTCATCTAGCTTTGCAGGATTCAGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAGGCACAACCAGATAAAAGCGAATCAGAGTTAGTCAATCAAATAATAGAGCAATTAATACAAAAGGAAAAGGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGGGGAAATGAACAAGTAGATAAATTAGTCAGTTCTGGAATCAGAAAGGTACTATTTTTGGATGGAATAGATAAAGCCCAAGAAGATCATGAAAAATATCACAGTAATTGGAGAGCAATGGCTAGTGACTTTAACCTACCACCTGTAATAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGAGAAGCTATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAATTAGATTGTACACATTTAGAAGGAAAAATTATCCTGGTAGCAGTTCATGTAGCTAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGACAGGAAACAGCATACTTTCTCTTAAAATTAGCAGGAAGATGGCCAGTAACAACAATACATACAGACAATGGCCCCAACTTCACCAGTAATGCAGTTAAGGCCGCCTGTTGGTGGGCAGGGGTCAAACAAGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTTGTAGAATCTATGAATAAACAATTAAAACAAATTATAGGGCAGGTAAGAGAGCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAATAGACATAATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAGGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTGGTAATACAAGATAATAGTGACATAAAAGTAGTACCAAGAAGAAAAGTAAAAATTATTAGGGATTATGGAAAACAGATGGCAGGTGATGGTTGTGTGGCAAGTAGACAGGATGAGGATTAA -MK115211.1,vif,4501,5083,5040,5619,forward,0.39687499999999987,MENRWQVMVVWQVDRMRINMWKSLVKYHIHNSGKARGWCYRHHYESRHPRISSEVHIPLGGEARLVVTTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPELADQLIHLYYFNCFSESAIRQAILGHRVSPRCEYQAGHNKVGSLQYLALIALIPPKRRKPPLPSVRKLTEDRWNEPQRTKGHRESHTMNGH,MENRWQVMVVWQVDRMRINMWKSLVKYHIHNSGKARGWCYRHHYESRHPRISSEVHIPLGGEARLVVTTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPELADQLIHLYYFNCFSESAIRQAILGHRVSPRCEYQAGHNKVGSLQYLALIALIPPKRRKPPLPSVRKLTEDRWNEPQRTKGHRESHTMNGH*,ATGGAAAACAGATGGCAGGTGATGGTTGTGTGGCAAGTAGACAGGATGAGGATTAACATGTGGAAAAGCTTAGTAAAATACCATATACATAATTCAGGGAAGGCTAGGGGATGGTGTTATAGACATCACTATGAAAGCAGACATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGAGGAGAGGCTAGACTAGTAGTGACAACATATTGGGGCCTGCATACAGGAGAAAGAGACTGGCATTTGGGTCAAGGAGTCTCCATAGAATGGAGGAAAAGGAGATATAGCACACAAGTAGACCCTGAACTAGCAGACCAACTAATTCATCTGTATTATTTTAATTGTTTTTCAGAATCTGCTATAAGACAAGCCATATTAGGACATAGAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAATAAGGTAGGATCTCTGCAGTACTTGGCACTAATAGCATTAATACCACCAAAAAGGAGAAAGCCACCTTTGCCTAGTGTGAGGAAACTGACAGAGGATAGATGGAACGAGCCCCAGAGGACCAAGGGCCACAGAGAGAGCCATACAATGAATGGACACTAG -MK115211.1,vpr,5022,5316,5558,5850,forward,0.4807692307692313,MERAPEDQGPQREPYNEWTLELLEELKREAVRHFPRAWLHGLGQHIYETYGDTWAGVEALIRTLQQLVFIHFRIGCQHSRIGILTHRRARNGASRS,MERAPEDQGPQREPYNEWTLELLEELKREAVRHFPRAWLHGLGQHIYETYGDTWAGVEALIRTLQQLVFIHFRIGCQHSRIGILTHRRARNGASRS*T,ATGGAACGAGCCCCAGAGGACCAAGGGCCACAGAGAGAGCCATACAATGAATGGACACTAGAACTTTTAGAAGAGCTTAAAAGAGAAGCTGTTAGGCACTTTCCTAGGGCATGGCTTCACGGCCTAGGACAACATATCTATGAAACTTATGGAGATACTTGGGCAGGAGTGGAAGCTCTAATAAGAACTCTGCAACAACTGGTGTTTATTCATTTCAGAATTGGATGTCAGCACAGCAGGATAGGCATTCTTACCCATAGAAGGGCAAGAAATGGAGCCAGTAGATCCTAGACT -MK115211.1,tat_exon1,5293,5512,5830,6045,forward,0.5694444444444444,MEPVDPRLEPWKHPGSQPKTACTSCYCKRCCYHCPRCFLTKGLGISYGRKKRRQRRRTPQDNQNHQVSLSKQ,MEPVDPRLEPWKHPGSQPKTACTSCYCKRCCYHCPRCFLTKGLGISYGRKKRRQRRRTPQDNQNHQVSLSKQ*,ATGGAGCCAGTAGATCCTAGACTGGAGCCCTGGAAGCATCCAGGGAGTCAGCCTAAGACTGCTTGCACCAGTTGCTATTGTAAAAGGTGTTGCTATCATTGCCCGCGATGCTTCTTAACAAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAACTCCTCAGGATAACCAGAACCATCAAGTTTCTTTATCAAAACAGTGA -MK115211.1,rev_exon1,5432,5513,5969,6045,forward,0.7115384615384615,MAGRSGDSDEELLRITRTIKFLYQNSE,MAGRSGDSDEELLRITRTIKFLYQNSE,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAACTCCTCAGGATAACCAGAACCATCAAGTTTCTTTATCAAAACAGTGAG -MK115211.1,vpu,5524,5794,6061,6310,forward,0.7439024390243905,MQSLEILAIVALVVAFIIAIVVWSIVFIEYRKIRRQKRIDRILDRIRERAEDSGNESEGDQEELAALVEMGNHAHLGMGHHAPWEVNDL,MQSLEILAIVALVVAFIIAIVVWSIVFIEYRKIRRQKRIDRILDRIRERAEDSGNESEGDQEELAALVEMGNHAHLGMGHHAPWEVNDL*,ATGCAATCTTTAGAAATATTAGCAATAGTAGCATTAGTAGTAGCATTTATAATAGCAATAGTCGTTTGGTCTATAGTATTCATAGAATATAGGAAAATAAGAAGACAAAAGAGAATAGACAGGATACTTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGGGACCAAGAAGAATTGGCAGCCCTCGTGGAGATGGGGAACCATGCTCATTTGGGGATGGGCCACCATGCTCCTTGGGAGGTCAATGACCTGTAA -MK115211.1,env,5687,8198,6224,8795,forward,1.2061915887850478,MHSFNCRGEFFYCNTTQLFNSTWNSTTGVNGTGANNTEVNIITLPCKIKQIVNMWQEVGKAMYAPPISGQISCSSNITGLLLLRDGGNSNDTDNTTEIFRPGGGDMRDNWRSELYKYKVVQIEPLGVAPTKARRRVVQREKRAVGIGALFLGFLGAAGSTMGAASITLTVQARHLLSGIVQQQNNLLRAIEAQQHMLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTNVPWNSSWSNKNLSYIWNNMTWMQWEKEIDNYTEVIYNLIEQSQNQQEKNEQELLELDKWASLWTWFDITKWLWYIKIFIMIVGGLIGLRIVFTVLSIVNRVRQGYSPLSFQTLLPAARGPDRPEGIGEEGGERDRDRSSHLAHGFLTIIWVDLRSLFLFSYHHLRDLLLIVARGVELLGRRGWEALKYWWNLLQYWSQELKNSAVSLLNATAIAVAEGTDRFIEVLQRIFRAIIHIPTRIRQGLERALL,MRVKGTKKNWQPSWRWGTMLIWGWATMLLGRSMTCNAEDSWVTVYYGVPVWKEATTTLFCASDAKAYDPEVHNVWATHACVPTDPNPQEVELNVTENFNAWKNNMVDQMHEDIISLWDQSLKPCVKLTPLCVTLNCTELKNSTTINNTSSIEEGEMKNCSFNATTAIRDKVQKQYALFYRLDVVQIKDDNTSYNTRYRLINCNSATITQACPKVSFEPIPIH*VQCTHGIRPVVSTQLLLNGSLAEGDVVIRSKNFSNSAQTIIVQLNETVEINCTRPNNNTRKSIHIGPGRAFYATGDIIGDIRKAHCNISRAKWNETLKKIADKLREQFKRETIVFNQSSGGDPEIVMHSFNCRGEFFYCNTTQLFNSTWNSTTGVNGTGANNTEVNIITLPCKIKQIVNMWQEVGKAMYAPPISGQISCSSNITGLLLLRDGGNSNDTDNTTEIFRPGGGDMRDNWRSELYKYKVVQIEPLGVAPTKARRRVVQREKRAVGIGALFLGFLGAAGSTMGAASITLTVQARHLLSGIVQQQNNLLRAIEAQQHMLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTNVPWNSSWSNKNLSYIWNNMTWMQWEKEIDNYTEVIYNLIEQSQNQQEKNEQELLELDKWASLWTWFDITKWLWYIKIFIMIVGGLIGLRIVFTVLSIVNRVRQGYSPLSFQTLLPAARGPDRPEGIGEEGGERDRDRSSHLAHGFLTIIWVDLRSLFLFSYHHLRDLLLIVARGVELLGRRGWEALKYWWNLLQYWSQELKNSAVSLLNATAIAVAEGTDRFIEVLQRIFRAIIHIPTRIRQGLERALL*,ATGAGAGTGAAGGGGACCAAGAAGAATTGGCAGCCCTCGTGGAGATGGGGAACCATGCTCATTTGGGGATGGGCCACCATGCTCCTTGGGAGGTCAATGACCTGTAATGCAGAAGACTCGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAAAGAAGCAACCACCACTCTATTTTGTGCATCAGATGCCAAAGCATATGACCCAGAGGTACACAATGTCTGGGCCACACATGCTTGTGTACCCACAGACCCCAACCCACAAGAAGTAGAATTAAATGTGACAGAAAATTTTAATGCATGGAAAAATAACATGGTAGATCAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAACTGCACTGAGTTGAAGAATAGCACTACTATAAACAATACCAGTAGTATAGAAGAAGGAGAAATGAAAAACTGTTCTTTTAATGCCACCACAGCAATAAGAGATAAGGTGCAAAAACAATATGCACTTTTTTATAGACTTGATGTAGTACAAATTAAGGATGATAATACCAGCTATAATACCAGATATAGGTTGATAAATTGTAACTCCGCAACCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTAGGTACAATGTACACATGGAATTAGGCCAGTAGTATCAACTCAACTGTTGTTAAATGGCAGTCTAGCAGAAGGAGATGTAGTAATTAGATCTAAAAATTTCTCTAACAGTGCTCAAACCATAATAGTACAATTAAACGAAACTGTAGAAATTAATTGTACAAGACCCAACAATAATACAAGAAAAAGTATACATATAGGACCAGGGAGAGCATTTTATGCAACAGGAGACATAATAGGAGATATAAGAAAAGCACATTGTAACATTAGTAGAGCAAAATGGAATGAGACTTTAAAAAAGATAGCTGATAAATTAAGGGAACAATTTAAAAGAGAGACAATAGTCTTTAACCAATCCTCAGGAGGGGACCCAGAGATTGTAATGCACAGTTTTAATTGTAGAGGGGAATTTTTCTACTGTAATACAACACAACTGTTTAATAGTACTTGGAATAGTACTACAGGAGTAAATGGTACAGGAGCAAATAATACAGAAGTAAATATTATCACACTCCCATGCAAGATAAAGCAAATTGTAAACATGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCATCAGTGGACAAATTAGTTGTTCATCAAATATTACAGGGCTACTACTACTAAGAGATGGTGGTAATAGCAATGACACGGATAACACGACTGAAATCTTCAGACCTGGAGGAGGAGATATGAGAGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTACAAATTGAACCATTAGGAGTAGCACCCACCAAGGCAAGGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTCTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCATCAATAACGCTGACGGTACAAGCCAGACACTTATTGTCTGGTATAGTGCAACAGCAGAACAATTTGCTGAGAGCTATTGAGGCGCAACAGCATATGTTGCAGCTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTAGAAAGATACCTTAAGGATCAACAGCTCCTGGGGATTTGGGGTTGCTCTGGAAAACTCATCTGCACCACTAATGTGCCTTGGAATAGTAGTTGGAGTAATAAAAATCTGAGTTACATTTGGAATAACATGACCTGGATGCAGTGGGAAAAAGAAATTGACAATTACACAGAGGTAATATACAACTTAATTGAACAATCGCAAAACCAGCAAGAAAAGAATGAACAAGAATTATTGGAATTGGATAAATGGGCAAGTTTGTGGACTTGGTTTGACATAACAAAGTGGCTGTGGTATATAAAAATATTTATAATGATAGTAGGAGGCTTAATAGGTTTAAGAATAGTTTTTACTGTACTTTCTATAGTGAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCTCCTCCCAGCCGCGAGGGGACCCGACAGGCCCGAAGGAATCGGAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCAGTCACTTAGCGCATGGATTCTTAACAATTATCTGGGTCGACCTGCGGAGCCTGTTCCTCTTCAGCTACCACCACTTGAGAGACTTACTCTTGATTGTAGCGAGGGGTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAGTATTGGTGGAATCTCCTGCAGTATTGGAGCCAGGAACTAAAGAATAGTGCTGTCAGCTTGCTCAACGCCACAGCCATAGCAGTAGCTGAGGGGACAGATAGGTTTATAGAAGTATTGCAAAGAATTTTTAGAGCTATTATCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCTTTGCTATAA -MK115211.1,tat_exon2,7779,7872,8376,8469,forward,0.4866666666666659,RPSSQPRGDPTGPKESEKKVERETETDPVT,RPSSQPRGDPTGPKESEKKVERETETDPVT*,AGACCCTCCTCCCAGCCGCGAGGGGACCCGACAGGCCCGAAGGAATCGGAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCAGTCACTTAG -MK115211.1,rev_exon2,7780,8056,8377,8653,forward,0.46153846153846145,DPPPSREGTRQARRNRRRRWRERQRQIQSLSAWILNNYLGRPAEPVPLQLPPLERLTLDCSEGCGTSGTQGVGSPQVLVESPAVLEPGTKE,DPPPSREGTRQARRNRRRRWRERQRQIQSLSAWILNNYLGRPAEPVPLQLPPLERLTLDCSEGCGTSGTQGVGSPQVLVESPAVLEPGTKE*,GACCCTCCTCCCAGCCGCGAGGGGACCCGACAGGCCCGAAGGAATCGGAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCAGTCACTTAGCGCATGGATTCTTAACAATTATCTGGGTCGACCTGCGGAGCCTGTTCCTCTTCAGCTACCACCACTTGAGAGACTTACTCTTGATTGTAGCGAGGGGTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAGTATTGGTGGAATCTCCTGCAGTATTGGAGCCAGGAACTAAAGAATAG -MK115211.1,nef,8199,8838,8796,9417,forward,0.6943089430894234,MGGIFSKRNGGGWPAIRERMRRAQPAADGVGAASRDLERHGALTSNNTPANNADCAWLEAQEEGEEVGFPVRPQVPLRPMTYKGAVDLSHFLKEKGGLEGLIYSQQRQDILDLWVYNTQGYFPDWQNYTPGPGIRYPLTFGWCFKLVPMEPEDVEKATEGEDNILLHPVNQHGMDDPDKEVLVWKFDSRLAFRHVAREIHPEYYKNC,MGGIFSKRNGGGWPAIRERMRRAQPAADGVGAASRDLERHGALTSNNTPANNADCAWLEAQEEGEEVGFPVRPQVPLRPMTYKGAVDLSHFLKEKGGLEGLIYSQQRQDILDLWVYNTQGYFPDWQNYTPGPGIRYPLTFGWCFKLVPMEPEDVEKATEGEDNILLHPVNQHGMDDPDKEVLVWKFDSRLAFRHVAREIHPEYYKNC*QRAF*,ATGGGAGGCATATTCTCAAAACGTAATGGGGGTGGGTGGCCTGCAATAAGGGAAAGAATGAGACGAGCTCAGCCAGCAGCAGATGGGGTAGGAGCAGCATCTCGAGACCTGGAAAGACATGGAGCTCTCACAAGTAACAATACACCAGCTAACAATGCTGATTGTGCCTGGCTGGAAGCACAGGAAGAGGGGGAAGAAGTGGGTTTCCCAGTCAGACCTCAGGTACCTTTAAGACCAATGACATACAAGGGAGCTGTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGTTAATTTACTCCCAACAAAGACAAGATATCCTTGATCTGTGGGTCTACAACACACAGGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGATAAGATATCCACTGACCTTTGGATGGTGCTTCAAGCTAGTGCCAATGGAACCAGAGGATGTAGAAAAGGCCACTGAAGGAGAGGACAACATCTTGTTACACCCTGTGAACCAGCATGGGATGGACGACCCAGATAAAGAAGTGTTAGTGTGGAAGTTTGACAGCCGCCTAGCATTCCGTCACGTGGCCCGAGAGATACATCCGGAGTACTACAAGAACTGCTGACAGCGAGCTTTCTAA -MK115158.1,gag,316,1819,234,1731,forward,0.3517171717171721,MGARASVLSGGELDKWEKIRLRPGGKKQYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPALQTGSEELKSLFNTVAVLYCVHQRIEIKDTKEALDKIEEEQNKSKKKTQQAAADPGNSNQVSQNYPIVQNMQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSASVMMQKGNFRSQRKMVKCFNCGKEGHIARNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFPQSRTEPTAPPEESFSFGEKTTTPSQKQEPIDQELYPMSSLKSLFGNDP,MGARASVLSGGELDKWEKIRLRPGGKKQYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPALQTGSEELKSLFNTVAVLYCVHQRIEIKDTKEALDKIEEEQNKSKKKTQQAAADPGNSNQVSQNYPIVQNMQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSASVMMQKGNFRSQRKMVKCFNCGKEGHIARNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFPQSRTEPTAPPEESFSFGEKTTTPSQKQEPIDQELYPMSSLKSLFGNDP*SQ*,ATGGGTGCGAGAGCGTCGGTATTAAGCGGGGGAGAATTAGACAAATGGGAGAAAATTCGGTTAAGGCCAGGGGGAAAGAAACAATATAAGTTAAAACATATAGTATGGGCAAGCAGGGAACTGGAACGATTCGCAGTTAATCCTGGCCTGTTAGAAACATCAGAAGGCTGTAGACAAATACTGGGACAGCTACAACCAGCCCTTCAGACAGGATCAGAGGAACTTAAATCATTATTTAATACAGTAGCAGTCCTCTATTGTGTGCATCAAAGGATAGAGATAAAAGACACCAAGGAAGCTTTAGACAAGATAGAGGAAGAACAAAACAAAAGTAAGAAAAAGACACAGCAAGCAGCAGCTGACCCAGGAAATAGCAACCAGGTCAGCCAAAATTACCCTATAGTGCAGAACATGCAGGGGCAAATGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTGAAAGTAGTAGAAGAGAAGGCTTTTAGCCCAGAAGTAATACCCATGTTTTCAGCCTTATCAGAAGGAGCCACCCCACAAGATTTGAACACGATGCTAAACACAGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACTATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCGATTGCACCAGGCCAGATGAGAGAACCGAGGGGAAGTGACATAGCAGGAACCACCAGTACCCTTCAGGAGCAAATAGGATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTACAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGAATGTATAGTCCTACCAGCATTCTGGACATAAGACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGATCGGTTCTATAAAACTCTAAGAGCCGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAGAATGCAAACCCAGATTGTAAGACCATTTTAAAAGCATTAGGTCCAGCAGCTACACTAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCCGGCCATAAGGCAAGAGTTTTGGCGGAAGCAATGAGCCAAGTAACAAACTCAGCTTCCGTGATGATGCAGAAAGGCAATTTTAGGAGCCAAAGAAAGATGGTTAAGTGTTTCAATTGTGGCAAAGAAGGACACATAGCCAGAAATTGCAGGGCCCCTAGGAAAAGGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGATTGTACTGAGAGACAGGCAAATTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGGAGGCCAGGGAACTTTCCTCAAAGCAGAACAGAACCAACAGCCCCACCAGAGGAGAGCTTCAGTTTTGGGGAAAAGACAACAACTCCTTCTCAGAAGCAGGAGCCGATAGACCAGGAACTATACCCTATGTCTTCCCTCAAATCACTCTTTGGCAACGACCCTTAGTCACAGTAA -MK115158.1,pol,1611,4623,1526,4535,forward,0.26447105788423153,FFRENLAFPQGEARELSSKQNRTNSPTRGELQFWGKDNNSFSEAGADRPGTIPYVFPQITLWQRPLVTVRIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVKQYDQISVEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPRVKQWPLTEEKIKALTEICKEMEKEGKISKIGPENPYNTPIFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTRILEPFRKQNPDMVIYQYMDDLYVGSDLEIGQHRTKVEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGAKALTEVVPLTEEAELELAENREILKEPVHGVYYDPTKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWESWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIIGAETFYVDGAANRETKSGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIQKEKVYLAWVPAHKGIGGNEQVDKLVSSGIRKVLFLDGIDKAQEDHEKYHSNWRAMASDFNIPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPNFTSNAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKQLKQIIGQVREQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDGCVASRQDED,FFRENLAFPQGEARELSSKQNRTNSPTRGELQFWGKDNNSFSEAGADRPGTIPYVFPQITLWQRPLVTVRIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVKQYDQISVEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPRVKQWPLTEEKIKALTEICKEMEKEGKISKIGPENPYNTPIFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTRILEPFRKQNPDMVIYQYMDDLYVGSDLEIGQHRTKVEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGAKALTEVVPLTEEAELELAENREILKEPVHGVYYDPTKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWESWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIIGAETFYVDGAANRETKSGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIQKEKVYLAWVPAHKGIGGNEQVDKLVSSGIRKVLFLDGIDKAQEDHEKYHSNWRAMASDFNIPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPNFTSNAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKQLKQIIGQVREQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDGCVASRQDED*,TTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGGAGGCCAGGGAACTTTCCTCAAAGCAGAACAGAACCAACAGCCCCACCAGAGGAGAGCTTCAGTTTTGGGGAAAAGACAACAACTCCTTCTCAGAAGCAGGAGCCGATAGACCAGGAACTATACCCTATGTCTTCCCTCAAATCACTCTTTGGCAACGACCCTTAGTCACAGTAAGGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTGTTAGAAGAAATGAGTCTACCAGGAAGATGGAAGCCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAAACAGTATGATCAGATATCAGTAGAAATTTGTGGACATAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAATATAATTGGAAGAAATCTGTTGACTCAGATTGGTTGTACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAGAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAACAGAAATTTGTAAGGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAATATTTGCAATAAAGAAAAAAGACAGTACTAAATGGAGAAAGTTAGTAGATTTTAGAGAACTTAATAAGAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACACCCCGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCCTAGATAAAGACTTCAGGAAATATACTGCATTTACCATACCTAGTACAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTACTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAGAATCTTAGAGCCTTTTAGAAAACAAAATCCAGACATGGTTATATATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAGTAGAGGAACTGAGACAACATCTGTTGAAGTGGGGGTTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTTCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATACAACTGCCAGAGAAAGACAGCTGGACTGTCAATGATATACAGAAATTAGTGGGAAAGTTGAATTGGGCAAGTCAGATTTATCCAGGGATTAAAGTAAGGCAGTTATGTAAACTACTTAGAGGAGCCAAGGCGCTAACAGAAGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATCCTAAAAGAACCAGTGCATGGAGTGTATTATGACCCAACAAAAGACTTAATAGCAGAAATACAGAAGCAGGGGCAAGGTCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAACTTGAAAACAGGAAAATATGCAAGAACAAGGGGTGCTCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAGCCACAGAAAGCATAGTAATATGGGGAAAGACCCCTAAATTTAGACTACCCATTCAAAAAGAAACATGGGAATCATGGTGGACAGAATATTGGCAAGCCACTTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAAAAAGAACCCATAATAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACAAAATCAGGAAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAAGTTATCTCCCTAACTGACACAACAAATCAGAAGACTGAGTTACAAGCAATTCATCTAGCTTTGCAGGATTCAGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAGGCACAACCAGATAAAAGCGAATCAGAGTTAGTCAATCAAATAATAGAGCAATTAATACAAAAGGAAAAGGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGGGGAAATGAACAAGTAGATAAATTAGTCAGTTCTGGAATCAGAAAGGTACTATTTTTGGATGGAATAGATAAGGCCCAAGAAGATCATGAAAAATATCACAGTAATTGGAGAGCAATGGCTAGTGACTTTAACATACCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGAGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAATTAGATTGTACACATTTAGAAGGAAAAATTATCCTGGTAGCAGTTCATGTAGCTAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGACAGGAAACAGCATACTTTCTCTTAAAATTAGCAGGAAGATGGCCAGTAACAACAATACATACAGACAATGGCCCCAACTTCACCAGTAATGCAGTTAAGGCCGCCTGTTGGTGGGCAGGGGTCAAACAAGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTTGTAGAATCTATGAATAAACAATTAAAACAAATTATAGGACAGGTAAGAGAGCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAATAGACATAATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAACTTCTTTGGAAAGGTGAGGGGGCAGTAGTAATACAAGATAATAGTGACATAAAAGTAGTACCAAGAAGAAAAGCAAAAATTATTAGGGATTATGGAAAACAGATGGCAGGTGATGGTTGTGTGGCAAGTAGACAGGATGAGGATTAA -MK115158.1,vif,4567,5149,4479,5061,forward,0.5668393782383419,MENRWQVMVVWQVDRMRINMWKSLVKYHIHNSGKARGWCYRHHYESRHPRISSEVHIPLGGEARLVVTTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPDLADQLIHLYYFNCFSESAIRQAILGHRVSPRCEYQAGHNKVGSLQYLALIALIPPKRRKPPLPSVRKRTEDRWNEPQRTKGHRESHTMNGH,MENRWQVMVVWQVDRMRINMWKSLVKYHIHNSGKARGWCYRHHYESRHPRISSEVHIPLGGEARLVVTTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPDLADQLIHLYYFNCFSESAIRQAILGHRVSPRCEYQAGHNKVGSLQYLALIALIPPKRRKPPLPSVRKRTEDRWNEPQRTKGHRESHTMNGH*,ATGGAAAACAGATGGCAGGTGATGGTTGTGTGGCAAGTAGACAGGATGAGGATTAACATGTGGAAAAGTTTAGTAAAATACCATATACATAATTCAGGGAAGGCTAGGGGATGGTGTTATAGACATCACTATGAAAGCAGACATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGAGGAGAGGCTAGACTAGTAGTGACAACATATTGGGGCCTGCATACAGGAGAAAGAGACTGGCATTTGGGTCAAGGAGTCTCCATAGAATGGAGGAAAAGGAGATATAGCACACAAGTAGACCCTGACCTAGCAGACCAACTAATTCATCTGTATTATTTTAATTGTTTTTCAGAATCTGCTATAAGACAAGCCATATTAGGACATAGAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAATAAGGTAGGATCTCTGCAGTACTTGGCACTAATAGCATTAATACCACCAAAAAGGAGAAAGCCACCTTTGCCTAGTGTGAGGAAACGGACAGAGGATAGATGGAACGAGCCCCAGAGGACCAAGGGCCACAGAGAGAGCCATACAATGAATGGACACTAG -MK115158.1,vpr,5088,5379,5000,5291,forward,0.46875,MERAPEDQGPQREPYNEWTLELLEELKREAVRHFPRAWLHGLGQHIYETYGDTWAGVEALIRILQQLVFIHFRIGCQHSRIGILTHRRARNGASRS,MERAPEDQGPQREPYNEWTLELLEELKREAVRHFPRAWLHGLGQHIYETYGDTWAGVEALIRILQQLVFIHFRIGCQHSRIGILTHRRARNGASRS*,ATGGAACGAGCCCCAGAGGACCAAGGGCCACAGAGAGAGCCATACAATGAATGGACACTAGAACTTTTAGAAGAGCTTAAAAGAGAAGCTGTTAGGCACTTTCCTAGGGCATGGCTTCACGGCCTGGGACAACATATCTATGAAACTTATGGAGATACTTGGGCAGGAGTGGAAGCTCTAATAAGAATTCTGCAACAACTGGTGTTTATTCATTTCAGAATTGGATGTCAGCACAGCAGGATAGGCATTCTTACCCATAGAAGAGCAAGAAATGGAGCCAGTAGATCCTAG -MK115158.1,tat_exon1,5359,5578,5271,5486,forward,0.5416666666666667,MEPVDPRLEPWKHPGSQPRTACTSCYCKKCCYHCPRCFLTKGLGISYGRKKRRQRRRTPQDNQNHQVSLSKQ,MEPVDPRLEPWKHPGSQPRTACTSCYCKKCCYHCPRCFLTKGLGISYGRKKRRQRRRTPQDNQNHQVSLSKQ*,ATGGAGCCAGTAGATCCTAGACTGGAGCCCTGGAAGCATCCAGGGAGTCAGCCTAGGACTGCGTGCACCAGTTGCTATTGTAAAAAGTGTTGCTATCATTGCCCGCGATGCTTCTTAACAAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAACTCCTCAAGATAACCAGAACCATCAAGTTTCTTTATCAAAACAGTGA -MK115158.1,rev_exon1,5498,5579,5410,5486,forward,0.75,MAGRSGDSDEELLKITRTIKFLYQNSE,MAGRSGDSDEELLKITRTIKFLYQNSE,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAACTCCTCAAGATAACCAGAACCATCAAGTTTCTTTATCAAAACAGTGAG -MK115158.1,vpu,5590,5860,5502,5748,forward,0.5308641975308646,MQSLEILAIVALVVAFIIAIVVWSIVLIEYRKIRRQKRIDRILDRIRERAEDSGNESEGDQEELAALVEMGNHAHLGMGHHAPWDVNDL,MQSLEILAIVALVVAFIIAIVVWSIVLIEYRKIRRQKRIDRILDRIRERAEDSGNESEGDQEELAALVEMGNHAHLGMGHHAPWDVNDL*,ATGCAATCCTTAGAAATATTAGCAATAGTAGCATTAGTAGTAGCATTTATAATAGCAATAGTTGTTTGGTCTATAGTACTCATAGAATATAGGAAAATAAGAAGACAAAAGAGAATAGACAGGATACTTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGGGACCAAGAAGAATTGGCAGCCCTCGTGGAGATGGGGAACCATGCTCATTTGGGGATGGGCCACCATGCTCCTTGGGATGTCAATGACCTGTAA -MK115158.1,env,5753,8342,5665,8212,forward,0.5740566037735857,MRVKGTKKNWQPSWRWGTMLIWGWATMLLGMSMTCNAEDSWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVELNVTENFNAWKNNMVDQMHEDIISLWDQSLKPCVKLTPLCVTLNCTELKNSTGEMKNCSFNATTAIRDKVQKQYALFYRLDVVQIKDDNTSYNTRYRLINCNSSTITQACPKVSFEPIPIHYCAPAGFAILKCKDKNFNGTGLCENVSTVQCTHGIRPVVSTQLLLNGSLAEGDVVIRSKNFSNSAQTIIVQLNETVEINCTRPNNNTRKSIHIGPGRAFYATGDIIGDIRQAHCNISRAKWNETLKKIADKLREQFKRETIVFNQSSGGDPEIVMHSFNCRGEFFYCNTTQLFNSTWNSTTGVNGTGANNTEVNIITLPCKIKQIVNMWQEVGKAMYAPPISGQISCSSNITGLLLLRDGGNSNDTDNTTEIFRPGGGDMRDNWRSELYKYKVVQIEPLGVAPTKARRRVVQREKRAVGIGALFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQNNLLRAIEAQQHMLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTNVPWNSSWSNKNLSYIWNNMTWMQWEKEIDNYTEEIYNLIEQSQNQQEKNEQELLELDKWASLWTWFDITKWLWYIKIFIMIVGGLIGLRIVFTVLSIVNRVRQGYSPLSFQTLLPAARGPDRPEGIGEEGGERDRDRSSHLAHGFLTIIWVDLRSLFLFSYHHLRDLLLIVARGVELLGRRGWEALKYWWNLLQYWSQELKNSAVSLLNATAIAVAEGTDRFIEVLQRIFRAIIHIPTRIRQGLERALL,MRVKGTKKNWQPSWRWGTMLIWGWATMLLGMSMTCNAEDSWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVELNVTENFNAWKNNMVDQMHEDIISLWDQSLKPCVKLTPLCVTLNCTELKNSTGEMKNCSFNATTAIRDKVQKQYALFYRLDVVQIKDDNTSYNTRYRLINCNSSTITQACPKVSFEPIPIHYCAPAGFAILKCKDKNFNGTGLCENVSTVQCTHGIRPVVSTQLLLNGSLAEGDVVIRSKNFSNSAQTIIVQLNETVEINCTRPNNNTRKSIHIGPGRAFYATGDIIGDIRQAHCNISRAKWNETLKKIADKLREQFKRETIVFNQSSGGDPEIVMHSFNCRGEFFYCNTTQLFNSTWNSTTGVNGTGANNTEVNIITLPCKIKQIVNMWQEVGKAMYAPPISGQISCSSNITGLLLLRDGGNSNDTDNTTEIFRPGGGDMRDNWRSELYKYKVVQIEPLGVAPTKARRRVVQREKRAVGIGALFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQNNLLRAIEAQQHMLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTNVPWNSSWSNKNLSYIWNNMTWMQWEKEIDNYTEEIYNLIEQSQNQQEKNEQELLELDKWASLWTWFDITKWLWYIKIFIMIVGGLIGLRIVFTVLSIVNRVRQGYSPLSFQTLLPAARGPDRPEGIGEEGGERDRDRSSHLAHGFLTIIWVDLRSLFLFSYHHLRDLLLIVARGVELLGRRGWEALKYWWNLLQYWSQELKNSAVSLLNATAIAVAEGTDRFIEVLQRIFRAIIHIPTRIRQGLERALL*NGRHILKT*,ATGAGAGTGAAGGGGACCAAGAAGAATTGGCAGCCCTCGTGGAGATGGGGAACCATGCTCATTTGGGGATGGGCCACCATGCTCCTTGGGATGTCAATGACCTGTAATGCAGAAGACTCGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAAAGAAGCAACCACCACTCTATTTTGTGCATCAGATGCCAAAGCATATGACACAGAGGTACACAATGTCTGGGCCACACATGCTTGTGTACCCACAGACCCCAACCCACAAGAAGTAGAATTAAATGTGACAGAAAATTTTAATGCATGGAAAAATAACATGGTAGATCAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAACTGCACTGAGTTGAAGAATAGCACTGGAGAAATGAAAAACTGTTCTTTTAATGCCACCACAGCAATAAGAGATAAGGTGCAAAAACAATATGCACTTTTTTATAGACTTGATGTAGTACAAATTAAGGATGATAATACCAGCTATAATACCAGATATAGGTTGATAAATTGTAACTCCTCAACCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAGGATAAGAATTTCAATGGAACAGGACTATGTGAAAATGTTAGCACAGTACAATGTACACATGGAATTAGACCAGTAGTATCAACTCAACTGTTGTTAAATGGCAGTCTAGCAGAAGGAGATGTAGTAATTAGATCTAAAAATTTCTCTAACAGTGCTCAAACCATAATAGTACAATTAAACGAAACTGTAGAAATTAATTGTACAAGACCCAACAATAATACAAGAAAAAGTATACATATAGGACCAGGGAGAGCATTTTATGCAACAGGAGACATAATAGGAGATATAAGACAAGCACATTGTAACATTAGTAGAGCAAAATGGAATGAGACTTTAAAAAAGATAGCTGATAAATTAAGGGAACAATTTAAAAGGGAGACAATAGTCTTTAACCAATCCTCAGGAGGGGACCCAGAGATTGTAATGCACAGTTTTAATTGTAGAGGGGAATTTTTCTACTGTAATACAACACAACTGTTTAATAGTACTTGGAATAGTACTACAGGAGTAAATGGTACAGGAGCAAATAATACAGAAGTAAATATTATCACACTCCCATGCAAGATAAAGCAAATTGTAAACATGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCATCAGTGGACAAATTAGTTGTTCATCAAATATTACAGGGCTACTACTACTAAGAGATGGTGGTAATAGCAATGACACGGATAACACGACTGAAATCTTCAGACCTGGAGGAGGAGATATGAGAGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTACAAATTGAACCATTAGGAGTAGCACCCACCAAGGCAAGGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTCTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCATCAATAACGCTGACGGTACAAGCCAGACAATTATTGTCTGGTATAGTGCAACAGCAGAACAATTTGCTGAGAGCTATTGAGGCGCAACAGCATATGTTGCAGCTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTAGAAAGATACCTTAAGGATCAACAGCTCCTGGGGATTTGGGGTTGCTCTGGAAAACTCATCTGCACCACTAATGTGCCTTGGAATAGTAGTTGGAGTAATAAAAATCTGAGTTATATCTGGAATAACATGACCTGGATGCAGTGGGAAAAAGAAATTGACAATTACACAGAGGAAATATACAACTTAATTGAACAATCGCAAAACCAGCAAGAAAAGAATGAACAAGAATTATTGGAATTGGATAAATGGGCAAGTTTGTGGACTTGGTTTGACATAACAAAGTGGCTGTGGTATATAAAAATATTTATAATGATAGTAGGAGGCTTAATAGGTTTAAGAATAGTTTTTACTGTACTTTCTATAGTGAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCTCCTCCCAGCCGCGAGGGGACCCGACAGGCCCGAAGGAATCGGAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCAGTCACTTAGCGCATGGATTCTTAACAATTATCTGGGTCGACCTGCGGAGCCTGTTCCTCTTCAGCTACCACCACTTGAGAGACTTACTCTTGATTGTAGCGAGGGGAGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAGTATTGGTGGAATCTCCTGCAGTATTGGAGCCAGGAACTAAAGAATAGTGCTGTCAGCTTGCTCAACGCCACAGCCATAGCAGTAGCTGAGGGGACAGATAGGTTTATAGAAGTATTGCAAAGAATTTTTAGAGCTATTATCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCTTTGCTATAAAATGGGAGGCATATTCTCAAAACGTAA -MK115158.1,tat_exon2,7896,7992,7793,7886,forward,0.6935483870967742,RPSSQPRGDPTGPKESEKKVERETETDPVT,RPSSQPRGDPTGPKESEKKVERETETDPVT*R,AGACCCTCCTCCCAGCCGCGAGGGGACCCGACAGGCCCGAAGGAATCGGAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCAGTCACTTAGCGC -MK115158.1,rev_exon2,7897,8173,7794,8070,forward,0.5274725274725274,DPPPSREGTRQARRNRRRRWRERQRQIQSLSAWILNNYLGRPAEPVPLQLPPLERLTLDCSEGSGTSGTQGVGSPQVLVESPAVLEPGTKE,DPPPSREGTRQARRNRRRRWRERQRQIQSLSAWILNNYLGRPAEPVPLQLPPLERLTLDCSEGSGTSGTQGVGSPQVLVESPAVLEPGTKE*,GACCCTCCTCCCAGCCGCGAGGGGACCCGACAGGCCCGAAGGAATCGGAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCAGTCACTTAGCGCATGGATTCTTAACAATTATCTGGGTCGACCTGCGGAGCCTGTTCCTCTTCAGCTACCACCACTTGAGAGACTTACTCTTGATTGTAGCGAGGGGAGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAGTATTGGTGGAATCTCCTGCAGTATTGGAGCCAGGAACTAAAGAATAG -MK115158.1,nef,8316,8994,8213,8834,forward,0.6674757281553398,MGGIFSKRNGGGWPAIRERMRRAQPAADGVGAASRDLERHGALTSNNTPANNADCAWLEAQEEGEEVGFPVRPQVPLRPMTYKGAVDLSHFLKEKGGLEGLIYSQQRQDILDLWVYNTQGYFPDWQNYTPGPGIRYPLTFGWCFKLVPMEPEDVEKATEGEDNILLHPVNQHGMDDSEREVLVWKFDSRLAFRHVAREIHPEYYKNC,MGGIFSKRNGGGWPAIRERMRRAQPAADGVGAASRDLERHGALTSNNTPANNADCAWLEAQEEGEEVGFPVRPQVPLRPMTYKGAVDLSHFLKEKGGLEGLIYSQQRQDILDLWVYNTQGYFPDWQNYTPGPGIRYPLTFGWCFKLVPMEPEDVEKATEGEDNILLHPVNQHGMDDSEREVLVWKFDSRLAFRHVAREIHPEYYKNC*QRAFYKGLSARDFPGEA*,ATGGGAGGCATATTCTCAAAACGTAATGGGGGTGGGTGGCCTGCAATAAGGGAAAGAATGAGACGAGCTCAGCCAGCAGCAGATGGGGTAGGAGCAGCATCTCGAGACCTGGAAAGACATGGAGCTCTCACAAGTAACAATACACCAGCTAACAATGCTGATTGTGCCTGGCTGGAAGCACAGGAAGAGGGGGAAGAAGTGGGTTTCCCAGTCAGACCTCAGGTACCTTTAAGACCAATGACATACAAGGGAGCTGTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGTTAATTTACTCCCAACAAAGACAAGATATCCTTGATCTGTGGGTCTACAACACACAGGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGATAAGATATCCACTGACCTTTGGATGGTGCTTCAAGCTAGTGCCAATGGAACCAGAGGATGTAGAAAAGGCCACTGAAGGAGAGGACAACATCTTGTTACACCCTGTGAACCAGCATGGGATGGACGACTCAGAGAGAGAAGTGTTAGTGTGGAAGTTTGACAGCCGCCTAGCATTCCGTCACGTGGCCCGAGAGATACATCCGGAGTACTACAAGAACTGCTGACAGCGAGCTTTCTACAAGGGACTTTCCGCTAGGGACTTTCCAGGGGAGGCGTGA -MK114705.1,gag,532,2053,789,2292,forward,0.21479999999999988,MGARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNTIAVLYCVHQRIDVKDTKEALNKIEEEQNKSKKKAQQAAADTGNSSQSSQVSQNYPIVQNHQGQMVYQALSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHNPPIPVGEIYKRWIIMGLNKIVRMYSPISILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPSHKARVLAEAMSQATGGATNIMMQKGNFRNQGKPIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCSERQANFLGKIWPSHKGRPGNFLQNRPEPTAPPEESFRFGEETTAPPQKQEPTDKELYPFSSLKSLFGNDPSSQ,MGARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNTIAVLYCVHQRIDVKDTKEALNKIEEEQNKSKKKAQQAAADTGNSSQSSQVSQNYPIVQNHQGQMVYQALSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHNPPIPVGEIYKRWIIMGLNKIVRMYSPISILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPSHKARVLAEAMSQATGGATNIMMQKGNFRNQGKPIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCSERQANFLGKIWPSHKGRPGNFLQNRPEPTAPPEESFRFGEETTAPPQKQEPTDKELYPFSSLKSLFGNDPSSQ*R*,ATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGCGAATTAGATAGATGGGAGAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAAGTTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCGGTTAATCCTGGCCTGTTAGAAACATCAGAGGGCTGTAGGCAAATACTGGGACAGCTACAACCGTCCCTTCAAACAGGATCAGAAGAACTTAAATCATTATTTAATACAATAGCAGTCCTTTATTGCGTACATCAAAGGATAGATGTAAAAGACACCAAGGAAGCTCTAAATAAGATAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGCAGCAGCTGACACAGGAAACAGCAGTCAGAGCAGTCAAGTCAGCCAAAATTACCCTATAGTGCAGAACCATCAGGGGCAAATGGTATATCAGGCTCTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAGAAGGCTTTCAGCCCCGAGGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAGGCAGCCATGCAAATGTTAAAAGAGACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTACATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGGACTACTAGTACCCTTCAGGAACAAATAGGATGGATGACACATAATCCACCTATCCCAGTAGGAGAAATTTATAAAAGATGGATAATCATGGGGTTAAATAAAATAGTAAGAATGTATAGCCCTATCAGCATTCTGGACATAAGACAAGGACCAAAAGAACCTTTTAGAGATTATGTAGACCGGTTCTATAAAACTCTAAGAGCCGAGCAAGCTTCACAAGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAACCCAGATTGTAAGACCATTCTAAAAGCATTAGGACCAGCAGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGGGGACCCAGCCACAAAGCAAGAGTCTTGGCTGAAGCAATGAGCCAAGCAACAGGTGGTGCAACTAACATAATGATGCAGAAAGGCAATTTTAGGAACCAAGGAAAACCTATTAAGTGTTTCAATTGTGGCAAAGAAGGGCACCTAGCTAGAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGACTGCTCTGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGAAGGCCAGGGAATTTCCTCCAGAACAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAACAGCTCCCCCTCAGAAGCAGGAGCCGACAGACAAGGAACTGTATCCCTTCTCTTCCCTCAAATCACTCTTTGGCAACGACCCCTCGTCACAGTAAAGATAG -MK114705.1,pol,1839,4851,2084,5096,forward,0.17248255234297116,FFRENLAFPQGKAREFPPEQTRANSPTRRELQVWGRDNSSPSEAGADRQGTVSLLFPQITLWQRPLVTVKIGGQLKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTKIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDESFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIEQHRAKVENLREHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTEVITLTEEAELELAENREILKEPVHGVYYDPSKDLVAEIQKQGQGQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKIATESIVVWGKIPKFRLPIQKETWETWWMEYWQATWIPEWEFVSTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKKGKAGYVTDRGRQKVIPLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKEKVYLTWVPAHKGIGGNEQVDKLVSAGIRKILFLDGIDKAQEDHEKYHSNWKAMASDFNIPPVVAKEIIASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKIIHTDNGSNFTSTTVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGEYCAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSEIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED,FFRENLAFPQGKAREFPPEQTRANSPTRRELQVWGRDNSSPSEAGADRQGTVSLLFPQITLWQRPLVTVKIGGQLKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTKIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDESFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIEQHRAKVENLREHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTEVITLTEEAELELAENREILKEPVHGVYYDPSKDLVAEIQKQGQGQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKIATESIVVWGKIPKFRLPIQKETWETWWMEYWQATWIPEWEFVSTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKKGKAGYVTDRGRQKVIPLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKEKVYLTWVPAHKGIGGNEQVDKLVSAGIRKILFLDGIDKAQEDHEKYHSNWKAMASDFNIPPVVAKEIIASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKIIHTDNGSNFTSTTVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGEYCAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSEIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGAAGGCCAGGGAATTTCCTCCAGAACAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAACAGCTCCCCCTCAGAAGCAGGAGCCGACAGACAAGGAACTGTATCCCTTCTCTTCCCTCAAATCACTCTTTGGCAACGACCCCTCGTCACAGTAAAGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAAATACCCATAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTAAGATTGGTTGCACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAACCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCCGTATTTGCCATAAAGAAAAAGGATAGTACTAAATGGAGAAAGTTAGTAGATTTCAGAGAGCTTAATAAAAGAACTCAAGACTTTTGGGAGGTTCAATTAGGAATACCACATCCCGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTAGATGTGGGTGATGCATATTTCTCAGTTCCTTTAGATGAAAGCTTCAGAAAGTATACTGCATTTACCATACCTAGTACTAACAATGAGACACCCGGGATTAGGTATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTTCAAAGTAGCATGACGAAAATCTTAGAACCTTTTAGAAAACAAAATCCAGACATAGTTATCTACCAATACATGGATGATTTATACGTAGGATCTGACTTAGAAATAGAGCAGCATAGAGCAAAAGTAGAGAACCTGAGAGAGCATCTGTTGAGGTGGGGATTTACCACACCAGACAAAAAGCATCAGAAAGAACCTCCATTTCTTTGGATGGGCTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTGAATTGGGCAAGTCAGATTTATGCAGGGATTAAAGTAAAGCAATTATGTAAACTCCTTAGGGGAGCTAAGGCACTAACAGAAGTGATAACACTAACAGAAGAAGCAGAGCTAGAATTGGCAGAAAACAGAGAGATTCTAAAAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAGTAGCAGAAATACAGAAGCAGGGGCAAGGTCAATGGACCTATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAGTATGCAAGAACAAGGGGTGCCCACACTAATGATGTAAAACAGTTAACAGAAGCAGTTCAAAAAATAGCCACAGAGAGCATAGTAGTATGGGGAAAGATTCCTAAATTTAGATTACCCATACAGAAAGAAACATGGGAAACATGGTGGATGGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAGTACCCCTCCCTTAGTAAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAGACTAAAAAAGGAAAAGCAGGATATGTTACTGACAGAGGAAGGCAAAAAGTTATCCCCTTAACTGACACAACAAATCAGAAGACTGAGTTACAAGCAATTCATCTAGCTTTGCAGGATTCAGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGACAAGAGTGAATCAGAGTTAGTCAATCAAATAATAGAGCAGTTAATAAAAAAGGAGAAGGTCTACCTGACATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTGCAGGAATCAGGAAAATACTATTTTTGGATGGAATAGATAAGGCCCAGGAAGATCATGAGAAATATCATAGTAATTGGAAAGCAATGGCTAGTGATTTTAACATACCACCTGTGGTAGCAAAAGAGATAATAGCCAGCTGTGATAAATGTCAGCTAAAAGGGGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAACTAGATTGTACACATTTAGAAGGAAAAATTATCCTGGTAGCAGTCCATGTAGCCAGTGGGTACATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTATCTTAAAATTAGCAGGAAGATGGCCAGTAAAAATAATACATACAGATAATGGTAGCAATTTCACCAGCACTACAGTCAAGGCCGCCTGCTGGTGGGCAGGTGTTAAGCAGGAGTTTGGAATTCCCTACAATCCCCAAAGTCAAGGAGTAGTGGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGAGTACTGTGCAGGGGAAAGAATAATAGACATAATAGCAACAGACATACAAACTAAAGAACTACAAAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAGGGACCAGCAAAGCTGCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGAAATCAAAGTAGTACCAAGAAGAAAAGCAAAGATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG -MK114705.1,vif,4795,5383,5040,5619,forward,0.34375,MENRWQVMIVWQVDRMRIRTWKSLVKHHMYISKKAKGWVYRHHYESTHPRISSEVHIPLGDAKLVITTYWGLHTGERDWHLGQGVSIEWRKKRYNTQVDPGLADQLIHMYYFDCFSESAIRQAILGHRVSPSCEYQAGHNKVGSLQYLALAVLVAPKKIKPPLPSVARLTEDRWNKPRKIKGHRESHTMNGH,MENRWQVMIVWQVDRMRIRTWKSLVKHHMYISKKAKGWVYRHHYESTHPRISSEVHIPLGDAKLVITTYWGLHTGERDWHLGQGVSIEWRKKRYNTQVDPGLADQLIHMYYFDCFSESAIRQAILGHRVSPSCEYQAGHNKVGSLQYLALAVLVAPKKIKPPLPSVARLTEDRWNKPRKIKGHRESHTMNGH*NF*,ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAAAAGTCTAGTAAAACACCATATGTATATTTCAAAGAAAGCTAAGGGATGGGTTTACAGACACCACTATGAAAGCACTCATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAAATTGGTAATAACAACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCATTTGGGCCAGGGAGTCTCCATAGAATGGAGGAAAAAGAGATATAACACACAAGTAGACCCTGGCCTAGCAGACCAACTAATTCATATGTACTATTTTGATTGTTTTTCAGAATCTGCTATAAGACAAGCCATATTAGGACATAGAGTTAGTCCTAGTTGTGAATATCAAGCAGGACATAACAAGGTAGGATCTCTGCAATACCTGGCACTAGCAGTATTAGTAGCACCAAAAAAGATAAAGCCACCTTTGCCTAGTGTCGCGAGACTGACAGAGGATAGATGGAACAAGCCCCGGAAGATCAAGGGCCACAGAGAGAGCCATACAATGAATGGGCACTAGAACTTTTAG -MK114705.1,vpr,5313,5601,5558,5850,forward,0.46153846153846234,MEQAPEDQGPQREPYNEWALELLEELKREAVRHFPREWLHSLGQHIYETYGDTWAGVGAIIRILQQLLFIHFRIGCHHSRIGILRRTRNGARRS,MEQAPEDQGPQREPYNEWALELLEELKREAVRHFPREWLHSLGQHIYETYGDTWAGVGAIIRILQQLLFIHFRIGCHHSRIGILRRTRNGARRS*T,ATGGAACAAGCCCCGGAAGATCAAGGGCCACAGAGAGAGCCATACAATGAATGGGCACTAGAACTTTTAGAGGAGCTTAAGAGGGAAGCTGTTAGACATTTTCCTAGGGAATGGCTCCATAGCTTAGGACAACATATCTATGAAACTTATGGGGACACTTGGGCAGGAGTAGGAGCCATAATAAGAATACTGCAACAATTACTGTTTATTCATTTCAGAATTGGGTGTCACCATAGCAGGATAGGCATACTGAGGAGAACAAGAAATGGAGCCCGTAGATCCTAGACT -MK114705.1,tat_exon1,5578,5797,5830,6045,forward,0.6222222222222225,MEPVDPRLEPWKHPGSQPRTPCNNCYCKKCCFHCQVCFTKKGLGISYGRKKRRQRRGPPRDSQIHQVPLPKQ,MEPVDPRLEPWKHPGSQPRTPCNNCYCKKCCFHCQVCFTKKGLGISYGRKKRRQRRGPPRDSQIHQVPLPKQ*,ATGGAGCCCGTAGATCCTAGACTGGAACCCTGGAAGCATCCAGGAAGTCAGCCTAGGACTCCTTGTAACAATTGCTATTGTAAAAAGTGCTGCTTTCATTGCCAAGTTTGCTTCACAAAAAAGGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGCGACAGAGACGAGGACCTCCTCGAGACAGTCAGATTCATCAAGTTCCTCTACCAAAACAGTAA -MK114705.1,rev_exon1,5717,5798,5969,6045,forward,0.8653846153846154,MAGRSGDRDEDLLETVRFIKFLYQNSK,MAGRSGDRDEDLLETVRFIKFLYQNSK,ATGGCAGGAAGAAGCGGCGACAGAGACGAGGACCTCCTCGAGACAGTCAGATTCATCAAGTTCCTCTACCAAAACAGTAAG -MK114705.1,vpu,5809,6055,6061,6310,forward,0.7963414634146342,MQPLEISAIVALVVVAIIAIVVWTIVLLEYRKILRQKKIDRLINRISERAEDSGNESDGDQEELSALMEMGRLAPWNVDDL,MQPLEISAIVALVVVAIIAIVVWTIVLLEYRKILRQKKIDRLINRISERAEDSGNESDGDQEELSALMEMGRLAPWNVDDL*,ATGCAACCTTTAGAGATATCAGCAATAGTAGCATTAGTAGTAGTAGCAATAATAGCAATAGTTGTGTGGACCATAGTACTCTTAGAGTATAGGAAAATATTAAGGCAAAAGAAAATAGACAGATTAATTAATAGAATAAGTGAAAGAGCAGAAGACAGTGGCAATGAGAGTGACGGGGATCAAGAAGAATTGTCAGCTCTTATGGAGATGGGGCGCCTTGCTCCTTGGAATGTTGATGATCTGTAG -MK114705.1,env,5972,8549,6224,8795,forward,0.5660046728971964,MRVTGIKKNCQLLWRWGALLLGMLMICSATNMWVTVYYGVPVWKDATTTLFCASDAKAYDTEIHNVWATHACVPTDPDPQEVVLENVTENYNMGKNNMVEQMHEDIISLWDQSLKPCVLLTPFCVTLNCTDANITSTNNSRDKKEGESTLEETKGEIKNCSFNMTSSMSDKSQKQRALFYKLDVVQIDETNNNSYRLISCNTSVVTQACPKVSFDPIPIHYCAPAGFAILKCNNKKFNGTGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENFTNNAKTIIVQLKTPVQINCTRPNNNTRKRISMGPGRVIYATGQIIGDIRKAHCNISRAEWNTTLKQIVTQLRKQWNRTIIFNSSSGGDPEIVMHSFNCRGEFFYCNTTKLFNSTWPRNSTWNNTEGSNDTEIITLPCRIKQIVNRWQEVGKAMYAPPIQGQISCSSNITGLLLVRDGGINTSESNETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQREKRAVGMLGAMFLGLLGAAGSTMGAASVTLTVQTRLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARLLAVERYLQDQQLLGIWGCSGKLICTTTVPWNTSWSNRSYEDIWNNMTWMEWEKEIDNYTGLIYTLIEKSQNQQEINEQELLSLDKWASLWNWFNITNWLWYIKIFIMIVGGLIGLRIVFAVLSIVNRVRQGYSPLSLQTPRPAPRGPDRPEEIEEGGGERDRDRSVRLVTGFFALFWDDLRSLCLFSYHHLRDLILIVVRVVEILGRRGWEALKYWWNLLQYWSQEIKNSAISLLNATAIAVAEGTDRIIGVVQRTWRAFIHIPRRIRQGFERALL,MRVTGIKKNCQLLWRWGALLLGMLMICSATNMWVTVYYGVPVWKDATTTLFCASDAKAYDTEIHNVWATHACVPTDPDPQEVVLENVTENYNMGKNNMVEQMHEDIISLWDQSLKPCVLLTPFCVTLNCTDANITSTNNSRDKKEGESTLEETKGEIKNCSFNMTSSMSDKSQKQRALFYKLDVVQIDETNNNSYRLISCNTSVVTQACPKVSFDPIPIHYCAPAGFAILKCNNKKFNGTGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENFTNNAKTIIVQLKTPVQINCTRPNNNTRKRISMGPGRVIYATGQIIGDIRKAHCNISRAEWNTTLKQIVTQLRKQWNRTIIFNSSSGGDPEIVMHSFNCRGEFFYCNTTKLFNSTWPRNSTWNNTEGSNDTEIITLPCRIKQIVNRWQEVGKAMYAPPIQGQISCSSNITGLLLVRDGGINTSESNETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQREKRAVGMLGAMFLGLLGAAGSTMGAASVTLTVQTRLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARLLAVERYLQDQQLLGIWGCSGKLICTTTVPWNTSWSNRSYEDIWNNMTWMEWEKEIDNYTGLIYTLIEKSQNQQEINEQELLSLDKWASLWNWFNITNWLWYIKIFIMIVGGLIGLRIVFAVLSIVNRVRQGYSPLSLQTPRPAPRGPDRPEEIEEGGGERDRDRSVRLVTGFFALFWDDLRSLCLFSYHHLRDLILIVVRVVEILGRRGWEALKYWWNLLQYWSQEIKNSAISLLNATAIAVAEGTDRIIGVVQRTWRAFIHIPRRIRQGFERALL*,ATGAGAGTGACGGGGATCAAGAAGAATTGTCAGCTCTTATGGAGATGGGGCGCCTTGCTCCTTGGAATGTTGATGATCTGTAGTGCTACAAACATGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAAAGATGCAACCACCACTCTATTCTGTGCATCAGATGCTAAAGCATATGATACAGAGATACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCGACCCACAAGAAGTAGTACTGGAAAATGTGACAGAAAATTATAATATGGGAAAAAATAACATGGTGGAACAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGCCTAAAGCCATGTGTACTCTTAACCCCATTCTGTGTCACTTTAAATTGCACTGATGCTAACATCACCAGCACTAATAATAGTAGAGATAAGAAGGAAGGAGAAAGTACATTGGAGGAGACGAAAGGAGAAATAAAAAACTGCTCTTTCAATATGACTTCAAGCATGAGCGATAAGTCTCAGAAACAACGTGCACTTTTTTATAAGCTTGATGTGGTACAAATAGATGAGACTAATAATAATAGTTATAGGTTGATAAGTTGTAACACCTCAGTCGTCACACAGGCTTGTCCAAAGGTATCCTTTGATCCAATCCCTATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAATAATAAGAAATTCAATGGAACAGGACCATGTAAAAATGTCAGCACAGTACAATGTACACATGGAATTAAACCTGTAGTGTCAACCCAACTGCTGTTAAATGGTAGTCTAGCAGAAGAAGAAGTAATGATTAGATCTGAAAATTTCACGAACAATGCTAAAACCATAATAGTGCAGCTGAAGACACCTGTACAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGGATAAGTATGGGACCAGGGAGAGTAATTTATGCAACAGGACAAATAATAGGAGATATAAGAAAAGCACATTGCAACATTAGTAGAGCAGAATGGAATACAACTTTAAAGCAGATAGTTACACAATTAAGAAAGCAGTGGAATAGAACCATAATCTTTAACTCATCCTCAGGAGGGGACCCAGAAATTGTGATGCACAGTTTTAATTGTAGAGGGGAATTTTTCTACTGTAATACAACAAAACTATTTAATAGTACTTGGCCACGTAATAGTACTTGGAATAATACTGAAGGGTCAAATGACACTGAAATAATCACACTCCCGTGCAGAATAAAACAAATTGTAAACAGGTGGCAGGAAGTAGGCAAAGCAATGTATGCCCCTCCCATCCAAGGACAAATTAGTTGTTCATCAAATATTACAGGGCTGCTACTAGTTAGAGATGGTGGAATTAACACCAGTGAGAGCAACGAGACCTTCAGACCTGGAGGAGGAGATATGAGGGACAATTGGAGAAGTGAATTATATAAATATAAGGTAGTAAAAATTGAACCATTAGGAGTAGCACCCACCAAGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATGCTGGGAGCTATGTTCCTTGGGCTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGTTGACGGTACAGACCAGACTATTATTGTCTGGTATAGTGCAACAGCAGAACAATCTGCTGAGGGCTATTGAGGCGCAGCAGCATCTGTTGCAACTCACAGTCTGGGGCATCAAACAGCTCCAGGCAAGACTCCTAGCTGTGGAAAGATACCTACAGGATCAACAGCTCCTAGGGATTTGGGGTTGCTCTGGAAAACTCATCTGCACCACTACTGTGCCTTGGAACACTAGTTGGAGTAATAGATCTTATGAAGATATTTGGAACAACATGACCTGGATGGAGTGGGAAAAAGAAATTGACAATTACACAGGCTTAATATACACCTTAATTGAAAAATCGCAGAACCAGCAGGAAATAAATGAACAAGAACTATTGTCATTGGATAAGTGGGCAAGCCTGTGGAATTGGTTTAATATAACAAATTGGCTGTGGTATATAAAAATATTCATAATGATAGTAGGAGGCTTGATAGGTTTAAGAATAGTTTTTGCTGTACTTTCTATAGTGAATAGAGTTAGGCAGGGATACTCACCATTGTCATTGCAGACCCCCCGCCCAGCCCCAAGGGGACCCGACAGGCCCGAAGAAATCGAAGAAGGAGGTGGAGAAAGAGACAGAGACAGATCAGTGCGATTAGTGACTGGATTCTTCGCACTTTTCTGGGACGATCTACGAAGCCTGTGCCTCTTCAGCTACCACCACTTGAGAGACTTAATCTTGATTGTAGTGAGGGTTGTGGAAATTCTGGGACGCAGGGGGTGGGAAGCCCTCAAATATTGGTGGAATCTCCTGCAGTACTGGAGTCAGGAAATAAAGAATAGTGCTATCAGCTTGCTCAACGCCACAGCTATAGCAGTAGCTGAGGGGACAGATAGAATCATAGGAGTAGTACAAAGAACTTGGAGAGCTTTTATCCACATACCTAGGAGAATAAGACAGGGCTTTGAAAGGGCTTTGCTATAA -MK114705.1,tat_exon2,8130,8226,8376,8469,forward,0.9733333333333327,RPPAQPQGDPTGPKKSKKEVEKETETDQCD,RPPAQPQGDPTGPKKSKKEVEKETETDQCD**,AGACCCCCCGCCCAGCCCCAAGGGGACCCGACAGGCCCGAAGAAATCGAAGAAGGAGGTGGAGAAAGAGACAGAGACAGATCAGTGCGATTAGTGA -MK114705.1,rev_exon2,8131,8407,8377,8653,forward,0.5494505494505495,DPPPSPKGTRQARRNRRRRWRKRQRQISAISDWILRTFLGRSTKPVPLQLPPLERLNLDCSEGCGNSGTQGVGSPQILVESPAVLESGNKE,DPPPSPKGTRQARRNRRRRWRKRQRQISAISDWILRTFLGRSTKPVPLQLPPLERLNLDCSEGCGNSGTQGVGSPQILVESPAVLESGNKE*,GACCCCCCGCCCAGCCCCAAGGGGACCCGACAGGCCCGAAGAAATCGAAGAAGGAGGTGGAGAAAGAGACAGAGACAGATCAGTGCGATTAGTGACTGGATTCTTCGCACTTTTCTGGGACGATCTACGAAGCCTGTGCCTCTTCAGCTACCACCACTTGAGAGACTTAATCTTGATTGTAGTGAGGGTTGTGGAAATTCTGGGACGCAGGGGGTGGGAAGCCCTCAAATATTGGTGGAATCTCCTGCAGTACTGGAGTCAGGAAATAAAGAATAG -MK114705.1,nef,8550,9138,8796,9417,forward,0.4593495934959331,MGGKWSKKSGGGWPAVREKMKRTEPAAEGVGAASRDLDKYGAITSSNTAQTNPDCAWLEAQEEEEVGFPVRPQVPLRPMTYKAAVDMSHFLKEKGGLEGLIHSQKRQDILDLWIYHTQGYFPDWQNYTPGPGVRYPLTFGGCFK,MGGKWSKKSGGGWPAVREKMKRTEPAAEGVGAASRDLDKYGAITSSNTAQTNPDCAWLEAQEEEEVGFPVRPQVPLRPMTYKAAVDMSHFLKEKGGLEGLIHSQKRQDILDLWIYHTQGYFPDWQNYTPGPGVRYPLTFGGCFK*CVPVCCVTLVTRDPSDHFSQRGKSLAVAPEQGPESESRTRGDLSTQDSAC*,ATGGGTGGAAAATGGTCAAAAAAGAGTGGGGGTGGATGGCCTGCTGTAAGGGAAAAAATGAAGCGAACTGAGCCAGCAGCAGAGGGGGTGGGAGCAGCATCTCGAGACCTGGACAAATATGGAGCAATCACAAGTAGCAATACAGCACAGACCAATCCTGATTGTGCCTGGCTAGAAGCACAAGAAGAGGAAGAGGTAGGCTTTCCAGTCAGACCCCAGGTACCTTTGAGACCAATGACTTACAAGGCAGCTGTGGATATGAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCACTCCCAAAAGAGACAAGATATCCTTGATCTGTGGATCTATCACACACAAGGCTACTTCCCTGATTGGCAAAATTACACACCAGGGCCAGGGGTCAGATATCCACTGACCTTTGGAGGGTGCTTCAAGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGGTAACTAGAGATCCCTCAGACCATTTTAGTCAGCGTGGAAAATCTCTAGCAGTGGCGCCCGAACAGGGACCTGAAAGCGAAAGTAGAACCAGAGGAGATCTCTCGACGCAGGACTCGGCTTGCTGA -MK114856.1,gag,120,2022,789,2292,forward,1.871000000000001,MTKTLLVQNANPDCKTILKALGPAATLEEMMTACQKVRRPGHKAKVLAEAMSQATGAANIMMQRGNFKNQRKPVKCFNCGKEKHIAKNCKAPKKKGC,MLHISSCFLPVLGLSGWTRSEPGSSLAN*GTHCLSLNKACLECFK*CVPVCCVTLVTRDPSGSNLVQPERPSSSGARTGT*KRK*NQRRSLDAGLGLLKRARQEAKGGDW*VRHF*LAEARRRKIGARASVLSRGELDR*EKIQLRPRRKKKYRLKHIV*ASKELERFAVNPGLLETSGGCKQILEQLQPSLQTRSEELRSLYNTVATLYYVHQKIDVKDTKEALDKVEEEQNKSKKKAQQAAADTRNRGQTSQNFPIVQNLQGQIVHQAISPRTLNA*VKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVSRHQAAMQMLKKVINEEAAE*DRLHPVHARPIAPGQIREPKRSDIARTTSTLQEQIR*MTHNPPIPVRKIYKR*IILGLNKIVKMYSPTSILDIKQRPKEPFRDYVDQFYKTLRAKQATQKVKN*MTKTLLVQNANPDCKTILKALGPAATLEEMMTACQKVRRPGHKAKVLAEAMSQATGAANIMMQRGNFKNQRKPVKCFNCGKEKHIAKNCKAPKKKGC*KYRKERHQMKNCTKRQANFLKKIWPSHKGRPENFPQSRPEIPQSRPEPTAPPAPPEKSFKFEEATTPSQKQETIDKELYPLTSLRSLFGNDPSSQ*,ATGCTGCATATAAGCAGCTGCTTTCTGCCTGTACTGGGTCTCTCTGGTTGGACCAGATCTGAGCCTGGGAGCTCTCTGGCTAACTAGGGAACCCACTGCTTAAGCCTCAATAAAGCTTGCCTTGAGTGTTTCAAGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGGTAACTAGAGATCCCTCAGGCTCAAATCTGGTCCAACCAGAGAGACCCAGTAGCAGTGGCGCCCGAACAGGGACCTGAAAGCGAAAGTAGAACCAGAGAAGATCTCTCGACGCAGGACTCGGCTTGCTGAAGCGCGCACGGCAAGAGGCGAAAGGCGGCGACTGGTGAGTACGCCATTTTTGACTAGCAGAGGCTAGAAGGAGAAAGATAGGTGCGAGAGCGTCAGTATTGAGCAGAGGAGAATTAGATAGATAGGAGAAAATTCAGTTAAGGCCAAGGAGAAAGAAAAAATATAGATTAAAACATATAGTATAGGCAAGCAAGGAACTAGAACGATTCGCAGTTAATCCTGGCCTGTTAGAAACATCAGGAGGCTGTAAACAGATATTAGAACAGCTACAACCATCCCTTCAGACAAGATCAGAAGAACTTAGATCATTATATAATACAGTAGCCACCCTCTATTATGTACATCAAAAGATAGATGTAAAAGACACCAAAGAAGCGTTAGACAAAGTAGAAGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGCGGCAGCTGACACAAGAAACAGAGGCCAGACCAGTCAAAATTTCCCTATAGTGCAGAACCTACAAGGGCAAATAGTACATCAGGCCATATCACCTAGAACTTTAAATGCATAAGTAAAAGTAGTAGAAGAAAAAGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACTATGCTAAACACAGTAAGTAGACACCAAGCAGCTATGCAAATGTTAAAAAAGGTCATCAATGAAGAAGCTGCAGAATAAGATAGATTACATCCAGTGCATGCAAGGCCTATTGCACCAGGCCAGATAAGAGAACCAAAAAGAAGTGACATAGCAAGAACTACTAGTACCCTTCAGGAACAAATAAGATAGATGACACATAATCCACCTATCCCAGTAAGAAAGATTTATAAAAGATAAATAATTCTAGGACTAAATAAAATAGTAAAAATGTATAGCCCTACCAGCATTTTAGACATAAAGCAAAGGCCAAAAGAACCCTTTAGAGACTATGTAGACCAGTTCTATAAAACTTTAAGAGCCAAGCAAGCTACACAGAAAGTAAAAAATTAGATGACAAAAACCTTGTTAGTCCAGAATGCAAATCCAGATTGTAAAACTATTTTAAAAGCATTAGGACCAGCAGCTACACTAGAAGAAATGATGACAGCATGTCAAAAAGTAAGAAGACCCGGCCATAAAGCAAAAGTTTTAGCTGAAGCAATGAGCCAAGCAACAGGTGCAGCCAACATAATGATGCAGAGAGGCAATTTTAAGAACCAAAGAAAGCCTGTTAAATGTTTCAATTGTGGCAAAGAAAAGCACATAGCCAAAAATTGCAAGGCCCCTAAGAAAAAAGGCTGTTAGAAATATAGAAAAGAAAGACACCAAATGAAAAATTGCACTAAGAGACAGGCTAATTTTTTAAAGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGAGAACTTTCCTCAAAGCCGACCAGAAATTCCTCAGAGCAGACCAGAGCCAACAGCCCCACCAGCCCCTCCAGAAAAGAGCTTCAAGTTTGAAGAAGCAACAACTCCCTCTCAGAAGCAGGAGACAATAGACAAGGAGCTGTATCCTCTAACTTCCCTCAGATCACTCTTTGGCAACGACCCATCGTCACAATAA -MK114856.1,pol,1787,4892,2084,5096,forward,2.003988035892324,ASQIYAKIKVKQLCKLLKRTKALTEVVPLTEEAELELAENRKILKDPVHRAYYDPAKDLIAELQKQREGQWTYQIYQKPFKNLKTEKYARTKGAHTNDVKQLTEAVQKISTESIVI,FFKENLAFPQRKARELSSKPTRNSSEQTRANSPTSPSRKELQV*RSNNSLSEAGDNRQGAVSSNFPQITLWQRPIVTIKIREQLKKALLNTGADDTVLEDIDLPRK*KPKMIRRIRSFIKVRQYEQVPIEISRHKAISTVLVGPTPVNIIRRNLLTQLSCTLNFPISPIETVPVKLKPRMDGPKVKQ*PLTEEKIKALVEICTEIEKEKKISKIRPENPYNTPVFAIKKKDGTK*KKLVDFRELNKKTQDF*EIQLSIPHPAKLKKKKSVTVLDVGDAYFSVPLDKDFKKYTAFTIPSINNETPKIRYQYNVLPQR*KRSPAIFQSSMTKILEPFRKTNPDIVIYQYIDDLYVRSDLEIRQHRTKVKELRQHLMR*RFTTPDKKHQKEPPFL*MRYELHPDKWTVQPIVLPEKES*TVNDIQKLVRKLN*ASQIYAKIKVKQLCKLLKRTKALTEVVPLTEEAELELAENRKILKDPVHRAYYDPAKDLIAELQKQREGQWTYQIYQKPFKNLKTEKYARTKGAHTNDVKQLTEAVQKISTESIVI*RRTPKFRLPIQKET*ET*WTDYWQAT*IPK*EFVNTPPLVKL*YQLEKEPIIRAETFYVDKAANKDNKSRKARYVTDRRRQKVVTINDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALKIIQAQPDKSESELVSQIIEQLIKKKKVYLA*VPAHKRIKRNEQVNKLVSARIKKVLFLDKIEKAQEDHKKYHSN*RTMASNFNLPPIVAKEIVASCDKCQLKKEAMHRQVDCSPGIWQLDCTHLEEKIILVAVHVASRYIEAEVIPAETRQETAYFILKLARRWPVKTIHTDNGRNFTSNTVKAAC**AKIKQEFSIPYNPQSQEVVKSINNELKKIIRQVKDQAKHLKTAVQMAVFIHNFKRKGGIEGYSAEERIVDIIATEIQTKELQKQITKIQNFQVYYKDSRDPL*KGPAKLLWKGEKAVVIQDNSDIKVVPRRKAKIIKDYKKQMASDDCVASRQDED*NMEKFSKIPYVYFKESQEIGL*,TTTTTTAAAGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGAGAACTTTCCTCAAAGCCGACCAGAAATTCCTCAGAGCAGACCAGAGCCAACAGCCCCACCAGCCCCTCCAGAAAAGAGCTTCAAGTTTGAAGAAGCAACAACTCCCTCTCAGAAGCAGGAGACAATAGACAAGGAGCTGTATCCTCTAACTTCCCTCAGATCACTCTTTGGCAACGACCCATCGTCACAATAAAGATAAGAGAGCAACTAAAGAAAGCTTTATTAAATACAGGAGCAGATGATACAGTATTAGAAGACATAGATTTGCCAAGAAAATAGAAACCAAAAATGATAAGAAGAATTAGAAGTTTTATCAAAGTAAGACAATATGAACAGGTACCCATAGAAATTAGCAGACACAAAGCTATAAGTACAGTGTTAGTAGGACCTACACCTGTCAACATAATTAGAAGAAATCTGTTGACTCAGCTTAGTTGCACTCTAAATTTTCCCATCAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAAGAATGGACGGCCCAAAAGTTAAACAATAGCCATTAACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATAGAAAAAGAAAAGAAAATTTCAAAAATTAGGCCTGAAAATCCATACAATACTCCAGTGTTTGCCATAAAGAAAAAAGATGGCACTAAATAGAAAAAATTAGTAGATTTCAGAGAACTTAATAAGAAAACTCAAGATTTCTAAGAAATTCAATTAAGTATACCACATCCTGCAAAGCTAAAAAAGAAAAAATCAGTCACAGTACTAGATGTAGGTGATGCATATTTTTCAGTTCCCTTAGATAAAGACTTCAAGAAATATACTGCATTTACCATACCTAGTATAAACAATGAGACACCAAAGATTAGATATCAGTATAATGTGCTTCCACAAAGATAGAAAAGATCACCAGCAATATTCCAAAGTAGCATGACAAAGATCCTAGAGCCTTTTAGAAAGACAAATCCAGACATAGTTATCTATCAATACATAGATGATTTGTATGTAAGATCTGACTTAGAAATAAGGCAACATAGAACAAAAGTAAAGGAACTGAGGCAACATCTAATGAGGTAAAGATTTACCACACCAGACAAAAAGCACCAGAAAGAACCCCCATTCCTTTAGATGAGGTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTACTGCCAGAAAAAGAAAGTTAGACTGTCAATGACATACAGAAGTTAGTAAGAAAATTGAATTAGGCAAGTCAGATTTATGCAAAGATTAAAGTGAAGCAATTATGTAAGCTCCTTAAAAGAACCAAAGCATTAACAGAAGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGAAAGATTCTAAAAGATCCAGTACATAGAGCATATTATGACCCAGCAAAGGACTTAATAGCAGAACTACAGAAGCAAAGAGAAGGTCAGTGGACATATCAAATTTATCAAAAGCCATTTAAAAATCTAAAAACAGAGAAATATGCAAGAACGAAAGGTGCCCATACTAATGATGTAAAGCAATTAACAGAAGCAGTGCAAAAAATATCCACAGAAAGTATAGTAATATAAAGAAGGACTCCTAAATTTAGATTACCCATACAAAAAGAAACATAAGAAACATAGTGGACAGATTATTGGCAAGCCACCTAGATCCCTAAGTAAGAGTTTGTCAACACCCCTCCCTTAGTGAAATTATAGTACCAGTTAGAAAAAGAACCCATAATAAGAGCAGAAACCTTCTATGTAGATAAGGCAGCTAATAAAGATAATAAATCAAGAAAAGCAAGATATGTTACTGACAGAAGAAGACAAAAAGTTGTCACCATAAATGACACAACAAATCAGAAAACTGAATTACAAGCCATTCATCTAGCCTTGCAAGATTCAGGGCTAGAAGTAAACATAGTAACAGACTCACAGTATGCATTAAAGATCATTCAAGCACAACCAGATAAAAGTGAATCAGAGTTAGTCAGTCAAATAATAGAACAGTTAATAAAAAAGAAAAAAGTCTACCTGGCATAAGTGCCAGCCCACAAAAGAATTAAAAGAAATGAACAGGTAAATAAACTAGTCAGTGCTAGAATCAAGAAAGTACTATTTTTAGATAAAATAGAAAAAGCCCAAGAAGACCATAAAAAATATCACAGTAATTAAAGAACAATGGCTAGTAATTTTAACCTACCACCTATAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCTAAAAAAAGAAGCTATGCATAGGCAAGTAGACTGTAGTCCAGGTATATGGCAGCTAGATTGTACACATTTAGAAGAAAAAATTATCCTAGTAGCAGTTCATGTAGCCAGTAGATATATAGAAGCAGAAGTGATTCCAGCAGAGACAAGGCAAGAAACAGCATACTTTATTTTAAAACTAGCAAGAAGATGGCCAGTAAAAACAATACATACAGACAATGGCCGCAATTTCACCAGTAATACAGTGAAGGCCGCCTGTTAGTAGGCAAAAATCAAGCAAGAATTTAGTATTCCCTACAATCCCCAAAGTCAAGAAGTAGTAAAATCTATAAATAATGAATTAAAGAAAATTATAAGACAAGTAAAAGATCAGGCTAAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGAAGGATACAGTGCAGAGGAAAGAATAGTAGACATAATAGCAACAGAAATACAGACTAAAGAATTACAAAAACAAATTACAAAAATTCAAAATTTTCAGGTTTATTACAAGGACAGCAGAGATCCACTTTAGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAAAGGCAGTAGTAATACAAGATAACAGTGACATAAAAGTAGTGCCAAGAAGAAAAGCAAAAATCATTAAGGATTATAAAAAACAGATGGCAAGTGATGATTGTGTGGCAAGTAGACAGGATGAAGATTAGAACATGGAAAAGTTTAGTAAAATACCATATGTATATTTCAAAGAAAGCCAAGAAATAGGCTTATAG -MK114856.1,vif,4791,5349,5040,5619,forward,1.928125,MIVWQVDRMKIRTWKSLVKYHMYISKKAKK,MIVWQVDRMKIRTWKSLVKYHMYISKKAKK*AYRHHYETTHPRISSEVHIPLGGARLVITTY*GLHTGEKDWHLGQGVSIEWRKRRYSTQVDPDLADHLIHVHYFDCFSESAIRNAILGHRVSPRCEYQAGHNKVRSLQYLALTALITPKKIKPPLPSVKKLTEDR*NKPQKTKGHRKSHTMNRH*,ATGATTGTGTGGCAAGTAGACAGGATGAAGATTAGAACATGGAAAAGTTTAGTAAAATACCATATGTATATTTCAAAGAAAGCCAAGAAATAGGCTTATAGACACCATTACGAAACCACTCATCCAAGAATAAGTTCAGAAGTACATATCCCACTAGGAGGTGCTAGATTAGTAATAACAACATATTAAGGTCTGCATACAGGAGAAAAAGACTGGCATTTAGGCCAGGGAGTCTCCATAGAATGGAGAAAAAGGAGATATAGCACACAAGTAGACCCTGACTTAGCAGACCATCTAATTCATGTGCATTATTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACATAGAGTTAGCCCTAGGTGTGAATATCAAGCAGGACATAACAAAGTAAGATCTCTACAATACTTGGCACTAACAGCATTAATAACACCAAAGAAGATAAAGCCACCTTTGCCTAGTGTAAAGAAACTGACAGAAGATAGATAGAACAAGCCCCAGAAGACCAAAGGCCACAGAAAGAGCCATACAATGAATAGACACTAG -MK114856.1,vpr,5033,5582,5558,5850,forward,2.052564102564103,MLFIHFRIKCHHSRIGIVLQRRARNRASRS,MEKKEI*HTSRP*LSRPSNSCALF*LFFRICYKKCHIRT*S*P*V*ISSRT*QSKISTILGTNSINNTKEDKATFA*CKETDRR*IEQAPEDQRPQKEPYNE*TLELLEELKREAVRHFPRPWLQNLRQYIYETYKDTWTRVEAIIRILQQMLFIHFRIKCHHSRIGIVLQRRARNRASRS*T,ATGGAGAAAAAGGAGATATAGCACACAAGTAGACCCTGACTTAGCAGACCATCTAATTCATGTGCATTATTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACATAGAGTTAGCCCTAGGTGTGAATATCAAGCAGGACATAACAAAGTAAGATCTCTACAATACTTGGCACTAACAGCATTAATAACACCAAAGAAGATAAAGCCACCTTTGCCTAGTGTAAAGAAACTGACAGAAGATAGATAGAACAAGCCCCAGAAGACCAAAGGCCACAGAAAGAGCCATACAATGAATAGACACTAGAGCTTTTAGAAGAGCTTAAGAGAGAAGCTGTTAGACATTTCCCTAGACCATGGCTACAAAACCTAAGACAATATATCTATGAAACTTATAAAGATACTTGGACAAGAGTAGAAGCCATAATAAGAATTCTGCAACAAATGCTGTTTATTCATTTCAGAATTAAGTGTCACCATAGCAGAATAGGCATTGTTCTGCAAAGAAGAGCAAGAAATAGAGCCAGTAGATCATAGACT -MK114856.1,tat_exon1,5427,5775,5830,6045,forward,2.1097222222222225,MKLIKILGQE,MKLIKILGQE*KP**EFCNKCCLFISELSVTIAE*ALFCKEEQEIEPVDHRLEP*KHPGSQPRTPCTNCYCKKCCFHCQVCFIQKALGISYGRKKRRQRRRSPQDSQTHQVPLPKQ,ATGAAACTTATAAAGATACTTGGACAAGAGTAGAAGCCATAATAAGAATTCTGCAACAAATGCTGTTTATTCATTTCAGAATTAAGTGTCACCATAGCAGAATAGGCATTGTTCTGCAAAGAAGAGCAAGAAATAGAGCCAGTAGATCATAGACTAGAGCCCTAGAAGCATCCAGGAAGTCAGCCTAGGACTCCTTGTACCAATTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTGTGTTTTATACAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGAGACGAAGATCTCCTCAAGACAGTCAGACTCATCAAGTTCCTCTACCAAAGCAG -MK114856.1,rev_exon1,5698,5776,5969,6045,forward,0.6923076923076923,MAGRSGDRDEDLLKTVRLIKFLYQSS,MAGRSGDRDEDLLKTVRLIKFLYQSS,ATGGCAGGAAGAAGCGGAGACAGAGACGAAGATCTCCTCAAGACAGTCAGACTCATCAAGTTCCTCTACCAAAGCAGT -MK114856.1,vpu,5790,6039,6061,6310,forward,1.3926829268292686,TIVGIKYKKILRQRKIDRIINRIRKRAEDSGNESEKDQEELSALVVEIRHDAP,MQPLKILAIVALVVAAIIAIVV*TIVGIKYKKILRQRKIDRIINRIRKRAEDSGNESEKDQEELSALVVEIRHDAP*DVDDL*,ATGCAACCTTTAAAGATATTAGCAATAGTAGCATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTAGACCATAGTAGGCATAAAATATAAGAAAATATTAAGACAAAGAAAAATAGATAGAATAATTAATAGAATAAGAAAAAGAGCAGAAGACAGTGGCAATGAGAGCGAAAAAGATCAGGAAGAATTGTCAGCACTTGTAGTAGAAATAAGGCACGATGCTCCTTAAGATGTTGATGATCTGTAG -MK114856.1,env,5953,8557,6224,8795,forward,1.8896028037383144,MTNCSFNITTEIRDKVRKEYALFYKLDVMPIDKDNTSYTLINCNTSVITQACPKVTFEPIPIHYCTPASFAILKCKDEMFNRTRPCKNVSTVQCTHRIRPVVSTQLLLNSSLAEKKIVLRSENFTDNTKNIIVQLNRSIVINCTRPNNNTRKSISVAKRAIYATRQIIEDIRQAHCNISETD,MRAKKIRKNCQHL**K*GTMLLKMLMICSAAENL*VTVYYEVPV*RDANTTLFCASDAKAYDTEVHNV*ATHACVPTDPNPHEVELKNVTENFNM*KNNMVDQMHEDIINL*DQSLKPCAKLTPLCVTLNCTDLKNNTVGNQTNYHLNETNTIQRKEMTNCSFNITTEIRDKVRKEYALFYKLDVMPIDKDNTSYTLINCNTSVITQACPKVTFEPIPIHYCTPASFAILKCKDEMFNRTRPCKNVSTVQCTHRIRPVVSTQLLLNSSLAEKKIVLRSENFTDNTKNIIVQLNRSIVINCTRPNNNTRKSISVAKRAIYATRQIIEDIRQAHCNISETD*SDTLSKIVEKLKEKFRKNKTIIFKQSSREDIEIETHSFNCREEFFYCNTTRLFNST*SVNRTSINRTNNKNITLPCRIKQIINRWQEVRKAMYAPPISKIIRCSSNITGLILTRDSSTTNSKEETFRPRERNMKDN*RSELYKYKVVKIEPLKVAPTKAQRKVVQREKRAIRTLGAMFLRFLRTAGSTIGAASLTLTVQARQLLSGIVQQQNNLLKAIEAQQHMLQLTV*GIKQLQARVLSVERYLQDQQLLKI*SCSRKLICTTTVP*NTS*SNKSYSTI*DNMT*MQ*DREIQNYTKIIYNLLKESQIQQKKNEKELLELDQ*ANL*N*FSITKWL*YIKIFIMIVGGLVSLKIIFAVFSIVNRVRQGYSPLSLQTLLPTPRRPDRPERIEEEGEKRDRGRSRRLVTRFLPLI*DDLQSLCLFSYHHLKDLLLIVLKTVQILGHKK*EILKY**SLLQY*IQELKNSAVSLLNTIAIAVAERTDKVIEVRQKISRAFLHIPRKIRQGLEKALQ*NKWQVVKKLYG*,ATGAGAGCGAAAAAGATCAGGAAGAATTGTCAGCACTTGTAGTAGAAATAAGGCACGATGCTCCTTAAGATGTTGATGATCTGTAGTGCTGCGGAAAATTTGTAAGTCACAGTCTATTATGAGGTACCTGTGTAAAGAGATGCAAATACCACTCTATTCTGTGCATCAGATGCTAAAGCATATGATACAGAAGTACATAATGTTTAGGCCACACATGCCTGTGTACCCACAGACCCTAACCCACATGAAGTAGAATTGAAAAATGTGACAGAAAATTTTAATATGTAGAAAAATAACATGGTAGACCAGATGCATGAGGATATAATCAATTTATGAGATCAAAGCCTAAAGCCATGTGCAAAATTGACCCCACTCTGTGTTACTTTAAATTGCACTGATTTAAAAAATAATACTGTAGGAAATCAAACAAATTATCATCTCAATGAAACTAATACAATACAAAGAAAAGAAATGACAAACTGCTCTTTCAATATCACCACAGAGATAAGAGATAAAGTGCGAAAAGAATATGCACTTTTTTATAAACTTGATGTCATGCCAATAGATAAAGATAATACAAGTTATACATTGATAAATTGCAATACCTCAGTCATTACACAGGCCTGTCCAAAGGTAACCTTTGAACCAATTCCCATACATTATTGTACTCCAGCTAGTTTTGCAATTCTAAAGTGTAAAGATGAGATGTTCAATAGAACAAGACCATGTAAGAATGTCAGCACAGTACAATGTACACATAGAATTAGACCAGTAGTGTCAACTCAACTGCTGTTAAATAGTAGCCTAGCAGAAAAAAAGATAGTACTTAGATCTGAAAATTTCACAGACAATACTAAAAATATAATAGTACAGCTAAATAGATCTATAGTAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAGTGTAGCAAAGAGAGCAATTTATGCAACAAGACAGATAATAGAAGATATAAGACAAGCACATTGTAACATCAGTGAGACAGATTGAAGTGACACTTTAAGCAAAATAGTTGAAAAATTAAAGGAAAAATTTAGAAAAAATAAAACAATAATCTTTAAGCAATCATCAAGAGAGGACATAGAAATTGAAACGCACAGTTTTAATTGTAGAGAGGAATTTTTCTACTGTAACACAACACGACTGTTTAATAGTACTTGAAGTGTTAATAGAACTAGCATAAACAGAACTAACAATAAAAATATCACACTCCCGTGCAGAATAAAACAAATTATCAACAGGTGGCAGGAAGTAAGAAAAGCAATGTATGCCCCTCCTATCAGTAAGATAATTAGGTGCTCATCAAATATTACAGGACTAATATTAACAAGAGATAGTAGTACAACTAATAGTAAAGAAGAGACCTTCAGACCTAGAGAAAGAAATATGAAGGACAATTAGAGAAGTGAATTATATAAATACAAAGTAGTAAAAATTGAGCCATTAAAAGTAGCACCCACCAAGGCACAAAGAAAAGTAGTGCAGAGAGAAAAAAGAGCAATAAGAACGTTAGGAGCTATGTTCCTCAGGTTCTTAAGAACAGCAGGAAGCACTATAGGCGCAGCGTCACTGACGCTGACAGTACAAGCCAGACAATTATTGTCTGGTATAGTGCAACAGCAGAACAATCTGCTGAAGGCTATTGAGGCGCAACAGCATATGTTGCAACTCACAGTCTAAGGCATCAAACAGCTCCAGGCAAGAGTCCTGTCTGTAGAAAGATACCTACAAGATCAACAGCTCCTGAAGATTTGAAGTTGCTCTAGAAAACTCATTTGCACCACTACTGTGCCTTAGAATACTAGTTAGAGCAATAAATCTTACAGTACCATCTAAGATAACATGACCTAGATGCAGTAGGACAGAGAAATTCAAAATTACACAAAGATAATATACAACTTACTTAAAGAATCGCAAATCCAACAGAAAAAGAATGAAAAAGAATTATTAGAACTAGATCAATGAGCAAATTTGTAGAATTAGTTTAGTATAACAAAATGGCTATAGTATATAAAAATATTCATAATGATAGTAGGAGGCTTAGTAAGTTTAAAAATAATTTTTGCTGTATTTTCTATAGTGAATAGAGTTAGGCAAGGATACTCACCATTATCATTGCAGACCCTCCTCCCAACCCCAAGAAGACCAGACAGGCCCGAAAGAATAGAAGAAGAAGGTGAAAAGAGAGACAGAGGCAGATCCAGAAGATTAGTGACTAGATTCTTACCACTCATCTAAGACGACCTGCAAAGCCTGTGCCTTTTCAGCTACCACCACTTAAAAGACTTACTCTTGATTGTGCTGAAGACTGTGCAAATTCTAGGACACAAGAAGTAAGAGATCCTCAAGTACTAGTAGAGTCTCCTGCAGTATTAAATTCAGGAACTAAAGAATAGTGCTGTTAGCTTGCTCAATACCATAGCTATCGCAGTAGCTGAAAGAACAGATAAAGTTATAGAAGTAAGACAAAAAATTAGCAGAGCTTTTCTCCACATACCTAGAAAGATAAGACAAGGCTTAGAAAAGGCTTTGCAATAAAATAAGTGGCAAGTAGTCAAAAAGTTGTATGGCTAG -MK114856.1,tat_exon2,8102,8198,8376,8469,forward,0.8,RPSSQPQEDQTGPKE,RPSSQPQEDQTGPKE*KKKVKRETEADPED**,AGACCCTCCTCCCAACCCCAAGAAGACCAGACAGGCCCGAAAGAATAGAAGAAGAAGGTGAAAAGAGAGACAGAGGCAGATCCAGAAGATTAGTGA -MK114856.1,rev_exon2,8103,8379,8377,8653,forward,1.3725274725274725,ILTTHLRRPAKPVPFQLPPLKRLTLDCAEDCANSRTQEVRDPQVLVESPAVLNSGTKE,DPPPNPKKTRQARKNRRRR*KERQRQIQKISD*ILTTHLRRPAKPVPFQLPPLKRLTLDCAEDCANSRTQEVRDPQVLVESPAVLNSGTKE*,GACCCTCCTCCCAACCCCAAGAAGACCAGACAGGCCCGAAAGAATAGAAGAAGAAGGTGAAAAGAGAGACAGAGGCAGATCCAGAAGATTAGTGACTAGATTCTTACCACTCATCTAAGACGACCTGCAAAGCCTGTGCCTTTTCAGCTACCACCACTTAAAAGACTTACTCTTGATTGTGCTGAAGACTGTGCAAATTCTAGGACACAAGAAGTAAGAGATCCTCAAGTACTAGTAGAGTCTCCTGCAGTATTAAATTCAGGAACTAAAGAATAG -MK114856.1,nef,8549,9176,8796,9417,forward,2.0414634146341464,MSLHRMEDSEGEVLMWKFDSSLAFHHRAREQHPEYYKDC,MAR*PAVKERIERVNPRPAAKKEQAEPAAAKVRAASRDLEKYRAITSSNTSTTNAACA*LEAQEEEEVGFPVRPQVPLRPMTYKAALNLSHFLKEKGGLEGLI*SQRRQEILDLWVYHTQGYFPDWQNYTPGPGVRNPLTFGWCFKLVPVDPDQVEKANEGENNCLLHPMSLHRMEDSEGEVLMWKFDSSLAFHHRAREQHPEYYKDC*,ATGGCTAGATAGCCTGCTGTAAAAGAAAGAATAGAAAGAGTTAATCCAAGGCCTGCTGCAAAGAAAGAACAAGCTGAGCCAGCAGCAGCTAAGGTAAGAGCAGCATCTCGAGACTTAGAAAAATATAGAGCAATCACAAGTAGCAATACATCAACTACTAATGCTGCTTGTGCCTAGCTAGAAGCACAAGAGGAAGAAGAAGTAGGCTTTCCAGTCAGACCTCAAGTACCTTTAAGACCAATGACTTACAAAGCAGCTTTAAATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTAGTCCCAGAGAAGACAAGAAATCCTTGATTTGTGGGTTTACCACACACAAGGATACTTCCCTGATTGGCAAAACTACACACCAGGACCAGGGGTCAGAAATCCACTGACCTTTGGATGGTGCTTCAAGCTAGTACCAGTTGATCCAGACCAAGTAGAGAAGGCCAATGAAGGAGAGAACAACTGCTTGCTACACCCTATGAGCCTGCATAGGATGGAAGACTCAGAGGGAGAAGTGTTAATGTGGAAGTTTGACAGCAGCCTGGCGTTTCATCATAGAGCCCGAGAACAACATCCGGAGTACTACAAAGACTGCTGA -MK115009.1,gag,302,1715,789,2292,forward,1.8444000000000005,MTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVRGPGHKARVLAEAMSQVTKSASIIVQGGNFKNQRKNVKCFNCGKERHTAKNCRAPKKKGC,MGARASVLSGGKLDR*EKIYLRPEGKKKYRLKHIV*ASRELERFAVNPGLLESSEGCRQILGQLQPALQTGSEELRSLYNTVAVLYCVHQRINVKDTKEALDKIEEEQNKSKKKAQQAAADTGNSSNSQVSQNYPIVQNLQGQIVHQPLSPRTLNA*VKVIEEKAFSPEVIPMFSALSERATPQDLNTMLNTVRGHQAAMQMLKETINDEAAE*DRLHPVHAGPIAPGQMKEPRGSDIAGTTSTLQEQIR*MTHNPPIPVGEIYKRWIILRLNKIVRMYSPVSILDIRQRPKEPFKDYVDRFYKTLKAEQASQDVKN*MTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVRGPGHKARVLAEAMSQVTKSASIIVQGGNFKNQRKNVKCFNCGKERHTAKNCRAPKKKGC*KCRKERHQMKDCTKRPD*DG*FFKEDLAFPQGKAREFSPEQTRANSPASRELQV*,ATGGGTGCTAGAGCGTCAGTATTAAGCGGCGGAAAATTAGATAGATAGGAAAAAATTTACCTAAGGCCAGAAGGAAAGAAAAAATATAGATTAAAACATATAGTATAGGCAAGCAGGGAGCTAGAACGATTCGCAGTCAACCCTGGCCTGTTAGAGTCATCAGAAGGCTGCAGGCAAATTCTAGGACAGCTACAACCAGCCCTTCAGACAGGATCAGAAGAACTTAGATCATTATATAATACAGTAGCAGTCCTCTATTGCGTACATCAAAGGATAAATGTAAAAGACACCAAGGAAGCTCTAGACAAAATAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAACAAGCAGCAGCTGACACAGGAAACAGCAGCAACAGCCAGGTCAGCCAAAATTACCCTATAGTGCAGAACCTACAGGGGCAAATAGTACATCAACCATTATCACCTAGAACTTTAAATGCATAGGTAAAAGTAATAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCACTATCAGAAAGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGAGAGGACATCAAGCAGCCATGCAGATGTTAAAAGAAACCATCAATGATGAGGCTGCAGAATAGGATAGATTGCATCCAGTGCATGCAGGCCCTATTGCACCAGGCCAGATGAAAGAACCAAGAGGAAGTGACATAGCAGGAACCACTAGTACCCTTCAGGAACAAATAAGATAGATGACACATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCCTAAGGCTAAACAAAATAGTAAGAATGTATAGCCCTGTCAGCATTTTGGACATAAGACAAAGACCAAAAGAACCCTTTAAAGATTATGTAGACCGATTCTATAAAACTCTAAAGGCTGAGCAAGCGTCACAGGATGTAAAAAATTAGATGACAGAAACCTTGTTAGTCCAAAATGCGAATCCAGATTGTAAGACCATTTTAAAAGCATTAGGACCAGCAGCTACATTAGAAGAAATGATGACAGCATGTCAGGGAGTAAGAGGACCCGGCCACAAGGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAACAAAGTCAGCCTCCATAATAGTGCAAGGAGGCAATTTTAAGAACCAAAGAAAGAATGTTAAGTGTTTCAATTGTGGCAAAGAAAGACACACAGCCAAAAATTGCAGGGCCCCTAAGAAAAAAGGCTGTTAAAAATGTAGAAAGGAAAGACACCAAATGAAAGATTGTACTAAGAGACCAGACTAAGACGGCTAATTTTTTAAGGAAGATTTGGCCTTCCCACAAGGGAAGGCCAGAGAATTTTCTCCAGAGCAGACCAGAGCCAACAGCCCCGCCAGCAGAGAGCTTCAGGTTTGA -MK115009.1,pol,1613,4703,2084,5096,forward,1.89531405782652,AEIKQEFSIPYNPQSQRVVKSMNNKLKKIIGQVKDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFQVYYRDSREPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKILRDYRKQMAGDDCVASRQDED,FFKEDLAFPQGKAREFSPEQTRANSPASRELQV*GRGNSSSSEAGDERPRTVSFSFPQITLWQRPIISIKIGGQLKEALLDTGADDTVLEEINLPGK*KPKMIKRIRSFIKVRQYDQVPIEICGHKAIGTVLIGPTPVNIIRRNLLTQLSCTLNFPISPIETVPVKLKSGIDSPRVKQWPLTEEKIKALIEICAEIEKEKKITKIRPENPYNTPVFAIKKKDSTK*KKLVDFRELNKRTQDF*EVQLRIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNEAPEVKYQYNVLPQR*KRSPAIFQSSMTKILEPFRKENPDIVIYQYIDDLYVRSDLEIEQHRTKIEELRQHLLR*GLTTPDKKHQKKPPFL*ISYELHPDK*TVQPIQLPDKDS*TVNDIQKLVRKLN*ASQIYPEIKVKQLCKLLRGTKALTEVVPLTEEAELELAENREILKEPVHGAYYDPSKDLIAEVQKQRRDQ*TYQIYQEPFKNLKTEKYARTRGAHTNDVKQLTEAVQKIALEAIVI*RKTPKFKLPIQKET*KMWWTKYWQAT*IPE*EFVNTPPLVKL*YQLEKEPIVRAETFYVNKAANRKTKLRKAEYVTDRRRQKVVSLIDTTNQRTKLHAIHLALQDSGSTVNIVTDSQYALKIIQAQPDKSESELVSQIIEQLIKKEKIYLA*VPAHKRIEGNEQVDKLVSNRIRRVLFLDRIDKAQEEHEKYHSN*RAMASNFNLPPVVAKEIVASCDKCQLKGEPMHRQVDCSPGIWQLDCTHLERKIILVAVHVASRYIEAEVIAAETGQETAYFILKLAGR*PVKIIHTDNGSNFTSTTVKAAC**AEIKQEFSIPYNPQSQRVVKSMNNKLKKIIGQVKDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFQVYYRDSREPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKILRDYRKQMAGDDCVASRQDED*NIEQFSKTPYAYFKESSEIGLQTSL*,TTTTTTAAGGAAGATTTGGCCTTCCCACAAGGGAAGGCCAGAGAATTTTCTCCAGAGCAGACCAGAGCCAACAGCCCCGCCAGCAGAGAGCTTCAGGTTTGAGGAAGAGGCAACAGCTCCTCCTCAGAAGCAGGAGACGAAAGACCAAGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCATAATATCAATAAAAATAGGAGGGCAACTAAAAGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATAAATTTGCCAGGAAAATAGAAACCAAAAATGATAAAAAGAATTAGAAGTTTTATCAAAGTAAGACAGTATGATCAGGTACCCATAGAAATTTGTGGACATAAAGCTATAGGTACAGTATTAATAGGACCTACGCCAGTCAACATAATTAGAAGAAATCTGTTGACCCAGCTTAGTTGCACTTTAAATTTTCCCATCAGTCCTATTGAAACTGTACCAGTAAAATTAAAGTCAGGAATAGATAGCCCAAGAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAGGCATTAATAGAAATTTGTGCAGAAATAGAAAAGGAAAAGAAAATTACAAAAATTAGGCCTGAGAATCCATATAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGAAAAAAATTAGTAGATTTCCGAGAACTTAATAAGAGAACACAAGACTTCTAAGAAGTTCAACTAAGAATACCACATCCCGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTAGATGTAGGTGATGCATATTTTTCAGTTCCTTTAGACAAAGACTTCAGAAAGTATACTGCATTTACCATACCCAGTATAAACAATGAGGCACCAGAAGTTAAATATCAGTACAATGTGCTTCCACAGAGATAGAAAAGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGGAAAATCCAGACATAGTTATCTATCAATACATAGATGATTTGTATGTAAGATCTGACTTAGAAATAGAGCAGCACAGAACAAAAATAGAAGAACTGAGACAACATCTGTTAAGGTGAGGACTCACCACACCAGACAAGAAACATCAGAAAAAACCTCCATTTCTTTAGATAAGTTATGAACTCCATCCTGATAAATAGACAGTACAGCCTATACAGCTGCCAGACAAAGACAGCTAGACTGTCAATGACATACAGAAGTTAGTAAGAAAGTTGAATTAGGCAAGCCAGATCTATCCAGAGATTAAAGTAAAGCAATTATGTAAACTCCTTAGAGGAACCAAAGCACTAACAGAAGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGAGAGATTCTAAAAGAACCAGTACATGGAGCATATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGAGGAGAGACCAATAGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGAGAAATATGCAAGAACGAGAGGTGCCCACACTAATGATGTAAAACAGTTAACAGAGGCAGTGCAAAAAATAGCCCTAGAAGCCATAGTAATATGAAGAAAGACTCCTAAATTTAAACTACCTATACAAAAAGAAACATAGAAAATGTGGTGGACAAAGTATTGGCAAGCCACCTAGATTCCTGAGTAAGAATTTGTCAATACCCCTCCCTTAGTAAAACTATAGTACCAGTTAGAGAAAGAACCCATAGTAAGAGCAGAAACTTTCTATGTAAATAAGGCAGCTAATAGAAAGACTAAATTAAGAAAAGCAGAGTATGTTACGGACAGAAGAAGACAAAAGGTTGTCTCCCTAATAGACACAACAAATCAGAGGACTAAGTTACACGCAATTCATCTAGCTTTGCAGGATTCAGGATCAACAGTAAACATAGTGACAGACTCACAATATGCCTTAAAGATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAGTCAAATAATAGAGCAGCTAATAAAAAAAGAAAAGATTTACCTGGCATAAGTCCCAGCACACAAAAGAATTGAAGGAAATGAACAAGTAGATAAATTAGTCAGTAATAGAATCAGAAGAGTACTATTTCTAGATAGAATAGATAAAGCCCAAGAAGAACATGAAAAATATCACAGTAATTAGAGAGCAATGGCTAGTAATTTTAACCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAGTGTCAGTTAAAAGGAGAACCTATGCATAGACAAGTAGACTGTAGTCCAGGAATATGGCAACTAGATTGTACACATTTAGAAAGAAAAATTATCCTAGTAGCAGTTCATGTAGCCAGTAGATACATAGAAGCAGAAGTTATTGCAGCAGAAACAGGGCAGGAAACAGCATACTTTATCTTAAAATTAGCAGGAAGATAGCCAGTAAAAATAATACATACAGACAATGGCAGCAATTTCACCAGCACTACAGTTAAAGCCGCCTGTTAGTAGGCAGAGATCAAGCAGGAATTTAGTATTCCCTACAATCCTCAAAGTCAAAGAGTAGTAAAATCTATGAATAATAAATTAAAGAAAATTATAGGACAGGTAAAAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATTCATAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAATAGACATAATAGCAACAGACATACAAACTAAAGAACTACAAAAACAAATTTCAAAAATTCAAAATTTTCAGGTTTATTACAGGGACAGCAGAGAACCACTTTGGAAAGGACCAGCAAAGCTCCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATCCTTAGAGATTATAGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATAGAACAGTTTAGTAAAACACCATATGCATATTTCAAAGAAAGCTCAGAGATAGGTTTACAGACATCACTATGA -MK115009.1,vif,4590,5148,5040,5619,forward,2.064583333333333,MIVWQVDRMRIRT,MIVWQVDRMRIRT*NSLVKHHMHISKKAQR*VYRHHYESHNPKTSSEVHIPLEEARLVIKTY*GLHTGERDWHLGQGVSIEWRKRRYSTQVDPGLADQLIHLYYFDCFSESAIRNAILGHRVSPRCEYQAGHNKVGSLQYLALTALITPKRRKPPLPSVTKLTEDRWNKSQRTKGHKRSHTINGH*,ATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATAGAACAGTTTAGTAAAACACCATATGCATATTTCAAAGAAAGCTCAGAGATAGGTTTACAGACATCACTATGAAAGCCATAATCCAAAAACAAGTTCAGAAGTACACATCCCATTAGAGGAAGCAAGATTGGTAATAAAAACATATTAAGGTCTGCATACAGGAGAAAGAGACTGGCATTTAGGCCAGGGAGTATCCATAGAATGGAGGAAAAGGAGATATAGCACACAAGTAGACCCTGGCCTGGCAGACCAACTAATTCACCTGTATTATTTTGATTGTTTTTCAGAATCTGCTATAAGGAATGCCATATTAGGACATAGAGTTAGTCCTAGGTGTGAATATCAGGCAGGACATAACAAGGTAGGATCCCTACAATACTTGGCATTAACAGCATTAATAACACCAAAAAGGAGAAAGCCACCTTTGCCCAGTGTTACAAAATTAACAGAGGACAGATGGAACAAGTCCCAGAGGACCAAAGGCCACAAAAGGAGCCATACAATAAATGGACATTAG -MK115009.1,vpr,5087,5381,5558,5850,forward,1.0679487179487188,MEQVPEDQRPQKEPYNKWTLELLEELKSEAVRHFPRPWLHSLGQYIYETYGDT,MEQVPEDQRPQKEPYNKWTLELLEELKSEAVRHFPRPWLHSLGQYIYETYGDT*AEVEAIIRTLQQLLFIHFRIRCQHSRIGIIRQRRARNRASRS*L,ATGGAACAAGTCCCAGAGGACCAAAGGCCACAAAAGGAGCCATACAATAAATGGACATTAGAGCTCTTAGAAGAGCTTAAGAGTGAAGCTGTTAGGCATTTTCCTAGACCATGGCTTCATAGCTTAGGACAATATATCTATGAAACTTATGGAGATACTTAGGCAGAGGTAGAAGCCATAATAAGAACCCTGCAACAACTGTTGTTCATTCATTTCAGAATTAGGTGTCAACATAGCAGGATAGGAATTATTCGACAGAGGAGAGCAAGAAATAGAGCCAGTAGATCCTAGCTT -MK115009.1,tat_exon1,5412,5574,5830,6045,forward,1.0958333333333334,MTACNNCYCKRCCFHCQVCFTTKSLGISYGRKKQRQRRRASHSSQNHQAALPEQ,MTACNNCYCKRCCFHCQVCFTTKSLGISYGRKKQRQRRRASHSSQNHQAALPEQ,ATGACTGCTTGTAACAATTGCTATTGTAAACGGTGTTGCTTTCATTGCCAAGTTTGCTTCACAACAAAAAGCTTAGGCATCTCCTATGGCAGGAAGAAGCAGAGACAGCGACGAAGAGCTTCTCACAGCAGTCAGAATCATCAAGCGGCTCTACCAGAGCAG -MK115009.1,rev_exon1,5497,5575,5969,6045,forward,0.7692307692307692,MAGRSRDSDEELLTAVRIIKRLYQSS,MAGRSRDSDEELLTAVRIIKRLYQSS,ATGGCAGGAAGAAGCAGAGACAGCGACGAAGAGCTTCTCACAGCAGTCAGAATCATCAAGCGGCTCTACCAGAGCAGT -MK115009.1,vpu,5589,5835,6061,6310,forward,0.9975609756097563,MHALEIAAIAGLVVAAIIAIVVWSIVLIEYKKILRQRKIDRLINRIRERAEDSGNESDEDQEELSALVEMRHLVP,MHALEIAAIAGLVVAAIIAIVVWSIVLIEYKKILRQRKIDRLINRIRERAEDSGNESDEDQEELSALVEMRHLVP*DSNDM*,ATGCATGCCTTAGAAATAGCAGCAATAGCAGGATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGTCTATAGTATTAATAGAATATAAGAAAATTTTAAGACAAAGGAAAATAGACAGGTTAATTAATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGACGAGGACCAAGAGGAATTATCCGCACTTGTGGAGATGAGGCATCTTGTTCCTTAAGATAGTAATGATATGTAG -MK115009.1,env,5752,8353,6224,8795,forward,1.878154205607472,MKEKGEIKNCSFNVTTGIRDKVTKEHALFYKLNVVPIDEDSKNTTGKYKMINCNTSVITQACPKVSFKPIPIHFCAPASFAILKCKDKKFNRTGECRNVSTVQCTHRIRPVVSTQLLLNGSLAEEKIVIRSANLSNNAKTIIVQLNKSVKINCTRPNNNTRRSIHIGPGRAFYRTDIIRDIRQAHYNISKKD,MRVTRTKRNYPHLWR*GILFLKIVMICSANNL*VTVYYKVPV*KEATTTLFCASDAKAYETEKHNV*ATHACVPTDPSPQEVALENVTETFNM*KNDMVEQMHEDIISL*DQSLKPCVKLTPLCVTLNCTDNLNLTCPNNNTCSNNTNYNMKEKGEIKNCSFNVTTGIRDKVTKEHALFYKLNVVPIDEDSKNTTGKYKMINCNTSVITQACPKVSFKPIPIHFCAPASFAILKCKDKKFNRTGECRNVSTVQCTHRIRPVVSTQLLLNGSLAEEKIVIRSANLSNNAKTIIVQLNKSVKINCTRPNNNTRRSIHIGPGRAFYRTDIIRDIRQAHYNISKKD*NDTLKQIVIKLKEKFKNKTIVFTQSSGEDPEIVMHSFNCREEFFYCNTTQLFNST*NNST*NSTDN*NSTESNSTITLPCRIKQIINLWQEVRRAMYAPPIQRQIRCSSNITGLLLVRDGRSNNSSNDTETFRPRGRDMKDN*RSKLYKYKVVKIKPLRIAPTHAKRRVVQKEKRAIRLEAFFLRFLRAAGSTIGAASVTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTV*GIKQLQAKVLALERYLKDQQLLRI*SCSGKLICTTNVPWNISWSPRWNRSLDKI*TNMT*KQ*EKEIDNYTDIIYNLIEQSQNQQEQNEQDLLALDK*ASL*N*FDITQ*L*YIKIFIIIVRGLISLRIVFTILSIVNKVRQGYSPLSLQTLLPTQRGPDRPERTEERGRKKDRGTSTRLVHRFLALI*DDLRSLFLFSYHRLKDLLLIAARIVELLGRRK*EALKY**NLLQY*SQEIKNSAVSLLNTTAIAVAERTDKIIEVLQRGFRAILHIPTRIRQGLEKALL*,ATGAGAGTGACGAGGACCAAGAGGAATTATCCGCACTTGTGGAGATGAGGCATCTTGTTCCTTAAGATAGTAATGATATGTAGTGCCAACAACTTGTAGGTCACAGTCTATTATAAAGTACCTGTATAGAAAGAAGCAACTACCACTCTATTTTGTGCATCAGATGCTAAAGCATATGAGACAGAGAAGCATAATGTTTAGGCAACCCATGCCTGTGTACCCACAGACCCCAGCCCACAGGAAGTAGCATTAGAAAATGTGACAGAAACATTTAACATGTAGAAAAATGACATGGTAGAGCAGATGCATGAGGATATAATCAGTTTATAGGATCAAAGCCTAAAGCCATGTGTGAAACTAACCCCACTCTGTGTTACTTTAAATTGCACTGATAATTTAAATCTAACTTGCCCTAACAATAATACTTGTAGTAATAATACTAATTATAATATGAAAGAAAAAGGAGAAATAAAAAACTGCTCTTTCAATGTCACCACAGGAATAAGAGATAAGGTGACAAAAGAACATGCACTTTTCTATAAACTTAATGTAGTACCAATAGATGAAGATAGTAAAAATACTACGGGCAAATATAAGATGATAAATTGTAACACCTCAGTCATTACACAAGCCTGTCCAAAGGTATCCTTTAAGCCAATTCCCATACATTTTTGTGCCCCGGCTAGTTTTGCGATTCTAAAGTGTAAAGATAAGAAATTCAATAGAACAGGAGAATGTAGAAATGTCAGCACAGTACAATGTACACATAGAATTAGGCCAGTAGTATCAACTCAACTGCTGCTAAACGGCAGTCTAGCAGAAGAAAAGATAGTAATTAGATCTGCCAATCTCTCGAACAATGCTAAAACCATAATAGTACAGCTGAATAAATCTGTAAAAATTAATTGTACAAGACCCAACAATAATACAAGAAGAAGTATACACATAGGACCAGGGAGGGCATTTTATAGAACAGACATAATAAGAGATATAAGACAAGCGCATTATAACATTAGTAAGAAAGATTAGAATGACACTTTAAAACAGATAGTTATAAAATTAAAAGAAAAATTTAAGAATAAAACAATAGTCTTTACTCAATCCTCAGGAGAAGACCCAGAGATAGTGATGCATAGTTTTAATTGTAGAGAGGAATTTTTCTACTGTAATACAACACAGCTGTTTAATAGTACTTAGAATAATAGTACTTAGAATAGTACTGATAATTAGAATAGTACTGAATCAAATAGCACTATCACACTCCCATGCAGAATAAAACAAATTATAAACTTGTGGCAGGAAGTAAGAAGAGCAATGTATGCCCCTCCCATCCAAAGGCAAATTAGATGTTCATCAAATATTACAGGGCTGCTGCTAGTAAGAGATGGTAGGAGCAACAATAGTAGTAATGATACAGAGACCTTCAGGCCTAGAGGAAGAGATATGAAGGACAATTAGAGAAGTAAATTATATAAATATAAAGTAGTCAAAATTAAACCATTAAGAATAGCACCCACCCATGCAAAGAGAAGAGTGGTGCAAAAGGAAAAAAGAGCAATAAGACTTGAAGCTTTCTTCCTTAGGTTCTTAAGAGCAGCAGGAAGCACTATAGGCGCAGCGTCAGTGACGCTGACAGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAGCAGCAAAACAATTTGCTGAGAGCTATTGAGGCGCAACAGCATCTGTTGCAACTCACAGTCTAAGGCATCAAGCAGCTCCAGGCAAAAGTCCTGGCTTTAGAAAGATACCTAAAAGATCAACAGCTCCTAAGGATTTAAAGTTGCTCTGGAAAACTCATTTGCACCACTAATGTGCCCTGGAATATTAGTTGGAGCCCTAGATGGAATAGATCTCTAGATAAGATTTAGACTAACATGACCTAGAAGCAGTAAGAAAAAGAAATTGACAATTACACAGACATAATATATAACTTAATTGAACAATCACAGAACCAACAAGAACAGAATGAACAAGACTTATTGGCATTAGATAAGTAGGCAAGTTTGTAAAATTAGTTTGACATTACACAGTAGCTATAGTATATAAAAATATTCATAATAATAGTAAGAGGCTTGATAAGTTTAAGAATAGTTTTTACTATACTGTCTATAGTGAATAAAGTTAGGCAAGGATACTCACCATTGTCATTGCAGACCCTCCTCCCAACCCAGAGAGGACCCGACAGGCCCGAAAGAACAGAAGAAAGAGGTAGAAAGAAAGACAGAGGCACATCCACGAGATTAGTGCATAGATTCTTAGCACTCATCTAGGACGACCTGCGGAGCCTGTTCCTCTTCAGTTACCACCGCTTGAAAGACTTACTCTTAATTGCGGCGAGAATTGTAGAACTTCTAGGACGCAGAAAGTAAGAAGCACTGAAGTATTAGTAGAATCTCCTGCAGTATTAGAGTCAGGAAATAAAGAATAGTGCAGTTAGCTTGCTCAACACCACAGCAATAGCAGTAGCTGAGAGGACAGATAAAATTATAGAAGTATTACAAAGAGGCTTTAGAGCTATTCTCCACATACCTACACGAATAAGACAGGGCTTAGAAAAGGCTTTGCTATAA -MK115009.1,tat_exon2,7934,8027,8376,8469,forward,0.6866666666666661,RPSSQPREDPTGPKEQKKEVERKTEAHPRD,RPSSQPREDPTGPKEQKKEVERKTEAHPRD*,AGACCCTCCTCCCAACCCAGAGAGGACCCGACAGGCCCGAAAGAACAGAAGAAAGAGGTAGAAAGAAAGACAGAGGCACATCCACGAGATTAG -MK115009.1,rev_exon2,7935,8211,8377,8653,forward,1.3065934065934066,ILSTHLGRPAEPVPLQLPPLERLTLNCGENCRTSRTQKVRSTEVLVESPAVLESGNKE,DPPPNPERTRQARKNRRKR*KERQRHIHEISA*ILSTHLGRPAEPVPLQLPPLERLTLNCGENCRTSRTQKVRSTEVLVESPAVLESGNKE*,GACCCTCCTCCCAACCCAGAGAGGACCCGACAGGCCCGAAAGAACAGAAGAAAGAGGTAGAAAGAAAGACAGAGGCACATCCACGAGATTAGTGCATAGATTCTTAGCACTCATCTAGGACGACCTGCGGAGCCTGTTCCTCTTCAGTTACCACCGCTTGAAAGACTTACTCTTAATTGCGGCGAGAATTGTAGAACTTCTAGGACGCAGAAAGTAAGAAGCACTGAAGTATTAGTAGAATCTCCTGCAGTATTAGAGTCAGGAAATAAAGAATAG -MK115009.1,nef,8609,8996,8796,9417,forward,1.6390243902439028,MTYKRALDISHFLKEKGGLDGLIYSKRRQDILDLWLYNTQGYFPDWQNYTPGPGVRFPLCFR,MTYKRALDISHFLKEKGGLDGLIYSKRRQDILDLWLYNTQGYFPDWQNYTPGPGVRFPLCFR*CFKLVPVDPDKVEEASVRENNCLLSPENLHRMEDEHREVLQWRFDSRLAFHHIARELHPEYYKDC*,ATGACTTACAAGAGAGCTCTAGATATTAGCCACTTTTTAAAAGAAAAAGGGGGACTGGATGGGCTAATTTACTCCAAAAGAAGACAAGACATCCTTGATCTGTGGCTCTACAACACACAAGGCTACTTCCCTGACTGGCAGAACTACACACCAGGGCCAGGAGTCAGATTTCCACTGTGTTTTAGATAGTGCTTCAAGCTAGTACCAGTTGATCCAGATAAAGTAGAAGAGGCCAGTGTAAGAGAGAACAACTGCTTGTTAAGCCCCGAAAACCTGCATAGAATGGAGGACGAACACAGAGAAGTATTGCAGTGGAGGTTTGACAGCCGCCTAGCATTTCATCACATAGCCCGAGAGCTGCATCCGGAGTATTACAAGGACTGCTGA -MK115387.1,gag,292,1795,789,2292,forward,0.20799999999999996,MGARASVLSGGELDKWEKIRLRPGGKKRYKLKHIVWASRELERFAVNPGLLETTEGCKQILEQLQPSLPTGSEELRSLFNTVATLYCVHKRIEVQDTKEALEKIEEEQNKSKKKAQQAVADTGSTSQVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPVAPGQMREPRGSDIAGTTSTLQEQIAWMTSNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYKVLRAEQASQDVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSNIIMMQRGNFRNQRKTVKCFNCGKEGHIARNCRAPRKKGCWKCGREGHQMKDCTERQANFLGKIWPSSKGRPGNFLQSRPEPTAPPEESFRFGEETATPPQKQEPVDKEVYPLASLKSLFGNDPSSQ,MGARASVLSGGELDKWEKIRLRPGGKKRYKLKHIVWASRELERFAVNPGLLETTEGCKQILEQLQPSLPTGSEELRSLFNTVATLYCVHKRIEVQDTKEALEKIEEEQNKSKKKAQQAVADTGSTSQVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPVAPGQMREPRGSDIAGTTSTLQEQIAWMTSNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYKVLRAEQASQDVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSNIIMMQRGNFRNQRKTVKCFNCGKEGHIARNCRAPRKKGCWKCGREGHQMKDCTERQANFLGKIWPSSKGRPGNFLQSRPEPTAPPEESFRFGEETATPPQKQEPVDKEVYPLASLKSLFGNDPSSQ*,ATGGGTGCGAGAGCGTCTGTATTAAGCGGGGGAGAATTAGATAAATGGGAAAAAATTCGGTTAAGGCCAGGAGGAAAGAAAAGATATAAATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTTAACCCCGGCCTTTTAGAAACAACAGAGGGATGTAAACAAATACTGGAACAGCTGCAACCATCCCTTCCGACAGGATCAGAAGAACTTAGATCATTATTTAATACAGTAGCAACCCTCTATTGTGTGCATAAGAGAATAGAGGTACAAGACACCAAGGAAGCCTTAGAAAAGATAGAAGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAGGCAGTAGCTGACACAGGAAGTACCAGCCAGGTCAGCCAAAATTACCCGATAGTGCAGAACCTCCAGGGGCAAATGGTACATCAGGCCATATCGCCTAGAACTTTAAATGCATGGGTGAAAGTAGTAGAAGAGAAGGCCTTTAGCCCAGAGGTAATACCCATGTTTTCAGCATTATCGGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATCAATGAGGAGGCTGCAGAATGGGATAGAGTGCATCCAGTGCATGCAGGGCCTGTTGCACCAGGCCAAATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAAGAACAAATAGCATGGATGACAAGTAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCCTGGGATTAAATAAGATAGTAAGAATGTATAGCCCTACCAGCATTTTGGACATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAAAGTCCTAAGAGCCGAGCAAGCATCGCAGGATGTAAAAAATTGGATGACAGAAACCTTATTGGTCCAAAATGCAAACCCAGATTGTAAGACTATTTTAAAAGCATTGGGACCAGCAGCAACACTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGGGGACCCGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAACAAATTCAAATATCATAATGATGCAGAGAGGCAATTTTAGGAACCAAAGAAAGACTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAGGGAAGGACACCAAATGAAAGATTGTACTGAGAGACAGGCTAATTTTTTAGGGAAGATCTGGCCTTCCTCCAAGGGAAGGCCAGGGAACTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAGGAGAGCTTCAGGTTTGGGGAGGAGACAGCAACTCCTCCTCAGAAGCAGGAGCCGGTGGACAAGGAAGTGTATCCTTTAGCTTCCCTCAAATCACTCTTTGGCAACGACCCCTCGTCACAATAA -MK115387.1,pol,1587,4599,2084,5096,forward,0.13160518444665992,FFREDLAFLQGKARELSSEQTRANSPTRGELQVWGGDSNSSSEAGAGGQGSVSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVQLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSITVLDVGDAYFSIPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMIKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLKWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPDKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLKGAKALTEVIQLTEEAELELAENREILKEPVHGVYYDPSKDLIAELQKQGQGQWTYQIYQEPFKNLKTGKYARTRGTHTNDVKQLTEAVQKITTESIVIWGKTPRFKLPIQKETWDTWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTSRGRQKVVSLTDTTNQKTELQAICLALQDSGLEVNIVTDSQYALGIIQAQPDRSESEIVNQIIEQLIKKERVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEATHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKAIHTDNGTNFTSATVKAACWWAGIKQECGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDNRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED,FFREDLAFLQGKARELSSEQTRANSPTRGELQVWGGDSNSSSEAGAGGQGSVSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVQLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSITVLDVGDAYFSIPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMIKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLKWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPDKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLKGAKALTEVIQLTEEAELELAENREILKEPVHGVYYDPSKDLIAELQKQGQGQWTYQIYQEPFKNLKTGKYARTRGTHTNDVKQLTEAVQKITTESIVIWGKTPRFKLPIQKETWDTWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTSRGRQKVVSLTDTTNQKTELQAICLALQDSGLEVNIVTDSQYALGIIQAQPDRSESEIVNQIIEQLIKKERVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEATHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKAIHTDNGTNFTSATVKAACWWAGIKQECGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDNRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAGATCTGGCCTTCCTCCAAGGGAAGGCCAGGGAACTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAGGAGAGCTTCAGGTTTGGGGAGGAGACAGCAACTCCTCCTCAGAAGCAGGAGCCGGTGGACAAGGAAGTGTATCCTTTAGCTTCCCTCAAATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAGGAGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGACACAGTATTAGAAGAAATGAGTTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACCTATAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGCAGAAATTTGTTGACTCAGATTGGTTGTACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTACAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAAGAAGGGAAGATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGGGAACTTAATAAAAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACACCCCGCAGGGTTAAAAAAGAAGAAATCAATAACAGTACTGGATGTGGGTGATGCATATTTTTCAATTCCCTTAGATAAAGACTTCAGGAAGTATACTGCATTTACCATACCTAGTATAAATAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGATAAAAATCTTAGAGCCTTTTAGAAAGCAAAATCCAGACATAGTTATCTATCAATACATGGATGACTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAACTGAGACAACACTTGTTGAAGTGGGGATTGACCACACCAGATAAAAAACATCAGAAAGAACCCCCATTCCTGTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAGACAAAGATAGCTGGACTGTCAATGACATACAGAAGCTAGTGGGAAAATTGAATTGGGCAAGTCAGATTTATGCAGGGATTAAAGTGAGACAATTATGTAAACTCCTTAAGGGAGCCAAAGCGCTAACAGAAGTGATACAACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTCTAAAAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAGTTACAGAAGCAGGGGCAAGGCCAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAGTATGCAAGAACGAGGGGTACCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTGATATGGGGAAAGACCCCTAGATTTAAACTACCCATACAGAAAGAAACATGGGATACCTGGTGGACAGAATATTGGCAAGCCACCTGGATTCCCGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAATTAGAAAAAGAACCTATTGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAGCAGAGGAAGACAAAAGGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAACTGCAAGCAATTTGTCTAGCATTGCAGGATTCAGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCACTAGGAATAATTCAAGCACAACCAGATAGGAGTGAATCAGAGATAGTCAATCAAATAATAGAGCAGTTAATAAAAAAGGAAAGGGTCTACCTTGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTGCTGGAATCAGGAAAGTCCTATTTTTGGATGGAATAGATAAGGCCCAAGAGGAGCATGAGAAATATCACAATAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCCAGTTGTGATAAATGCCAGCTAAAGGGAGAAGCCACGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAATTAGATTGTACACATTTAGAAGGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAAGAAACAGCATACTTCCTCTTAAAATTAGCAGGAAGGTGGCCAGTGAAAGCAATACATACAGACAATGGAACCAATTTCACCAGTGCTACGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATGTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAAGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTCCAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACAGACCTACAAACTAAAGAATTACAGAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAACAGAGATCCACTTTGGAAAGGACCAGCAAAACTTCTTTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGACATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG -MK115387.1,vif,4543,5122,5040,5619,forward,0.3041666666666665,MENRWQVMIVWQVDRMRISTWKSLVKHHMYISKKAQGWFYRHHYENPHPRISSEVHIPLGDARLVITTYWGLHTGERDWHLGQGVSIECRERKYSTQVTPDLADQLIHLYYFDCFAESAIREAILGHRVSPRCEYQAGHNKVGSLQYLALTALVTPKKTKPPLPSVTKLTEDRWNKPQKTKGHRGSQTMNGH,MENRWQVMIVWQVDRMRISTWKSLVKHHMYISKKAQGWFYRHHYENPHPRISSEVHIPLGDARLVITTYWGLHTGERDWHLGQGVSIECRERKYSTQVTPDLADQLIHLYYFDCFAESAIREAILGHRVSPRCEYQAGHNKVGSLQYLALTALVTPKKTKPPLPSVTKLTEDRWNKPQKTKGHRGSQTMNGH*,ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGCACATGGAAAAGTTTAGTAAAACACCATATGTACATTTCAAAGAAAGCCCAGGGATGGTTTTATAGACATCACTATGAAAATCCTCATCCAAGAATAAGTTCAGAAGTACACATCCCGCTAGGGGATGCTAGATTGGTAATAACAACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCATTTGGGTCAAGGAGTCTCCATAGAATGCAGGGAAAGGAAATATAGCACACAAGTAACCCCTGACCTAGCAGACCAACTAATTCACCTGTATTATTTTGATTGTTTTGCAGAATCTGCTATAAGAGAGGCCATATTAGGACATAGAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGATCTCTACAGTACTTGGCACTAACAGCATTAGTAACACCAAAAAAGACAAAGCCACCTTTGCCTAGTGTGACAAAACTGACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCAAACAATGAATGGACACTAG -MK115387.1,vpr,5061,5355,5558,5850,forward,0.4038461538461544,MEQAPEDQGPQREPNNEWTLELLEELKREAVRHFPRTWLHGLGQHIYETYGDTWTGVEALIRILQQLLFIHFRIGCQHSRIGITRQRRARNGASRS,MEQAPEDQGPQREPNNEWTLELLEELKREAVRHFPRTWLHGLGQHIYETYGDTWTGVEALIRILQQLLFIHFRIGCQHSRIGITRQRRARNGASRS*I,ATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCAAACAATGAATGGACACTAGAGCTCTTAGAAGAGCTTAAGAGAGAAGCTGTTAGACATTTTCCTAGGACATGGCTTCATGGCTTGGGACAACATATCTATGAAACTTATGGGGATACTTGGACAGGAGTGGAAGCCTTAATAAGAATTCTGCAACAACTGCTGTTTATTCATTTCAGAATTGGGTGCCAACATAGCAGAATAGGCATCACTCGACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGATT -MK115387.1,tat_exon1,5332,5551,5830,6045,forward,0.41666666666666674,MEPVDPRLEPWKHPGSQPKTPCTKCYCKKCCFHCQVCFITKGLGISYGRKKRRQRRRPPQDSQTHQVPLPKQ,MEPVDPRLEPWKHPGSQPKTPCTKCYCKKCCFHCQVCFITKGLGISYGRKKRRQRRRPPQDSQTHQVPLPKQ*,ATGGAGCCAGTAGATCCTAGATTAGAGCCCTGGAAGCATCCAGGAAGTCAGCCTAAGACTCCTTGTACCAAATGCTATTGTAAAAAATGCTGCTTTCATTGCCAAGTTTGTTTCATAACAAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGACCTCCTCAAGACAGTCAGACTCATCAAGTACCTCTACCAAAGCAGTGA -MK115387.1,rev_exon1,5471,5552,5969,6045,forward,0.6346153846153846,MAGRSGDSDEDLLKTVRLIKYLYQSSE,MAGRSGDSDEDLLKTVRLIKYLYQSSE,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGACCTCCTCAAGACAGTCAGACTCATCAAGTACCTCTACCAAAGCAGTGAG -MK115387.1,vpu,5563,5809,6061,6310,forward,0.7682926829268295,MQSLYILTIVALVVAAILAIVVWAIVLIEYKKILKQRRIDRLIDRIIDRAEDSGNESEGDQEELSALVEMGHHAPWNVDDL,MQSLYILTIVALVVAAILAIVVWAIVLIEYKKILKQRRIDRLIDRIIDRAEDSGNESEGDQEELSALVEMGHHAPWNVDDL*,ATGCAATCCTTATATATATTAACAATAGTAGCATTAGTAGTAGCAGCAATATTAGCAATAGTTGTGTGGGCCATAGTACTCATAGAATATAAGAAAATATTAAAACAAAGGAGAATAGATAGGTTAATTGATAGAATAATAGATAGGGCAGAAGACAGTGGCAATGAGAGTGAAGGAGATCAAGAGGAGTTATCAGCACTTGTGGAGATGGGGCATCATGCTCCTTGGAATGTTGATGATCTATAG -MK115387.1,env,5726,8288,6224,8795,forward,0.6280373831775696,MRVKEIKRSYQHLWRWGIMLLGMLMIYSTADQWWVTVYYGVPVWREANTTLFCASDAKAYSTEAHNVWATHACVPTDPNPQEIVIGNVTEDFNMWKNNMVDQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDIRNSTVTSNTTTWGEMTNCTFNITTSIKDKMKKEAALFYKIDLVEIDEEKNNSSTRYRLINCNTSAITQACPKVSFEPIPIHFCAPAGFAILKCNNKKFSGKGPCTNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSDNITDNTKNIIVQLKEAIQIFCIRPNNNTRKSINIGPGRAFYTTGDIIGDIRQAHCNISGNWNNTLKQIATQLGKQLNQTQQIIFNSSAGGDPEIVTHSFNCGGEFFYCNSSSLFNSTWTKNGTGSWQSNDTQNGNITLQCRIKQIINLWQGVGKAMYAPPISGQINCTSNITGLVLTRDGGKVINETETFRPGGGNMKDNWRSELYKYKVVRIEPLGIAPTKAKRRVVQREKRAVGLGAMFLGFLGAAGSTMGAASIALTEQARRVLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQLLGLWGCSGKLICTTTVPWNRSWGGHNKNLDDIWGNMTWMEWEKEIDNYTSLIYTLITESHSQQEKNEQELLALDKWASLWNWFDISQWLWYIKIFIMIVGGLVGLRIVFAVLSIVNKVRQGYSPLSFQTLLPAPRGADRPEGIEEGGGERDKGRSGRLVNGFLALIWDDLRSLCLFSYHRLSDLLLIVIRIVELLGRRGWEALKYWWNLLQYWSQELKNSAVSLLNTTAIVVAEGTDRIIEILQRIGRAFLHIPRRIRQGLERALL,MRVKEIKRSYQHLWRWGIMLLGMLMIYSTADQWWVTVYYGVPVWREANTTLFCASDAKAYSTEAHNVWATHACVPTDPNPQEIVIGNVTEDFNMWKNNMVDQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDIRNSTVTSNTTTWGEMTNCTFNITTSIKDKMKKEAALFYKIDLVEIDEEKNNSSTRYRLINCNTSAITQACPKVSFEPIPIHFCAPAGFAILKCNNKKFSGKGPCTNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSDNITDNTKNIIVQLKEAIQIFCIRPNNNTRKSINIGPGRAFYTTGDIIGDIRQAHCNISGNWNNTLKQIATQLGKQLNQTQQIIFNSSAGGDPEIVTHSFNCGGEFFYCNSSSLFNSTWTKNGTGSWQSNDTQNGNITLQCRIKQIINLWQGVGKAMYAPPISGQINCTSNITGLVLTRDGGKVINETETFRPGGGNMKDNWRSELYKYKVVRIEPLGIAPTKAKRRVVQREKRAVGLGAMFLGFLGAAGSTMGAASIALTEQARRVLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQLLGLWGCSGKLICTTTVPWNRSWGGHNKNLDDIWGNMTWMEWEKEIDNYTSLIYTLITESHSQQEKNEQELLALDKWASLWNWFDISQWLWYIKIFIMIVGGLVGLRIVFAVLSIVNKVRQGYSPLSFQTLLPAPRGADRPEGIEEGGGERDKGRSGRLVNGFLALIWDDLRSLCLFSYHRLSDLLLIVIRIVELLGRRGWEALKYWWNLLQYWSQELKNSAVSLLNTTAIVVAEGTDRIIEILQRIGRAFLHIPRRIRQGLERALL*,ATGAGAGTGAAGGAGATCAAGAGGAGTTATCAGCACTTGTGGAGATGGGGCATCATGCTCCTTGGAATGTTGATGATCTATAGTACTGCAGACCAGTGGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAGAGAAGCAAACACCACTCTATTTTGTGCATCAGATGCTAAAGCATATAGTACAGAGGCACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAATAGTAATAGGAAATGTAACAGAAGATTTTAACATGTGGAAGAATAACATGGTAGATCAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGTCTAAAGCCATGTGTGAAACTAACCCCACTCTGTGTTACTTTAAATTGTACTGATATTAGGAATAGTACCGTTACTTCTAATACTACTACTTGGGGAGAAATGACAAACTGCACTTTCAATATCACCACAAGCATAAAGGATAAGATGAAAAAAGAAGCGGCACTTTTTTATAAAATTGATTTAGTAGAAATAGATGAAGAGAAAAATAACAGTAGTACCAGATATAGGTTGATAAATTGTAACACCTCAGCCATTACACAAGCCTGCCCAAAGGTATCCTTTGAGCCAATTCCCATACATTTTTGTGCCCCGGCTGGTTTTGCAATTCTAAAGTGTAATAATAAGAAGTTCAGTGGAAAGGGACCATGTACAAATGTCAGCACAGTGCAATGTACACATGGAATTAAGCCAGTAGTATCAACTCAACTGCTGTTAAATGGCAGTCTAGCAGAAGAAGAGGTAATGATTAGATCTGACAATATCACAGACAATACTAAAAACATAATAGTACAGTTGAAGGAAGCCATACAAATTTTCTGTATAAGACCCAACAACAATACAAGAAAAAGTATAAATATAGGACCAGGGAGAGCATTTTACACAACAGGAGATATAATAGGAGACATAAGGCAAGCACATTGTAACATTAGTGGAAATTGGAATAACACTTTAAAACAGATAGCTACACAATTAGGAAAACAACTGAATCAAACACAACAAATAATCTTTAATTCATCCGCAGGAGGGGACCCAGAGATTGTAACACACAGTTTTAATTGTGGAGGGGAATTCTTCTATTGTAATTCATCATCACTGTTTAATAGTACCTGGACTAAAAATGGTACTGGTAGTTGGCAGTCTAATGATACTCAGAATGGTAATATCACACTCCAATGCAGAATAAAACAAATTATAAACCTGTGGCAGGGAGTAGGAAAAGCAATGTATGCCCCTCCCATCAGTGGACAAATTAACTGTACATCAAATATTACAGGGCTGGTTTTAACAAGAGATGGGGGGAAGGTGATTAATGAAACTGAGACCTTTAGACCTGGAGGAGGAAATATGAAGGATAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAGAATTGAACCATTAGGAATAGCACCCACCAAGGCAAAAAGAAGAGTGGTGCAAAGAGAGAAAAGAGCAGTAGGACTGGGAGCTATGTTCCTTGGGTTCTTGGGAGCAGCCGGAAGCACTATGGGCGCAGCGTCAATAGCGCTGACGGAACAGGCCAGACGAGTATTGTCTGGTATAGTGCAACAGCAGAACAATTTGCTGAGGGCTATTGAGGCGCAACAGCATTTGTTGCAACTCACAGTCTGGGGCATTAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTACAGGATCAACAGCTCCTAGGACTTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTACTGTGCCTTGGAATCGTAGTTGGGGTGGGCATAACAAAAATCTAGATGACATTTGGGGTAACATGACCTGGATGGAGTGGGAAAAAGAAATTGACAATTACACAAGCTTAATATACACCTTAATTACAGAATCACATTCCCAACAAGAAAAGAATGAACAAGAATTATTGGCATTAGATAAATGGGCAAGTTTGTGGAATTGGTTTGACATATCACAATGGCTGTGGTATATAAAAATATTCATAATGATAGTAGGAGGCTTGGTAGGTTTAAGAATAGTTTTTGCTGTACTTTCTATAGTGAATAAAGTTAGGCAGGGATACTCACCATTATCATTTCAGACCCTCCTCCCAGCTCCGAGGGGAGCCGACAGGCCCGAAGGAATAGAAGAAGGAGGTGGAGAGAGAGACAAAGGCAGATCCGGTCGATTAGTGAACGGATTCTTAGCACTTATCTGGGACGATCTACGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGCGACTTACTCTTGATTGTGATCAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAATATTGGTGGAATCTCCTGCAGTACTGGAGTCAGGAACTAAAGAATAGTGCTGTCAGCTTGCTCAACACCACAGCTATAGTAGTAGCTGAAGGGACAGATAGGATAATAGAAATATTACAAAGAATTGGTAGAGCTTTTCTCCACATACCTAGGAGAATAAGACAGGGCTTAGAAAGGGCTTTGCTATAA -MK115387.1,tat_exon2,7869,7965,8376,8469,forward,0.6000000000000001,RPSSQLRGEPTGPKE,RPSSQLRGEPTGPKE*KKEVERETKADPVD**,AGACCCTCCTCCCAGCTCCGAGGGGAGCCGACAGGCCCGAAGGAATAGAAGAAGGAGGTGGAGAGAGAGACAAAGGCAGATCCGGTCGATTAGTGA -MK115387.1,rev_exon2,7870,8146,8377,8653,forward,0.29670329670329676,DPPPSSEGSRQARRNRRRRWRERQRQIRSISERILSTYLGRSTEPVPLQLPPLERLTLDCDQDCGTSGTQGVGSPQILVESPAVLESGTKE,DPPPSSEGSRQARRNRRRRWRERQRQIRSISERILSTYLGRSTEPVPLQLPPLERLTLDCDQDCGTSGTQGVGSPQILVESPAVLESGTKE*,GACCCTCCTCCCAGCTCCGAGGGGAGCCGACAGGCCCGAAGGAATAGAAGAAGGAGGTGGAGAGAGAGACAAAGGCAGATCCGGTCGATTAGTGAACGGATTCTTAGCACTTATCTGGGACGATCTACGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGCGACTTACTCTTGATTGTGATCAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAATATTGGTGGAATCTCCTGCAGTACTGGAGTCAGGAACTAAAGAATAG -MK115387.1,nef,8289,8940,8796,9417,forward,0.5162601626016183,MGGKWSKSSRVGWNAVRERMRRAQPTADRERAEPAADGVGAASRDLEKYGALTSRNTAATNADCAWLEAQEEEDEVGFPVRPQVPLRPMTYKAALDLSHFLKEKGGLEGLVYSQKRQDILDLWIYHTQGYFPDWQNYTPGPGIRYPLTFGWCFKLVPLEPDQVEEANEGENNSLLHPLSQHGMDDPEKEVLVWRFDSRLAFHHMAREKHPEFYKDC,MGGKWSKSSRVGWNAVRERMRRAQPTADRERAEPAADGVGAASRDLEKYGALTSRNTAATNADCAWLEAQEEEDEVGFPVRPQVPLRPMTYKAALDLSHFLKEKGGLEGLVYSQKRQDILDLWIYHTQGYFPDWQNYTPGPGIRYPLTFGWCFKLVPLEPDQVEEANEGENNSLLHPLSQHGMDDPEKEVLVWRFDSRLAFHHMAREKHPEFYKDC*,ATGGGTGGCAAGTGGTCAAAAAGTAGTAGGGTTGGATGGAATGCAGTGAGGGAAAGAATGAGACGAGCTCAGCCAACAGCAGATAGGGAACGAGCTGAGCCAGCAGCAGATGGGGTGGGAGCAGCATCTAGAGACCTGGAAAAATATGGAGCACTTACAAGTAGGAATACAGCAGCTACTAATGCTGATTGTGCCTGGCTAGAAGCACAAGAGGAGGAGGATGAGGTGGGTTTTCCAGTCAGACCTCAGGTACCTTTAAGACCCATGACTTATAAAGCAGCTCTAGATCTGAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAGTTTACTCCCAAAAAAGGCAAGATATCCTTGATCTGTGGATCTACCACACACAAGGCTATTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGATCAGATATCCCCTGACCTTTGGATGGTGCTTCAAGCTAGTACCACTTGAGCCAGATCAGGTAGAAGAGGCCAATGAAGGAGAGAACAACAGCCTGTTACACCCTCTGAGCCAGCATGGGATGGATGACCCGGAGAAAGAAGTGCTAGTGTGGAGGTTTGACAGCCGCCTCGCATTTCATCACATGGCCCGAGAGAAGCATCCGGAGTTCTACAAAGACTGCTGA -MK115491.1,gag,521,2027,789,2292,forward,0.2571999999999999,MGARASILSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWTTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSANVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE,MGARASILSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWTTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSANVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE*R*,ATGGGTGCGAGAGCGTCAATATTAAGCGGGGGAAAATTAGATGCATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATTTAGTATGGGCAAGCAGGGAGCTAGAACGATTTGCCGTTAACCCTGGCCTGTTAGAAACATCAGAGGGATGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATTTAATGCAGTAGCAGTCCTCTATTGTGTACATCAAAGGATACAGGTACAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGTAGCAGCAGCTGACACTGACACAGGAAACAGCAGCCAAAATTACCCCATAGTGCAGAACCTCCAGGGGCAAATGGTACATCAGCCCCTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAAAAGGCCTTCAGCCCAGAAGTCATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGACGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCTTGGGATTAAATAAAATAGTAAGGATGTATAGCCCTACCAGTATTCTGGATATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAGAACTTTAAGAGCTGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATTCGAATCCAGATTGTAAGACTATTTTAAAAGCATTAGGACCAGCAGCAACACTAGAGGAAATGATGACAGCATGTCAAGGAGTGGGGGGACCAGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAAATTCAGCTAATGTAATGATGCAGAGAGGCAATTTTAGAAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACATCAAATGAAAGACTGTACAGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAG -MK115491.1,pol,1813,4825,2084,5096,forward,0.14755732801595212,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSTGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSTGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAGGGGGGCAATTTAAAGAAGCTTTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACCCATAGAAATCTGTGGACACAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGCTTGGTTGTACCTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTCAATAAGAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAATTCCCTTAGATAAAGAATTCAGGAAGTATACTGCATTTACCATACCTAGTACAAATAATGAGACACCAGGGATTAGGTATGAGTACAATGTGCTGCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGCAAAATCCAGATATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAACTGAGACAACATCTGTTAAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAGTGGACAGTACAGCCTATAATACTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTACGCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAGGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTTTAAGAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGCAATGGACAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTACAAAAGATAGCCACAGAAAGCATAGTAATATGGGGAAAAACTCCTAAATTTAGACTACCTATACAAAAAGAAACATGGGAGACATGGTGGGCAGAGTACTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAATTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACTAAATTAGGCAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAGGTTATCTCCCTAACGGACACAACAAATCAAAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATCAGAAGTAAACATAGTAACAGACTCACAATATACATTAGGAATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAATCAGATAATAGAGCAGTTAATAAAAAAGGAAAAAGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGACAAACTAGTCAGTACTGGAGTCAGGAGAGTACTATTTCTAGATGGAATAGATAAGGCCCAAGAAGACCATGAGAAATATCACAGTAATTGGAGAGCAATGGCTGGTGATTTTAATATACCCCCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCAAAAAGGAGAGGCCATGCATGGACAAGTAGATTGTAGTCCAGGAATATGGCAACTAGATTGTACACATCTAGAAGGGAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTCTCCTGAAACTAGCAGGGAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTAATGTGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCCATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTATAGTGCAGGGGAAAGAATAGTAGATATAATAGCAACAGACCTACAAACTAAAGAATTACAGAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGGAGAAAAGCAAAAATCATTAGGGATTATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG -MK115491.1,vif,4769,5348,5040,5619,forward,0.35416666666666674,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH*,ATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATGTTTCAAAGAAAACTAAAGGATGGTTTTATAGACATCACTATGAAAGCACTCATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTGGTAGTAACAACATATTGGGGCCTGAATACAGGAGAAAGAGAATGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGAAAAAGGAAATATAGCACACAAGTTGACCCTAACCTAGCAGACCAACTAATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACATATAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGCTCTCTACAATACTTGGCACTAAAAGCATTAACAACACCAAAGAGAAGAAAGCCACCTTTACCTAGTGTTAGGAAACTGACAGAGGATAGATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAG -MK115491.1,vpr,5287,5581,5558,5850,forward,0.4038461538461544,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS*T,ATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAGAGCTTTTAGAGGAACTTAAGAATGAAGCGGTTAGACATTTTCCTAGGCCGTGGCTCCATGGCTTAGGACAACATATCTATGAAACTTATGGGGACACTTGGACAGGAGTGGAGGCCATAATAAGAACCCTGCAACAACTGCTGTTTATTCATTTCAGACTTGGGTGTCGACATAGCAGAATAGGCATTGTGCCACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACT -MK115491.1,tat_exon1,5558,5777,5830,6045,forward,0.29166666666666674,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ*,ATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCACCCAGGAAGTCAGCCTAAAACTCCTTGTACTAACTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAAAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGTAA -MK115491.1,rev_exon1,5697,5775,5969,6045,forward,0.5769230769230769,MAGRSGDSDEELLKAVRLIKILYQSS,MAGRSGDSDEELLKAVRLIKILYQSS,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGT -MK115491.1,vpu,5789,6035,6061,6310,forward,0.6865853658536587,MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAKDSGNESEGDQEELSALMEMGHHAPGDVDDL,MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAKDSGNESEGDQEELSALMEMGHHAPGDVDDL*,ATGCAACCTCTGCACATAGCAGCAATAGTAGGATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGACCATAGTGTTAATAGAATATAGGAAAATATTAAGACAAAAAAGGATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAAAAGACAGTGGCAATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAG -MK115491.1,env,5952,8493,6224,8795,forward,0.49135514018691584,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEAHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRNKMQKEYALFYKLDVVPIDNDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYENKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSETETFRPGGGDMKDNWRSELYKYKVEKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEAHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRNKMQKEYALFYKLDVVPIDNDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYENKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSETETFRPGGGDMKDNWRSELYKYKVEKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL*,ATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTGACAGTCTATTATGGGGTACCTGTATGGAAAGAAGCAAACACCACTCTATTTTGTGCATCGGATGCTAAAGCATATACCACAGAGGCACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGGATTGGAAAATGTGACAGAAAATTTTAACATGTGGAAAAATAACATGGTAGAACAGATGCATGAGGATGTAATCAATTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCACTAATCTGAATGTTACTAATACCAATAGCAGTAGTGAGGAGGGAAAGATGGCGGAAGAAATGAGAAACTGCTCTTTCAATATCACCACAAAAATAAGAAATAAGATGCAGAAGGAATATGCACTTTTTTATAAACTTGATGTAGTACCAATAGATAATGATAATACAAGTTATACATTGATAAATTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCTATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAGGATAAGAAGTTCAATGGATCAGGACCATGTAAAAATGTCAGCACAGTACAATGTACACATGGAATTAAGCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTTTAGCAGAAGAAGAGGTAGTAATTAGATCTGAAAATTTCACGAACAATGCTAAAACCATAATAGTACATCTGAAGGAACCTATACAAATTAATTGTACAAGACCCAACAACAATACAATGAAAAGTATCCCTCTAGGACCAGGAAGAGCATTCTATGCAACAGGAGCCATAATAGGAGATATAAGACAAGCACATTGTAACCTTAGTAGAAAAGCATGGAATAATACTTTAAAACAGGTAGTTGAAAAATTAAAAGAACAATATGAGAATAAAACAATAATCTTTAATCACTCCTCAGGAGGGGACCCAGAAATTATAATGCATACTTTTAATTGTGGAGGGGAATTTTTCTATTGTAATACAACACAGCTGTTTAATAGTACTTGGAATAGTACTTGGACTGGGAATGCTACCGAATTAGATGGAAACATCACACTCCCATGCAGAATAAAACAGATTATAAACAGGTGGCAAGAAGTAGGAAAAGCAATGTATGCCCCTCCCATTAGAGGAAAAATTAGATGTTCATCAAATATTACAGGGTTACTATTAGTAAGAGATGGTGGTAACACGAGCGAGACTGAGACCTTCAGACCTGGAGGAGGAGATATGAAGGACAATTGGAGGAGTGAATTATATAAATATAAAGTAGAAAAAATTGAGCCATTAGGAGTAGCACCCACCAGGGCAAAGAGAAGAGTGGTGCAAAGAGAAAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAAGCCAGGCTGTTATTGTCTGGTATAGTGCAACAGCAAAACAATTTGCTGAGAGCTATTGAGGCGCAACAACATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTACAGGATCAACAGCGCCTGGGAATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCCTGGAATGCTAGTTGGAGTAATAAATCTCTGAATCAGATTTGGGATAACATGACCTGGATGGAGTGGGAAAGAGAAATTAACAATTACACAGACACAATATACACCTTAATTGAAAAGGCGCAGAACCAGCAGGAAAAAAATGAACAAGAATTATTGGAATTGGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAAATGGCTGTGGTACATAAAATTATTCATAATGATAGTAGGAGGATTGATAGGTTTAAGAATAGTTTTTGCTGTACTTGCTATAGTAAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGCCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAGCTTATTCAATGTCACAGCCATCGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAAGAGCTTGTAGAGCTCTTCTCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCATTGTTATAA -MK115491.1,tat_exon2,8074,8170,8376,8469,forward,0.28666666666666596,RPTSQPRGDPTGPKESKKKVEKETETDQFD,RPTSQPRGDPTGPKESKKKVEKETETDQFD**,AGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGA -MK115491.1,rev_exon2,8075,8360,8377,8653,forward,0.39560439560439553,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVPLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVPLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE*CY*,GACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGCCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAG -MK115491.1,nef,8494,9115,8796,9417,forward,0.6162601626016186,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPMSLHGMEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPMSLHGMEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC*H*,ATGGGGGGCAAGTGGTCAAAAAGTAGTGGGGGTGGATGGCCTGCTGTAAGGGAAAGAATGAGACGAACTGAGCCAGCAGCAGAAGGGGTGGGAGCAGTATCTCGAGACCTGGAAAGACATGGAGCAGTCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGCGCCTGGCTGGAAGCACAAGAAGAGGACAGTGAAGTGGGTTTTCCAGTCAGACCTCAGGTGCCTTTAAGACCAATGACTTTCAAAGGAGCTCTCGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCCCAAAAAAGACAAGATATCCTTGACCTGTGGGTCTACAACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGACCAGATATCCACTGACCTTTGGGTGGTGTTTCAAGCTAGTACCAGTGGAGCCAGAAGAGGCCAATCAAGGAGAGAACAACTGCTTGTTACACCCTATGAGCCTGCATGGGATGGAGGACCCGGAAAAAGAAGTATTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCACATGGCCCGAGAGAAGCATCCGGAGTACTACAAAGACTGCTGACATTGA -MK116110.1,gag,0,1557,140,1643,forward,2.1186000000000007,MVFISCGVAPSANAENIGITSGLKAFSSTTFTHAFKVLGDMA,PESESRTREVLSTQDSAC*ALWPGPPTP*HAVIISSSVAAGPNAFKIVLQSGFAFWTNKVSVIQFFTSCEACSALRVL*NRST*SLKGSFGPCFMSKMLTGLYILTILFNPRITHLL*ISPTGIGGLFVIHPICS*RVLVVPAISLPLGSLIWPGATGPACTGCNLSHSAASSLMVSFNICIAA*CPPTVFSMVFISCGVAPSANAENIGITSGLKAFSSTTFTHAFKVLGDMA*CTICPWRFCTIG*FWLTWLLFPAPAAACCAFILLLFCSSSILSSAPLVSCISIL*CIQ*RTATVLYNDLSSSDPVWRDGCSCPSICLQPSDVSNRPGLTANRSSSLLAHTRCFNLYFFFPPGLNRIFSHWSNFPPLNTDALAPISLLLASAR*KLFWRTHQSPKQ*AK*IQLP**CRKAILGTKRRLLSVSTVVK*GI*QKIAGPPGERAVGNVDRKDTR*KIVVRDRLIF*GNSGLPTRGGQGISFRADQSQQPHQRRASGLGKRQQLPLRSRSR*TGNYIP*,CCTGAAAGCGAAAGTAGAACCAGAGAAGTTCTCTCGACGCAGGACTCGGCTTGCTGAGCTTTATGGCCGGGTCCCCCCACTCCCTGACATGCTGTCATCATTTCTTCTAGTGTAGCTGCTGGTCCCAATGCTTTTAAAATAGTCTTACAATCTGGGTTTGCATTTTGGACCAACAAGGTTTCTGTCATCCAATTTTTTACATCCTGTGAAGCTTGCTCGGCTCTTAGGGTTTTATAGAACCGGTCTACATAGTCTCTAAAGGGTTCCTTTGGTCCTTGTTTTATGTCCAAAATGCTGACAGGACTATACATTCTTACTATTTTATTTAATCCCAGGATTACCCATCTTTTATAGATATCTCCTACTGGGATAGGTGGATTATTTGTCATCCATCCTATTTGTTCCTGAAGGGTACTAGTAGTTCCTGCTATATCACTTCCCCTTGGTTCTCTCATTTGGCCTGGTGCAACAGGCCCTGCATGCACTGGATGCAATCTATCCCATTCTGCAGCTTCCTCATTGATGGTCTCTTTTAATATTTGCATTGCTGCTTGATGTCCCCCCACTGTATTTAGCATGGTGTTTATATCTTGTGGGGTGGCTCCTTCTGCTAATGCTGAAAACATAGGTATTACTTCTGGGCTAAAAGCCTTTTCTTCTACTACTTTTACCCATGCATTTAAAGTTCTAGGTGACATGGCCTGATGTACCATTTGCCCCTGGAGGTTTTGCACTATAGGGTAGTTTTGGCTGACCTGGCTGTTATTTCCTGCGCCAGCTGCTGCTTGCTGTGCTTTCATCTTGCTTTTGTTTTGCTCTTCCTCTATCTTATCTAGCGCTCCCTTGGTGTCTTGTATCTCTATCCTTTGATGTATACAATAGAGGACCGCTACTGTATTATATAATGATTTAAGCTCTTCTGACCCTGTTTGGAGGGATGGCTGTAGCTGTCCCAGTATTTGTCTACAGCCTTCTGATGTTTCTAACAGGCCAGGATTAACTGCGAATCGTTCTAGCTCCCTGCTTGCCCATACTAGATGTTTTAACCTATATTTTTTCTTTCCTCCTGGCCTTAACCGAATTTTTTCCCATTGGTCTAATTTTCCCCCGCTTAATACTGACGCTCTCGCACCCATCTCTCTCCTTCTAGCCTCCGCTAGGTAAAAACTTTTTTGGCGTACTCACCAGTCGCCGAAGCAATGAGCCAAGTAAATTCAACTACCGTAATGATGCAGAAAGGCAATTTTAGGAACCAAAAGAAGACTGTTAAGTGTTTCAACTGTGGTAAAATAGGGCATATAGCAAAAAATTGCAGGGCCCCCAGGAGAAAGGGCTGTTGGAAATGTGGACAGGAAGGACACCAGATGAAAGATTGTAGTGAGAGACAGGCTAATTTTTTAGGGAAACTCTGGCCTTCCCACAAGGGGAGGCCAGGGAATTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAGGAGAGCTTCAGGTTTGGGGAAGAGACAGCAACTCCCCCTCAGAAGCAGGAGCCGATAGACAGGGAACTATATTCCTTAG -MK116110.1,pol,1393,4405,1435,4447,forward,0.19680957128614174,FFRETLAFPQGEAREFPSEQTRANSPTRGELQVWGRDSNSPSEAGADRQGTIFLSFPQITLWQRPLVSIKVGGQLKEALLDTGADDTVLEEMCLPGKWKPKMIGGIGGFIKVRQYDQIPIEIYGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVRLKPGMDGPKIKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPIFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRKQNPDMVIYQYMDDLYIGSDLELGQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPITLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKSLTEVVPLTREAELELAENREILKEPVHGVYYDPSKDLIAELQKQGQGQWTYQIYQEPFKNLKTGKYARIKGTHTNDVKQLTQAVQKIATESIVIWGKTPKFRLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKDPIVGAETFYVDGAANRDTKLGKAGYVTDRGRQKIVPLTDTTNQKTELQAIYLALQDSGSEVNIVSDSQYAIGILQAQPDKSESELVNQIIEQLIKKEKVYLTWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVNTIHTDNGSNFTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGRYSAGERIVDMIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSEIKVVPRRKAKIIRDYGKQMAGDDCVAGRQDED,FFRETLAFPQGEAREFPSEQTRANSPTRGELQVWGRDSNSPSEAGADRQGTIFLSFPQITLWQRPLVSIKVGGQLKEALLDTGADDTVLEEMCLPGKWKPKMIGGIGGFIKVRQYDQIPIEIYGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVRLKPGMDGPKIKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPIFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRKQNPDMVIYQYMDDLYIGSDLELGQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPITLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKSLTEVVPLTREAELELAENREILKEPVHGVYYDPSKDLIAELQKQGQGQWTYQIYQEPFKNLKTGKYARIKGTHTNDVKQLTQAVQKIATESIVIWGKTPKFRLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKDPIVGAETFYVDGAANRDTKLGKAGYVTDRGRQKIVPLTDTTNQKTELQAIYLALQDSGSEVNIVSDSQYAIGILQAQPDKSESELVNQIIEQLIKKEKVYLTWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVNTIHTDNGSNFTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGRYSAGERIVDMIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSEIKVVPRRKAKIIRDYGKQMAGDDCVAGRQDED*,TTTTTTAGGGAAACTCTGGCCTTCCCACAAGGGGAGGCCAGGGAATTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAGGAGAGCTTCAGGTTTGGGGAAGAGACAGCAACTCCCCCTCAGAAGCAGGAGCCGATAGACAGGGAACTATATTCCTTAGCTTCCCTCAAATCACTCTTTGGCAACGACCCCTCGTCTCAATAAAAGTAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGTGTTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAATATGATCAGATACCCATAGAAATCTATGGACATAAAGCTATAGGTACAGTGTTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATTTGTTGACTCAGATTGGGTGCACTTTAAATTTTCCCATTAGTCCTATCGAAACTGTACCAGTAAGATTAAAGCCAGGAATGGATGGCCCAAAAATTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAGATTTCAAAGATTGGGCCTGAAAATCCATACAATACTCCAATATTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGGGAACTTAATAAGAGAACTCAAGATTTCTGGGAAGTTCAATTGGGAATACCGCATCCCGCAGGATTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCATTAGATAAAGACTTTAGGAAGTATACTGCATTTACCATACCCAGTGTAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAGCTAGCATGACAAAAATTTTAGAGCCTTTTAGGAAGCAAAATCCAGACATGGTTATTTATCAATACATGGATGATCTATATATAGGATCTGACTTGGAATTAGGACAGCATAGGACAAAAATAGAGGAACTGAGACAACATCTATTGAGGTGGGGGTTTACCACACCAGACAAGAAGCATCAGAAAGAACCTCCATTCCTCTGGATGGGGTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAACACTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTAGGAAAATTAAATTGGGCAAGTCAGATTTATGCAGGGATTAAAGTAAGGCAGTTATGTAAACTCCTTAGAGGAACCAAATCACTAACAGAAGTAGTACCACTAACAAGAGAGGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTCTAAAAGAACCGGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAATTACAAAAGCAGGGACAAGGCCAGTGGACTTATCAGATTTATCAAGAACCATTTAAAAATCTGAAAACAGGAAAGTATGCAAGAATAAAGGGTACCCACACTAATGATGTAAAACAATTAACACAGGCTGTGCAAAAAATAGCCACAGAAAGCATAGTAATATGGGGAAAAACTCCTAAATTTAGACTACCCATACAAAAAGAAACATGGGAAACATGGTGGACAGAGTATTGGCAAGCCACCTGGATCCCTGAGTGGGAGTTTGTTAATACCCCTCCCTTAGTAAAATTATGGTACCAGTTAGAGAAAGACCCCATAGTAGGAGCAGAAACATTCTATGTCGATGGGGCAGCCAATAGGGATACTAAATTAGGAAAAGCAGGATATGTTACTGACAGGGGAAGACAAAAAATTGTCCCCCTAACTGACACAACAAATCAGAAGACTGAGTTACAAGCAATTTACCTAGCTCTGCAGGATTCAGGATCAGAAGTAAACATAGTATCAGACTCACAGTATGCAATAGGAATTCTTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAATCAAATAATAGAGCAGTTAATAAAAAAGGAAAAAGTCTACCTGACATGGGTGCCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTGCTGGAATCAGGAAAGTATTATTCTTAGATGGAATAGATAAGGCCCAAGAAGAACATGAGAAATATCACAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCCATAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGTTAAAAGGAGAAGCCATACATGGACAAGTAGACTGTAGTCCAGGAATATGGCAACTAGATTGTACACATTTGGAAGGAAAAGTTATCCTGGTAGCAGTTCATGTGGCCAGTGGATATATTGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATATTTTATCTTAAAATTAGCAGGAAGATGGCCAGTAAACACAATACATACAGACAATGGCAGCAACTTCACTAGCACTGCGGTTAAAGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGGGATCAAGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGAGGTACAGTGCAGGGGAAAGAATAGTAGACATGATAGCATCAGACATACAAACTAAAGAATTACAAAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTCCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAACAGTGAAATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATCATTAGGGACTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAGGTAGACAGGATGAGGATTAA -MK116110.1,vif,4349,4928,4391,4970,forward,0.546875,MENRWQVMIVWQVDRMRINAWKSLVKHHMHVSRKVERWVYKHHYESTNPRISSEVHIPLGDARLKITTYWGLHTGERDWHLGQGVSIEWRKKSYNTQVDPEVADQLIHLYYFDCFSESAIRKAIVGHRVSPSCEYQAGHNKVGSLQYLALAALVKSKKTKPPLPSVTKLTEDRWNKPQRTKGRRGNHIMNGH,MENRWQVMIVWQVDRMRINAWKSLVKHHMHVSRKVERWVYKHHYESTNPRISSEVHIPLGDARLKITTYWGLHTGERDWHLGQGVSIEWRKKSYNTQVDPEVADQLIHLYYFDCFSESAIRKAIVGHRVSPSCEYQAGHNKVGSLQYLALAALVKSKKTKPPLPSVTKLTEDRWNKPQRTKGRRGNHIMNGH*,ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAGGTAGACAGGATGAGGATTAATGCATGGAAAAGCTTAGTAAAGCACCATATGCATGTTTCAAGGAAAGTTGAGAGATGGGTTTATAAACATCACTATGAAAGTACTAATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTAAAAATAACAACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCATTTGGGCCAGGGAGTCTCCATAGAATGGAGAAAAAAGAGCTATAATACACAAGTAGACCCTGAAGTAGCAGACCAACTAATCCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAAAGCCATAGTAGGACATAGAGTTAGTCCTAGTTGTGAATATCAAGCAGGACATAACAAGGTAGGATCCCTACAGTACTTGGCATTAGCAGCATTAGTAAAATCAAAAAAGACAAAGCCACCTTTGCCTAGCGTTACGAAGCTGACGGAGGATAGATGGAACAAGCCCCAGAGGACCAAGGGCCGCAGAGGGAACCATATAATGAATGGGCACTAG -MK116110.1,vpr,4867,5158,4909,5200,forward,0.48333333333333317,MEQAPEDQGPQREPYNEWALELLEELKREAVRHFPRIWLQSLGQYVYETYGDTWTGVEAIIRILQQMLFIHFRIGCQHSRIGIIRRGRTRNGASRP,MEQAPEDQGPQREPYNEWALELLEELKREAVRHFPRIWLQSLGQYVYETYGDTWTGVEAIIRILQQMLFIHFRIGCQHSRIGIIRRGRTRNGASRP*,ATGGAACAAGCCCCAGAGGACCAAGGGCCGCAGAGGGAACCATATAATGAATGGGCACTAGAGCTTTTAGAGGAGCTTAAGAGAGAAGCTGTTAGACATTTCCCTAGGATATGGCTTCAGAGCTTAGGACAATACGTCTATGAAACTTATGGGGATACTTGGACAGGAGTGGAAGCCATAATAAGAATTTTGCAACAAATGCTGTTCATTCATTTCAGAATTGGGTGTCAACATAGCAGAATAGGCATTATTCGACGAGGGAGAACAAGAAATGGAGCCAGTAGACCCTAG -MK116110.1,tat_exon1,5138,5357,5180,5395,forward,0.6111111111111112,MEPVDPSLAPWKHPGSQPKTACTNCYCKKCCLHCQVCFTKKGLGISYGRKKRRQRRRPPQSSKAHQNPLPKQ,MEPVDPSLAPWKHPGSQPKTACTNCYCKKCCLHCQVCFTKKGLGISYGRKKRRQRRRPPQSSKAHQNPLPKQ*,ATGGAGCCAGTAGACCCTAGCCTAGCGCCCTGGAAGCACCCAGGAAGTCAGCCTAAGACTGCTTGTACCAATTGCTATTGTAAAAAGTGCTGCTTACATTGCCAAGTTTGTTTCACAAAAAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGACCTCCTCAAAGCAGTAAGGCTCATCAAAATCCTCTACCAAAGCAGTAA -MK116110.1,rev_exon1,5277,5355,5319,5395,forward,0.5769230769230769,MAGRSGDSDEDLLKAVRLIKILYQSS,MAGRSGDSDEDLLKAVRLIKILYQSS,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGACCTCCTCAAAGCAGTAAGGCTCATCAAAATCCTCTACCAAAGCAGT -MK116110.1,vpu,5369,5615,5411,5657,forward,0.48124999999999996,MQSLQIGAIVALVVGTIIAIVVWSIVLIEYRKILRQKKIDRIIDRIVERAEDSGNESEGDQEELSALVERGHDAPWNVNDL,MQSLQIGAIVALVVGTIIAIVVWSIVLIEYRKILRQKKIDRIIDRIVERAEDSGNESEGDQEELSALVERGHDAPWNVNDL*,ATGCAATCTTTGCAAATAGGAGCAATAGTAGCATTAGTAGTAGGAACAATAATAGCAATAGTTGTGTGGTCTATAGTACTCATAGAATATAGGAAAATATTAAGACAAAAGAAAATAGATAGAATAATAGATAGAATAGTAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGAGACCAGGAAGAGTTATCAGCACTGGTGGAAAGGGGGCATGATGCTCCTTGGAATGTTAATGATCTGTAG -MK116110.1,env,5532,8073,5574,8124,forward,0.5259128386336873,MRVKETRKSYQHWWKGGMMLLGMLMICSAATNLWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVLLGNVTEDFNAWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVILHCTDVNNTRNGMTGELKNCSFNITTKITNKVQKEYALFYKLDVVPINNKDNDTSFNNNSYRLISCNTSVITQACPKVSFEPIPIHYCTPAGYAILRCNNETFSGKGPCTNVSSIQCTHGIRPVVSTQLLLNGSLAKQEVVIRSQNFSDNVKTIIVQLKTPVKINCTRPNNNTRKSIHAGPGKVIYATGEIIGDIRQAHCNISAAEWNDTLGQIVTKLQEQFGNKTIVFNQSSGGDPEIVTHSFNCGGEFFYCNSTQLFNSTWNNNGTNTWNSTGNITLPCKIRQIVNMWQKVGKAMYAPPIRGQIKCSSNITGLLLTRDGGNESESETFRPGGGDMRDNWRSELYKYKVVRIEPLGLAPTKAKRRVVQREKRAIGTLGAVFLGFLGTAGSTMGAASMTLTVQARQLLSGIVQQQNNLLKAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQLLGIWGCSGKLICTTAVPWNASWSNKSLNEIWDNMTWMEWEKEISNYTQLIYTLIEESQSQQEKNEQELLALDKWDSLWSWFSITKWLWYIKIFIMIVGGLIGLRIVFTVLSIVNRVRQGYSPLSFQTRFPAPRGPDRPEGIEEDGGERDRDRSTRLVTGFLPLFWDDLRSLCLFSYHRLRDLLLIAARIVELLGHRGWEILKHWWSLLQYWSQELKKSAVSLLNATAIAVAEGTDRIIEVVQRACRAILHIPVRLRQGLERALL,MRVKETRKSYQHWWKGGMMLLGMLMICSAATNLWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVLLGNVTEDFNAWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVILHCTDVNNTRNGMTGELKNCSFNITTKITNKVQKEYALFYKLDVVPINNKDNDTSFNNNSYRLISCNTSVITQACPKVSFEPIPIHYCTPAGYAILRCNNETFSGKGPCTNVSSIQCTHGIRPVVSTQLLLNGSLAKQEVVIRSQNFSDNVKTIIVQLKTPVKINCTRPNNNTRKSIHAGPGKVIYATGEIIGDIRQAHCNISAAEWNDTLGQIVTKLQEQFGNKTIVFNQSSGGDPEIVTHSFNCGGEFFYCNSTQLFNSTWNNNGTNTWNSTGNITLPCKIRQIVNMWQKVGKAMYAPPIRGQIKCSSNITGLLLTRDGGNESESETFRPGGGDMRDNWRSELYKYKVVRIEPLGLAPTKAKRRVVQREKRAIGTLGAVFLGFLGTAGSTMGAASMTLTVQARQLLSGIVQQQNNLLKAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQLLGIWGCSGKLICTTAVPWNASWSNKSLNEIWDNMTWMEWEKEISNYTQLIYTLIEESQSQQEKNEQELLALDKWDSLWSWFSITKWLWYIKIFIMIVGGLIGLRIVFTVLSIVNRVRQGYSPLSFQTRFPAPRGPDRPEGIEEDGGERDRDRSTRLVTGFLPLFWDDLRSLCLFSYHRLRDLLLIAARIVELLGHRGWEILKHWWSLLQYWSQELKKSAVSLLNATAIAVAEGTDRIIEVVQRACRAILHIPVRLRQGLERALL*,ATGAGAGTGAAGGAGACCAGGAAGAGTTATCAGCACTGGTGGAAAGGGGGCATGATGCTCCTTGGAATGTTAATGATCTGTAGTGCTGCAACAAATTTGTGGGTCACAGTCTATTATGGGGTACCTGTATGGAAGGAAGCAACCACCACTCTATTTTGTGCATCAGATGCTAAAGCATATGATACAGAGGTACATAATGTTTGGGCCACGCATGCCTGTGTACCCACGGACCCCAACCCACAAGAAGTATTATTGGGAAATGTGACAGAAGATTTTAATGCATGGAAAAATAACATGGTAGAGCAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGCTTAAAGCCATGTGTAAAATTAACCCCACTTTGTGTTATTTTGCATTGCACTGATGTCAACAATACTAGAAATGGGATGACAGGAGAACTAAAAAACTGCTCTTTCAATATCACCACAAAAATAACAAATAAGGTACAGAAAGAATATGCACTCTTTTATAAACTTGATGTAGTACCAATAAATAATAAGGATAATGATACTAGCTTTAATAATAATAGCTATAGGTTGATAAGTTGTAACACCTCAGTTATTACACAGGCTTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTACTGTACCCCGGCTGGTTATGCAATTCTAAGGTGTAACAATGAGACATTCAGTGGAAAAGGGCCATGTACAAATGTCAGCTCAATACAATGTACACATGGAATTAGGCCAGTAGTGTCAACTCAACTGCTGTTAAATGGCAGTCTAGCAAAACAGGAGGTAGTAATTAGATCTCAAAATTTCTCGGACAATGTTAAAACCATAATAGTACAGCTGAAGACCCCTGTAAAAATTAACTGTACAAGGCCCAATAACAATACAAGAAAAAGTATACATGCAGGACCAGGGAAAGTAATTTATGCAACAGGAGAAATAATAGGAGATATAAGACAAGCACATTGCAACATTAGTGCAGCAGAGTGGAATGATACTTTAGGACAGATAGTTACAAAATTACAAGAACAATTTGGGAATAAAACAATAGTCTTCAATCAATCGTCAGGAGGGGACCCAGAAATTGTAACACACAGTTTTAATTGTGGAGGGGAATTTTTTTACTGTAATTCAACACAACTGTTTAATAGTACTTGGAATAATAATGGTACTAATACTTGGAATAGTACAGGTAATATCACACTCCCATGTAAAATAAGGCAAATTGTAAACATGTGGCAGAAAGTAGGAAAAGCAATGTATGCTCCTCCCATCCGTGGACAAATTAAATGTTCATCAAATATTACAGGGCTGCTATTAACAAGAGATGGTGGTAACGAGAGTGAGAGCGAAACCTTCAGACCTGGCGGAGGAGATATGAGGGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAGAATTGAACCATTAGGACTAGCACCCACTAAGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAATAGGAACACTGGGAGCTGTGTTCCTTGGGTTCTTGGGAACAGCAGGAAGCACTATGGGCGCAGCGTCAATGACGCTGACGGTACAGGCCAGGCAATTATTGTCTGGTATAGTGCAGCAGCAGAACAATCTGCTGAAGGCTATTGAGGCGCAACAGCATCTGTTGCAACTCACAGTCTGGGGCATTAAACAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTACAGGATCAACAGCTCCTGGGGATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCTTGGAATGCTAGTTGGAGCAATAAATCTCTGAATGAAATTTGGGATAACATGACCTGGATGGAGTGGGAAAAAGAAATTAGTAATTACACACAATTAATATACACTTTAATTGAAGAATCGCAGAGCCAGCAAGAAAAGAATGAACAAGAATTATTGGCACTAGATAAGTGGGACAGCTTGTGGAGTTGGTTTAGTATAACAAAATGGCTGTGGTATATAAAAATATTCATAATGATAGTAGGAGGCTTAATAGGGTTAAGAATAGTTTTTACTGTACTTTCTATAGTAAATAGAGTTAGGCAGGGATATTCACCATTGTCATTTCAGACCCGCTTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGACGGTGGAGAGAGAGACAGAGACAGATCCACACGCTTAGTAACCGGATTCTTACCACTTTTCTGGGACGACCTGAGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGCAGCGAGGATTGTGGAACTTCTGGGACACAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTACAATATTGGAGTCAGGAACTAAAAAAAAGTGCTGTTAGCTTGCTCAATGCCACAGCTATAGCAGTAGCTGAGGGGACAGATAGGATTATAGAAGTAGTACAAAGAGCTTGTAGAGCTATTCTCCACATACCTGTAAGACTAAGACAAGGCTTAGAAAGAGCTTTGCTATAA -MK116110.1,tat_exon2,7654,7750,7705,7798,forward,0.5,RPASQPRGDPTGPKESKKTVERETETDPHA,RPASQPRGDPTGPKESKKTVERETETDPHA**,AGACCCGCTTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGACGGTGGAGAGAGAGACAGAGACAGATCCACACGCTTAGTAA -MK116110.1,rev_exon2,7655,7940,7706,7982,forward,0.48241758241758226,DPLPSPEGTRQARRNRRRRWRERQRQIHTLSNRILTTFLGRPEEPVPLQLPPLERLTLDCSEDCGTSGTQGVGNPQTLVESPTILESGTKKKCC,DPLPSPEGTRQARRNRRRRWRERQRQIHTLSNRILTTFLGRPEEPVPLQLPPLERLTLDCSEDCGTSGTQGVGNPQTLVESPTILESGTKKKCC*,GACCCGCTTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGACGGTGGAGAGAGAGACAGAGACAGATCCACACGCTTAGTAACCGGATTCTTACCACTTTTCTGGGACGACCTGAGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGCAGCGAGGATTGTGGAACTTCTGGGACACAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTACAATATTGGAGTCAGGAACTAAAAAAAAGTGCTGTTAG -MK116110.1,nef,8074,8695,8125,8752,forward,0.4668269230769231,MGGKWSKSSVVGWPAVRERIRRAGPAAEGVGAVSRDLDKHGAITSNNTPATNAACAWLEAQEEEEVGFPVRPQVPLRPMTYKGALDLSHFLKEKGGLEGMIYSQQRQDILDLWVYHTQGYFPDWQNYTPGPGVRFPLTFGWCFKLVPLETEQVEAATGGENNCLLHPLNQHGMDDPEREVLMWKFDSSLAFHHRAKELHPEYYKDC,MGGKWSKSSVVGWPAVRERIRRAGPAAEGVGAVSRDLDKHGAITSNNTPATNAACAWLEAQEEEEVGFPVRPQVPLRPMTYKGALDLSHFLKEKGGLEGMIYSQQRQDILDLWVYHTQGYFPDWQNYTPGPGVRFPLTFGWCFKLVPLETEQVEAATGGENNCLLHPLNQHGMDDPEREVLMWKFDSSLAFHHRAKELHPEYYKDC*,ATGGGTGGCAAGTGGTCAAAAAGTAGTGTGGTTGGATGGCCTGCTGTAAGGGAAAGAATAAGAAGAGCTGGGCCAGCAGCAGAAGGGGTGGGAGCAGTATCTCGAGACCTGGACAAACATGGAGCAATCACAAGTAACAATACACCAGCTACTAATGCTGCTTGTGCCTGGCTAGAAGCACAAGAGGAGGAGGAGGTGGGTTTTCCAGTTAGGCCTCAAGTACCTTTAAGACCAATGACTTACAAGGGAGCTTTGGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGATGATATACTCCCAGCAAAGACAAGATATCCTTGATCTGTGGGTCTACCACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGACCAGGGGTCAGGTTTCCACTGACCTTTGGATGGTGCTTCAAACTAGTACCACTTGAGACAGAGCAGGTAGAAGCGGCCACTGGAGGAGAGAACAACTGCTTGTTACACCCTTTGAACCAGCATGGGATGGATGACCCGGAGAGAGAAGTACTAATGTGGAAGTTTGACAGCAGCCTAGCATTTCATCACAGAGCCAAAGAGCTGCATCCGGAGTACTACAAAGACTGCTGA -MK115527.1,gag,683,2189,789,2292,forward,0.2571999999999999,MGARASILSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWTTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSANVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE,MGARASILSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWTTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSANVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE*R*,ATGGGTGCGAGAGCGTCAATATTAAGCGGGGGAAAATTAGATGCATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATTTAGTATGGGCAAGCAGGGAGCTAGAACGATTTGCCGTTAACCCTGGCCTGTTAGAAACATCAGAGGGATGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATTTAATGCAGTAGCAGTCCTCTATTGTGTACATCAAAGGATACAGGTACAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGTAGCAGCAGCTGACACTGACACAGGAAACAGCAGCCAAAATTACCCCATAGTGCAGAACCTCCAGGGGCAAATGGTACATCAGCCCCTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAAAAGGCCTTCAGCCCAGAAGTCATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGACGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCTTGGGATTAAATAAAATAGTAAGGATGTATAGCCCTACCAGTATTCTGGATATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAGAACTTTAAGAGCTGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATTCGAATCCAGATTGTAAGACTATTTTAAAAGCATTAGGACCAGCAGCAACACTAGAGGAAATGATGACAGCATGTCAAGGAGTGGGGGGACCAGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAAATTCAGCTAATGTAATGATGCAGAGAGGCAATTTTAGAAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACATCAAATGAAAGACTGTACAGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAG -MK115527.1,pol,1975,4987,2084,5096,forward,0.14755732801595212,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSTGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSTGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAGGGGGGCAATTTAAAGAAGCTTTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACCCATAGAAATCTGTGGACACAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGCTTGGTTGTACCTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTCAATAAGAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAATTCCCTTAGATAAAGAATTCAGGAAGTATACTGCATTTACCATACCTAGTACAAATAATGAGACACCAGGGATTAGGTATGAGTACAATGTGCTGCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGCAAAATCCAGATATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAACTGAGACAACATCTGTTAAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAGTGGACAGTACAGCCTATAATACTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTACGCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAGGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTTTAAGAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGCAATGGACAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTACAAAAGATAGCCACAGAAAGCATAGTAATATGGGGAAAAACTCCTAAATTTAGACTACCTATACAAAAAGAAACATGGGAGACATGGTGGGCAGAGTACTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAATTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACTAAATTAGGCAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAGGTTATCTCCCTAACGGACACAACAAATCAAAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATCAGAAGTAAACATAGTAACAGACTCACAATATACATTAGGAATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAATCAGATAATAGAGCAGTTAATAAAAAAGGAAAAAGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGACAAACTAGTCAGTACTGGAGTCAGGAGAGTACTATTTCTAGATGGAATAGATAAGGCCCAAGAAGACCATGAGAAATATCACAGTAATTGGAGAGCAATGGCTGGTGATTTTAATATACCCCCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCAAAAAGGAGAGGCCATGCATGGACAAGTAGATTGTAGTCCAGGAATATGGCAACTAGATTGTACACATCTAGAAGGGAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTCTCCTGAAACTAGCAGGGAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTAATGTGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCCATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTATAGTGCAGGGGAAAGAATAGTAGATATAATAGCAACAGACCTACAAACTAAAGAATTACAGAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGGAGAAAAGCAAAAATCATTAGGGATTATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG -MK115527.1,vif,4931,5510,5040,5619,forward,0.35416666666666674,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH*,ATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATGTTTCAAAGAAAACTAAAGGATGGTTTTATAGACATCACTATGAAAGCACTCATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTGGTAGTAACAACATATTGGGGCCTGAATACAGGAGAAAGAGAATGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGAAAAAGGAAATATAGCACACAAGTTGACCCTAACCTAGCAGACCAACTAATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACATATAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGCTCTCTACAATACTTGGCACTAAAAGCATTAACAACACCAAAGAGAAGAAAGCCACCTTTACCTAGTGTTAGGAAACTGACAGAGGATAGATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAG -MK115527.1,vpr,5449,5743,5558,5850,forward,0.4038461538461544,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS*T,ATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAGAGCTTTTAGAGGAACTTAAGAATGAAGCGGTTAGACATTTTCCTAGGCCGTGGCTCCATGGCTTAGGACAACATATCTATGAAACTTATGGGGACACTTGGACAGGAGTGGAGGCCATAATAAGAACCCTGCAACAACTGCTGTTTATTCATTTCAGACTTGGGTGTCGACATAGCAGAATAGGCATTGTGCCACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACT -MK115527.1,tat_exon1,5720,5939,5830,6045,forward,0.29166666666666674,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ*,ATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCACCCAGGAAGTCAGCCTAAAACTCCTTGTACTAACTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAAAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGTAA -MK115527.1,rev_exon1,5859,5937,5969,6045,forward,0.5769230769230769,MAGRSGDSDEELLKAVRLIKILYQSS,MAGRSGDSDEELLKAVRLIKILYQSS,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGT -MK115527.1,vpu,5951,6197,6061,6310,forward,0.6865853658536587,MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAKDSGNESEGDQEELSALMEMGHHAPGDVDDL,MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAKDSGNESEGDQEELSALMEMGHHAPGDVDDL*,ATGCAACCTCTGCACATAGCAGCAATAGTAGGATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGACCATAGTGTTAATAGAATATAGGAAAATATTAAGACAAAAAAGGATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAAAAGACAGTGGCAATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAG -MK115527.1,env,6114,8655,6224,8795,forward,0.49135514018691584,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEAHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRNKMQKEYALFYKLDVVPIDNDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYENKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSETETFRPGGGDMKDNWRSELYKYKVEKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEAHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRNKMQKEYALFYKLDVVPIDNDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYENKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSETETFRPGGGDMKDNWRSELYKYKVEKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL*,ATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTGACAGTCTATTATGGGGTACCTGTATGGAAAGAAGCAAACACCACTCTATTTTGTGCATCGGATGCTAAAGCATATACCACAGAGGCACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGGATTGGAAAATGTGACAGAAAATTTTAACATGTGGAAAAATAACATGGTAGAACAGATGCATGAGGATGTAATCAATTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCACTAATCTGAATGTTACTAATACCAATAGCAGTAGTGAGGAGGGAAAGATGGCGGAAGAAATGAGAAACTGCTCTTTCAATATCACCACAAAAATAAGAAATAAGATGCAGAAGGAATATGCACTTTTTTATAAACTTGATGTAGTACCAATAGATAATGATAATACAAGTTATACATTGATAAATTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCTATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAGGATAAGAAGTTCAATGGATCAGGACCATGTAAAAATGTCAGCACAGTACAATGTACACATGGAATTAAGCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTTTAGCAGAAGAAGAGGTAGTAATTAGATCTGAAAATTTCACGAACAATGCTAAAACCATAATAGTACATCTGAAGGAACCTATACAAATTAATTGTACAAGACCCAACAACAATACAATGAAAAGTATCCCTCTAGGACCAGGAAGAGCATTCTATGCAACAGGAGCCATAATAGGAGATATAAGACAAGCACATTGTAACCTTAGTAGAAAAGCATGGAATAATACTTTAAAACAGGTAGTTGAAAAATTAAAAGAACAATATGAGAATAAAACAATAATCTTTAATCACTCCTCAGGAGGGGACCCAGAAATTATAATGCATACTTTTAATTGTGGAGGGGAATTTTTCTATTGTAATACAACACAGCTGTTTAATAGTACTTGGAATAGTACTTGGACTGGGAATGCTACCGAATTAGATGGAAACATCACACTCCCATGCAGAATAAAACAGATTATAAACAGGTGGCAAGAAGTAGGAAAAGCAATGTATGCCCCTCCCATTAGAGGAAAAATTAGATGTTCATCAAATATTACAGGGTTACTATTAGTAAGAGATGGTGGTAACACGAGCGAGACTGAGACCTTCAGACCTGGAGGAGGAGATATGAAGGACAATTGGAGGAGTGAATTATATAAATATAAAGTAGAAAAAATTGAGCCATTAGGAGTAGCACCCACCAGGGCAAAGAGAAGAGTGGTGCAAAGAGAAAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAAGCCAGGCTGTTATTGTCTGGTATAGTGCAACAGCAAAACAATTTGCTGAGAGCTATTGAGGCGCAACAACATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTACAGGATCAACAGCGCCTGGGAATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCCTGGAATGCTAGTTGGAGTAATAAATCTCTGAATCAGATTTGGGATAACATGACCTGGATGGAGTGGGAAAGAGAAATTAACAATTACACAGACACAATATACACCTTAATTGAAAAGGCGCAGAACCAGCAGGAAAAAAATGAACAAGAATTATTGGAATTGGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAAATGGCTGTGGTACATAAAATTATTCATAATGATAGTAGGAGGATTGATAGGTTTAAGAATAGTTTTTGCTGTACTTGCTATAGTAAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGCCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAGCTTATTCAATGTCACAGCCATCGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAAGAGCTTGTAGAGCTCTTCTCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCATTGTTATAA -MK115527.1,tat_exon2,8236,8332,8376,8469,forward,0.28666666666666596,RPTSQPRGDPTGPKESKKKVEKETETDQFD,RPTSQPRGDPTGPKESKKKVEKETETDQFD**,AGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGA -MK115527.1,rev_exon2,8237,8522,8377,8653,forward,0.39560439560439553,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVPLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVPLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE*CY*,GACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGCCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAG -MK115527.1,nef,8656,9277,8796,9417,forward,0.6162601626016186,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPMSLHGMEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPMSLHGMEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC*H*,ATGGGGGGCAAGTGGTCAAAAAGTAGTGGGGGTGGATGGCCTGCTGTAAGGGAAAGAATGAGACGAACTGAGCCAGCAGCAGAAGGGGTGGGAGCAGTATCTCGAGACCTGGAAAGACATGGAGCAGTCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGCGCCTGGCTGGAAGCACAAGAAGAGGACAGTGAAGTGGGTTTTCCAGTCAGACCTCAGGTGCCTTTAAGACCAATGACTTTCAAAGGAGCTCTCGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCCCAAAAAAGACAAGATATCCTTGACCTGTGGGTCTACAACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGACCAGATATCCACTGACCTTTGGGTGGTGTTTCAAGCTAGTACCAGTGGAGCCAGAAGAGGCCAATCAAGGAGAGAACAACTGCTTGTTACACCCTATGAGCCTGCATGGGATGGAGGACCCGGAAAAAGAAGTATTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCACATGGCCCGAGAGAAGCATCCGGAGTACTACAAAGACTGCTGACATTGA -MK114997.1,gag,210,1725,789,2292,forward,0.22980000000000023,MGARASVLSGGELDRWEKIYLRPGGKKKYRLKHIVWASRELERFAVNPGLLESSEGCRQILGQLQPSLQTGSEELRSLYNTVAVLYCVHQRINVKDTKEALDTIEEEQNKSKKKAQQAAADTGNSSNSQVSQNYPIVQNLQGQMVHQPISPSTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINDEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHTPPIPVGEIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFYKTLRAEQASQDVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSASIMAQGGNFRNQKRNVKCFNCGKEGHIARNCRAPRKKGCWKCGREGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPAESFRFGEEATAPPQKQETKDKELYPLASLRSLFGNDP,MGARASVLSGGELDRWEKIYLRPGGKKKYRLKHIVWASRELERFAVNPGLLESSEGCRQILGQLQPSLQTGSEELRSLYNTVAVLYCVHQRINVKDTKEALDTIEEEQNKSKKKAQQAAADTGNSSNSQVSQNYPIVQNLQGQMVHQPISPSTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINDEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHTPPIPVGEIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFYKTLRAEQASQDVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSASIMAQGGNFRNQKRNVKCFNCGKEGHIARNCRAPRKKGCWKCGREGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPAESFRFGEEATAPPQKQETKDKELYPLASLRSLFGNDP*YQ*E*,ATGGGTGCGAGAGCGTCAGTATTAAGCGGCGGAGAATTAGATAGATGGGAAAAAATTTACCTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTCAACCCTGGCCTGTTAGAGTCATCAGAAGGCTGCAGGCAAATTCTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAGATCATTATATAATACAGTAGCAGTCCTCTATTGCGTACATCAAAGGATAAATGTAAAAGACACCAAGGAAGCTCTAGACACAATAGAGGAAGAACAAAACAAAAGTAAGAAAAAGGCACAACAAGCAGCAGCTGACACAGGAAACAGCAGCAACAGCCAGGTCAGCCAAAATTACCCTATAGTGCAGAACCTACAGGGGCAAATGGTACATCAACCCATATCACCTAGCACTTTAAATGCATGGGTAAAAGTGATAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCACTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAGATGTTAAAAGAAACCATCAATGATGAGGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGCCCTATTGCACCAGGCCAGATGAGGGAACCAAGGGGAAGTGACATAGCAGGAACCACTAGTACCCTTCAGGAACAAATAGGATGGATGACACATACTCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCCTGGGGTTAAATAAAATAGTAAGAATGTATAGCCCTGTCAGCATTTTGGACATAAGACAAGGACCAAAGGAACCCTTTAGGGATTATGTAGATCGGTTCTATAAAACTCTAAGGGCTGAGCAAGCGTCACAGGATGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAACCCAGATTGTAAGACCATTTTAAAAGCATTAGGACCAGCAGCTACATTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGGGGACCCGGCCACAAGGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAACAAATTCAGCCTCCATAATGGCGCAAGGAGGCAATTTTAGGAACCAAAAAAGGAATGTTAAGTGTTTCAATTGTGGCAAAGAAGGACACATAGCCAGAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAGGGAAGGACACCAAATGAAAGATTGTACTGAGAGACAGGCTAATTTTTTAGGGAAGATTTGGCCTTCCCACAAGGGAAGGCCAGGGAATTTTCTCCAGAGCAGACCAGAGCCAACAGCCCCGCCAGCAGAGAGCTTCAGGTTTGGGGAAGAGGCAACAGCTCCCCCTCAGAAGCAGGAGACGAAGGACAAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCATAATATCAATAAGAATAG -MK114997.1,pol,1511,4601,2084,5096,forward,0.21934197407776668,FFREDLAFPQGKAREFSPEQTRANSPASRELQVWGRGNSSPSEAGDEGQGTVSFSFPQITLWQRPIISIRIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYDQVPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPRVKQWPLTEDKIKALIEICAEMEKEGKITKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKRKKSVTVLDVGDAYFSVPLDQDFRKYTAFTIPSINNEAPGVRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKENPDIVIYQYMDDLYVGSDLEIEQHRTKIEELRQHLLGWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPDKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTEVVPLTEEAELELAENREILKEPVHGAYYDPSKDLIAEVQKQGGDQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKIALEAIVIWGKTPKFKLPIQKETWEMWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIIGAETFYVDGAANRETKLGKAGYVTDRGRQKVVSLMDTTNQRTELHAIHLALQDSGSTVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHKGIGGNEQVDKLVSNGIRKILFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEPMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIAAETGQETAYFILKLAGRWPVKIIHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDSREPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKILRDYGKQMAGDDCVASRQDED,FFREDLAFPQGKAREFSPEQTRANSPASRELQVWGRGNSSPSEAGDEGQGTVSFSFPQITLWQRPIISIRIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYDQVPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPRVKQWPLTEDKIKALIEICAEMEKEGKITKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKRKKSVTVLDVGDAYFSVPLDQDFRKYTAFTIPSINNEAPGVRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKENPDIVIYQYMDDLYVGSDLEIEQHRTKIEELRQHLLGWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPDKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTEVVPLTEEAELELAENREILKEPVHGAYYDPSKDLIAEVQKQGGDQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKIALEAIVIWGKTPKFKLPIQKETWEMWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIIGAETFYVDGAANRETKLGKAGYVTDRGRQKVVSLMDTTNQRTELHAIHLALQDSGSTVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHKGIGGNEQVDKLVSNGIRKILFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEPMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIAAETGQETAYFILKLAGRWPVKIIHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDSREPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKILRDYGKQMAGDDCVASRQDED*NMEQFSKTPYAYFKESSEMGLQTSL*,TTTTTTAGGGAAGATTTGGCCTTCCCACAAGGGAAGGCCAGGGAATTTTCTCCAGAGCAGACCAGAGCCAACAGCCCCGCCAGCAGAGAGCTTCAGGTTTGGGGAAGAGGCAACAGCTCCCCCTCAGAAGCAGGAGACGAAGGACAAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCATAATATCAATAAGAATAGGAGGGCAACTAAAAGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAATTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGGTACCCATAGAAATTTGTGGACATAAAGCTATAGGTACAGTATTAATAGGACCTACACCAGTCAACATAATTGGAAGAAATCTGTTGACCCAGCTTGGTTGCACTTTAAATTTTCCCATCAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAGAGTTAAACAATGGCCATTGACAGAAGACAAAATAAAGGCATTAATAGAAATTTGTGCAGAAATGGAAAAGGAAGGGAAAATTACAAAAATTGGGCCTGAGAATCCATATAATACTCCAGTGTTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCCGAGAACTTAATAAGAGAACACAAGACTTCTGGGAAGTTCAACTAGGAATACCACATCCCGCAGGGTTAAAAAGGAAAAAATCAGTAACAGTACTAGATGTGGGTGATGCATATTTTTCAGTTCCTTTAGACCAAGACTTCAGAAAGTATACTGCATTTACCATACCCAGTATAAACAATGAGGCACCAGGAGTTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGGAAAATCCAGACATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGAGCAGCACAGAACAAAAATAGAGGAACTGAGACAACATCTGTTGGGGTGGGGACTCACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTTCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATACAGCTGCCAGACAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAGTTGAATTGGGCAAGCCAGATCTATCCAGGGATTAAAGTAAAGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAAGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAGATTCTAAAAGAACCAGTCCATGGAGCATATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGGGGAGACCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGGAAATATGCAAGAACGAGGGGTGCCCACACTAATGATGTAAAACAGTTAACAGAGGCAGTGCAAAAAATAGCCCTAGAAGCCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTACCTATACAAAAGGAAACATGGGAAATGTGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAATTTGTCAATACCCCTCCCTTAGTAAAATTATGGTACCAGTTAGAGAAAGAACCCATAATAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAGACTAAATTAGGAAAAGCAGGGTATGTTACGGACAGAGGAAGACAAAAGGTTGTCTCCCTAATGGACACAACAAATCAGAGGACTGAGTTACACGCAATTCATCTAGCTTTGCAGGATTCAGGATCAACAGTAAACATAGTAACAGACTCACAATATGCCTTAGGGATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAGTCAAATAATAGAGCAGCTAATAAAAAAGGAAAAGATTTACCTGGCATGGGTCCCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTAATGGAATCAGAAAAATACTATTTCTGGATGGAATAGATAAGGCCCAAGAAGAACATGAAAAATATCACAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAGTGTCAGTTAAAAGGAGAACCTATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAACTGGATTGTACACATTTAGAAGGAAAAATTATCCTGGTAGCAGTTCATGTAGCCAGTGGATACATAGAAGCAGAAGTTATTGCCGCAGAAACAGGGCAGGAAACAGCATACTTTATCTTAAAATTGGCAGGAAGATGGCCAGTAAAAATAATACATACAGACAATGGCAGCAATTTCACCAGCACTACGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGTATTCCCTACAATCCTCAAAGTCAAGGAGTAGTAGAATCTATGAATAATGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAATAGACATAATAGCAACAGACATACAAACTAAAGAACTACAAAAACAAATTTCAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGAACCACTTTGGAAAGGACCAGCAAAGCTCCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATCCTTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATATTTCAAAGAAAGCTCAGAGATGGGTTTACAGACATCACTATGA -MK114997.1,vif,4467,5046,5040,5619,forward,0.38020833333333326,MENRWQVMIVWQVDRMRIRTWNSLVKHHMHISKKAQRWVYRHHYESHNPKTSSEVHIPLGEARLVIKTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPSLADQLIHLYYFDCFSESAIRNAILGHRVSPRCEYQAGHNKVGSLQYLALTALITPKRRKPPLPSVTKLTEDRWNKSQRTKGHKGSHTMNGH,MENRWQVMIVWQVDRMRIRTWNSLVKHHMHISKKAQRWVYRHHYESHNPKTSSEVHIPLGEARLVIKTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPSLADQLIHLYYFDCFSESAIRNAILGHRVSPRCEYQAGHNKVGSLQYLALTALITPKRRKPPLPSVTKLTEDRWNKSQRTKGHKGSHTMNGH*,ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATATTTCAAAGAAAGCTCAGAGATGGGTTTACAGACATCACTATGAAAGCCATAATCCAAAAACAAGTTCAGAAGTACACATCCCATTAGGGGAAGCAAGATTGGTAATAAAAACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCATTTGGGCCAGGGAGTATCCATAGAATGGAGGAAAAGGAGATATAGCACACAAGTAGACCCTAGCCTGGCAGACCAACTAATTCACCTGTATTATTTTGATTGTTTTTCAGAATCTGCTATAAGGAATGCCATATTAGGACATAGAGTTAGCCCTAGGTGTGAATATCAGGCAGGACATAACAAGGTAGGATCCCTACAATACTTGGCATTAACAGCATTAATAACACCAAAAAGGAGAAAGCCACCCTTGCCCAGTGTTACAAAATTAACAGAGGACAGATGGAACAAGTCCCAGAGGACCAAGGGCCACAAAGGGAGCCATACAATGAATGGACATTAG -MK114997.1,vpr,4985,5279,5558,5850,forward,0.44230769230769296,MEQVPEDQGPQREPYNEWTLELLEELKSEAVRHFPRPWLHSLGQYIYETYGDTWAGVEAIIRILQQLLFIHFRIGCQHSRIGIIRQRRARNGASRS,MEQVPEDQGPQREPYNEWTLELLEELKSEAVRHFPRPWLHSLGQYIYETYGDTWAGVEAIIRILQQLLFIHFRIGCQHSRIGIIRQRRARNGASRS*L,ATGGAACAAGTCCCAGAGGACCAAGGGCCACAAAGGGAGCCATACAATGAATGGACATTAGAGCTCTTAGAAGAGCTTAAGAGTGAAGCTGTTAGGCATTTTCCTAGACCATGGCTTCATAGCTTAGGACAATATATCTATGAAACTTATGGAGATACTTGGGCAGGGGTGGAAGCCATAATAAGAATCCTGCAACAACTGTTGTTCATTCATTTCAGAATTGGGTGTCAACATAGCAGGATAGGAATTATTCGACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGCTT -MK114997.1,tat_exon1,5256,5472,5830,6045,forward,0.5694444444444444,MEPVDPSLEPWKHPGSQPMTACNNCYCKRCCFHCQVCFTTKGLGISYGRKKRRQRRRASHSSQNHQAALPEQ,MEPVDPSLEPWKHPGSQPMTACNNCYCKRCCFHCQVCFTTKGLGISYGRKKRRQRRRASHSSQNHQAALPEQ,ATGGAGCCAGTAGATCCTAGCTTAGAGCCCTGGAAACATCCAGGAAGTCAACCTATGACTGCTTGTAACAATTGCTATTGTAAACGGTGTTGCTTTCATTGCCAAGTTTGCTTCACCACAAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTTCTCACAGCAGTCAGAATCATCAAGCGGCTCTACCAGAGCAG -MK114997.1,rev_exon1,5395,5473,5969,6045,forward,0.6538461538461537,MAGRSGDSDEELLTAVRIIKRLYQSS,MAGRSGDSDEELLTAVRIIKRLYQSS,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTTCTCACAGCAGTCAGAATCATCAAGCGGCTCTACCAGAGCAGT -MK114997.1,vpu,5487,5733,6061,6310,forward,0.751219512195122,MHALKIAAIVGLVVATIIAIVVWSIVLIEYRKILRQRKIDRLIDRIRERAEDSGNESDGDQEELSALVEMGHLVPWDGDDM,MHALKIAAIVGLVVATIIAIVVWSIVLIEYRKILRQRKIDRLIDRIRERAEDSGNESDGDQEELSALVEMGHLVPWDGDDM*,ATGCATGCCTTAAAAATAGCAGCAATAGTAGGATTAGTAGTAGCAACAATAATAGCAATAGTTGTGTGGTCTATAGTATTAATAGAATATAGGAAAATTTTAAGACAAAGGAAAATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAAAGTGACGGAGACCAGGAGGAATTATCAGCACTTGTGGAGATGGGGCATCTTGTTCCTTGGGATGGTGATGATATGTAG -MK114997.1,env,5762,8216,6224,8795,forward,1.2265186915887858,MHSFNCGGEFFYCNTTQLFNSTWNGTDNWNGTESNNTITLPCRIKQIINLWQEVGRAMYAPPIQGQIRCSSNITGLLLVRDGGSNNSSNDTETFRPGGGDMRDNWRSELYKYKVVKIEPLGIAPTHAKRRVVQREKRAVGLGAFFLGFLGAAGSTMGAASVTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLALERYLKDQQLLGIWGCSGKLICTTNVPWNISWSPRWNRSLDEIWTNMTWRQWEKEIDNYTDTIYNLIELSQNQQEQNEQDLLALDKWASLWSWFDITQWLWYIKIFIMIVGGLIGLRIVFTILSIVNRVRQGYSPLSLQTLLPTQRGPDRPEGTEEGGGERDRGTSTRLVHGFLALIWDDLRSLFLFSYHRLRDLLLIAARIVELLGRRGWEALKYWWNLLQYWSQEIKNSAVSLLNTTAIAVAEGTDRIIEVLQRGFRAILHIPTRIRQGLERALL,MGYLYGKKQLPLYFVHQMLKHMRQRSIMFGQPMPVYPQTPAHRK*H*KM*QKHLTCGKMTW*SRCMRI*SVYGIKA*SHV*N*PHSVLL*IALIV*VIILIII*RKKEK*KTALSMSPQE*EIG*QKNMHFSIDLM*YQ*MKIVEILRANIG**IVTPQSLHKPVQRYPLSQFPYIFVPRLVLRF*SVEIRNSMEQENVEMSAQYNVHMELGQ*YQLNCC*TAV*QKKR**LDLPISRTMLKP**YS*INL*KLIVQDPTIIQEEVYT*DQGEHFMEQT**GI*DKRIVTLVGKIGMTL*KKIVIKLKEKFENKTIVFNQSSGGDPEIVMHSFNCGGEFFYCNTTQLFNSTWNGTDNWNGTESNNTITLPCRIKQIINLWQEVGRAMYAPPIQGQIRCSSNITGLLLVRDGGSNNSSNDTETFRPGGGDMRDNWRSELYKYKVVKIEPLGIAPTHAKRRVVQREKRAVGLGAFFLGFLGAAGSTMGAASVTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLALERYLKDQQLLGIWGCSGKLICTTNVPWNISWSPRWNRSLDEIWTNMTWRQWEKEIDNYTDTIYNLIELSQNQQEQNEQDLLALDKWASLWSWFDITQWLWYIKIFIMIVGGLIGLRIVFTILSIVNRVRQGYSPLSLQTLLPTQRGPDRPEGTEEGGGERDRGTSTRLVHGFLALIWDDLRSLFLFSYHRLRDLLLIAARIVELLGRRGWEALKYWWNLLQYWSQEIKNSAVSLLNTTAIAVAEGTDRIIEVLQRGFRAILHIPTRIRQGLERALL*DG*,ATGGGGTACCTGTATGGAAAGAAGCAACTACCACTCTATTTTGTGCATCAGATGCTAAAGCATATGAGACAGAGAAGCATAATGTTTGGGCAACCCATGCCTGTGTACCCACAGACCCCAGCCCACAGGAAGTAGCATTGAAAAATGTGACAGAAACATTTAACATGTGGAAAAATGACATGGTAGAGCAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGCCTAAAGCCATGTGTGAAACTAACCCCACTCTGTGTTACTTTAAATTGCACTGATAGTTTAAGTAATAATACTAATTATAATATAACGGAAAAAGGAGAAATAAAAAACTGCTCTTTCAATGTCACCACAGGAATAAGAGATAGGGTGACAAAAGAACATGCACTTTTCTATAGACTTGATGTAGTATCAATAGATGAAGATAGTGGAAATACTACGGGCAAATATAGGATGATAAATTGTAACACCTCAGTCATTACACAAGCCTGTCCAAAGATATCCTTTGAGCCAATTCCCATACATTTTTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAGAGATAAGAAATTCAATGGAACAGGAGAATGTAGAAATGTCAGCACAGTACAATGTACACATGGAATTAGGCCAGTAGTATCAACTCAACTGCTGCTGAACGGCAGTCTAGCAGAAGAAGAGATAGTAATTAGATCTGCCAATCTCTCGAACAATGCTAAAACCATAATAGTACAGCTGAATAAACCTGTAAAAATTAATTGTACAAGACCCAACAATAATACAAGAAGAAGTATACACATAGGACCAGGGAGAGCATTTTATGGAACAGACATAATAGGGGATATAAGACAAGCGCATTGTAACATTAGTGGGAAAGATTGGAATGACACTTTAAAAAAAGATAGTTATAAAATTAAAAGAAAAATTTGAGAATAAAACAATAGTCTTTAATCAATCCTCAGGAGGGGACCCAGAGATAGTGATGCATAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAATACAACACAGCTGTTTAATAGTACTTGGAATGGTACTGATAATTGGAATGGTACTGAATCAAATAACACTATCACACTCCCATGCAGAATAAAACAAATTATAAACTTGTGGCAGGAAGTAGGAAGAGCAATGTATGCTCCTCCCATCCAAGGGCAAATTAGATGTTCATCAAATATTACAGGGCTGCTGCTAGTAAGAGATGGTGGGAGCAACAATAGTAGTAATGATACAGAGACATTCAGGCCTGGAGGAGGAGATATGAGGGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTCAAAATTGAACCATTAGGAATAGCACCCACCCATGCAAAGAGAAGAGTGGTGCAAAGGGAAAAAAGAGCAGTGGGACTTGGAGCTTTCTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAGCAGCAAAACAATTTGCTGAGAGCTATTGAGGCGCAACAGCATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTCTGGAAAGATACCTAAAGGATCAACAGCTCCTGGGGATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTAATGTGCCCTGGAATATTAGTTGGAGCCCTAGATGGAATAGATCTCTAGATGAGATTTGGACTAACATGACCTGGAGGCAGTGGGAAAAGGAAATTGACAATTACACAGACACAATATATAACTTAATTGAACTATCACAGAACCAACAAGAACAGAATGAACAAGACTTATTGGCATTAGATAAGTGGGCAAGTTTGTGGAGTTGGTTTGACATTACACAGTGGCTATGGTATATAAAAATATTCATAATGATAGTAGGAGGCTTGATAGGTTTAAGAATAGTTTTTACTATACTGTCTATAGTGAATAGAGTTAGGCAGGGATACTCACCATTGTCATTGCAGACCCTCCTCCCAACCCAGAGGGGACCCGACAGGCCCGAAGGAACAGAAGAAGGAGGTGGAGAGAGAGACAGAGGCACATCCACGAGATTAGTGCATGGATTCTTAGCACTCATCTGGGACGACCTGCGGAGCCTGTTCCTCTTCAGTTACCACCGCTTGAGAGACTTACTCTTGATTGCGGCGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCACTGAAGTATTGGTGGAATCTCCTGCAGTATTGGAGTCAGGAAATAAAGAATAGTGCAGTTAGCTTGCTCAACACCACAGCAATAGCAGTAGCTGAGGGGACAGATAGGATTATAGAAGTACTACAAAGAGGCTTTAGAGCTATTCTCCACATACCTACACGAATAAGACAGGGCTTAGAAAGGGCTTTGCTATAAGATGGGTAA -MK114997.1,tat_exon2,7788,7881,8376,8469,forward,0.4866666666666659,RPSSQPRGDPTGPKEQKKEVERETEAHPRD,RPSSQPRGDPTGPKEQKKEVERETEAHPRD*,AGACCCTCCTCCCAACCCAGAGGGGACCCGACAGGCCCGAAGGAACAGAAGAAGGAGGTGGAGAGAGAGACAGAGGCACATCCACGAGATTAG -MK114997.1,rev_exon2,7789,8065,8377,8653,forward,0.4285714285714286,DPPPNPEGTRQARRNRRRRWRERQRHIHEISAWILSTHLGRPAEPVPLQLPPLERLTLDCGEDCGTSGTQGVGSTEVLVESPAVLESGNKE,DPPPNPEGTRQARRNRRRRWRERQRHIHEISAWILSTHLGRPAEPVPLQLPPLERLTLDCGEDCGTSGTQGVGSTEVLVESPAVLESGNKE*,GACCCTCCTCCCAACCCAGAGGGGACCCGACAGGCCCGAAGGAACAGAAGAAGGAGGTGGAGAGAGAGACAGAGGCACATCCACGAGATTAGTGCATGGATTCTTAGCACTCATCTGGGACGACCTGCGGAGCCTGTTCCTCTTCAGTTACCACCGCTTGAGAGACTTACTCTTGATTGCGGCGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCACTGAAGTATTGGTGGAATCTCCTGCAGTATTGGAGTCAGGAAATAAAGAATAG -MK114997.1,nef,8208,8856,8796,9417,forward,0.7959349593495859,MGNKLSRGLRAGWPAIRERMRRARPVREPEPAAAGVGAASRDLERHGALTSSNTAATNADVACLEAQQEEEEVGFPVRPQVPLRPMTFKGALDISHFLKEKGGLDGLIYSKRRQDILDLWLYNTQGYFPDWQNYTPGPGVRFPLCFGWCFKLVPVDPDKVEEASVGENNCLLSPENLHGMEDEHREVLQWRFDSRLAFHHMARELHPEYFKDC,MGNKLSRGLRAGWPAIRERMRRARPVREPEPAAAGVGAASRDLERHGALTSSNTAATNADVACLEAQQEEEEVGFPVRPQVPLRPMTFKGALDISHFLKEKGGLDGLIYSKRRQDILDLWLYNTQGYFPDWQNYTPGPGVRFPLCFGWCFKLVPVDPDKVEEASVGENNCLLSPENLHGMEDEHREVLQWRFDSRLAFHHMARELHPEYFKDC*H*,ATGGGTAACAAGTTGTCAAGAGGGCTCAGGGCTGGATGGCCTGCCATAAGGGAGAGAATGAGACGAGCTAGGCCAGTAAGAGAGCCAGAGCCAGCAGCAGCTGGGGTGGGAGCAGCATCTCGAGACCTGGAAAGACATGGAGCACTTACAAGTAGCAATACAGCAGCTACCAATGCTGATGTTGCCTGCCTGGAAGCACAACAGGAGGAGGAAGAGGTGGGTTTTCCAGTCAGACCTCAGGTACCTTTAAGGCCAATGACTTTCAAGGGAGCTCTAGATATTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGATGGGCTAATTTACTCCAAAAGAAGACAAGACATCCTTGATCTGTGGCTCTACAACACACAAGGCTACTTCCCTGACTGGCAGAACTACACACCAGGGCCAGGAGTCAGATTTCCACTGTGTTTTGGATGGTGCTTCAAGCTAGTACCAGTTGATCCAGATAAGGTAGAAGAGGCCAGTGTAGGAGAGAACAACTGCTTGTTAAGCCCCGAAAACCTTCATGGAATGGAGGACGAACACAGAGAAGTATTGCAGTGGAGGTTTGACAGTCGCCTAGCATTTCATCACATGGCCCGAGAGCTGCATCCGGAATATTTCAAGGACTGCTGACACTGA -MK115518.1,gag,739,2245,789,2292,forward,0.2571999999999999,MGARASILSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWTTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSANVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE,MGARASILSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWTTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSANVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE*R*,ATGGGTGCGAGAGCGTCAATATTAAGCGGGGGAAAATTAGATGCATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATTTAGTATGGGCAAGCAGGGAGCTAGAACGATTTGCCGTTAACCCTGGCCTGTTAGAAACATCAGAGGGATGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATTTAATGCAGTAGCAGTCCTCTATTGTGTACATCAAAGGATACAGGTACAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGTAGCAGCAGCTGACACTGACACAGGAAACAGCAGCCAAAATTACCCCATAGTGCAGAACCTCCAGGGGCAAATGGTACATCAGCCCCTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAAAAGGCCTTCAGCCCAGAAGTCATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGACGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCTTGGGATTAAATAAAATAGTAAGGATGTATAGCCCTACCAGTATTCTGGATATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAGAACTTTAAGAGCTGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATTCGAATCCAGATTGTAAGACTATTTTAAAAGCATTAGGACCAGCAGCAACACTAGAGGAAATGATGACAGCATGTCAAGGAGTGGGGGGACCAGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAAATTCAGCTAATGTAATGATGCAGAGAGGCAATTTTAGAAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACATCAAATGAAAGACTGTACAGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAG -MK115518.1,pol,2031,5043,2084,5096,forward,0.14755732801595212,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSTGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSTGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAGGGGGGCAATTTAAAGAAGCTTTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACCCATAGAAATCTGTGGACACAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGCTTGGTTGTACCTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTCAATAAGAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAATTCCCTTAGATAAAGAATTCAGGAAGTATACTGCATTTACCATACCTAGTACAAATAATGAGACACCAGGGATTAGGTATGAGTACAATGTGCTGCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGCAAAATCCAGATATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAACTGAGACAACATCTGTTAAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAGTGGACAGTACAGCCTATAATACTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTACGCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAGGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTTTAAGAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGCAATGGACAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTACAAAAGATAGCCACAGAAAGCATAGTAATATGGGGAAAAACTCCTAAATTTAGACTACCTATACAAAAAGAAACATGGGAGACATGGTGGGCAGAGTACTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAATTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACTAAATTAGGCAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAGGTTATCTCCCTAACGGACACAACAAATCAAAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATCAGAAGTAAACATAGTAACAGACTCACAATATACATTAGGAATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAATCAGATAATAGAGCAGTTAATAAAAAAGGAAAAAGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGACAAACTAGTCAGTACTGGAGTCAGGAGAGTACTATTTCTAGATGGAATAGATAAGGCCCAAGAAGACCATGAGAAATATCACAGTAATTGGAGAGCAATGGCTGGTGATTTTAATATACCCCCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCAAAAAGGAGAGGCCATGCATGGACAAGTAGATTGTAGTCCAGGAATATGGCAACTAGATTGTACACATCTAGAAGGGAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTCTCCTGAAACTAGCAGGGAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTAATGTGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCCATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTATAGTGCAGGGGAAAGAATAGTAGATATAATAGCAACAGACCTACAAACTAAAGAATTACAGAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGGAGAAAAGCAAAAATCATTAGGGATTATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG -MK115518.1,vif,4987,5566,5040,5619,forward,0.35416666666666674,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH*,ATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATGTTTCAAAGAAAACTAAAGGATGGTTTTATAGACATCACTATGAAAGCACTCATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTGGTAGTAACAACATATTGGGGCCTGAATACAGGAGAAAGAGAATGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGAAAAAGGAAATATAGCACACAAGTTGACCCTAACCTAGCAGACCAACTAATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACATATAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGCTCTCTACAATACTTGGCACTAAAAGCATTAACAACACCAAAGAGAAGAAAGCCACCTTTACCTAGTGTTAGGAAACTGACAGAGGATAGATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAG -MK115518.1,vpr,5505,5799,5558,5850,forward,0.4038461538461544,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS*T,ATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAGAGCTTTTAGAGGAACTTAAGAATGAAGCGGTTAGACATTTTCCTAGGCCGTGGCTCCATGGCTTAGGACAACATATCTATGAAACTTATGGGGACACTTGGACAGGAGTGGAGGCCATAATAAGAACCCTGCAACAACTGCTGTTTATTCATTTCAGACTTGGGTGTCGACATAGCAGAATAGGCATTGTGCCACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACT -MK115518.1,tat_exon1,5776,5995,5830,6045,forward,0.29166666666666674,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ*,ATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCACCCAGGAAGTCAGCCTAAAACTCCTTGTACTAACTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAAAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGTAA -MK115518.1,rev_exon1,5915,5996,5969,6045,forward,0.6346153846153846,MAGRSGDSDEELLKAVRLIKILYQSSK,MAGRSGDSDEELLKAVRLIKILYQSSK,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGTAAG -MK115518.1,vpu,6007,6253,6061,6310,forward,0.6865853658536587,MQPLHIAAIVGLIVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAEDSGNESEGDQEELSALMEMGHHAPGDVDDL,MQPLHIAAIVGLIVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAEDSGNESEGDQEELSALMEMGHHAPGDVDDL*,ATGCAACCTCTGCACATAGCAGCAATAGTAGGATTAATAGTAGCAGCAATAATAGCAATAGTTGTGTGGACCATAGTGTTAATAGAATATAGGAAAATATTAAGACAAAAAAGGATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAG -MK115518.1,env,6170,8711,6224,8795,forward,0.49018691588785046,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTPEAHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRNKMQKEYALFYKLDVVPIDNDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYENKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSETETFRPGGGDMKDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTPEAHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRNKMQKEYALFYKLDVVPIDNDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYENKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSETETFRPGGGDMKDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL*,ATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTGACAGTCTATTATGGGGTACCTGTATGGAAAGAAGCAAACACCACTCTATTTTGTGCATCGGATGCTAAAGCATATACCCCAGAGGCACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGGATTGGAAAATGTGACAGAAAATTTTAACATGTGGAAAAATAACATGGTAGAACAGATGCATGAGGATGTAATCAATTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCACTAATCTGAATGTTACTAATACCAATAGCAGTAGTGAGGAGGGAAAGATGGCGGAAGAAATGAGAAACTGCTCTTTCAATATCACCACAAAAATAAGAAATAAGATGCAGAAGGAATATGCACTTTTTTATAAACTTGATGTAGTACCAATAGATAATGATAATACAAGTTATACATTGATAAATTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCTATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAGGATAAGAAGTTCAATGGATCAGGACCATGTAAAAATGTCAGCACAGTACAATGTACACATGGAATTAAGCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTTTAGCAGAAGAAGAGGTAGTAATTAGATCTGAAAATTTCACGAACAATGCTAAAACCATAATAGTACATCTGAAGGAACCTATACAAATTAATTGTACAAGACCCAACAACAATACAATGAAAAGTATCCCTCTAGGACCAGGAAGAGCATTCTATGCAACAGGAGCCATAATAGGAGATATAAGACAAGCACATTGTAACCTTAGTAGAAAAGCATGGAATAATACTTTAAAACAGGTAGTTGAAAAATTAAAAGAACAATATGAGAATAAAACAATAATCTTTAATCACTCCTCAGGAGGGGACCCAGAAATTATAATGCATACTTTTAATTGTGGAGGGGAATTTTTCTATTGTAATACAACACAGCTGTTTAATAGTACTTGGAATAGTACTTGGACTGGGAATGCTACCGAATTAGATGGAAACATCACACTCCCATGCAGAATAAAACAGATTATAAACAGGTGGCAAGAAGTAGGAAAAGCAATGTATGCCCCTCCCATTAGAGGAAAAATTAGATGTTCATCAAATATTACAGGGTTACTATTAGTAAGAGATGGTGGTAACACGAGCGAGACTGAGACCTTCAGACCTGGAGGAGGAGATATGAAGGACAATTGGAGGAGTGAATTATATAAATATAAAGTAGTAAAAATTGAGCCATTAGGAGTAGCACCCACCAGGGCAAAGAGAAGAGTGGTGCAAAGAGAAAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAAGCCAGGCTGTTATTGTCTGGTATAGTGCAACAGCAAAACAATTTGCTGAGAGCTATTGAGGCGCAACAACATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTACAGGATCAACAGCGCCTGGGAATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCCTGGAATGCTAGTTGGAGTAATAAATCTCTGAATCAGATTTGGGATAACATGACCTGGATGGAGTGGGAAAGAGAAATTAACAATTACACAGACACAATATACACCTTAATTGAAAAGGCGCAGAACCAGCAGGAAAAGAATGAACAAGAATTATTGGAATTGGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAAATGGCTGTGGTACATAAAATTATTCATAATGATAGTAGGAGGATTGATAGGTTTAAGAATAGTTTTTGCTGTACTTGCTATAGTAAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGCCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAGCTTATTCAATGTCACAGCCATCGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAAGAGCTTGTAGAGCTCTTCTCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCATTGTTATAA -MK115518.1,tat_exon2,8292,8388,8376,8469,forward,0.28666666666666596,RPTSQPRGDPTGPKESKKKVEKETETDQFD,RPTSQPRGDPTGPKESKKKVEKETETDQFD**,AGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGA -MK115518.1,rev_exon2,8293,8578,8377,8653,forward,0.39560439560439553,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVPLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVPLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE*CY*,GACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGCCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAG -MK115518.1,nef,8712,9333,8796,9417,forward,0.6162601626016186,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPTSLHGMEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPTSLHGMEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC*H*,ATGGGGGGCAAGTGGTCAAAAAGTAGTGGGGGTGGATGGCCTGCTGTAAGGGAAAGAATGAGACGAACTGAGCCAGCAGCAGAAGGGGTGGGAGCAGTATCTCGAGACCTGGAAAGACATGGAGCAGTCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGCGCCTGGCTGGAAGCACAAGAAGAGGACAGTGAAGTGGGTTTTCCAGTCAGACCTCAGGTGCCTTTAAGACCAATGACTTTCAAAGGAGCTCTCGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCCCAAAAAAGACAAGATATCCTTGACCTGTGGGTCTACAACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGACCAGATATCCACTGACCTTTGGGTGGTGTTTCAAGCTAGTACCAGTGGAGCCAGAAGAGGCCAATCAAGGAGAGAACAACTGCTTGTTACACCCTACGAGCCTGCATGGGATGGAGGACCCGGAAAAAGAAGTATTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCACATGGCCCGAGAGAAGCATCCGGAGTACTACAAAGACTGCTGACATTGA -MK115065.1,gag,221,1736,789,2292,forward,0.24380000000000024,MGARASVLSGGELDRWEKIYLRPGGKKKYRLKHIVWASRELERFAVNPGLLESSEGCRQILGQLQPALQTGSEELRSLYNTVAVLYCVHPRINVKDTKEALDKIEEEQNKSKKKAQQAAADTGNSSNSQVSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINAEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHNPPIPVGDIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFYKTLRAEQASQDVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTKSASIMVQGGNFRNQRRNVKCFNCGKEGHTAKNCRAPRKKGCWKCGREGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPAESFRFGEEATAPPQKQETKDQELYPLASLRSLFGNDP,MGARASVLSGGELDRWEKIYLRPGGKKKYRLKHIVWASRELERFAVNPGLLESSEGCRQILGQLQPALQTGSEELRSLYNTVAVLYCVHPRINVKDTKEALDKIEEEQNKSKKKAQQAAADTGNSSNSQVSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINAEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHNPPIPVGDIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFYKTLRAEQASQDVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTKSASIMVQGGNFRNQRRNVKCFNCGKEGHTAKNCRAPRKKGCWKCGREGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPAESFRFGEEATAPPQKQETKDQELYPLASLRSLFGNDP*YQ*K*,ATGGGTGCGAGAGCGTCAGTATTAAGCGGCGGAGAATTAGATAGATGGGAAAAAATTTACCTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTCAACCCTGGCCTGTTAGAGTCATCAGAAGGCTGCAGGCAAATTCTGGGACAGCTACAACCAGCCCTTCAGACAGGATCAGAAGAACTTAGATCATTATATAATACAGTAGCAGTCCTCTATTGCGTACATCCAAGGATAAATGTAAAAGACACCAAAGAAGCTCTAGACAAAATAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAACAAGCAGCAGCTGACACAGGAAACAGCAGCAACAGCCAGGTCAGCCAAAATTACCCTATAGTGCAGAACCTACAGGGGCAAATGGTACATCAACCCTTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAATAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCACTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAGATGTTAAAAGAAACCATCAATGCTGAGGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGCCCTATTGCACCAGGCCAGATGAGGGAACCAAGGGGAAGTGACATAGCAGGAACCACTAGTACCCTTCAGGAACAAATAGGATGGATGACACATAATCCACCTATCCCAGTAGGAGATATCTATAAAAGATGGATAATCCTGGGGTTAAATAAAATAGTAAGAATGTATAGCCCTGTCAGCATTTTGGACATAAGACAAGGACCAAAGGAACCCTTTAGGGATTATGTAGACCGGTTCTATAAAACTCTAAGGGCTGAGCAAGCGTCACAGGATGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAATCCAGATTGTAAGACCATTTTAAAAGCATTAGGACCAGCAGCTACATTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGGGGACCCGGCCACAAGGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAACAAAATCAGCCTCCATAATGGTGCAGGGAGGCAATTTTAGGAACCAAAGAAGGAATGTTAAGTGTTTCAATTGTGGCAAAGAAGGACACACAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAGGGAAGGACACCAAATGAAAGATTGTACTGAGAGACAGGCTAATTTTTTAGGGAAGATTTGGCCTTCCCACAAGGGAAGGCCAGGGAATTTTCTCCAGAGCAGACCAGAGCCAACAGCCCCGCCAGCAGAGAGCTTCAGGTTTGGGGAAGAGGCAACAGCTCCCCCTCAGAAGCAGGAGACGAAGGACCAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCATAATATCAATAAAAATAG -MK115065.1,pol,1522,4534,2084,5096,forward,0.20438683948155534,FFREDLAFPQGKAREFSPEQTRANSPASRELQVWGRGNSSPSEAGDEGPGTVSFSFPQITLWQRPIISIKIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPRVKQWPLTEEKIKALIEICAEMEKEGKITKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNEAPGVRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKENPDIVIYQYMDDLYVGSDLEIEQHRTKIEELRQHLLGWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPDKDSWTINDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTEVVPLTEEAELELAENREILKEPVHGAYYDPSKDLIAEVQKQGGDQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKIALEAIVIWGKTPKFKLPIQKETWEMWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVVSLMDTTNQRTELHAIHLALQDSGSTVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHKGIGGNEQVDKLVSSGIRKVLFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEPMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIAAETGQETAYFILKLAGRWPVKIIHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDSREPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKILRDYGKQMAGDDCVASRQDED,FFREDLAFPQGKAREFSPEQTRANSPASRELQVWGRGNSSPSEAGDEGPGTVSFSFPQITLWQRPIISIKIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPRVKQWPLTEEKIKALIEICAEMEKEGKITKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNEAPGVRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKENPDIVIYQYMDDLYVGSDLEIEQHRTKIEELRQHLLGWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPDKDSWTINDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTEVVPLTEEAELELAENREILKEPVHGAYYDPSKDLIAEVQKQGGDQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKIALEAIVIWGKTPKFKLPIQKETWEMWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVVSLMDTTNQRTELHAIHLALQDSGSTVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHKGIGGNEQVDKLVSSGIRKVLFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEPMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIAAETGQETAYFILKLAGRWPVKIIHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDSREPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKILRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAGATTTGGCCTTCCCACAAGGGAAGGCCAGGGAATTTTCTCCAGAGCAGACCAGAGCCAACAGCCCCGCCAGCAGAGAGCTTCAGGTTTGGGGAAGAGGCAACAGCTCCCCCTCAGAAGCAGGAGACGAAGGACCAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCATAATATCAATAAAAATAGGAGGGCAACTAAAAGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAATTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACCCATAGAAATTTGTGGACATAAAGCTATAGGTACAGTATTAATAGGACCTACACCAGTCAACATAATTGGAAGAAATCTGTTGACCCAGCTTGGTTGCACTTTAAATTTTCCCATCAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAGAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAGGCATTAATAGAAATTTGTGCAGAAATGGAAAAGGAAGGGAAAATTACAAAAATTGGGCCTGAGAATCCATATAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCCGAGAACTTAATAAGAGAACACAAGACTTCTGGGAAGTTCAACTAGGAATACCACATCCCGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTAGATGTGGGTGATGCATATTTTTCAGTTCCTTTAGACAAAGACTTCAGAAAGTATACTGCATTTACCATACCCAGTATAAACAATGAGGCACCAGGAGTTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGGAAAATCCAGACATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGATTTAGAAATAGAGCAGCACAGAACAAAAATAGAGGAACTGAGACAACATCTGTTGGGGTGGGGACTCACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTTCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATACAGCTGCCAGACAAAGACAGCTGGACTATCAATGACATACAGAAGTTAGTGGGAAAGTTGAATTGGGCAAGCCAAATCTATCCAGGGATTAAAGTAAAGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAAGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAGATTCTAAAAGAACCAGTACATGGAGCATATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGGGGAGACCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGGAAATATGCAAGAACGAGGGGTGCCCACACTAATGATGTAAAACAGTTAACAGAGGCAGTGCAAAAAATAGCCCTAGAAGCCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTACCTATACAAAAGGAAACATGGGAAATGTGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAATTTGTCAATACCCCTCCCTTAGTAAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAGACTAAATTAGGAAAAGCAGGGTATGTTACGGACAGAGGAAGACAAAAGGTTGTCTCCCTAATGGACACAACAAATCAGAGGACTGAGTTACACGCTATTCATCTAGCTTTGCAGGATTCAGGATCAACAGTAAACATAGTGACAGACTCACAATATGCCTTAGGGATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAGTCAAATAATAGAGCAGCTAATAAAAAAGGAAAAGATTTACCTGGCATGGGTCCCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTAGTGGAATCAGAAAAGTACTATTTCTGGATGGAATAGATAAGGCCCAAGAAGAACATGAAAAATATCACAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAGTGTCAGTTAAAAGGAGAACCTATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAACTGGATTGTACACATTTAGAAGGAAAAATTATCCTGGTAGCAGTTCATGTAGCCAGTGGATACATAGAAGCAGAAGTTATTGCAGCAGAAACAGGGCAGGAAACAGCATACTTTATCTTAAAATTGGCAGGAAGATGGCCAGTAAAAATAATACATACAGACAATGGCAGCAATTTCACCAGCACTACGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGTATTCCCTACAATCCTCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAATAGACATAATAGCAACAGACATACAAACTAAAGAACTACAAAAACAAATTTCAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGAACCACTTTGGAAAGGACCAGCAAAGCTCCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATCCTTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG -MK115065.1,vif,4478,5057,5040,5619,forward,0.38020833333333326,MENRWQVMIVWQVDRMRIRTWNSLVKHHMHISKKAQRWVYRHHYESHNPKTSSEVHIPLGEARLVIKTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPGLADQLIHLYYFDCFSESAIRNAILGHRVSPRCEYQAGHNKVGSLQYLALTALITPKRRKPPLPSVTKLTEDRWNKSQRTKGHKGSHTMNGH,MENRWQVMIVWQVDRMRIRTWNSLVKHHMHISKKAQRWVYRHHYESHNPKTSSEVHIPLGEARLVIKTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPGLADQLIHLYYFDCFSESAIRNAILGHRVSPRCEYQAGHNKVGSLQYLALTALITPKRRKPPLPSVTKLTEDRWNKSQRTKGHKGSHTMNGH*,ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATATTTCAAAGAAAGCTCAGAGATGGGTTTACAGACATCACTATGAAAGCCATAATCCAAAAACAAGTTCAGAAGTACACATCCCATTAGGGGAAGCAAGATTGGTAATAAAAACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCATTTGGGCCAGGGAGTATCCATAGAATGGAGGAAAAGGAGATATAGCACACAAGTAGACCCTGGCCTGGCAGACCAACTAATTCACCTGTATTATTTTGATTGTTTTTCAGAATCTGCTATAAGGAATGCCATATTAGGACATAGAGTTAGTCCTAGGTGTGAATATCAGGCAGGACATAACAAGGTAGGATCCCTACAATACTTGGCATTAACAGCATTAATAACACCAAAAAGGAGAAAGCCACCTTTGCCCAGTGTTACAAAATTAACAGAGGACAGATGGAACAAGTCCCAGAGGACCAAGGGCCACAAAGGGAGCCATACAATGAATGGACATTAG -MK115065.1,vpr,4996,5290,5558,5850,forward,0.4807692307692313,MEQVPEDQGPQREPYNEWTLELLEELKSEAVRHFPRPWLHSLGQYIYETYGDTWAGVEAIIRTLQQLLFIHFRIGCQHSRIGIIRQRRARNGASRS,MEQVPEDQGPQREPYNEWTLELLEELKSEAVRHFPRPWLHSLGQYIYETYGDTWAGVEAIIRTLQQLLFIHFRIGCQHSRIGIIRQRRARNGASRS*L,ATGGAACAAGTCCCAGAGGACCAAGGGCCACAAAGGGAGCCATACAATGAATGGACATTAGAGCTCTTAGAAGAACTTAAGAGTGAAGCTGTTAGGCATTTTCCTAGACCATGGCTTCATAGCTTAGGACAATATATCTATGAAACTTATGGAGATACTTGGGCAGGGGTGGAAGCCATAATAAGAACCCTGCAACAACTGTTGTTCATTCATTTCAGAATTGGGTGTCAACATAGCAGGATAGGAATTATTCGACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGCTT -MK115065.1,tat_exon1,5267,5486,5830,6045,forward,0.5972222222222223,MEPVDPSLEPWKHPGSQPMTACNNCYCKRCCFHCQVCFTRKGLGISYGRKKRRQRRRASHSSQNHQAALPEQ,MEPVDPSLEPWKHPGSQPMTACNNCYCKRCCFHCQVCFTRKGLGISYGRKKRRQRRRASHSSQNHQAALPEQ*,ATGGAGCCAGTAGATCCTAGCTTAGAGCCCTGGAAACATCCAGGAAGTCAACCTATGACTGCTTGTAACAATTGCTATTGTAAACGGTGTTGCTTTCATTGCCAAGTTTGCTTCACAAGAAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTTCTCACAGCAGTCAGAATCATCAAGCGGCTCTACCAGAGCAGTAA -MK115065.1,rev_exon1,5406,5484,5969,6045,forward,0.6538461538461537,MAGRSGDSDEELLTAVRIIKRLYQSS,MAGRSGDSDEELLTAVRIIKRLYQSS,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTTCTCACAGCAGTCAGAATCATCAAGCGGCTCTACCAGAGCAGT -MK115065.1,vpu,5498,5744,6061,6310,forward,0.751219512195122,MHALEIAAIVGLVVAAIIAIVVWSIVLIEYRKILRQRKIDRLIDRIRERAEDSGNESDGDQEELSALVEMGHLVPWDGDDM,MHALEIAAIVGLVVAAIIAIVVWSIVLIEYRKILRQRKIDRLIDRIRERAEDSGNESDGDQEELSALVEMGHLVPWDGDDM*,ATGCATGCCTTAGAAATAGCAGCAATAGTAGGATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGTCTATAGTATTAATAGAATATAGGAAAATTTTAAGACAAAGGAAAATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAAAGTGACGGGGACCAGGAGGAGTTATCAGCACTTGTGGAGATGGGGCATCTTGTTCCTTGGGATGGTGATGATATGTAG -MK115065.1,env,5661,8262,6224,8795,forward,0.5663551401869167,MKVTGTRRSYQHLWRWGILFLGMVMICSANNLWVTVYYGVPVWKEATTTLFCASDAKAYETEKHNVWATHACVPTDPSPQEVALENVTETFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDNLNLNRPNNNTCSNNTNYNITEKGEIKNCSFNVTTGIRDRVTKEHALFYKLDVVPIDEGSGNTTGKYRMINCNTSVITQACPKVSFEPIPIHFCAPAGFAILKCKDKKFNGTGECRNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVIRSANLSNNAKTIIVQLNKSVKINCTRPNNNTRRSIHIGPGRAFYGTDIIGDIRQAHCNISGKDWNDTLKQIVIKLKEKFENKTIVFTQSSGGDPEIVMHSFNCGGEFFYCNTTQLFNSTWNNSTWNGTDNWNGTESNSTITLPCRIKQIINLWQEVGRAMYAPPIQGQIRCSSNITGLLLVRDGGSNNSSNDTETFRPGGGDMRDNWRSELYKYKVVKIEPLGIAPTHAKRRVVQREKRAIGLGAFFLGFLGAAGSTMGAASVTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLALERYLKDQQLLGIWGCSGKLICTTNVPWNISWSPRWNRSLDEIWTNMTWKQWEKEIDNYTDIIYNLIEQSQNQQEQNEQDLLALDKWASLWNWFDITQWLWYIKIFIMIVGGLIGLRIVFTILSIVNRVRQGYSPLSLQTLLPTQRGPDRPEGTEEGGGERDRGTSTRLVHGFLALIWDDLRSLFLFSYHRLRDLLLIAARIVELLGRRGWEALKYWWNLLQYWSQEIKNSAVSLLNTTAIAVAEGTDRIIEVLQRGFRAILHIPTRIRQGLERALL,MKVTGTRRSYQHLWRWGILFLGMVMICSANNLWVTVYYGVPVWKEATTTLFCASDAKAYETEKHNVWATHACVPTDPSPQEVALENVTETFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDNLNLNRPNNNTCSNNTNYNITEKGEIKNCSFNVTTGIRDRVTKEHALFYKLDVVPIDEGSGNTTGKYRMINCNTSVITQACPKVSFEPIPIHFCAPAGFAILKCKDKKFNGTGECRNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVIRSANLSNNAKTIIVQLNKSVKINCTRPNNNTRRSIHIGPGRAFYGTDIIGDIRQAHCNISGKDWNDTLKQIVIKLKEKFENKTIVFTQSSGGDPEIVMHSFNCGGEFFYCNTTQLFNSTWNNSTWNGTDNWNGTESNSTITLPCRIKQIINLWQEVGRAMYAPPIQGQIRCSSNITGLLLVRDGGSNNSSNDTETFRPGGGDMRDNWRSELYKYKVVKIEPLGIAPTHAKRRVVQREKRAIGLGAFFLGFLGAAGSTMGAASVTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLALERYLKDQQLLGIWGCSGKLICTTNVPWNISWSPRWNRSLDEIWTNMTWKQWEKEIDNYTDIIYNLIEQSQNQQEQNEQDLLALDKWASLWNWFDITQWLWYIKIFIMIVGGLIGLRIVFTILSIVNRVRQGYSPLSLQTLLPTQRGPDRPEGTEEGGGERDRGTSTRLVHGFLALIWDDLRSLFLFSYHRLRDLLLIAARIVELLGRRGWEALKYWWNLLQYWSQEIKNSAVSLLNTTAIAVAEGTDRIIEVLQRGFRAILHIPTRIRQGLERALL*,ATGAAAGTGACGGGGACCAGGAGGAGTTATCAGCACTTGTGGAGATGGGGCATCTTGTTCCTTGGGATGGTGATGATATGTAGTGCCAACAACTTGTGGGTCACAGTCTATTATGGGGTACCTGTATGGAAAGAAGCAACTACCACTCTATTTTGTGCATCAGATGCTAAAGCATATGAGACAGAGAAGCATAATGTTTGGGCAACCCATGCCTGTGTACCCACAGACCCCAGCCCACAGGAAGTAGCATTGGAAAATGTGACAGAAACATTTAACATGTGGAAAAATGACATGGTAGAGCAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGCCTAAAGCCATGTGTGAAACTAACCCCACTCTGTGTTACTTTAAATTGCACTGATAATTTAAATCTAAATCGCCCTAACAATAATACTTGTAGTAATAATACTAATTATAATATAACGGAAAAAGGAGAAATAAAAAACTGCTCTTTCAATGTCACCACAGGAATAAGAGATAGGGTGACAAAAGAACATGCACTTTTCTATAAACTTGATGTAGTACCAATAGATGAAGGTAGTGGAAATACTACGGGCAAATATAGGATGATAAATTGTAACACCTCAGTCATTACACAAGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTTTTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAAGATAAGAAATTCAATGGAACAGGAGAATGTAGAAATGTCAGCACAGTACAATGTACACATGGAATTAGGCCAGTAGTATCAACTCAACTGCTGCTGAACGGCAGTCTAGCAGAAGAAGAGATAGTAATTAGATCTGCCAATCTCTCGAACAATGCTAAAACCATAATAGTACAGCTGAATAAATCTGTAAAAATTAATTGTACAAGACCCAACAATAATACAAGAAGAAGTATACACATAGGACCAGGGAGGGCATTTTATGGAACAGACATAATAGGAGATATAAGACAAGCGCATTGTAACATTAGTGGGAAAGATTGGAATGACACTTTAAAACAGATAGTTATAAAATTAAAAGAAAAATTTGAGAATAAAACAATAGTCTTTACTCAATCCTCAGGAGGGGACCCAGAGATAGTGATGCATAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAATACAACACAGCTGTTTAATAGTACTTGGAATAATAGTACTTGGAATGGTACTGACAATTGGAATGGTACTGAATCAAATAGCACTATCACACTCCCATGCAGAATAAAACAAATTATAAACTTGTGGCAGGAAGTAGGAAGAGCAATGTATGCCCCTCCCATCCAAGGGCAAATTAGATGTTCATCAAATATTACAGGGCTGCTGCTAGTAAGAGATGGTGGGAGCAACAATAGTAGTAATGATACAGAGACCTTCAGGCCTGGAGGAGGAGATATGAGGGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTCAAAATTGAACCATTAGGAATAGCACCCACCCATGCAAAGAGAAGAGTGGTGCAAAGGGAAAAAAGAGCAATAGGACTTGGAGCTTTCTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAGCAGCAAAACAATTTGCTGAGAGCTATTGAGGCGCAACAGCATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTTTGGAAAGATACCTAAAGGATCAACAGCTCCTGGGGATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTAATGTGCCCTGGAATATTAGTTGGAGCCCTAGATGGAATAGATCTCTAGATGAGATTTGGACTAACATGACCTGGAAGCAGTGGGAAAAGGAAATTGACAATTACACAGACATAATATATAACCTAATTGAACAATCACAGAACCAACAAGAACAGAATGAACAAGACTTATTGGCATTAGATAAGTGGGCAAGTTTGTGGAATTGGTTTGACATTACACAGTGGCTATGGTATATAAAAATATTCATAATGATAGTAGGAGGCTTGATAGGTTTAAGAATAGTTTTTACTATACTGTCTATAGTGAATAGAGTTAGGCAGGGATACTCACCATTGTCATTGCAGACCCTCCTCCCAACCCAGAGGGGACCCGACAGGCCCGAAGGAACAGAAGAAGGAGGTGGAGAGAGAGACAGAGGCACATCCACGAGATTAGTGCATGGATTCTTAGCACTCATCTGGGACGACCTGCGGAGCCTGTTCCTCTTCAGTTACCACCGCTTGAGAGACTTACTCTTGATTGCGGCGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCACTGAAGTATTGGTGGAATCTCCTGCAGTATTGGAGTCAGGAAATAAAGAATAGTGCAGTTAGCTTGCTCAACACCACAGCAATAGCAGTAGCTGAGGGGACAGATAGGATTATAGAAGTATTACAAAGAGGCTTTAGAGCTATTCTCCACATACCTACACGAATAAGACAGGGCTTAGAAAGGGCTTTGCTATAA -MK115065.1,tat_exon2,7843,7936,8376,8469,forward,0.4866666666666659,RPSSQPRGDPTGPKEQKKEVERETEAHPRD,RPSSQPRGDPTGPKEQKKEVERETEAHPRD*,AGACCCTCCTCCCAACCCAGAGGGGACCCGACAGGCCCGAAGGAACAGAAGAAGGAGGTGGAGAGAGAGACAGAGGCACATCCACGAGATTAG -MK115065.1,rev_exon2,7844,8120,8377,8653,forward,0.4285714285714286,DPPPNPEGTRQARRNRRRRWRERQRHIHEISAWILSTHLGRPAEPVPLQLPPLERLTLDCGEDCGTSGTQGVGSTEVLVESPAVLESGNKE,DPPPNPEGTRQARRNRRRRWRERQRHIHEISAWILSTHLGRPAEPVPLQLPPLERLTLDCGEDCGTSGTQGVGSTEVLVESPAVLESGNKE*,GACCCTCCTCCCAACCCAGAGGGGACCCGACAGGCCCGAAGGAACAGAAGAAGGAGGTGGAGAGAGAGACAGAGGCACATCCACGAGATTAGTGCATGGATTCTTAGCACTCATCTGGGACGACCTGCGGAGCCTGTTCCTCTTCAGTTACCACCGCTTGAGAGACTTACTCTTGATTGCGGCGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCACTGAAGTATTGGTGGAATCTCCTGCAGTATTGGAGTCAGGAAATAAAGAATAG -MK115065.1,nef,8263,8911,8796,9417,forward,0.7471544715447078,MGNKLSRGLRAGWPTIRERMRRARPVREPEPAAAGVGAASRDLERHGALTSSNTAATNADVACLEAQQEEEEVGFPVRPQVPLRPMTYKGALDISHFLKEKGGLDGLIYSKRRQDILDLWLYNTQGYFPDWQNYTPGPGVRFPLCFGWCFKLVPVDPDKVEEASVGENNCLLSPENLHGMEDEHREVLQWRFDSRLAFHHVARELHPEYYKDC,MGNKLSRGLRAGWPTIRERMRRARPVREPEPAAAGVGAASRDLERHGALTSSNTAATNADVACLEAQQEEEEVGFPVRPQVPLRPMTYKGALDISHFLKEKGGLDGLIYSKRRQDILDLWLYNTQGYFPDWQNYTPGPGVRFPLCFGWCFKLVPVDPDKVEEASVGENNCLLSPENLHGMEDEHREVLQWRFDSRLAFHHVARELHPEYYKDC*H*,ATGGGTAACAAGTTGTCAAGAGGGCTCAGGGCTGGATGGCCTACCATAAGGGAGAGAATGAGACGAGCTAGGCCAGTAAGAGAGCCAGAGCCAGCAGCAGCTGGGGTGGGAGCAGCATCTCGAGACCTGGAAAGACATGGAGCACTTACAAGTAGCAATACAGCAGCTACCAATGCTGATGTTGCCTGCCTGGAAGCACAACAGGAGGAGGAAGAGGTGGGTTTTCCAGTCAGACCTCAGGTACCTTTAAGGCCAATGACTTACAAGGGAGCTCTAGATATTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGATGGGCTAATTTACTCCAAAAGAAGACAAGACATCCTTGATCTGTGGCTCTACAACACACAAGGCTACTTCCCTGACTGGCAGAACTACACACCAGGGCCAGGAGTCAGATTTCCACTGTGTTTTGGATGGTGCTTCAAGCTAGTACCAGTTGATCCAGATAAGGTAGAAGAGGCCAGTGTAGGAGAGAACAACTGCTTGTTAAGCCCCGAGAACCTGCATGGAATGGAGGACGAACACAGAGAAGTATTGCAGTGGAGGTTTGACAGCCGCCTAGCATTTCATCACGTGGCCCGAGAGCTGCATCCGGAGTATTACAAGGACTGCTGACACTGA -MK115464.1,gag,527,2297,789,2292,forward,1.495,MTETLLVQNANPDCKTILKALRPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSNIIMMQRGNFRNQRKTVKCFNCGKERHIARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLRKIWPSSKGRPRNFLQSRPEPTAPPEESFRFREETATPPQKQEPVDKEVYPLASLKSLFGNDPSSQ,MLQAIPGLRVGPAGSHPFALTSLSASCCHQSQSPGCSGATARTGT*KRK*NQRSSLDAGLGLLKRARQEARGGDW*VRQF*LAEARRREISARASVLSGGELDKWEKIRLRPGGKKRYKLKHIVWASRELERFAVNPGLLETTEGCKQILEQLQPSLPTGSEELRSLFNTVATLYCVHKRIEVQDTKEALEKIEEEQNKSKKKAQQAVADKGSTSQVSQNYPIVQNLQGQMVHQAISPRTLNA*VKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAE*DRVHPVHAGPVAPGQMREPRGSDIAGTTSTLQEQIA*MTSNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYKVLRAEQASQDVKN*MTETLLVQNANPDCKTILKALRPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSNIIMMQRGNFRNQRKTVKCFNCGKERHIARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLRKIWPSSKGRPRNFLQSRPEPTAPPEESFRFREETATPPQKQEPVDKEVYPLASLKSLFGNDPSSQ*,ATGCTTCAGGCCATCCCTGGTTTGAGGGTGGGTCCCGCCGGGTCCCACCCCTTTGCACTCACGAGCCTGTCTGCCTCCTGCTGCCATCAATCACAGAGCCCAGGCTGTTCGGGCGCCACTGCCCGAACAGGGACCTGAAAGCGAAAGTAGAACCAGAGGAGCTCTCTCGACGCAGGACTCGGCTTGCTGAAGCGCGCACGGCAAGAGGCGAGAGGCGGCGACTGGTGAGTACGCCAATTTTGACTAGCAGAGGCTAGAAGGAGAGAGATAAGTGCGAGAGCGTCTGTATTAAGCGGGGGAGAATTAGATAAATGGGAAAAAATTCGGTTAAGGCCAGGAGGAAAGAAAAGATATAAATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTTAACCCCGGCCTTTTAGAAACAACAGAAGGATGTAAACAAATACTGGAACAGCTGCAACCATCCCTTCCGACAGGATCAGAAGAACTTAGATCATTATTTAATACAGTAGCAACCCTCTATTGTGTGCATAAGAGAATAGAGGTACAAGACACCAAGGAAGCCTTAGAAAAGATAGAAGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAGGCAGTAGCTGACAAAGGAAGTACCAGCCAGGTCAGCCAAAATTACCCGATAGTGCAGAACCTCCAGGGGCAAATGGTACATCAGGCCATATCGCCTAGAACTTTAAATGCATAGGTGAAAGTAGTAGAAGAGAAGGCCTTTAGCCCAGAGGTAATACCCATGTTTTCAGCATTATCGGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATCAATGAGGAGGCTGCAGAATAAGATAGAGTGCATCCAGTGCATGCAGGGCCTGTTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATAGATGACAAGTAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCCTAGGATTAAATAAGATAGTAAGAATGTATAGCCCTACCAGCATTTTGGACATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAAAGTCCTAAGAGCCGAGCAAGCATCACAGGATGTAAAAAATTAGATGACAGAAACCTTATTAGTCCAAAATGCAAACCCAGATTGTAAGACTATTTTAAAAGCATTAAGACCAGCAGCAACACTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCCGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAACAAATTCAAATATCATAATGATGCAGAGAGGCAATTTTAGGAACCAAAGAAAGACTGTTAAGTGTTTCAATTGTGGCAAAGAAAGGCACATAGCCAGAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGATTGTACTGAGAGACAGGCTAATTTTTTAAGGAAGATCTGGCCTTCCTCCAAAGGAAGGCCAAGGAACTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTAGGGAGGAGACAGCAACTCCTCCTCAGAAGCAGGAGCCGGTGGACAAAGAAGTGTATCCTTTAGCTTCCCTCAAATCACTCTTTGGCAACGACCCCTCGTCACAATAA -MK115464.1,pol,2089,5101,2084,5096,forward,1.8783649052841465,AKIKQECGIPYNPQSQEVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDNRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIKDYGKQMAGDDCVASRQDED,FFKEDLAFLQRKAKELSSEQTRANSPTRRELQV*GGDSNSSSEAGAGGQRSVSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEISLPGR*KPKMIEGIGGFIKVRQYDQITIEICGHKAIGTVLVGPTPVNIIGRNLLTQISCTLNFPISPIETVPVQLKPGIDSPKVKQWPLTEEKIKALVEICTEMEKEKKISKIRPENPYNTPVFAIKKKDSTK*RKLVDFKELNKRTQDF*EVQLRIPHPARLKKKKSITVLDVGDAYFSIPLDKDFKKYTAFTIPSINNKTPEIRYQYNVLPQG*KRSPAIFQSSMIKILEPFRKQNPDIVIYQYIDDLYVRSDLEIRQHRTKIEELRQHLLK*RLTTPDKKHQKEPPFLWISYELHPDKWTVQPIVLPDKDSWTVNDIQKLVRKLN*ASQIYAEIKVRQLCKLLKGAKALTEVIQLTEEAELELAENKEILKEPVHEVYYDPSKDLIAELQKQRQGQWTYQIYQEPFKNLKTGKYARTRGTHTNDVKQLTEAVQKITTESIVI*GKTPRFKLPIQKET*DT*WTEYWQAT*IPE*EFVNTPPLVKL*YQLEKEPIVGAETFYVDRAANKETKLRKAGYVTSRGRQKVVSLTDTTNQKTELQAICLALQDSGLEVNIVTDSQYALRIIQAQPDKSESEIVNQIIEQLIKKEKVYLA*VPAHKRIRRNEQVDKLVSARIRKVLFLDRIDKAQEEHKKYHNN*RAMASDFNLPPVVAKKIVASCDKCQLKKEATHRQVDCSPRIWQLDCTHLEGKVILVAVHVASRYIEAEVIPAETGQETAYFLLKLAGR*PVKAIHTDNGTNFTSATVKAAC**AKIKQECGIPYNPQSQEVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDNRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIKDYGKQMAGDDCVASRQDED*,TTTTTTAAGGAAGATCTGGCCTTCCTCCAAAGGAAGGCCAAGGAACTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTAGGGAGGAGACAGCAACTCCTCCTCAGAAGCAGGAGCCGGTGGACAAAGAAGTGTATCCTTTAGCTTCCCTCAAATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAGGAGGGCAGCTAAAGGAAGCTCTATTAGATACAGGAGCAGATGACACAGTATTAGAAGAAATAAGTTTGCCAGGAAGATAGAAACCAAAAATGATAGAAGGAATTGGAGGCTTTATCAAAGTAAGACAGTATGATCAGATAACTATAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGCAGAAATTTGTTGACTCAGATTAGTTGTACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTACAATTAAAACCAGGAATAGATAGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAAGAAAAAAAGATTTCAAAAATTAGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGAAGAAAATTAGTAGATTTCAAGGAACTTAATAAAAGAACTCAAGACTTCTAAGAAGTTCAATTAAGAATACCACACCCCGCAAGGTTAAAAAAGAAGAAATCAATAACAGTACTAGATGTAGGTGATGCATATTTTTCAATTCCCTTAGATAAAGACTTCAAGAAGTATACTGCATTTACCATACCTAGTATAAATAATAAGACACCAGAGATTAGATATCAGTACAATGTGCTTCCACAGGGATAGAAAAGATCACCAGCAATATTCCAAAGTAGCATGATAAAAATCTTAGAGCCTTTTAGAAAGCAAAATCCAGACATAGTTATCTATCAATACATAGATGACTTGTATGTAAGATCTGACTTAGAAATAAGGCAGCATAGAACAAAAATAGAGGAACTGAGACAACACTTGTTGAAGTAGAGATTGACCACACCAGATAAAAAACATCAGAAAGAACCCCCATTCCTGTGGATAAGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAGACAAAGATAGCTGGACTGTCAATGACATACAGAAGCTAGTAAGAAAATTGAATTGAGCAAGTCAGATTTATGCAGAGATTAAAGTGAGACAATTATGTAAACTCCTTAAAGGAGCCAAAGCGCTAACAGAAGTGATACAACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAAAGAAATTCTAAAAGAACCAGTACATGAAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAGTTACAGAAGCAGAGGCAAGGCCAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAGTATGCAAGAACGAGAGGTACCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTGATATGAGGAAAGACCCCTAGATTTAAACTACCCATACAGAAAGAAACATAAGATACCTAGTGGACAGAATATTGGCAAGCCACCTAGATTCCCGAGTAAGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATAGTACCAATTAGAAAAAGAGCCTATTGTAGGAGCAGAAACTTTCTATGTAGATAGGGCAGCTAATAAAGAGACTAAATTAAGAAAAGCAGGATATGTTACTAGCAGAGGAAGACAAAAGGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAACTGCAAGCAATTTGTCTAGCATTGCAGGATTCAGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCACTAAGAATAATTCAAGCACAACCAGATAAGAGTGAATCAGAGATAGTCAATCAAATAATAGAGCAGTTAATAAAAAAGGAAAAGGTCTACCTTGCATAGGTACCAGCACACAAAAGAATTAGAAGAAATGAACAAGTAGATAAATTAGTCAGTGCTAGAATCAGGAAAGTCCTATTTTTAGATAGAATAGATAAGGCCCAAGAAGAGCATAAGAAATATCACAATAATTAAAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTAGTAGCAAAAAAAATAGTAGCCAGTTGTGATAAATGCCAGCTAAAAAAAGAAGCCACGCATAGACAAGTAGACTGTAGTCCAAGAATATGGCAATTAGATTGTACACATTTAGAAGGAAAAGTTATCCTAGTAGCAGTTCATGTAGCCAGTAGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAAGAAACAGCATACTTCCTCTTAAAATTAGCAGGAAGGTAGCCAGTGAAAGCAATACATACAGACAATGGAACCAATTTCACCAGTGCTACGGTTAAGGCCGCCTGTTAGTAGGCAAAGATCAAGCAGGAATGTGGCATTCCCTACAATCCCCAAAGTCAAGAAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAAGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTCCAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACAGACCTACAAACTAAAGAATTACAGAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAACAGAGATCCACTTTGGAAAGGACCAGCAAAACTTCTTTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGACATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATCATTAAGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG -MK115464.1,vif,5045,5624,5040,5619,forward,1.494270833333335,MENRWQVMIVWQVDRMRISTWKSLVKHHMYISKKAQGWFYRHHYENPHPRISSEVHIPLGDARLVITTY,MENRWQVMIVWQVDRMRISTWKSLVKHHMYISKKAQGWFYRHHYENPHPRISSEVHIPLGDARLVITTY*GLHTGERDWHLGQGVSIEWKERKYSTQVTPDLADQLIHLYYFDCFAESAIREAILGHRVSPRCEYQAGHNKVGSLQYLALTALVTPKKTKPPLPSVTKLTEDRWNKPQKTKGHRRSQTMNGH*,ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGCACATGGAAAAGTTTAGTAAAACACCATATGTACATTTCAAAGAAAGCCCAAGGATGGTTTTATAGACATCACTATGAAAATCCTCATCCAAGAATAAGTTCAGAAGTACACATCCCGCTAGGGGATGCTAGATTGGTAATAACAACATATTAGGGTCTGCATACAGGAGAAAGAGACTGGCATTTAGGTCAAGGAGTCTCCATAGAATGGAAGGAAAGGAAATATAGCACACAAGTAACCCCTGACCTAGCAGACCAACTAATTCACCTGTATTATTTTGATTGTTTTGCAGAATCTGCTATAAGAGAGGCCATATTAGGACATAGAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGATCTCTACAGTACTTGGCACTAACAGCATTAGTAACACCAAAAAAGACAAAGCCACCTTTGCCTAGTGTGACAAAACTGACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAAGGAGCCAAACAATGAATGGACACTAG -MK115464.1,vpr,5563,5857,5558,5850,forward,0.5192307692307698,MEQAPEDQGPQKEPNNEWTLELLEELKREAVRHFPRTWLHGLGQHIYETYEDTWTGVGALIRILQQLLFIHFRIRCQHSRIGITRQRRARNRASRS,MEQAPEDQGPQKEPNNEWTLELLEELKREAVRHFPRTWLHGLGQHIYETYEDTWTGVGALIRILQQLLFIHFRIRCQHSRIGITRQRRARNRASRS*I,ATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAAGGAGCCAAACAATGAATGGACACTAGAGCTCTTAGAAGAGCTTAAGAGAGAAGCTGTTAGACATTTTCCTAGGACATGGCTTCATGGCTTAGGACAACATATCTATGAAACTTATGAGGATACTTGGACAGGAGTAGGAGCCTTAATAAGAATTCTGCAACAACTGCTGTTTATTCATTTCAGAATTAGGTGCCAACATAGCAGAATAGGCATCACTCGACAGAGGAGAGCAAGAAATAGAGCCAGTAGATCCTAGATT -MK115464.1,tat_exon1,5711,6053,5830,6045,forward,2.118055555555556,MRILGQE,MRILGQE*EP**EFCNNCCLFISELGANIAE*ASLDRGEQEIEPVDPRLEPWKHPGSQPKTPCTKCYCKKCCFHCQVCFTTKGLGISYGRKKRRQRRRPPQDSQTHQVPLPKQ*,ATGAGGATACTTGGACAGGAGTAGGAGCCTTAATAAGAATTCTGCAACAACTGCTGTTTATTCATTTCAGAATTAGGTGCCAACATAGCAGAATAGGCATCACTCGACAGAGGAGAGCAAGAAATAGAGCCAGTAGATCCTAGATTAGAGCCCTGGAAGCATCCAGGAAGTCAGCCTAAGACTCCTTGTACCAAATGCTATTGTAAAAAATGCTGCTTTCATTGCCAAGTTTGTTTCACAACAAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGACCTCCTCAAGACAGTCAGACTCATCAAGTACCTCTACCAAAGCAGTGA -MK115464.1,rev_exon1,5973,6051,5969,6045,forward,0.5769230769230769,MAGRSGDSDEDLLKTVRLIKYLYQSS,MAGRSGDSDEDLLKTVRLIKYLYQSS,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGACCTCCTCAAGACAGTCAGACTCATCAAGTACCTCTACCAAAGCAGT -MK115464.1,vpu,6065,6347,6061,6310,forward,1.3170731707317076,AIVLIEYKKILKQRRIDRLIDRIIDKAEDSGNESEGDQEELSAFVEIGHHAP,MQSLYILTIVALVVAAILAIVV*AIVLIEYKKILKQRRIDRLIDRIIDKAEDSGNESEGDQEELSAFVEIGHHAP*NVDDL*YCRPVVGHSLL*,ATGCAATCTTTATATATATTAACAATAGTAGCATTAGTAGTAGCAGCAATATTAGCAATAGTTGTGTAGGCCATAGTACTCATAGAATATAAGAAAATATTAAAACAAAGGAGAATAGATAGGTTAATTGATAGAATAATAGATAAGGCAGAAGACAGTGGCAATGAGAGTGAAGGAGATCAAGAGGAGTTATCAGCATTTGTAGAGATAGGGCATCATGCTCCTTAGAATGTTGATGATCTATAGTACTGCAGACCAGTGGTGGGTCACAGTCTATTATAA -MK115464.1,env,6228,8826,6224,8795,forward,1.8288551401869095,MTNCTFNITTSIKDKIKKEAALFYKIDLVEIDEKKNNSSTRYRLINCNTSAITQACPKVSFKPIPIHFCAPASFAILKCNNKKFSGKGPCTNVSTVQCTHRIKPVVSTQLLLNGSLAEEEVMIRSDNITDNTKNIIVQLKEAIRIFCIRPNNNTRKSINIRPGRAFYTTGDIIRDIRQAHCNISGNWSNTLKQIATQLGKQLNQTQQIIFNSSAGKDPEIVTHSFNCGKKFFYCNSSSLFNST,MRVKEIKRSYQHL*R*GIMLLRMLMIYSTADQWWVTVYYKVPVWREANTTLFCASDAKAYSTEAHNV*ATHACVPTDPNPQEIVIENVTEDFNMWKNNMVDQMHEDIISL*DQSLKPCVKLTPLCVTLNCTDIRNSTVTSNTTSNTT*GEMTNCTFNITTSIKDKIKKEAALFYKIDLVEIDEKKNNSSTRYRLINCNTSAITQACPKVSFKPIPIHFCAPASFAILKCNNKKFSGKGPCTNVSTVQCTHRIKPVVSTQLLLNGSLAEEEVMIRSDNITDNTKNIIVQLKEAIRIFCIRPNNNTRKSINIRPGRAFYTTGDIIRDIRQAHCNISGNWSNTLKQIATQLGKQLNQTQQIIFNSSAGKDPEIVTHSFNCGKKFFYCNSSSLFNST*TKNGTDSWQSNDTQNSNITLQCRIKQIINLWQEVRKAMYAPPISRQINCTSNITGLVLTRDRRNETKTFRPGRENMKDNWRSKLYKYKVVRIEPLRIAPTKAKRRVVQREKRAVRLGAMFLKFLGAARSTIGAASIALTEQARRVLSGIVQQQNNLLRAIEAQQHLLQLTV*GIKQLQARVLAVERYLQDQQLLGL*GCSRKLICTTTVP*NRS*GRHNKNYKSLDDI*DNMT*IE*EKEIDNYTSLIYTLITESHSQQKKNEQELLALDK*ASL*N*FDISQWLWYIKIFIMIVGGLVSLRIVFAVLSIVNKVRQGYSPLSFQTLLPAPRGADRPERIEERGRERDKGRSGRLVNGFLALI*DDLRSLCLFSYHRLSDLLLIVIKIVELLRRKR*EALKY**NLLQY*SQELKNSAVSLLNTTAIVVAERTDKIIEILQRISRAFLHIPRRIRQGLEKALL*DRWQVVKK*,ATGAGAGTGAAGGAGATCAAGAGGAGTTATCAGCATTTGTAGAGATAGGGCATCATGCTCCTTAGAATGTTGATGATCTATAGTACTGCAGACCAGTGGTGGGTCACAGTCTATTATAAGGTACCTGTGTGGAGAGAAGCAAACACCACTCTATTTTGTGCATCAGATGCTAAAGCATATAGTACAGAGGCACATAATGTTTAGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAATAGTAATAGAAAATGTAACAGAAGATTTTAACATGTGGAAGAATAACATGGTAGATCAGATGCATGAGGATATAATCAGTTTATAGGATCAAAGTCTAAAGCCATGTGTGAAACTAACCCCACTCTGTGTTACTTTAAATTGTACTGATATTAGGAATAGTACCGTTACTTCTAATACTACTTCTAATACTACTTAGGGAGAAATGACAAACTGCACTTTCAATATCACCACAAGCATAAAGGATAAGATAAAAAAAGAAGCGGCACTTTTTTATAAAATTGATTTAGTAGAAATAGATGAAAAGAAAAATAACAGTAGTACCAGATATAGGTTGATAAATTGTAACACCTCAGCCATTACACAAGCCTGCCCAAAGGTATCCTTTAAGCCAATTCCCATACATTTTTGTGCCCCGGCTAGTTTTGCAATTCTAAAGTGTAATAATAAGAAGTTCAGTGGAAAAGGACCATGTACAAATGTCAGCACAGTGCAATGTACACATAGAATTAAGCCAGTAGTATCAACTCAACTGCTGTTAAATGGCAGTCTAGCAGAAGAAGAGGTAATGATTAGATCTGACAATATCACAGACAATACTAAAAACATAATAGTACAGTTGAAAGAAGCCATACGAATTTTCTGTATAAGACCCAACAACAATACAAGAAAAAGTATAAATATAAGACCAGGAAGAGCATTTTATACAACAGGAGATATAATAAGAGACATAAGGCAAGCACATTGTAACATTAGTGGAAATTGGAGTAACACTTTAAAACAGATAGCTACACAATTAGGAAAACAACTGAATCAAACACAACAAATAATCTTTAATTCATCCGCAGGAAAGGACCCAGAGATTGTAACACACAGTTTTAATTGTGGAAAGAAATTCTTCTATTGTAATTCATCATCACTGTTTAATAGTACCTAGACTAAAAATGGTACTGATAGTTGGCAGTCTAATGATACTCAGAATAGTAATATCACACTCCAATGCAGAATAAAACAAATTATAAACCTGTGGCAGGAAGTAAGAAAAGCAATGTATGCCCCTCCCATCAGTAGACAAATTAACTGTACATCAAATATTACAGGGCTAGTTTTAACAAGAGATAGGAGGAATGAAACTAAGACCTTTAGACCTGGAAGAGAAAATATGAAGGATAATTGGAGAAGTAAATTATATAAATATAAAGTAGTAAGAATTGAACCATTAAGAATAGCACCCACCAAGGCAAAAAGAAGAGTGGTGCAGAGAGAGAAAAGAGCAGTAAGACTAGGAGCTATGTTCCTTAAGTTCTTAGGAGCAGCCAGAAGCACTATAGGCGCAGCGTCGATAGCGCTGACGGAACAGGCCAGACGAGTCTTGTCTGGTATAGTGCAACAGCAGAACAATTTGCTGAGAGCTATTGAGGCGCAACAGCATTTGTTGCAACTCACAGTCTAAGGCATTAAGCAGCTCCAGGCAAGAGTCCTGGCTGTAGAAAGATACCTACAGGATCAACAGCTCCTAGGACTTTGAGGTTGCTCTAGAAAACTCATTTGCACCACTACTGTGCCTTAGAATCGTAGTTGAGGTAGGCATAACAAAAATTACAAAAGTCTAGATGACATTTAGGATAACATGACCTAGATAGAGTAGGAAAAAGAAATTGACAATTACACAAGCTTAATATACACCTTAATTACAGAATCACATTCCCAACAAAAAAAGAATGAACAAGAATTATTGGCATTAGATAAATAGGCAAGTTTGTAGAATTAGTTTGACATATCACAATGGCTGTGGTATATAAAAATATTCATAATGATAGTAGGAGGCTTAGTAAGTTTAAGAATAGTTTTTGCTGTACTTTCTATAGTGAATAAAGTTAGGCAAGGATACTCACCATTATCATTTCAGACCCTCCTCCCAGCCCCGAGAGGAGCCGACAGGCCCGAAAGAATAGAAGAAAGAGGTAGAGAGAGAGACAAAGGCAGATCCGGTCGATTAGTGAACGGATTCTTAGCACTTATCTAGGACGATCTACGGAGCCTATGCCTCTTCAGCTACCACCGCTTGAGCGACTTACTCTTGATTGTGATCAAGATTGTGGAACTTCTAAGACGCAAGAGGTAAGAAGCCCTCAAATATTAGTAGAATCTCCTGCAGTACTAGAGTCAGGAACTAAAGAATAGTGCTGTCAGCTTGCTCAACACCACAGCTATAGTAGTAGCTGAAAGGACAGATAAGATAATAGAAATATTACAAAGAATTAGTAGAGCTTTTCTCCACATACCTAGGAGAATAAGACAGGGCTTAGAAAAGGCTTTGCTATAAGATAGGTGGCAAGTGGTCAAAAAGTAG -MK115464.1,tat_exon2,8380,8476,8376,8469,forward,0.6000000000000001,RPSSQPREEPTGPKE,RPSSQPREEPTGPKE*KKEVERETKADPVD**,AGACCCTCCTCCCAGCCCCGAGAGGAGCCGACAGGCCCGAAAGAATAGAAGAAAGAGGTAGAGAGAGAGACAAAGGCAGATCCGGTCGATTAGTGA -MK115464.1,rev_exon2,8381,8657,8377,8653,forward,0.8274725274725274,RERQRQIRSISERILSTYLGRSTEPMPLQLPPLERLTLDCDQDCGTSKTQEVRSPQILVESPAVLESGTKE,DPPPSPERSRQARKNRRKR*RERQRQIRSISERILSTYLGRSTEPMPLQLPPLERLTLDCDQDCGTSKTQEVRSPQILVESPAVLESGTKE*,GACCCTCCTCCCAGCCCCGAGAGGAGCCGACAGGCCCGAAAGAATAGAAGAAAGAGGTAGAGAGAGAGACAAAGGCAGATCCGGTCGATTAGTGAACGGATTCTTAGCACTTATCTAGGACGATCTACGGAGCCTATGCCTCTTCAGCTACCACCGCTTGAGCGACTTACTCTTGATTGTGATCAAGATTGTGGAACTTCTAAGACGCAAGAGGTAAGAAGCCCTCAAATATTAGTAGAATCTCCTGCAGTACTAGAGTCAGGAACTAAAGAATAG -MK115464.1,nef,9064,9496,8796,9417,forward,1.64878048780488,MTYKAALDLSHFLKEKGGLEGLVYSQKRQDILDLWIYHTQGYFPDWQNYTPGPRIRYPLTFGWCFKLVPLEPDQVEEANEGENNSLLHPLSQHRMDDPEKEVLVWRFDSRLAFHHMAREKHPEFYKDC,MTYKAALDLSHFLKEKGGLEGLVYSQKRQDILDLWIYHTQGYFPDWQNYTPGPRIRYPLTFGWCFKLVPLEPDQVEEANEGENNSLLHPLSQHRMDDPEKEVLVWRFDSRLAFHHMAREKHPEFYKDC*HRAFHQGLSRRGVA*,ATGACTTATAAAGCAGCTCTAGATCTGAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAGTTTACTCCCAAAAAAGGCAAGATATCCTTGATCTGTGGATCTACCACACACAAGGCTATTTCCCTGATTGGCAGAACTACACACCAGGGCCAAGGATCAGATATCCCCTGACCTTTGGATGGTGCTTCAAGCTAGTACCACTTGAGCCAGATCAGGTAGAAGAGGCCAATGAAGGAGAGAACAACAGCCTGTTACACCCTCTGAGCCAGCATAGGATGGATGACCCGGAGAAAGAAGTGCTAGTGTGGAGATTTGACAGCCGCCTCGCATTTCATCACATGGCCCGAGAGAAGCATCCGGAGTTCTACAAAGACTGCTGACATAGAGCTTTCCACCAGGGACTTTCCAGAAGAGGCGTGGCCTAG -MK115530.1,gag,746,2252,789,2292,forward,0.2571999999999999,MGARASILSGGKLDSWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSVNVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE,MGARASILSGGKLDSWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSVNVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE*R*,ATGGGTGCGAGAGCGTCAATATTAAGCGGGGGAAAATTAGATTCATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATTTAGTATGGGCAAGCAGGGAGCTAGAACGATTTGCCGTTAACCCTGGCCTGTTAGAAACATCAGAGGGATGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATTTAATGCAGTAGCAGTCCTCTATTGTGTACATCAAAGGATACAGGTACAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGTAGCAGCAGCTGACACTGACACAGGAAACAGCAGCCAAAATTACCCCATAGTGCAGAACCTCCAGGGGCAAATGGTACATCAGCCCCTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAAAAGGCCTTCAGCCCAGAAGTCATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGTCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCTTGGGATTAAATAAAATAGTAAGGATGTATAGCCCTACCAGTATTCTGGATATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAGAACTTTAAGAGCTGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATTCGAATCCAGATTGTAAGACTATTTTAAAAGCATTAGGACCAGCAGCAACACTAGAGGAAATGATGACAGCATGTCAAGGAGTGGGGGGACCAGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAAATTCAGTTAATGTAATGATGCAAAGAGGCAATTTTAGAAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACATCAAATGAAAGACTGTACAGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAG -MK115530.1,pol,2038,5050,2084,5096,forward,0.14755732801595212,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVHQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVHQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAGGGGGGCAATTTAAAGAAGCTTTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACCCATAGAAATCTGTGGACACAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGCTTGGTTGTACCTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTCAATAAGAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAATTCCCTTAGATAAAGAATTCAGGAAGTATACTGCATTTACCATACCTAGTACAAATAATGAGACACCAGGGATTAGGTATGAGTACAATGTGCTGCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGCAAAATCCAGATATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAACTGAGACAACATCTGTTAAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAGTGGACAGTACAGCCTATAATACTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTACGCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAGGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTTTAAGAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGCAATGGACAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTACAAAAGATAGCCACAGAAAGCATAGTAATATGGGGAAAAACTCCTAAATTTAGACTACCTATACAAAAAGAAACGTGGGAGACATGGTGGGCAGAGTACTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAATTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACTAAATTAGGCAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAGGTTATCTCCCTAACGGACACAACAAATCAAAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATCAGAAGTAAACATAGTAACAGACTCACAATATACATTAGGAATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCCATCAGATAATAGAGCAGTTAATAAAAAAGGAAAAAGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGACAAACTAGTCAGTGCTGGAGTCAGGAGAGTACTATTTCTAGATGGAATAGATAAGGCCCAAGAAGACCATGAGAAATATCACAGTAATTGGAGAGCAATGGCTGGTGATTTTAATATACCCCCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCAAAAAGGAGAGGCCATGCATGGACAAGTAGATTGTAGTCCAGGAATATGGCAACTAGATTGTACACATCTAGAAGGGAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTCTCCTGAAACTAGCAGGGAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTAATGTGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCCATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTATAGTGCAGGGGAAAGAATAGTAGATATAATAGCAACAGACCTACAAACTAAAGAATTACAGAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGGAGAAAAGCAAAAATCATTAGGGATTATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG -MK115530.1,vif,4994,5573,5040,5619,forward,0.36979166666666674,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPDLADQLIHLYYFDCFSESAIRNAILGHIVNPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPDLADQLIHLYYFDCFSESAIRNAILGHIVNPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH*,ATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATGTTTCAAAGAAAACTAAAGGATGGTTTTATAGACATCACTATGAAAGCACACATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTGGTAGTAACAACATATTGGGGCCTGAATACAGGAGAAAGAGAATGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGAAAAAGGAAATATAGCACACAAGTTGACCCTGACCTAGCAGACCAACTAATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACATATAGTTAATCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGCTCTCTACAATACTTGGCACTAAAAGCATTAACAACACCAAAGAGAAGAAAGCCACCTTTACCTAGTGTTAGGAAACTGACAGAGGATAGATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAG -MK115530.1,vpr,5512,5806,5558,5850,forward,0.4038461538461544,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS*T,ATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAGAGCTTTTAGAGGAACTTAAGAATGAAGCGGTTAGACATTTTCCTAGGCCGTGGCTCCATGGCTTAGGACAACATATCTATGAAACTTATGGGGACACTTGGACAGGAGTGGAGGCCATAATAAGAACCCTGCAACAACTGCTGTTTATTCATTTCAGACTTGGGTGTCGACATAGCAGAATAGGCATTGTGCCACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACT -MK115530.1,tat_exon1,5783,6002,5830,6045,forward,0.29166666666666674,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ*,ATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCACCCAGGAAGTCAGCCTAAAACTCCTTGTACTAACTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAAAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGTAA -MK115530.1,rev_exon1,5922,6000,5969,6045,forward,0.5769230769230769,MAGRSGDSDEELLKAVRLIKILYQSS,MAGRSGDSDEELLKAVRLIKILYQSS,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGT -MK115530.1,vpu,6014,6260,6061,6310,forward,0.6500000000000001,MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAEDSGNESEGDQEELSALMEMGHHAPGDVDDL,MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAEDSGNESEGDQEELSALMEMGHHAPGDVDDL*,ATGCAACCTCTGCACATAGCAGCAATAGTAGGATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGACCATAGTGTTAATAGAATATAGGAAAATATTAAGACAAAAAAGGATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAG -MK115530.1,env,6177,8718,6224,8795,forward,0.4941588785046729,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTESHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSKEGKMAEEMRNCSFNITTEIRNKMQKEYALFYKLDVVPIDDDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYGNKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSGTETFRPGGGDMKDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTESHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSKEGKMAEEMRNCSFNITTEIRNKMQKEYALFYKLDVVPIDDDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYGNKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSGTETFRPGGGDMKDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL*,ATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTGACAGTCTATTATGGGGTACCTGTATGGAAAGAAGCAAACACCACTCTATTTTGTGCATCGGATGCTAAAGCATATACCACAGAGTCACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGGATTGGAAAATGTGACAGAAAATTTTAATATGTGGAAAAATAACATGGTAGAACAGATGCATGAGGATGTAATCAATTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCACTAATCTGAATGTTACTAATACCAATAGCAGTAGTAAGGAGGGAAAGATGGCGGAAGAAATGAGAAACTGCTCTTTCAATATCACCACAGAAATAAGAAATAAGATGCAGAAGGAATATGCACTTTTTTATAAACTTGATGTAGTACCAATAGATGATGATAATACAAGTTATACATTGATAAATTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCTATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAGGATAAGAAGTTCAATGGATCAGGACCATGTAAAAGTGTCAGCACAGTACAATGTACACATGGAATTAAGCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTTTAGCAGAAGAAGAGGTAGTAATTAGATCTGAAAATTTCACGAACAATGCTAAAACCATAATAGTACATCTGAAGGAACCTATACAAATTAATTGTACAAGACCCAACAACAATACAATGAAAAGTATCCCTCTAGGACCAGGAAGAGCATTCTATGCAACAGGAGCCATAATAGGAGATATAAGACAAGCACATTGTAACCTTAGTAGAAAAGCATGGAATAATACTTTAAAACAGGTAGTTGAAAAATTAAAAGAACAATATGGGAATAAAACAATAATCTTTAATCACTCCTCAGGAGGGGACCCAGAAATTATAATGCATACTTTTAATTGTGGAGGGGAATTTTTCTATTGTAATACAACACAGCTGTTTAATAGTACTTGGAATAGTACTTGGACTGGGAATGCTACCGAATTAGATGGAAACATCACACTCCCATGCAGAATAAAACAGATTATAAACAGGTGGCAAGAAGTAGGAAAAGCAATGTATGCCCCTCCCATTAGAGGAAAAATTAGATGTTCATCAAATATTACAGGGTTACTATTAGTAAGAGATGGTGGTAACACGAGCGGGACTGAGACCTTCAGACCTGGAGGAGGAGATATGAAGGACAATTGGAGGAGTGAATTATATAAATATAAAGTAGTAAAAATTGAGCCATTAGGAGTAGCACCCACCAGGGCAAAGAGAAGAGTGGTGCAAAGAGAAAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAAGCCAGGCTGTTATTGTCTGGTATAGTGCAACAGCAAAACAATTTGCTGAGAGCTATTGAGGCGCAACAACATCTATTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTACAGGATCAACAGCGCCTGGGAATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCCTGGAATGCTAGTTGGAGTAATAAATCTCTGAATCAGATTTGGGATAACATGACCTGGATGGAGTGGGAAAGAGAAATTAACAATTACACAGACACAATATACACCTTAATTGAAAAGGCGCAGAACCAGCAGGAAAAGAATGAACAAGAATTATTGGAATTGGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAAATGGCTGTGGTACATAAAATTATTCATAATGATAGTAGGAGGATTGATAGGTTTAAGAATAGTTTTTGCTGTACTTGCTATAGTAAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGTCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAGCTTATTCAATGTCACAGCCATCGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAAGAGCTTGTAGAGCTCTTCTCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCATTGTTATAA -MK115530.1,tat_exon2,8299,8395,8376,8469,forward,0.28666666666666596,RPTSQPRGDPTGPKESKKKVEKETETDQFD,RPTSQPRGDPTGPKESKKKVEKETETDQFD**,AGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGA -MK115530.1,rev_exon2,8300,8585,8377,8653,forward,0.4285714285714286,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVSLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVSLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE*CY*,GACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGTCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAG -MK115530.1,nef,8719,9340,8796,9417,forward,0.5918699186991796,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTYKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPTSLHGVEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTYKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPTSLHGVEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC*H*,ATGGGGGGCAAGTGGTCAAAAAGTAGTGGGGGTGGATGGCCTGCTGTAAGGGAAAGAATGAGACGAACTGAGCCAGCAGCAGAAGGGGTGGGAGCAGTATCTCGAGACCTGGAAAGACATGGAGCAGTCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGCGCCTGGCTGGAAGCACAAGAAGAGGACAGTGAAGTGGGTTTTCCAGTCAGACCTCAGGTGCCTTTAAGACCAATGACTTACAAAGGAGCTCTCGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCCCAAAAAAGACAAGATATCCTTGACCTGTGGGTCTACAACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGACCAGATATCCACTGACCTTTGGGTGGTGTTTCAAGCTAGTACCAGTGGAGCCAGAAGAGGCCAATCAAGGAGAGAACAACTGCTTGTTACACCCTACGAGCCTGCATGGGGTGGAGGACCCGGAAAAAGAAGTATTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCACATGGCCCGAGAGAAGCATCCGGAGTACTACAAAGACTGCTGACATTGA -MK115520.1,gag,695,2195,789,2292,forward,0.2571999999999999,MGARASILSGGKLDSWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSVNVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE,MGARASILSGGKLDSWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSVNVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE*,ATGGGTGCGAGAGCGTCAATATTAAGCGGGGGAAAATTAGATTCATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATTTAGTATGGGCAAGCAGGGAGCTAGAACGATTTGCCGTTAACCCTGGCCTGTTAGAAACATCAGAGGGATGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATTTAATGCAGTAGCAGTCCTCTATTGTGTACATCAAAGGATACAGGTACAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGTAGCAGCAGCTGACACTGACACAGGAAACAGCAGCCAAAATTACCCCATAGTGCAGAACCTCCAGGGGCAAATGGTACATCAGCCCCTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAAAAGGCCTTCAGCCCAGAAGTCATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCTTGGGATTAAATAAAATAGTAAGGATGTATAGCCCTACCAGTATTCTGGATATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAGAACTTTAAGAGCTGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATTCGAATCCAGATTGTAAGACTATTTTAAAAGCATTAGGACCAGCAGCAACACTAGAGGAAATGATGACAGCATGTCAAGGAGTGGGGGGACCAGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAAATTCAGTTAATGTAATGATGCAAAGAGGCAATTTTAGAAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACATCAAATGAAAGACTGTACAGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAA -MK115520.1,pol,1987,4915,2084,5096,forward,1.3952143569292395,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEAFLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDMGNGQYSL,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEAFLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDMGNGQYSL*YCQKKTAGLSMTYRS*WEN*IGQVRFTQGLK*GNYVNSLGEPKH*QR*YH*QKKQS*NWQKTGKF*ENQYMECIMTHQKT**QKYRSRAMDSGHIKFIKSHLKI*KQENMQE*GVPTLMM*NN*QRQYKR*PQKA**YGEKLLNLDYLYKKKHGRHGGQSTGKPPGFLSGSLSIPLP**NYGTN*RKNP**EQKLSM*MGQLIEKLN*AKQDMSLTEEDKRLSP*RTQQIKRLSYKQFI*LCRIRDQK*T**QTHNIH*ESFKHNQIRVNQS*SIR**SS**KRKKSTWHGYQHTKELEEMNK*TN*SVLESGEYYF*ME*IRPKKTMRNITVIGEQWLVILIYPL**QKK**PAVINVSKKERPCMDK*IVVQEYGN*IVHI*KGKLSW*QFM*PVDI*KQKLFQQRQGRKQHTFS*N*QGDGQ*KQYIQTMAAISPVMWLRPPVGGQGSSRNLAFPTIPKVKE**NP*IKN*RKL*DR*EIRLNILRQQYKWQYSSTILKEKGGLGGIVQGKE**I**QQTYKLKNYRNKLQKFKIFGFITGTAEIHFGKDQQSFSGKVKGQ**YKIIVI*K*,TTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAAATAGGGGGGCAATTTAAAGAAGCTTTCTTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACCCATAGAAATCTGTGGACACAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGCTTGGTTGTACCTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTCAATAAGAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAATTCCCTTAGATAAAGAATTCAGGAAGTATACTGCATTTACCATACCTAGTACAAATAATGAGACACCAGGGATTAGGTATGAGTACAATGTGCTGCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGCAAAATCCAGATATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAACTAAGACAACATCTGTTAAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATATGGGAAATGGACAGTACAGCCTATAATACTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTACGCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAGGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTTTAAGAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGCAATGGACAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTACAAAAGATAGCCACAGAAAGCATAGTAATATGGGGAAAAACTCCTAAATTTAGACTACCTATACAAAAAGAAACATGGGAGACATGGTGGGCAGAGTACTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAATTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACTAAATTAGGCAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAGGTTATCTCCCTAACGGACACAACAAATCAAAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATCAGAAGTAAACATAGTAACAGACTCACAATATACATTAGGAATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAATCAGATAATAGAGCAGTTAATAAAAAAGGAAAAAGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGACAAACTAGTCAGTGCTGGAGTCAGGAGAGTACTATTTCTAGATGGAATAGATAAGGCCCAAGAAGACCATGAGAAATATCACAGTAATTGGAGAGCAATGGCTGGTGATTTTAATATACCCCCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCAAAAAGGAGAGGCCATGCATGGACAAGTAGATTGTAGTCCAGGAATATGGCAACTAGATTGTACACATCTAGAAGGGAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTCTCCTGAAACTAGCAGGGAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTAATGTGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCCATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTATAGTGCAGGGGAAAGAATAGTAGATATAATAGCAACAGACCTACAAACTAAAGAATTACAGAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAG -MK115520.1,vif,4948,5527,5040,5619,forward,0.36979166666666674,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHRVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHRVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH*,ATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATGTTTCAAAGAAAACTAAAGGATGGTTTTATAGACATCACTATGAAAGCACTCATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTGGTAGTAACAACATATTGGGGCCTGAATACAGGAGAAAGAGAATGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGAAAAAGGAAATATAGCACACAAGTTGACCCTAACCTAGCAGACCAACTAATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACATAGAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGCTCTCTACAATACTTGGCACTAAAAGCATTAACAACACCAAAGAGAAGAAAGCCACCTTTACCTAGTGTTAGGAAACTGACAGAGGATAGATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAG -MK115520.1,vpr,5466,5760,5558,5850,forward,0.4038461538461544,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS*T,ATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAGAGCTTTTAGAGGAACTTAAGAATGAAGCGGTTAGACATTTTCCTAGGCCGTGGCTCCATGGCTTAGGACAACATATCTATGAAACTTATGGGGACACTTGGACAGGAGTGGAGGCCATAATAAGAACCCTGCAACAACTGCTGTTTATTCATTTCAGACTTGGGTGTCGACATAGCAGAATAGGCATTGTGCCACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACT -MK115520.1,tat_exon1,5737,5956,5830,6045,forward,0.29166666666666674,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ*,ATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCACCCAGGAAGTCAGCCTAAAACTCCTTGTACTAACTGCTATTGCAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAAAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGTAA -MK115520.1,rev_exon1,5876,5957,5969,6045,forward,0.6346153846153846,MAGRSGDSDEELLKAVRLIKILYQSSK,MAGRSGDSDEELLKAVRLIKILYQSSK,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGTAAG -MK115520.1,vpu,5968,6214,6061,6310,forward,0.6500000000000001,MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAEDSGNESEGDQEELSALMEMGHHAPGDVDDL,MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAEDSGNESEGDQEELSALMEMGHHAPGDVDDL*,ATGCAACCTCTGCACATAGCAGCAATAGTAGGATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGACCATAGTGTTAATAGAATATAGGAAAATATTAAGACAAAAAAGGATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAG -MK115520.1,env,6131,8672,6224,8795,forward,0.49065420560747675,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEVHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRDKMQKEYALFYKLDVVPIDDDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYGNKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSGTETFRPGGGNMKDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLDQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEVHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRDKMQKEYALFYKLDVVPIDDDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYGNKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSGTETFRPGGGNMKDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLDQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL*,ATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTGACAGTCTATTATGGGGTACCTGTATGGAAAGAAGCAAACACCACTCTATTTTGTGCATCGGATGCTAAAGCATATACCACAGAGGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGGATTGGAAAATGTGACAGAAAATTTTAACATGTGGAAAAATAACATGGTAGAACAGATGCATGAGGATGTAATCAATTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCACTAATCTGAATGTTACTAATACCAATAGCAGTAGTGAGGAGGGAAAGATGGCGGAAGAAATGAGAAACTGCTCTTTCAATATCACCACAAAAATAAGAGATAAGATGCAGAAAGAATATGCACTTTTTTATAAACTTGATGTAGTACCAATAGATGATGATAATACAAGTTATACATTGATAAATTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCTATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAGGATAAGAAGTTCAATGGATCAGGACCATGTAAAAATGTCAGCACAGTACAATGTACACATGGAATTAAGCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTTTAGCAGAAGAAGAGGTAGTAATTAGATCTGAAAATTTCACGAACAATGCTAAAACCATAATAGTACATCTGAAGGAACCTATACAAATTAATTGTACAAGACCCAACAACAATACAATGAAAAGTATCCCTCTAGGACCAGGAAGAGCATTCTATGCAACAGGAGCCATAATAGGAGATATAAGACAAGCACATTGTAACCTTAGTAGAAAAGCATGGAATAATACTTTAAAACAGGTAGTTGAAAAATTAAAAGAACAATATGGGAATAAAACAATAATCTTTAATCACTCCTCAGGAGGGGACCCAGAAATTATAATGCATACTTTTAATTGTGGAGGGGAATTTTTCTATTGTAATACAACACAGCTGTTTAATAGTACTTGGAATAGTACTTGGACTGGGAATGCTACCGAATTAGATGGAAACATCACACTCCCATGCAGAATAAAACAGATTATAAACAGGTGGCAAGAAGTAGGAAAAGCAATGTATGCCCCTCCCATTAGAGGAAAAATTAGATGTTCATCAAATATTACAGGGTTACTATTAGTAAGAGATGGTGGTAACACGAGCGGGACTGAGACCTTCAGACCTGGAGGAGGAAATATGAAGGACAATTGGAGGAGTGAATTATATAAATATAAAGTAGTAAAAATTGAGCCATTAGGAGTAGCACCCACCAGGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAAGCCAGGCTGTTATTGTCTGGTATAGTGCAACAGCAAAACAATTTGCTGAGAGCTATTGAGGCGCAACAACATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTACAGGATCAACAGCGCCTGGGAATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCCTGGAATGCTAGTTGGAGTAATAAATCTCTGGATCAGATTTGGGATAACATGACCTGGATGGAGTGGGAAAGAGAAATTAACAATTACACAGACACAATATACACCTTAATTGAAAAGGCGCAGAACCAGCAGGAAAAGAATGAACAAGAATTATTGGAATTGGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAAATGGCTGTGGTACATAAAATTATTCATAATGATAGTAGGAGGATTGATAGGTTTAAGAATAGTTTTTGCTGTACTTGCTATAGTAAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGTCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAGCTTATTTAATGTCACAGCCATCGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAAGAGCTTGTAGAGCTCTTCTCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCATTGTTATAA -MK115520.1,tat_exon2,8253,8349,8376,8469,forward,0.28666666666666596,RPTSQPRGDPTGPKESKKKVEKETETDQFD,RPTSQPRGDPTGPKESKKKVEKETETDQFD**,AGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGA -MK115520.1,rev_exon2,8254,8539,8377,8653,forward,0.4285714285714286,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVSLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVSLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE*CY*,GACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGTCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAG -MK115520.1,nef,8673,9294,8796,9417,forward,0.6162601626016186,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDNEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPTSLHGVEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDNEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPTSLHGVEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC*H*,ATGGGGGGCAAGTGGTCAAAAAGTAGTGGGGGTGGATGGCCTGCTGTAAGGGAAAGAATGAGACGAACTGAGCCAGCAGCAGAAGGGGTGGGAGCAGTATCTCGAGACCTGGAAAGACATGGAGCAGTCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGCGCCTGGCTGGAAGCACAAGAAGAGGACAATGAAGTGGGTTTTCCAGTCAGACCTCAGGTGCCTTTAAGACCAATGACTTTCAAAGGAGCTCTCGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCCCAAAAAAGACAAGATATCCTTGACCTGTGGGTCTACAACACACAAGGATACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGACCAGATATCCACTGACCTTTGGGTGGTGTTTCAAGCTAGTACCAGTGGAGCCAGAAGAGGCCAATCAAGGAGAGAACAACTGCTTGTTGCACCCTACGAGCCTGCATGGGGTGGAGGACCCGGAAAAAGAAGTATTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCACATGGCCCGAGAGAAGCATCCGGAGTACTACAAAGACTGCTGACATTGA -MK115503.1,gag,817,2323,789,2292,forward,0.2571999999999999,MGARASILSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWTTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSANVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE,MGARASILSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWTTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSANVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE*R*,ATGGGTGCGAGAGCGTCAATATTAAGCGGGGGAAAATTAGATGCATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATTTAGTATGGGCAAGCAGGGAGCTAGAACGATTTGCCGTTAACCCTGGCCTGTTAGAAACATCAGAGGGATGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATTTAATGCAGTAGCAGTCCTCTATTGTGTACATCAAAGGATACAGGTACAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGTAGCAGCAGCTGACACTGACACAGGAAACAGCAGCCAAAATTACCCCATAGTGCAGAACCTCCAGGGGCAAATGGTACATCAGCCCCTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAAAAGGCCTTCAGCCCAGAAGTCATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGACGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCTTGGGATTAAATAAAATAGTAAGGATGTATAGCCCTACCAGTATTCTGGATATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAGAACTTTAAGAGCTGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATTCGAATCCAGATTGTAAGACTATTTTAAAAGCATTAGGACCAGCAGCAACACTAGAGGAAATGATGACAGCATGTCAAGGAGTGGGGGGACCAGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAAATTCAGCTAATGTAATGATGCAGAGAGGCAATTTTAGAAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACATCAAATGAAAGACTGTACAGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAG -MK115503.1,pol,2109,5121,2084,5096,forward,0.14755732801595212,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSTGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSTGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAGGGGGGCAATTTAAAGAAGCTTTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACCCATAGAAATCTGTGGACACAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGCTTGGTTGTACCTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTCAATAAGAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAATTCCCTTAGATAAAGAATTCAGGAAGTATACTGCATTTACCATACCTAGTACAAATAATGAGACACCAGGGATTAGGTATGAGTACAATGTGCTGCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGCAAAATCCAGATATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAACTGAGACAACATCTGTTAAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAGTGGACAGTACAGCCTATAATACTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTACGCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAGGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTTTAAGAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGCAATGGACAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTACAAAAGATAGCCACAGAAAGCATAGTAATATGGGGAAAAACTCCTAAATTTAGACTACCTATACAAAAAGAAACATGGGAGACATGGTGGGCAGAGTACTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAATTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACTAAATTAGGCAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAGGTTATCTCCCTAACGGACACAACAAATCAAAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATCAGAAGTAAACATAGTAACAGACTCACAATATACATTAGGAATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAATCAGATAATAGAGCAGTTAATAAAAAAGGAAAAAGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGACAAACTAGTCAGTACTGGAGTCAGGAGAGTACTATTTCTAGATGGAATAGATAAGGCCCAAGAAGACCATGAGAAATATCACAGTAATTGGAGAGCAATGGCTGGTGATTTTAATATACCCCCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCAAAAAGGAGAGGCCATGCATGGACAAGTAGATTGTAGTCCAGGAATATGGCAACTAGATTGTACACATCTAGAAGGGAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTCTCCTGAAACTAGCAGGGAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTAATGTGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCCATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTATAGTGCAGGGGAAAGAATAGTAGATATAATAGCAACAGACCTACAAACTAAAGAATTACAGAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGGAGAAAAGCAAAAATCATTAGGGATTATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG -MK115503.1,vif,5065,5644,5040,5619,forward,0.35416666666666674,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH*,ATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATGTTTCAAAGAAAACTAAAGGATGGTTTTATAGACATCACTATGAAAGCACTCATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTGGTAGTAACAACATATTGGGGCCTGAATACAGGAGAAAGAGAATGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGAAAAAGGAAATATAGCACACAAGTTGACCCTAACCTAGCAGACCAACTAATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACATATAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGCTCTCTACAATACTTGGCACTAAAAGCATTAACAACACCAAAGAGAAGAAAGCCACCTTTACCTAGTGTTAGGAAACTGACAGAGGATAGATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAG -MK115503.1,vpr,5583,5877,5558,5850,forward,0.4038461538461544,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS*T,ATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAGAGCTTTTAGAGGAACTTAAGAATGAAGCGGTTAGACATTTTCCTAGGCCGTGGCTCCATGGCTTAGGACAACATATCTATGAAACTTATGGGGACACTTGGACAGGAGTGGAGGCCATAATAAGAACCCTGCAACAACTGCTGTTTATTCATTTCAGACTTGGGTGTCGACATAGCAGAATAGGCATTGTGCCACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACT -MK115503.1,tat_exon1,5854,6073,5830,6045,forward,0.29166666666666674,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ*,ATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCACCCAGGAAGTCAGCCTAAAACTCCTTGTACTAACTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAAAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGTAA -MK115503.1,rev_exon1,5993,6074,5969,6045,forward,0.6346153846153846,MAGRSGDSDEELLKAVRLIKILYQSSK,MAGRSGDSDEELLKAVRLIKILYQSSK,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGTAAG -MK115503.1,vpu,6085,6331,6061,6310,forward,0.6865853658536587,MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAKDSGNESEGDQEELSALMEMGHHAPGDVDDL,MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAKDSGNESEGDQEELSALMEMGHHAPGDVDDL*,ATGCAACCTCTGCACATAGCAGCAATAGTAGGATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGACCATAGTGTTAATAGAATATAGGAAAATATTAAGACAAAAAAGGATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAAAAGACAGTGGCAATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAG -MK115503.1,env,6248,8789,6224,8795,forward,0.49135514018691584,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEAHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRNKMQKEYALFYKLDVVPIDNDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYENKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSETETFRPGGGDMKDNWRSELYKYKVEKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEAHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRNKMQKEYALFYKLDVVPIDNDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYENKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSETETFRPGGGDMKDNWRSELYKYKVEKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL*,ATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTGACAGTCTATTATGGGGTACCTGTATGGAAAGAAGCAAACACCACTCTATTTTGTGCATCGGATGCTAAAGCATATACCACAGAGGCACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGGATTGGAAAATGTGACAGAAAATTTTAACATGTGGAAAAATAACATGGTAGAACAGATGCATGAGGATGTAATCAATTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCACTAATCTGAATGTTACTAATACCAATAGCAGTAGTGAGGAGGGAAAGATGGCGGAAGAAATGAGAAACTGCTCTTTCAATATCACCACAAAAATAAGAAATAAGATGCAGAAGGAATATGCACTTTTTTATAAACTTGATGTAGTACCAATAGATAATGATAATACAAGTTATACATTGATAAATTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCTATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAGGATAAGAAGTTCAATGGATCAGGACCATGTAAAAATGTCAGCACAGTACAATGTACACATGGAATTAAGCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTTTAGCAGAAGAAGAGGTAGTAATTAGATCTGAAAATTTCACGAACAATGCTAAAACCATAATAGTACATCTGAAGGAACCTATACAAATTAATTGTACAAGACCCAACAACAATACAATGAAAAGTATCCCTCTAGGACCAGGAAGAGCATTCTATGCAACAGGAGCCATAATAGGAGATATAAGACAAGCACATTGTAACCTTAGTAGAAAAGCATGGAATAATACTTTAAAACAGGTAGTTGAAAAATTAAAAGAACAATATGAGAATAAAACAATAATCTTTAATCACTCCTCAGGAGGGGACCCAGAAATTATAATGCATACTTTTAATTGTGGAGGGGAATTTTTCTATTGTAATACAACACAGCTGTTTAATAGTACTTGGAATAGTACTTGGACTGGGAATGCTACCGAATTAGATGGAAACATCACACTCCCATGCAGAATAAAACAGATTATAAACAGGTGGCAAGAAGTAGGAAAAGCAATGTATGCCCCTCCCATTAGAGGAAAAATTAGATGTTCATCAAATATTACAGGGTTACTATTAGTAAGAGATGGTGGTAACACGAGCGAGACTGAGACCTTCAGACCTGGAGGAGGAGATATGAAGGACAATTGGAGGAGTGAATTATATAAATATAAAGTAGAAAAAATTGAGCCATTAGGAGTAGCACCCACCAGGGCAAAGAGAAGAGTGGTGCAAAGAGAAAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAAGCCAGGCTGTTATTGTCTGGTATAGTGCAACAGCAAAACAATTTGCTGAGAGCTATTGAGGCGCAACAACATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTACAGGATCAACAGCGCCTGGGAATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCCTGGAATGCTAGTTGGAGTAATAAATCTCTGAATCAGATTTGGGATAACATGACCTGGATGGAGTGGGAAAGAGAAATTAACAATTACACAGACACAATATACACCTTAATTGAAAAGGCGCAGAACCAGCAGGAAAAAAATGAACAAGAATTATTGGAATTGGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAAATGGCTGTGGTACATAAAATTATTCATAATGATAGTAGGAGGATTGATAGGTTTAAGAATAGTTTTTGCTGTACTTGCTATAGTAAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGCCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAGCTTATTCAATGTCACAGCCATCGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAAGAGCTTGTAGAGCTCTTCTCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCATTGTTATAA -MK115503.1,tat_exon2,8370,8466,8376,8469,forward,0.28666666666666596,RPTSQPRGDPTGPKESKKKVEKETETDQFD,RPTSQPRGDPTGPKESKKKVEKETETDQFD**,AGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGA -MK115503.1,rev_exon2,8371,8656,8377,8653,forward,0.39560439560439553,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVPLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVPLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE*CY*,GACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGCCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAG -MK115503.1,nef,8790,9411,8796,9417,forward,0.6162601626016186,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPMSLHGMEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPMSLHGMEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC*H*,ATGGGGGGCAAGTGGTCAAAAAGTAGTGGGGGTGGATGGCCTGCTGTAAGGGAAAGAATGAGACGAACTGAGCCAGCAGCAGAAGGGGTGGGAGCAGTATCTCGAGACCTGGAAAGACATGGAGCAGTCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGCGCCTGGCTGGAAGCACAAGAAGAGGACAGTGAAGTGGGTTTTCCAGTCAGACCTCAGGTGCCTTTAAGACCAATGACTTTCAAAGGAGCTCTCGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCCCAAAAAAGACAAGATATCCTTGACCTGTGGGTCTACAACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGACCAGATATCCACTGACCTTTGGGTGGTGTTTCAAGCTAGTACCAGTGGAGCCAGAAGAGGCCAATCAAGGAGAGAACAACTGCTTGTTACACCCTATGAGCCTGCATGGGATGGAGGACCCGGAAAAAGAAGTATTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCACATGGCCCGAGAGAAGCATCCGGAGTACTACAAAGACTGCTGACATTGA -MK115570.1,gag,687,2193,789,2292,forward,0.25119999999999987,MGARASILSGGKLDEWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSANVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE,MGARASILSGGKLDEWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSANVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE*R*,ATGGGTGCGAGAGCGTCAATATTAAGCGGGGGAAAATTAGATGAATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATTTAGTATGGGCAAGCAGGGAGCTAGAACGATTTGCCGTTAACCCTGGCCTGTTAGAAACATCAGAGGGATGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATTTAATGCAGTAGCAGTCCTCTATTGTGTACATCAAAGGATACAGGTACAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGTAGCAGCAGCTGACACTGACACAGGAAACAGCAGCCAAAATTACCCCATAGTGCAGAACCTCCAGGGGCAAATGGTACATCAGCCCCTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAAAAGGCCTTCAGCCCAGAAGTCATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCTTGGGATTAAATAAAATAGTAAGGATGTATAGCCCTACCAGTATTCTGGATATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAGAACTTTAAGAGCTGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATTCGAATCCAGATTGTAAGACTATTTTAAAAGCATTAGGACCAGCAGCGACACTAGAGGAAATGATGACAGCATGTCAAGGAGTGGGGGGACCAGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAAATTCAGCTAATGTAATGATGCAGAGAGGCAATTTTAGAAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACATCAAATGAAAGACTGTACAGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAG -MK115570.1,pol,1979,4991,2084,5096,forward,0.14456630109670976,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAGGGGGGCAATTTAAAGAAGCTTTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACCCATAGAAATCTGTGGACACAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGCTTGGTTGTACCTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTCAATAAGAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAATTCCCTTAGATAAAGAATTCAGGAAGTATACTGCATTTACCATACCTAGTACAAATAATGAGACACCAGGGATTAGGTATGAGTACAATGTGCTGCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGCAAAATCCAGATATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAACTGAGACAACATCTGTTAAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAGTGGACAGTACAGCCTATAATACTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTACGCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAAGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTTTAAGAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGCAATGGACAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTACAAAAGATAGCCACAGAAAGCATAGTAATATGGGGAAAAACTCCTAAATTTAGACTACCTATACAAAAAGAAACATGGGAGACATGGTGGGCAGAGTACTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAATTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACTAAATTAGGCAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAGGTTATCTCCCTAACGGACACAACAAATCAAAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATCAGAAGTAAACATAGTAACAGACTCACAATATACATTAGGAATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAATCAGATAATAGAGCAGTTAATAAAAAAGGAAAAAGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGACAAACTAGTCAGTGCTGGAGTCAGGAGAGTACTATTTCTAGATGGAATAGATAAGGCCCAAGAAGACCATGAGAAATATCACAGTAATTGGAGAGCAATGGCTGGTGATTTTAATATACCCCCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCAAAAAGGAGAGGCCATGCATGGACAAGTAGATTGTAGTCCAGGAATATGGCAACTAGATTGTACACATCTAGAAGGGAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTCTCCTGAAACTAGCAGGGAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTAATGTGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCCATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTATAGTGCAGGGGAAAGAATAGTAGATATAATAGCAACAGACCTACAAACTAAAGAATTACAGAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGGAGAAAAGCAAAAATCATTAGGGATTATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG -MK115570.1,vif,4935,5514,5040,5619,forward,0.35416666666666674,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH*,ATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATGTTTCAAAGAAAACTAAAGGATGGTTTTATAGACATCACTATGAAAGCACTCATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTGGTAGTAACAACATATTGGGGCCTGAATACAGGAGAAAGAGAATGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGAAAAAGGAAATATAGCACACAAGTTGACCCTAACCTAGCAGACCAACTAATTCATCTGTATTATTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACATATAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGCTCTCTACAATACTTGGCACTAAAAGCATTAACAACACCAAAGAGAAGAAAGCCACCTTTACCTAGTGTTAGGAAACTGACAGAGGATAGATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAG -MK115570.1,vpr,5453,5747,5558,5850,forward,0.4038461538461544,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS*T,ATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAGAGCTTTTAGAGGAACTTAAGAATGAAGCGGTTAGACATTTTCCTAGGCCGTGGCTCCATGGCTTAGGACAACATATCTATGAAACTTATGGGGACACTTGGACAGGAGTGGAGGCCATAATAAGAACCCTGCAACAACTGCTGTTTATTCATTTCAGACTTGGGTGTCGACATAGCAGAATAGGCATTGTGCCACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACT -MK115570.1,tat_exon1,5724,5940,5830,6045,forward,0.29166666666666674,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ,ATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCACCCAGGAAGTCAGCCTAAAACTCCTTGTACTAACTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAAAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAG -MK115570.1,rev_exon1,5863,5941,5969,6045,forward,0.5769230769230769,MAGRSGDSDEELLKAVRLIKILYQSS,MAGRSGDSDEELLKAVRLIKILYQSS,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGT -MK115570.1,vpu,5955,6201,6061,6310,forward,0.6500000000000001,MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAEDSGNESEGDQEELSALMEMGHHAPGDVDDL,MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAEDSGNESEGDQEELSALMEMGHHAPGDVDDL*,ATGCAACCTCTGCACATAGCAGCAATAGTAGGATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGACCATAGTGTTAATAGAATATAGGAAAATATTAAGACAAAAAAGGATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAG -MK115570.1,env,6118,8659,6224,8795,forward,0.49649532710280364,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTSEAHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRNKMQKEYALFYKLDVVPIDKDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYENKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSGTETFRPGGGDMKDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTSEAHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRNKMQKEYALFYKLDVVPIDKDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYENKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSGTETFRPGGGDMKDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL*,ATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTGACAGTCTATTATGGGGTACCTGTATGGAAAGAAGCAAACACCACTCTATTTTGTGCATCGGATGCTAAAGCATATACCTCAGAGGCACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGGATTGGAAAATGTGACAGAAAATTTTAACATGTGGAAAAATAACATGGTAGAACAGATGCATGAGGATGTAATCAATTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCACTAATCTGAATGTTACTAATACCAATAGCAGTAGTGAGGAGGGAAAGATGGCGGAAGAAATGAGAAACTGCTCTTTCAATATCACCACAAAAATAAGAAATAAGATGCAGAAGGAATATGCACTTTTTTATAAACTTGATGTAGTACCAATAGATAAGGATAATACAAGTTATACATTGATAAATTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCTATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAGGATAAGAAGTTCAATGGATCAGGACCATGTAAAAATGTCAGCACAGTACAATGTACACATGGAATTAAGCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTTTAGCAGAAGAAGAGGTAGTAATTAGATCTGAAAATTTCACGAACAATGCTAAAACCATAATAGTACATCTGAAGGAACCTATACAAATTAATTGTACAAGACCCAACAACAATACAATGAAAAGTATCCCTCTAGGACCAGGAAGAGCATTCTATGCAACAGGAGCCATAATAGGAGATATAAGACAAGCACATTGTAACCTTAGTAGAAAAGCATGGAATAATACTTTAAAACAGGTAGTTGAAAAATTAAAAGAACAATATGAGAATAAAACAATAATCTTTAATCACTCCTCAGGAGGGGACCCAGAAATTATAATGCATACTTTTAATTGTGGAGGGGAATTTTTCTATTGTAATACAACACAGCTGTTTAATAGTACTTGGAATAGTACTTGGACTGGGAATGCTACCGAATTAGATGGAAACATCACACTCCCATGCAGAATAAAACAGATTATAAACAGGTGGCAAGAAGTAGGAAAAGCAATGTATGCCCCTCCCATTAGAGGAAAAATTAGATGTTCATCAAATATTACAGGGTTACTATTAGTAAGAGATGGTGGTAACACGAGCGGGACTGAGACCTTCAGACCTGGAGGAGGAGATATGAAGGACAATTGGAGGAGTGAATTATATAAATATAAAGTAGTAAAAATTGAGCCATTAGGAGTAGCACCCACCAGGGCAAAGAGAAGAGTGGTGCAAAGAGAAAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAAGCCAGGCTGTTATTGTCTGGTATAGTGCAACAGCAAAACAATTTGCTGAGAGCTATTGAGGCGCAACAACATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTACAGGATCAACAGCGCCTGGGAATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCCTGGAATGCTAGTTGGAGTAATAAATCTCTGAATCAGATTTGGGATAACATGACCTGGATGGAGTGGGAAAGAGAAATTAACAATTACACAGACACAATATACACCTTAATTGAAAAGGCGCAGAACCAGCAGGAAAAGAATGAACAAGAATTATTGGAATTGGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAAATGGCTGTGGTACATAAAATTATTCATAATGATAGTAGGAGGATTGATAGGTTTAAGAATAGTTTTTGCTGTACTTGCTATAGTAAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGCCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAGCTTATTCAATGTCACAGCCATCGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAAGAGCTTGTAGAGCTCTTCTCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCATTGTTATAA -MK115570.1,tat_exon2,8240,8336,8376,8469,forward,0.28666666666666596,RPTSQPRGDPTGPKESKKKVEKETETDQFD,RPTSQPRGDPTGPKESKKKVEKETETDQFD**,AGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGA -MK115570.1,rev_exon2,8241,8526,8377,8653,forward,0.39560439560439553,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVPLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVPLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE*CY*,GACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGCCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAG -MK115570.1,nef,8660,9281,8796,9417,forward,0.6162601626016186,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPMSLHGMEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPMSLHGMEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC*H*,ATGGGGGGCAAGTGGTCAAAAAGTAGTGGGGGTGGATGGCCTGCTGTAAGGGAAAGAATGAGACGAACTGAGCCAGCAGCAGAAGGGGTGGGAGCAGTATCTCGAGACCTGGAAAGACATGGAGCAGTCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGCGCCTGGCTGGAAGCACAAGAAGAGGACAGTGAAGTGGGTTTTCCAGTCAGACCTCAGGTGCCTTTAAGACCAATGACTTTCAAAGGAGCTCTCGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCCCAAAAAAGACAAGATATCCTTGACCTGTGGGTCTACAACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGACCAGATATCCACTGACCTTTGGGTGGTGTTTCAAGCTAGTACCAGTGGAGCCAGAAGAGGCCAATCAAGGAGAGAACAACTGCTTGTTACACCCTATGAGCCTGCATGGGATGGAGGACCCGGAAAAAGAAGTATTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCACATGGCCCGAGAGAAGCATCCGGAGTACTACAAAGACTGCTGACATTGA -MK115509.1,gag,555,2061,789,2292,forward,0.2571999999999999,MGARASILSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWTTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSANVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE,MGARASILSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWTTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSANVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE*R*,ATGGGTGCGAGAGCGTCAATATTAAGCGGGGGAAAATTAGATGCATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATTTAGTATGGGCAAGCAGGGAGCTAGAACGATTTGCCGTTAACCCTGGCCTGTTAGAAACATCAGAGGGATGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATTTAATGCAGTAGCAGTCCTCTATTGTGTACATCAAAGGATACAGGTACAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGTAGCAGCAGCTGACACTGACACAGGAAACAGCAGCCAAAATTACCCCATAGTGCAGAACCTCCAGGGGCAAATGGTACATCAGCCCCTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAAAAGGCCTTCAGCCCAGAAGTCATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGACGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCTTGGGATTAAATAAAATAGTAAGGATGTATAGCCCTACCAGTATTCTGGATATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAGAACTTTAAGAGCTGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATTCGAATCCAGATTGTAAGACTATTTTAAAAGCATTAGGACCAGCAGCAACACTAGAGGAAATGATGACAGCATGTCAAGGAGTGGGGGGACCAGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAAATTCAGCTAATGTAATGATGCAGAGAGGCAATTTTAGAAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACATCAAATGAAAGACTGTACAGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAG -MK115509.1,pol,1847,4859,2084,5096,forward,0.14755732801595212,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSTGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSTGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAGGGGGGCAATTTAAAGAAGCTTTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACCCATAGAAATCTGTGGACACAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGCTTGGTTGTACCTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTCAATAAGAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAATTCCCTTAGATAAAGAATTCAGGAAGTATACTGCATTTACCATACCTAGTACAAATAATGAGACACCAGGGATTAGGTATGAGTACAATGTGCTGCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGCAAAATCCAGATATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAACTGAGACAACATCTGTTAAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAGTGGACAGTACAGCCTATAATACTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTACGCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAGGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTTTAAGAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGCAATGGACAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTACAAAAGATAGCCACAGAAAGCATAGTAATATGGGGAAAAACTCCTAAATTTAGACTACCTATACAAAAAGAAACATGGGAGACATGGTGGGCAGAGTACTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAATTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACTAAATTAGGCAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAGGTTATCTCCCTAACGGACACAACAAATCAAAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATCAGAAGTAAACATAGTAACAGACTCACAATATACATTAGGAATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAATCAGATAATAGAGCAGTTAATAAAAAAGGAAAAAGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGACAAACTAGTCAGTACTGGAGTCAGGAGAGTACTATTTCTAGATGGAATAGATAAGGCCCAAGAAGACCATGAGAAATATCACAGTAATTGGAGAGCAATGGCTGGTGATTTTAATATACCCCCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCAAAAAGGAGAGGCCATGCATGGACAAGTAGATTGTAGTCCAGGAATATGGCAACTAGATTGTACACATCTAGAAGGGAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTCTCCTGAAACTAGCAGGGAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTAATGTGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCCATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTATAGTGCAGGGGAAAGAATAGTAGATATAATAGCAACAGACCTACAAACTAAAGAATTACAGAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGGAGAAAAGCAAAAATCATTAGGGATTATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG -MK115509.1,vif,4803,5382,5040,5619,forward,0.35416666666666674,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH*,ATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATGTTTCAAAGAAAACTAAAGGATGGTTTTATAGACATCACTATGAAAGCACTCATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTGGTAGTAACAACATATTGGGGCCTGAATACAGGAGAAAGAGAATGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGAAAAAGGAAATATAGCACACAAGTTGACCCTAACCTAGCAGACCAACTAATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACATATAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGCTCTCTACAATACTTGGCACTAAAAGCATTAACAACACCAAAGAGAAGAAAGCCACCTTTACCTAGTGTTAGGAAACTGACAGAGGATAGATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAG -MK115509.1,vpr,5321,5615,5558,5850,forward,0.4038461538461544,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS*T,ATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAGAGCTTTTAGAGGAACTTAAGAATGAAGCGGTTAGACATTTTCCTAGGCCGTGGCTCCATGGCTTAGGACAACATATCTATGAAACTTATGGGGACACTTGGACAGGAGTGGAGGCCATAATAAGAACCCTGCAACAACTGCTGTTTATTCATTTCAGACTTGGGTGTCGACATAGCAGAATAGGCATTGTGCCACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACT -MK115509.1,tat_exon1,5592,5808,5830,6045,forward,0.29166666666666674,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ,ATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCACCCAGGAAGTCAGCCTAAAACTCCTTGTACTAACTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAAAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAG -MK115509.1,rev_exon1,5731,5809,5969,6045,forward,0.5769230769230769,MAGRSGDSDEELLKAVRLIKILYQSS,MAGRSGDSDEELLKAVRLIKILYQSS,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGT -MK115509.1,vpu,5823,6069,6061,6310,forward,0.6865853658536587,MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAKDSGNESEGDQEELSALMEMGHHAPGDVDDL,MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAKDSGNESEGDQEELSALMEMGHHAPGDVDDL*,ATGCAACCTCTGCACATAGCAGCAATAGTAGGATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGACCATAGTGTTAATAGAATATAGGAAAATATTAAGACAAAAAAGGATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAAAAGACAGTGGCAATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAG -MK115509.1,env,5986,8527,6224,8795,forward,0.49135514018691584,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEAHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRNKMQKEYALFYKLDVVPIDNDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYENKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSETETFRPGGGDMKDNWRSELYKYKVEKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEAHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRNKMQKEYALFYKLDVVPIDNDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYENKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSETETFRPGGGDMKDNWRSELYKYKVEKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL*,ATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTGACAGTCTATTATGGGGTACCTGTATGGAAAGAAGCAAACACCACTCTATTTTGTGCATCGGATGCTAAAGCATATACCACAGAGGCACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGGATTGGAAAATGTGACAGAAAATTTTAACATGTGGAAAAATAACATGGTAGAACAGATGCATGAGGATGTAATCAATTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCACTAATCTGAATGTTACTAATACCAATAGCAGTAGTGAGGAGGGAAAGATGGCGGAAGAAATGAGAAACTGCTCTTTCAATATCACCACAAAAATAAGAAATAAGATGCAGAAGGAATATGCACTTTTTTATAAACTTGATGTAGTACCAATAGATAATGATAATACAAGTTATACATTGATAAATTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCTATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAGGATAAGAAGTTCAATGGATCAGGACCATGTAAAAATGTCAGCACAGTACAATGTACACATGGAATTAAGCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTTTAGCAGAAGAAGAGGTAGTAATTAGATCTGAAAATTTCACGAACAATGCTAAAACCATAATAGTACATCTGAAGGAACCTATACAAATTAATTGTACAAGACCCAACAACAATACAATGAAAAGTATCCCTCTAGGACCAGGAAGAGCATTCTATGCAACAGGAGCCATAATAGGAGATATAAGACAAGCACATTGTAACCTTAGTAGAAAAGCATGGAATAATACTTTAAAACAGGTAGTTGAAAAATTAAAAGAACAATATGAGAATAAAACAATAATCTTTAATCACTCCTCAGGAGGGGACCCAGAAATTATAATGCATACTTTTAATTGTGGAGGGGAATTTTTCTATTGTAATACAACACAGCTGTTTAATAGTACTTGGAATAGTACTTGGACTGGGAATGCTACCGAATTAGATGGAAACATCACACTCCCATGCAGAATAAAACAGATTATAAACAGGTGGCAAGAAGTAGGAAAAGCAATGTATGCCCCTCCCATTAGAGGAAAAATTAGATGTTCATCAAATATTACAGGGTTACTATTAGTAAGAGATGGTGGTAACACGAGCGAGACTGAGACCTTCAGACCTGGAGGAGGAGATATGAAGGACAATTGGAGGAGTGAATTATATAAATATAAAGTAGAAAAAATTGAGCCATTAGGAGTAGCACCCACCAGGGCAAAGAGAAGAGTGGTGCAAAGAGAAAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAAGCCAGGCTGTTATTGTCTGGTATAGTGCAACAGCAAAACAATTTGCTGAGAGCTATTGAGGCGCAACAACATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTACAGGATCAACAGCGCCTGGGAATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCCTGGAATGCTAGTTGGAGTAATAAATCTCTGAATCAGATTTGGGATAACATGACCTGGATGGAGTGGGAAAGAGAAATTAACAATTACACAGACACAATATACACCTTAATTGAAAAGGCGCAGAACCAGCAGGAAAAAAATGAACAAGAATTATTGGAATTGGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAAATGGCTGTGGTACATAAAATTATTCATAATGATAGTAGGAGGATTGATAGGTTTAAGAATAGTTTTTGCTGTACTTGCTATAGTAAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGCCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAGCTTATTCAATGTCACAGCCATCGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAAGAGCTTGTAGAGCTCTTCTCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCATTGTTATAA -MK115509.1,tat_exon2,8108,8204,8376,8469,forward,0.28666666666666596,RPTSQPRGDPTGPKESKKKVEKETETDQFD,RPTSQPRGDPTGPKESKKKVEKETETDQFD**,AGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGA -MK115509.1,rev_exon2,8109,8394,8377,8653,forward,0.39560439560439553,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVPLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVPLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE*CY*,GACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGCCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAG -MK115509.1,nef,8528,9149,8796,9417,forward,0.6162601626016186,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPMSLHGMEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPMSLHGMEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC*H*,ATGGGGGGCAAGTGGTCAAAAAGTAGTGGGGGTGGATGGCCTGCTGTAAGGGAAAGAATGAGACGAACTGAGCCAGCAGCAGAAGGGGTGGGAGCAGTATCTCGAGACCTGGAAAGACATGGAGCAGTCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGCGCCTGGCTGGAAGCACAAGAAGAGGACAGTGAAGTGGGTTTTCCAGTCAGACCTCAGGTGCCTTTAAGACCAATGACTTTCAAAGGAGCTCTCGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCCCAAAAAAGACAAGATATCCTTGACCTGTGGGTCTACAACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGACCAGATATCCACTGACCTTTGGGTGGTGTTTCAAGCTAGTACCAGTGGAGCCAGAAGAGGCCAATCAAGGAGAGAACAACTGCTTGTTACACCCTATGAGCCTGCATGGGATGGAGGACCCGGAAAAAGAAGTATTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCACATGGCCCGAGAGAAGCATCCGGAGTACTACAAAGACTGCTGACATTGA -MK115702.1,gag,246,1782,789,2292,forward,0.2866000000000015,MGARASVLSGGELDKWEKIRLRPGGRKRYKLKHIVWASRELERFAVNPGLLETSEGCKQIMGQLQPALQTGSEELRSLYNTVAVLYCVHQRIDVKDTKEALDKIEEEQNKSKKKTQQAAAADTGNNSQVSQNYPIVQNMQGQMVHQAISPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVQAGPVAPGQIREPRGSDIAGTTSTLQEQIAWMTHNPPVPVGEIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKGWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQGVGGPSHKARVLAEAMSQATGAHAIMMQRGNFKNQRKTVKCFNCGKEGHIARNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESLRPTAPPVESFRFGEETAAPFQKQEPRDKEMSPLASLKSLFGNDQ,MGARASVLSGGELDKWEKIRLRPGGRKRYKLKHIVWASRELERFAVNPGLLETSEGCKQIMGQLQPALQTGSEELRSLYNTVAVLYCVHQRIDVKDTKEALDKIEEEQNKSKKKTQQAAAADTGNNSQVSQNYPIVQNMQGQMVHQAISPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVQAGPVAPGQIREPRGSDIAGTTSTLQEQIAWMTHNPPVPVGEIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKGWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQGVGGPSHKARVLAEAMSQATGAHAIMMQRGNFKNQRKTVKCFNCGKEGHIARNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESLRPTAPPVESFRFGEETAAPFQKQEPRDKEMSPLASLKSLFGNDQ*SQ*,ATGGGTGCGAGAGCGTCAGTATTAAGCGGCGGCGAATTAGACAAATGGGAAAAAATTCGGTTAAGGCCAGGAGGAAGGAAACGATATAAATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGCTTCGCAGTCAACCCTGGCCTGTTAGAAACATCAGAAGGCTGCAAACAAATAATGGGACAACTCCAACCAGCCCTTCAGACAGGATCAGAAGAACTTAGATCATTATATAATACAGTAGCAGTCCTCTATTGTGTACATCAGAGGATAGATGTAAAGGATACCAAAGAAGCTTTAGACAAAATAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGACACAGCAAGCAGCAGCCGCTGACACAGGAAACAACAGCCAAGTCAGCCAAAATTACCCCATAGTGCAGAACATGCAGGGACAAATGGTACATCAGGCCATATCACCCAGAACCCTAAATGCATGGGTAAAAGTAATAGAAGAGAAGGCATTCAGCCCAGAAGTAATACCCATGTTTTCAGCACTATCAGAGGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATCAATGAGGAGGCTGCAGAATGGGATAGAGTGCATCCAGTGCAGGCAGGACCTGTTGCACCAGGCCAGATAAGGGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGATGACACATAATCCACCCGTCCCAGTAGGAGAAATCTATAAAAGATGGATAATCTTGGGACTAAATAAAATAGTAAGGATGTATAGCCCTGTCAGCATTTTGGACATAAGACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAAGACTCTAAGAGCTGAGCAAGCTTCACAGGAAGTAAAAGGTTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAACCCAGATTGTAAGACCATTTTAAAAGCATTGGGACCAGGAGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCCAGCCATAAGGCAAGGGTTTTGGCAGAAGCAATGAGCCAAGCAACAGGTGCACATGCCATAATGATGCAGAGAGGCAATTTTAAGAACCAAAGAAAGACTGTTAAGTGCTTCAATTGTGGCAAAGAAGGGCATATAGCCAGAAATTGCAGGGCCCCTAGGAAAAGGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGACTGCACTGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGAAGGCCGGGGAATTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAGGAGAGCCTCAGGCCAACAGCCCCACCAGTAGAGAGCTTCAGGTTTGGGGAAGAGACAGCAGCCCCCTTTCAGAAGCAGGAACCGAGAGACAAGGAGATGTCTCCCTTAGCTTCCCTCAAATCACTCTTTGGCAACGACCAGTAGTCACAATAA -MK115702.1,pol,1544,4586,2084,5096,forward,0.18175473579262214,FFRENLAFPQGKAGEFPSEQTRANSPTRGEPQANSPTSRELQVWGRDSSPLSEAGTERQGDVSLSFPQITLWQRPVVTIKIGGQIKEALLDTGADDTVLEEMALPGRWKPKMIGGIGGFIKVRQYDQIAIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKIKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPIFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSITVLDVGDAYFSVPLDEEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPEIVIYQYMDDLYVGSDLEIGQHRTKIEELRGHLLKWGFTTPDKKHQKEPPFLWMGYELHPDRWTVQPIKLPEKEIWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPTKELIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKISTESIVIWGKTPKFKLPIQKETWEIWWTDYWQATWIPEWEFVSTPPLVKLWYQLEKEPIVGAETFYVDGASNRETKLGKAGYITDRGRQKVVTLNDTTNQKTELQAILLALQDSGLEANIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKIYLTWVPAHKGIGGNEQVDKLVSTGIRKVLFLDGIDRAQEEHERYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQIDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSNFTSTTVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED,FFRENLAFPQGKAGEFPSEQTRANSPTRGEPQANSPTSRELQVWGRDSSPLSEAGTERQGDVSLSFPQITLWQRPVVTIKIGGQIKEALLDTGADDTVLEEMALPGRWKPKMIGGIGGFIKVRQYDQIAIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKIKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPIFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSITVLDVGDAYFSVPLDEEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPEIVIYQYMDDLYVGSDLEIGQHRTKIEELRGHLLKWGFTTPDKKHQKEPPFLWMGYELHPDRWTVQPIKLPEKEIWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPTKELIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKISTESIVIWGKTPKFKLPIQKETWEIWWTDYWQATWIPEWEFVSTPPLVKLWYQLEKEPIVGAETFYVDGASNRETKLGKAGYITDRGRQKVVTLNDTTNQKTELQAILLALQDSGLEANIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKIYLTWVPAHKGIGGNEQVDKLVSTGIRKVLFLDGIDRAQEEHERYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQIDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSNFTSTTVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGAAGGCCGGGGAATTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAGGAGAGCCTCAGGCCAACAGCCCCACCAGTAGAGAGCTTCAGGTTTGGGGAAGAGACAGCAGCCCCCTTTCAGAAGCAGGAACCGAGAGACAAGGAGATGTCTCCCTTAGCTTCCCTCAAATCACTCTTTGGCAACGACCAGTAGTCACAATAAAGATAGGGGGGCAAATAAAGGAAGCTCTATTAGACACAGGAGCAGATGATACAGTATTAGAAGAAATGGCGTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATAGCCATAGAAATTTGTGGACATAAAGCAATTGGTACAGTATTAGTAGGACCTACACCTGTCAATATAATTGGAAGAAATCTATTGACTCAGATTGGTTGCACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAGTTAAAGCCAGGAATGGATGGCCCAAAAATTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATAGGGCCTGAAAATCCATACAATACTCCAATATTTGCCATAAAGAAAAAAGACAGTACTAAGTGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGATTAAAAAAGAAAAAATCAATAACAGTACTGGATGTGGGTGATGCCTATTTTTCAGTTCCCTTAGATGAAGAATTCAGGAAGTATACTGCATTTACCATACCTAGCATAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAATGTAGCATGACAAAAATATTAGAGCCTTTTAGAAAACAAAATCCAGAAATAGTTATCTATCAATACATGGACGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAACTAAGAGGACATCTGTTGAAGTGGGGGTTTACCACACCAGACAAAAAACATCAGAAGGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAGATGGACAGTACAGCCTATAAAGCTGCCAGAGAAAGAAATCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTGAACTGGGCAAGTCAGATTTACCCAGGAATTAAAGTAAAACAATTATGTAAACTCCTTAGGGGAACCAAAGCATTAACAGAAGTAATACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGAGAAATTCTAAAAGAACCAGTACATGGAGTGTATTATGACCCAACAAAAGAATTAATAGCAGAAATACAGAAGCAAGGGCAAGGCCAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCGAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAGAAAATATCTACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTACCCATACAAAAGGAAACATGGGAAATATGGTGGACAGACTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTTAGTACTCCTCCCCTAGTAAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTATGTAGATGGGGCATCTAATAGGGAGACTAAATTAGGAAAAGCAGGATATATTACTGACAGAGGAAGACAAAAGGTTGTCACCCTAAATGACACAACCAATCAAAAGACAGAGTTACAAGCAATTCTTCTAGCATTGCAGGATTCAGGATTAGAAGCAAACATAGTGACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATAAAAGTGAATCAGAGTTAGTCAGTCAAATAATAGAGCAGTTAATAAAAAAGGAAAAGATCTACCTGACATGGGTACCAGCACATAAAGGAATTGGAGGAAATGAGCAAGTAGATAAATTAGTCAGTACTGGGATTAGGAAAGTATTATTTTTAGATGGAATAGATAGGGCCCAAGAAGAGCATGAGAGATATCACAGTAATTGGAGAGCAATGGCTAGTGATTTCAACCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGAGAAGCTATGCATGGACAAATAGACTGTAGTCCAGGAATATGGCAGCTAGATTGTACACACTTAGAAGGAAAAATTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAAACAGGGCAGGAAACAGCATACTTTATCTTAAAATTAGCAGGAAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTACCACAGTTAAGGCCGCCTGTTGGTGGGCGGGGGTCAAGCAGGAATTTGGTATTCCCTACAATCCCCAGAGTCAAGGAGTGGTAGAATCTATGAATAAAGAATTAAAGAAAATAATAGGACAGGTCAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAGTAGATATAATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATTTCAAAAATTCAAAACTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCGGTAGTAATACAGGATAATAGTGACATAAAAGTAGTGCCAAGAAGAAAAGCAAAAATCATTAGGGATTATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG -MK115702.1,vif,4530,5109,5040,5619,forward,0.34375,MANRWQVMIVWQVDRMRIRTWNSLVKHHMYVSKKTKGWFYRHHYESTHPKISSEVHIPLGDAELVVTTYWGLQPGERDWHLGQGVSIEWRKGRYRTHVDPNLADQLIHLHYFDCFSESAIRHAILGHRVSPRCEYQAGHNKVGSLQYLALAALRAPKKIKPPLPSVTKLTEDRWNKPQKTKGHRGSHTMNGH,MANRWQVMIVWQVDRMRIRTWNSLVKHHMYVSKKTKGWFYRHHYESTHPKISSEVHIPLGDAELVVTTYWGLQPGERDWHLGQGVSIEWRKGRYRTHVDPNLADQLIHLHYFDCFSESAIRHAILGHRVSPRCEYQAGHNKVGSLQYLALAALRAPKKIKPPLPSVTKLTEDRWNKPQKTKGHRGSHTMNGH*,ATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGTATGTTTCAAAGAAAACTAAGGGATGGTTTTATAGACATCACTATGAGAGCACTCATCCAAAAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTGAGTTGGTAGTAACAACATATTGGGGTTTGCAGCCAGGGGAAAGGGACTGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGAAAAGGGAGATATAGAACACACGTGGACCCTAACCTAGCAGACCAACTAATTCATCTGCATTACTTTGATTGTTTTTCAGAATCTGCTATAAGACATGCCATATTAGGACATAGAGTTAGCCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGATCTCTACAGTACTTGGCACTAGCAGCATTAAGAGCACCAAAAAAGATAAAGCCACCTTTGCCTAGTGTTACTAAACTAACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACACTAG -MK115702.1,vpr,5048,5342,5558,5850,forward,0.44230769230769296,MEQAPEDQGPQREPYNEWTLELLEELKQEAVRHFPRPWLHSLGQYIYETYGDTWAGVEAIIRMLQQLLFIHFRIGCQHSRIGIIPQRRARNGSSRS,MEQAPEDQGPQREPYNEWTLELLEELKQEAVRHFPRPWLHSLGQYIYETYGDTWAGVEAIIRMLQQLLFIHFRIGCQHSRIGIIPQRRARNGSSRS*P,ATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACACTAGAGCTTTTAGAAGAACTTAAGCAGGAAGCTGTTAGGCATTTTCCTAGGCCATGGCTTCATAGCTTAGGGCAATATATCTATGAAACTTATGGGGATACTTGGGCAGGGGTGGAAGCCATAATAAGAATGCTGCAACAACTGCTGTTTATTCATTTCAGAATTGGGTGTCAACATAGCAGAATAGGCATTATCCCACAGAGGAGAGCAAGAAATGGATCCAGTAGATCCTAACCT -MK115702.1,tat_exon1,5319,5535,5830,6045,forward,0.6319444444444446,MDPVDPNLEPWKHPGSQPKTACNNCYCKKCCLHCQVCFTRKGLGISYGRKKRRRRRGSLKGRQAHQDSLSKQ,MDPVDPNLEPWKHPGSQPKTACNNCYCKKCCLHCQVCFTRKGLGISYGRKKRRRRRGSLKGRQAHQDSLSKQ,ATGGATCCAGTAGATCCTAACCTAGAGCCCTGGAAGCATCCAGGAAGTCAGCCTAAGACTGCTTGTAACAATTGCTATTGTAAAAAGTGTTGCCTTCATTGCCAAGTTTGTTTCACACGAAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACGGAGACGAGGATCTCTTAAAGGCCGTCAGGCTCATCAAGACTCTCTATCAAAGCAG -MK115702.1,rev_exon1,5458,5536,5969,6045,forward,0.8076923076923077,MAGRSGDGDEDLLKAVRLIKTLYQSS,MAGRSGDGDEDLLKAVRLIKTLYQSS,ATGGCAGGAAGAAGCGGAGACGGAGACGAGGATCTCTTAAAGGCCGTCAGGCTCATCAAGACTCTCTATCAAAGCAGT -MK115702.1,vpu,5550,5808,6061,6310,forward,0.807317073170732,MLSLEVIVAITALVVAGIIAIVVWTIVLIEYRKILRQRKIDKILDRIRERAEDSGNESEGDQEELSALVEMGHNAHHAPWDIND,MLSLEVIVAITALVVAGIIAIVVWTIVLIEYRKILRQRKIDKILDRIRERAEDSGNESEGDQEELSALVEMGHNAHHAPWDIND**,ATGTTATCTTTAGAAGTAATAGTAGCAATAACAGCATTAGTAGTAGCAGGAATAATAGCAATAGTTGTGTGGACCATAGTACTTATAGAATATAGGAAAATATTAAGACAAAGAAAAATAGACAAGATACTTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAGGGGGATCAGGAAGAATTGTCAGCGCTTGTGGAGATGGGGCACAATGCTCACCATGCTCCTTGGGATATTAATGATTAGTAA -MK115702.1,env,5716,8257,6224,8795,forward,0.6026869158878512,MRVRGIRKNCQRLWRWGTMLTMLLGILMISNATEQLWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEMVLINVTENFNMWKNDMVDQMQEDIVSLWDQSLKPCVKLTPLCVTLNCTNLTIEPNNATKANISGRLEGKGEMTNCSFNVTTSLRDKRKKEYALFYKLDVVATGENNNSFRLISCNTSEITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGKCNNVSIVQCTHGIRPVVSTQLLLNGSLAEEEVVVRSANFSDNTKTIIVQLNKTVVINCTRPNNNTRRSIHIAPGRAFYATGDIIGDIRKAHCNISKEDWNTTLNQVAKKLQEQFENATIDFKPSSGGDPEIVMHSFNCGGEFFYCNTTELFSWNATTKLFTWNATNSNNGTIILPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGGTNGTGNRNETFRPGGGNMKDNWRSELYKYKVVEIKPLGVAPTKAKRRVVQREKRAVTIGAMFLGFLGAAGSTMGAASLTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICTTTVPWNISWSNRTLNNIWDNLTWMQWDTEINNYTNKIYQLLEEAQNQQEKNEQELLELDKWANLWNWFDISNWLWYIKIFILIVGGLIGLRIVFTVLSIVNRVRQGYSPLSFQTRFPVPRGPDRPEGTEEEGGERDRDRSDRLVNGFLTLIWVDLRSLCLFSYHRLRDLLLIVTRIVELLGRRGWEALKYWWNVLQYWSQELKNSAVSLLNATAIVVAEGTDRIIELAQRICRAE,MRVRGIRKNCQRLWRWGTMLTMLLGILMISNATEQLWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEMVLINVTENFNMWKNDMVDQMQEDIVSLWDQSLKPCVKLTPLCVTLNCTNLTIEPNNATKANISGRLEGKGEMTNCSFNVTTSLRDKRKKEYALFYKLDVVATGENNNSFRLISCNTSEITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGKCNNVSIVQCTHGIRPVVSTQLLLNGSLAEEEVVVRSANFSDNTKTIIVQLNKTVVINCTRPNNNTRRSIHIAPGRAFYATGDIIGDIRKAHCNISKEDWNTTLNQVAKKLQEQFENATIDFKPSSGGDPEIVMHSFNCGGEFFYCNTTELFSWNATTKLFTWNATNSNNGTIILPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGGTNGTGNRNETFRPGGGNMKDNWRSELYKYKVVEIKPLGVAPTKAKRRVVQREKRAVTIGAMFLGFLGAAGSTMGAASLTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICTTTVPWNISWSNRTLNNIWDNLTWMQWDTEINNYTNKIYQLLEEAQNQQEKNEQELLELDKWANLWNWFDISNWLWYIKIFILIVGGLIGLRIVFTVLSIVNRVRQGYSPLSFQTRFPVPRGPDRPEGTEEEGGERDRDRSDRLVNGFLTLIWVDLRSLCLFSYHRLRDLLLIVTRIVELLGRRGWEALKYWWNVLQYWSQELKNSAVSLLNATAIVVAEGTDRIIELAQRICRAE*DRA*,ATGAGAGTGAGGGGGATCAGGAAGAATTGTCAGCGCTTGTGGAGATGGGGCACAATGCTCACCATGCTCCTTGGGATATTAATGATTAGTAATGCTACAGAACAATTGTGGGTCACAGTCTATTATGGGGTACCTGTATGGAAAGAAGCAACAACCACTCTATTCTGTGCATCAGATGCTAAAGCATATGATACAGAGGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAATGGTATTAATAAATGTGACAGAAAATTTTAACATGTGGAAAAATGACATGGTAGATCAAATGCAAGAGGACATAGTCAGCTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACCTTAAATTGCACTAATTTGACCATTGAGCCAAACAATGCTACTAAAGCCAATATTAGTGGGAGGTTAGAGGGGAAAGGAGAAATGACAAACTGCTCTTTCAATGTCACCACAAGCCTAAGAGATAAGAGGAAGAAAGAATATGCACTCTTTTATAAACTTGATGTAGTAGCAACAGGTGAAAATAATAACAGCTTTAGGTTGATAAGTTGTAATACCTCAGAGATTACACAGGCCTGTCCAAAGGTATCATTTGAACCAATTCCCATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAATGATAAAAAGTTCAATGGAACAGGAAAATGTAACAATGTCAGCATAGTACAATGTACACATGGAATTAGGCCAGTAGTATCAACTCAACTGCTGTTAAATGGCAGTCTAGCAGAAGAAGAGGTAGTAGTTAGATCTGCCAATTTCTCAGACAATACTAAGACCATAATAGTACAGCTGAACAAAACTGTAGTAATTAATTGTACAAGACCCAACAACAATACAAGGAGAAGTATACATATAGCACCAGGGAGAGCATTTTATGCAACAGGAGATATAATAGGAGATATAAGAAAAGCACATTGTAACATTAGTAAAGAAGATTGGAATACCACTTTAAACCAGGTGGCTAAAAAATTACAAGAACAATTTGAGAATGCAACAATAGACTTTAAACCATCCTCAGGAGGGGACCCAGAAATTGTAATGCACAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAATACAACGGAACTATTTTCTTGGAATGCTACAACAAAACTGTTTACTTGGAATGCTACAAATAGCAATAATGGAACCATCATACTCCCATGTAGAATAAAACAAATTATAAACATGTGGCAAGAGGTAGGAAAAGCAATGTATGCCCCTCCCATTCGTGGACAAATTAGATGTTCGTCAAATATTACAGGACTGCTATTAACAAGAGATGGTGGGACTAACGGGACAGGGAACAGGAATGAGACCTTCAGACCTGGAGGGGGAAATATGAAGGACAATTGGAGAAGTGAATTATATAAATACAAAGTAGTAGAAATTAAACCATTAGGAGTAGCACCCACCAAGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGACCATAGGAGCTATGTTCCTTGGGTTCCTGGGGGCAGCAGGAAGCACTATGGGCGCAGCATCACTGACGCTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAACAGCAGAACAATCTGCTGAGGGCGATTGAGGCGCAGCAGCATCTGTTGCAACTCACAGTCTGGGGCATAAAACAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGGTACCTAAGAGATCAACAGCTCCTGGGGATTTGGGGCTGCTCTGGAAAACTCATCTGCACCACTACTGTGCCTTGGAATATTAGTTGGAGTAATAGAACTCTGAATAACATTTGGGACAATTTGACTTGGATGCAGTGGGATACAGAAATTAACAATTACACAAACAAAATATACCAATTACTTGAGGAAGCGCAGAACCAGCAGGAAAAGAATGAACAAGAATTATTGGAATTAGATAAATGGGCAAATTTGTGGAATTGGTTTGACATATCAAACTGGCTGTGGTACATAAAAATATTCATATTAATAGTAGGAGGCTTAATAGGTTTAAGAATAGTTTTTACTGTACTTTCTATAGTGAATAGAGTTAGGCAGGGATACTCACCATTATCGTTTCAGACCCGCTTCCCAGTCCCGAGGGGACCCGACAGGCCCGAAGGAACCGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGACAGATTAGTGAACGGATTCTTGACACTTATCTGGGTCGATCTGAGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCACTCAAATATTGGTGGAATGTCCTGCAATATTGGAGTCAGGAACTAAAGAATAGTGCTGTTAGCTTGCTAAATGCCACAGCCATAGTAGTAGCTGAGGGGACAGATAGGATTATAGAATTAGCACAAAGAATTTGTAGAGCAGAATAAGACAGGGCTTGA -MK115702.1,tat_exon2,7874,7970,8376,8469,forward,0.6866666666666661,RPASQSRGDPTGPKEPKKKVERETETDPTD,RPASQSRGDPTGPKEPKKKVERETETDPTD**,AGACCCGCTTCCCAGTCCCGAGGGGACCCGACAGGCCCGAAGGAACCGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGACAGATTAGTGA -MK115702.1,rev_exon2,7875,8160,8377,8653,forward,0.3296703296703296,DPLPSPEGTRQARRNRRRRWRERQRQIRQISERILDTYLGRSEEPVPLQLPPLERLTLDCNEDCGTSGTQGVGSTQILVECPAILESGTKE,DPLPSPEGTRQARRNRRRRWRERQRQIRQISERILDTYLGRSEEPVPLQLPPLERLTLDCNEDCGTSGTQGVGSTQILVECPAILESGTKE*CC*,GACCCGCTTCCCAGTCCCGAGGGGACCCGACAGGCCCGAAGGAACCGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGACAGATTAGTGAACGGATTCTTGACACTTATCTGGGTCGATCTGAGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCACTCAAATATTGGTGGAATGTCCTGCAATATTGGAGTCAGGAACTAAAGAATAGTGCTGTTAG -MK115702.1,nef,8275,8896,8796,9417,forward,0.658536585365846,MGGKWSKHSKSEWADVRERMAQTEAAADGVGAVSRDLERHGAITSSNTATNNAACAWLEAQEEEEVGFPVKPQVPLRPMTYKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRFPLCFGWCFKLVPVDPDKVEEANKGENNSLLHPMSLHGMEDTEREVLMWKFDSRLAFHHVAREKHPEYFKDC,MGGKWSKHSKSEWADVRERMAQTEAAADGVGAVSRDLERHGAITSSNTATNNAACAWLEAQEEEEVGFPVKPQVPLRPMTYKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRFPLCFGWCFKLVPVDPDKVEEANKGENNSLLHPMSLHGMEDTEREVLMWKFDSRLAFHHVAREKHPEYFKDC*,ATGGGTGGCAAGTGGTCAAAACATAGTAAGAGTGAATGGGCTGATGTAAGGGAAAGAATGGCACAAACTGAGGCAGCAGCAGATGGGGTGGGAGCAGTATCTCGAGATCTGGAAAGACATGGAGCAATCACAAGTAGCAATACAGCAACTAACAATGCTGCTTGTGCTTGGCTAGAAGCACAAGAGGAGGAGGAGGTGGGTTTTCCAGTCAAACCTCAGGTGCCTTTGAGACCAATGACCTACAAGGGAGCTTTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGTTAATTTATTCCCAAAAAAGACAAGACATCCTTGATCTGTGGGTCTACAACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGAACCAGATTCCCACTGTGCTTTGGATGGTGCTTCAAGCTAGTACCAGTTGATCCAGATAAGGTGGAAGAAGCCAATAAAGGAGAGAACAACAGCTTGTTACACCCTATGAGCCTGCATGGGATGGAGGACACCGAGAGAGAGGTGTTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCACGTAGCCAGAGAGAAACATCCGGAGTACTTCAAGGACTGCTGA -MK115095.1,gag,2,1697,789,2292,forward,1.8384000000000005,MTETLLVQNANPDCKTILKALRPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTKSASIMVQGGNLKNQRKNVKCFNCGKEGHTAKNCRAPKKKGC,SGFSFTFKSLFGRHLGDLKAKEKPEELSRRRTRLAERARQEARRGD**VRRNF*LAEARRREIGARASVLSGGELDR*EKIYLRPGRKKKYRLKHIVWASRELERFAVNPGLLKSSEGCRQILGQLQPALQTGSEELRSLYNTIAVLYCVHQKINVKDTKEALDKIEEEQNKSKKKAQQAAADTGNSSNSQVSQNYPIVQNLQGQIVHQPISPRTLNA*VKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVRRHQAAMQMLKETINDEAAE*DRLHPVHAGPIAPGQMKEPRRSDIAGTTSTLQEQIR*MTNNPPIPVGEIYKR*IILRLNKIVKMYSPVSILDIRQRPKEPFKDYVDRFYKTLKAEQASQDVKN*MTETLLVQNANPDCKTILKALRPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTKSASIMVQGGNLKNQRKNVKCFNCGKEGHTAKNCRAPKKKGC*KCGKKGHQMKDCTKRQANFLRKIWPSHKGRPKNFLQSRPEPTAPPAESFRFKEEATAPPQKQETKDQELYPLASLRSLFGNDP*YQ*,TCTGGTTTCTCTTTCACTTTCAAGTCCCTGTTCGGGCGCCATCTAGGGGACCTGAAAGCGAAAGAGAAACCAGAGGAGCTCTCTCGACGCAGGACTCGGCTTGCTGAGCGCGCACGGCAAGAGGCGAGGCGCGGCGACTAGTGAGTACGCCGAAATTTTTGACTAGCAGAGGCTAGAAGGAGAGAGATAGGTGCGAGAGCGTCAGTATTAAGCGGCGGAGAATTAGATAGATAGGAAAAAATTTACCTAAGGCCAGGGAGAAAGAAAAAATATAGATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTCAACCCTGGCCTGTTAAAGTCATCAGAAGGCTGCAGGCAAATTCTAGGACAGCTACAACCAGCCCTTCAGACAGGATCAGAAGAACTTAGATCATTATATAATACAATAGCAGTCCTCTATTGTGTACATCAAAAGATAAATGTAAAAGACACCAAAGAAGCTCTAGACAAAATAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAACAAGCAGCAGCTGACACAGGAAACAGCAGCAACAGCCAGGTCAGCCAAAATTACCCTATAGTGCAGAACCTACAAGGGCAAATAGTACATCAACCCATATCACCTAGAACTTTAAATGCATAGGTAAAAGTAATAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCACTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGAGAAGACATCAAGCAGCCATGCAGATGTTAAAAGAAACCATCAATGATGAAGCTGCAGAATAAGATAGATTGCATCCAGTGCATGCAGGCCCTATTGCACCAGGCCAGATGAAGGAACCAAGAAGAAGTGACATAGCAGGAACCACTAGTACCCTTCAGGAACAAATAAGATAGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATAGATAATCCTGAGGTTAAATAAAATAGTAAAAATGTATAGCCCTGTCAGCATTTTGGACATAAGACAAAGACCAAAGGAACCCTTTAAGGATTATGTAGACCGGTTCTATAAAACTCTAAAGGCTGAACAAGCGTCACAGGATGTAAAAAATTAGATGACAGAAACCTTGTTAGTCCAAAATGCGAATCCAGATTGTAAGACCATTTTAAAAGCATTAAGACCAGCAGCTACATTAGAAGAAATGATGACAGCATGTCAGGGAGTAGGAGGACCCGGCCACAAGGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAACAAAGTCAGCCTCCATAATGGTGCAAGGAGGCAATTTAAAGAACCAAAGAAAGAATGTTAAGTGTTTCAATTGTGGCAAAGAAGGACACACAGCCAAAAATTGCAGGGCCCCTAAGAAAAAAGGCTGTTAGAAATGTGGAAAGAAAGGACACCAAATGAAAGATTGTACTAAGAGACAGGCTAATTTTTTAAGGAAGATTTGGCCTTCCCACAAGGGAAGGCCAAAGAATTTTCTCCAGAGCAGACCAGAGCCAACAGCCCCGCCAGCAGAGAGCTTCAGGTTTAAGGAAGAGGCAACAGCTCCCCCTCAGAAGCAGGAGACGAAGGACCAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCATAATATCAATAA -MK115095.1,pol,1489,4579,2084,5096,forward,1.9898305084745753,KPKIIEGIRGFIKVRQYDQVPIKICRHKAISTVLIRPTPVNIIRRNLLTQLSCTLNFPISPIETVPVKLKPGIDSPKVKQWPLTEEKIKALIEICAEIEKERKITKIRPKNPYNTPVFAIKKKDSTK,FFKEDLAFPQGKAKEFSPEQTRANSPASRELQV*GRGNSSPSEAGDEGPGTVSFSFPQITLWQRPIISIKIRRQLKEALLDTGADDTVLKEINLPGK*KPKIIEGIRGFIKVRQYDQVPIKICRHKAISTVLIRPTPVNIIRRNLLTQLSCTLNFPISPIETVPVKLKPGIDSPKVKQWPLTEEKIKALIEICAEIEKERKITKIRPKNPYNTPVFAIKKKDSTK*RKLVDFRELNKRTQDF*KVQLRIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNEAPRVRYQYNVLPQR*KGSPAIFQSSMTKILEPFRKENPDIVIYQYIDDLYVRSDLEIEQHRTKIEELRQHLLK*RLTTPDKKHQKEPPFL*ISYELHPNKWTVQPIQLPDKDS*TVNDIQKLVRKLN*ASQIYPEIKVKQLCKLLRRTKALTEVVPLTEEAELELAENKEILKEPVHRAYYDPSKDLIAEVQKQGGDQWTYQIYQKPFKNLKTKKYARTRGAHTNDVKQLTEAVQKIALEAIVI*RKTPKFKLPIQKET*EM**TEYWQAT*IPE*EFVNTPPLVKL*YQLEKEPIVRAETFYVDRAANRETKLRKARYVTDRRRQKVVSLIDTTNQRTKLHAIHLALQDSGSTVNIVTDSQYALKIIQAQPDKSESELVSQIIEQLIKKEKIYLA*VPAHKRIRRNEQVDKLVSSRIRKVLFLDRIDKAQEEHEKYHSN*RAMASDFNLPPVVAKEIVASCDKCQLKREPMHGQVDCSPGIWQLDCTHLERKIILVAVHVASRYIEAEVIAAETGQETAYFILKLAGRWPVKIIHTDNGSNFTSTTVKAAC**ARIKQKFSIPYNPQSQGVVESMNNELKKIIGQVKDQAEHLKTAVQMAVFIHNFKRKRGIGGYSAEERIIDIIATDIQTKELQKQISKIQNFQVYYRDSREPLWKGPAKLL*KGEGAVVIQDNSDIKVVPRRKAKILRDYGKQMAGDDCVASRQDED*NMEQFSKTPYAYFKESSEMSLQTSP*,TTTTTTAAGGAAGATTTGGCCTTCCCACAAGGGAAGGCCAAAGAATTTTCTCCAGAGCAGACCAGAGCCAACAGCCCCGCCAGCAGAGAGCTTCAGGTTTAAGGAAGAGGCAACAGCTCCCCCTCAGAAGCAGGAGACGAAGGACCAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCATAATATCAATAAAAATAAGAAGGCAACTAAAAGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAAAAGAAATAAATTTGCCAGGAAAATAGAAACCAAAAATAATAGAAGGAATTAGAGGTTTTATCAAAGTAAGACAGTATGATCAGGTACCCATAAAAATTTGTAGACATAAAGCTATAAGTACAGTATTAATAAGACCTACACCAGTCAACATAATTAGAAGAAATCTGTTGACCCAGCTTAGTTGCACTTTAAATTTTCCCATCAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATAGATAGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAGGCATTAATAGAAATTTGTGCAGAAATAGAAAAAGAAAGGAAAATTACAAAAATTAGGCCTAAGAATCCATATAATACTCCAGTGTTTGCCATAAAGAAAAAAGACAGTACTAAATAGAGAAAATTAGTAGATTTCCGAGAACTTAATAAAAGAACACAAGACTTTTAAAAAGTTCAACTAAGAATACCACATCCCGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTAGATGTAGGTGATGCATATTTTTCAGTTCCTTTAGACAAAGACTTCAGAAAGTATACTGCATTTACCATACCCAGTATAAACAATGAGGCACCAAGAGTTAGATATCAGTACAATGTGCTTCCACAAAGATAGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAAGAAAATCCAGACATAGTTATCTATCAATACATAGATGATTTGTATGTAAGATCTGACTTAGAAATAGAGCAGCACAGAACAAAAATAGAAGAACTGAGACAACATCTGTTAAAGTAAAGACTCACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTTCTTTAGATAAGTTATGAACTCCATCCTAATAAATGGACAGTACAGCCTATACAGCTGCCAGACAAAGACAGCTAGACTGTCAATGACATACAGAAGTTAGTAAGAAAGTTAAATTAGGCAAGCCAGATCTATCCAGAGATTAAAGTAAAGCAATTATGTAAACTCCTTAGAAGAACCAAAGCACTAACAGAAGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAAGGAGATTCTAAAAGAACCAGTACATAGAGCATATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGAGGAGACCAATGGACATATCAAATTTATCAGAAGCCATTTAAAAATCTGAAAACAAAGAAATATGCAAGAACGAGAGGTGCCCACACTAATGATGTAAAACAGTTAACAGAGGCAGTGCAAAAAATAGCCCTAGAAGCCATAGTAATATAGAGAAAGACTCCTAAATTTAAACTACCTATACAAAAAGAAACATAAGAAATGTAGTAGACAGAGTATTGGCAAGCCACCTAGATTCCTGAGTAGGAATTTGTCAATACCCCTCCCTTAGTAAAATTATAGTACCAGTTAGAGAAAGAACCCATAGTAAGAGCAGAAACTTTCTATGTAGATAGGGCAGCTAATAGAGAGACTAAATTAAGAAAAGCAAGGTATGTTACGGACAGAAGAAGACAAAAAGTTGTCTCCCTAATAGACACAACAAATCAGAGGACTAAGTTACACGCAATTCATCTAGCTTTGCAGGATTCAGGATCAACAGTAAACATAGTGACAGACTCACAATATGCCTTAAAGATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAGTCAAATAATAGAGCAGCTAATAAAAAAAGAAAAAATTTACCTGGCATAAGTCCCAGCACACAAAAGAATTAGAAGAAATGAACAAGTAGATAAATTAGTCAGTAGTAGAATCAGAAAAGTACTATTTCTAGATAGAATAGATAAAGCCCAAGAAGAACATGAAAAATATCACAGTAATTAAAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAGTGTCAGTTAAAAAGAGAACCTATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAACTAGATTGTACACATTTAGAAAGAAAAATTATCCTAGTAGCAGTTCATGTAGCCAGTAGATACATAGAAGCAGAAGTTATTGCAGCAGAAACAGGGCAGGAAACAGCATACTTTATCTTAAAATTGGCAGGAAGATGGCCAGTAAAAATAATACATACAGACAATGGCAGCAATTTCACCAGCACTACAGTTAAGGCCGCCTGTTAGTAGGCAAGGATCAAGCAGAAATTTAGTATTCCCTACAATCCTCAAAGTCAAGGAGTAGTAGAATCTATGAATAATGAATTAAAGAAAATTATAGGACAGGTAAAAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATTCACAATTTTAAAAGAAAAAGGGGGATTGGGGGGTACAGTGCAGAGGAAAGAATAATAGACATAATAGCAACAGACATACAAACTAAAGAACTACAAAAACAAATTTCAAAAATTCAAAATTTTCAGGTTTATTACAGGGACAGCAGAGAACCACTTTGGAAAGGACCAGCAAAGCTCCTCTAGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATCCTTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAAGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATATTTCAAAGAAAGCTCAGAGATGAGTTTACAGACATCACCATGA -MK115095.1,vif,4445,5024,5040,5619,forward,1.8546875000000016,MENRWQVMIVWQVDKMRIRTWNSLVKHHMHISKKAQR,MENRWQVMIVWQVDKMRIRTWNSLVKHHMHISKKAQR*VYRHHHESHNPKTSSEVHIPLREARLVIKTY*GLHTGERDWHLGQGVSIEWRKKRYSTQVDPGLADQLIHLYYFDCFSESAIRNAILGHRVRPRCEYQAGHNKVGSLQYLALTALITPKRRKPPLPSVTKLTEDRWNKSQRTKGHKRSHTMNGH*,ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAAGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATATTTCAAAGAAAGCTCAGAGATGAGTTTACAGACATCACCATGAAAGCCATAATCCAAAAACAAGTTCAGAAGTACACATCCCATTAAGGGAAGCAAGATTAGTAATAAAAACATATTAAGGTCTGCATACAGGAGAAAGAGACTGGCATTTAGGCCAGGGAGTATCCATAGAATGGAGGAAAAAGAGATATAGCACACAAGTAGACCCTGGCCTGGCAGACCAACTAATTCACCTGTATTATTTTGATTGTTTTTCAGAATCTGCTATAAGGAATGCCATATTAGGACATAGAGTTAGGCCTAGGTGTGAATATCAGGCAGGACATAACAAGGTAGGATCCCTACAATACTTGGCATTAACAGCATTAATAACACCAAAAAGGAGAAAGCCACCTTTGCCCAGTGTTACAAAATTAACAGAGGACAGATGGAACAAGTCCCAGAGGACCAAAGGCCACAAAAGGAGCCATACAATGAATGGACATTAG -MK115095.1,vpr,4963,5257,5558,5850,forward,0.5961538461538467,MEQVPEDQRPQKEPYNEWTLELLEELKSEAVRHFPRPWLHSLGQYIYETYGDTWAEVEAIIRTLQQLLFIHFRIRCQHSRIRIIRQRRARNRASRS,MEQVPEDQRPQKEPYNEWTLELLEELKSEAVRHFPRPWLHSLGQYIYETYGDTWAEVEAIIRTLQQLLFIHFRIRCQHSRIRIIRQRRARNRASRS*L,ATGGAACAAGTCCCAGAGGACCAAAGGCCACAAAAGGAGCCATACAATGAATGGACATTAGAGCTCTTAGAAGAACTTAAGAGTGAAGCTGTTAGGCATTTTCCTAGACCATGGCTTCATAGCTTAGGACAATATATCTATGAAACTTATGGAGATACTTGGGCAGAGGTAGAAGCCATAATAAGAACCCTGCAACAACTGTTGTTCATTCATTTCAGAATTAGGTGTCAACATAGCAGGATAAGAATTATTCGACAGAGGAGAGCAAGAAATAGAGCCAGTAGATCCTAACTT -MK115095.1,tat_exon1,5288,5453,5830,6045,forward,1.1236111111111113,MTACNNCYCKRCCFHCQVCFTRKGLGISHGRKKRRQRRRASHSSQNHQAALPEQ,MTACNNCYCKRCCFHCQVCFTRKGLGISHGRKKRRQRRRASHSSQNHQAALPEQ*,ATGACTGCTTGTAACAATTGCTATTGTAAACGGTGTTGCTTTCATTGCCAAGTTTGCTTCACAAGAAAAGGCTTAGGCATCTCCCATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTTCTCACAGCAGTCAGAATCATCAAGCGGCTCTACCAGAGCAGTAA -MK115095.1,rev_exon1,5373,5451,5969,6045,forward,0.6538461538461537,MAGRSGDSDEELLTAVRIIKRLYQSS,MAGRSGDSDEELLTAVRIIKRLYQSS,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTTCTCACAGCAGTCAGAATCATCAAGCGGCTCTACCAGAGCAGT -MK115095.1,vpu,5465,5711,6061,6310,forward,1.3548780487804881,SIVLIEYKKILRQKKIDRLIDRIRERAEDSGNESDEDQEELSAIVEIGHLVP,MHALEIAAIVRLVVAAIIAIVV*SIVLIEYKKILRQKKIDRLIDRIRERAEDSGNESDEDQEELSAIVEIGHLVP*DSDDM*,ATGCATGCCTTAGAAATAGCAGCAATAGTAAGATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTAGTCTATAGTATTAATAGAATATAAGAAAATTTTAAGACAAAAGAAAATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAAAGTGACGAGGACCAGGAAGAATTATCAGCAATTGTAGAGATAGGGCATCTTGTTCCTTAGGATAGTGATGATATGTAG -MK115095.1,env,5628,8229,6224,8795,forward,1.8721962616822374,MTEEGEIKNCSFNVTTGIRDKVTKEHALFYKLDVVPIDESSGNTTGKYRMINCNTSVITQACPKVSFEPIPIHFCAPASFAILKCKDKKFNRTGECRNVSTVQCTHRIRPVVSTQLLLNGSLAEEEIVIRSANLSNNAKTIIVQLNKSVKINCTRPNNNTRRSIHIGPRRAFYRTDIIGDIRQAHCNISRKD,MKVTRTRKNYQQL*R*GILFLRIVMICSANNL*VTVYYEVPVWKEATTTLFCASDAKAYKTEKHNVWATHACVPTDPSPQEVALENVTETFNMWKNDMVEQMHEDIISL*DQSLKPCVKLTPLCVTLNCTDELNLNCPNNNTCSNNTKYNMTEEGEIKNCSFNVTTGIRDKVTKEHALFYKLDVVPIDESSGNTTGKYRMINCNTSVITQACPKVSFEPIPIHFCAPASFAILKCKDKKFNRTGECRNVSTVQCTHRIRPVVSTQLLLNGSLAEEEIVIRSANLSNNAKTIIVQLNKSVKINCTRPNNNTRRSIHIGPRRAFYRTDIIGDIRQAHCNISRKD*NDTLKQIVIKLKEKFKNKTIVFNQSSGKDPEIVMHSFNCREEFFYCNTTQLFNST*NNNT*NGTDN*NSTESNSTITLPCRIKQIINLWQEVRRAMYAPPIQGQIRCSSNITGLLLVRDSKSNNSSNDTKTFRPRRGDMKDN*RSELYKYKVVKIEPLRIAPTHAKRRVVQKEKRAIGLRAFFLKFLGAAGSTIGAASVTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTV*GIKQLQARVLALERYLKDQQLLKI*GCSRKLICTTNVP*NVS*SPR*NRSLDKI*TNMT*KQ*EKEIDNYTDTIYNLIEQSQNQQEQNEQDLLALDK*ASL*N*FDITQWL*YIKIFIMIVRGLISLRIVFTILSIVNRVRQRYSPLSLQTLLPTQRGPDRPERTEEGGREKDRGTSTRLVHRFLALI*DDLRSLFLFSYHRLRDLLLIVARIVELLRRRK*EALKYW*NLLQY*SQEIKNSAVSLLNTTAIAVAERTDKIIEVLQRGFRAILHIPTRIRQGLEKALL*,ATGAAAGTGACGAGGACCAGGAAGAATTATCAGCAATTGTAGAGATAGGGCATCTTGTTCCTTAGGATAGTGATGATATGTAGTGCCAACAACTTGTAGGTCACAGTCTATTATGAGGTACCTGTATGGAAAGAAGCAACTACCACTCTATTTTGTGCATCAGATGCTAAAGCATATAAGACAGAGAAGCATAATGTTTGGGCAACCCATGCCTGTGTACCCACAGACCCCAGCCCACAGGAAGTAGCATTAGAAAATGTGACAGAAACATTTAACATGTGGAAAAATGACATGGTAGAGCAGATGCATGAGGATATAATCAGTTTATAAGATCAAAGCCTAAAGCCATGTGTGAAACTAACCCCACTCTGTGTTACTTTAAATTGCACTGATGAATTAAATCTAAATTGCCCTAACAATAATACTTGTAGTAATAATACTAAATATAATATGACGGAAGAAGGAGAAATAAAAAACTGCTCTTTCAATGTCACCACAGGAATAAGAGATAAGGTGACAAAAGAACATGCACTTTTCTATAAACTTGATGTAGTACCAATAGATGAAAGTAGTGGAAATACTACAGGCAAATATAGGATGATAAATTGTAACACCTCAGTCATTACACAAGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTTTTGTGCCCCGGCTAGTTTTGCGATTCTAAAGTGTAAAGATAAGAAATTCAATAGAACAGGAGAATGTAGAAATGTCAGCACAGTACAATGTACACATAGAATTAGGCCAGTAGTATCAACTCAACTGCTGCTGAACGGCAGTCTAGCAGAAGAAGAGATAGTAATTAGATCTGCCAATCTCTCGAACAATGCTAAAACCATAATAGTACAGCTGAATAAATCTGTAAAAATTAATTGTACAAGACCCAACAATAATACAAGAAGAAGTATACACATAGGACCAAGGAGGGCATTTTATAGAACAGACATAATAGGAGATATAAGACAAGCGCATTGTAACATTAGTAGGAAAGATTAGAATGACACTTTAAAACAGATAGTTATAAAATTAAAAGAAAAATTTAAGAATAAAACAATAGTCTTTAATCAATCCTCAGGAAAGGACCCAGAGATAGTGATGCATAGTTTTAATTGTAGAGAAGAATTTTTCTACTGTAATACAACACAGCTGTTTAATAGTACTTAGAATAATAATACTTAGAATGGTACTGATAATTAGAATAGTACTGAATCAAATAGCACTATCACACTCCCATGCAGAATAAAACAAATTATAAACTTGTGGCAGGAAGTAAGAAGAGCAATGTATGCCCCTCCCATCCAAGGGCAAATTAGATGTTCATCAAATATTACAGGGCTGCTGCTAGTAAGAGATAGTAAGAGCAACAATAGTAGTAATGATACAAAGACCTTCAGGCCTAGAAGAGGAGATATGAAGGACAATTAGAGAAGTGAATTATATAAATATAAAGTAGTCAAAATTGAACCATTAAGAATAGCACCCACCCATGCAAAGAGAAGAGTGGTGCAGAAAGAAAAAAGAGCAATAGGACTTAGAGCTTTCTTCCTTAAGTTCTTAGGAGCAGCAGGAAGCACTATAGGCGCAGCGTCAGTGACGCTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAGCAGCAAAACAATTTGCTGAGAGCTATTGAGGCGCAACAGCATCTGTTGCAACTCACAGTCTAAGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTTTAGAAAGATACCTAAAAGATCAACAGCTCCTGAAGATTTGAGGTTGCTCTAGAAAACTCATTTGCACCACTAATGTGCCCTAAAATGTTAGTTAGAGCCCTAGATAGAATAGATCTCTAGATAAGATTTAGACTAACATGACCTAGAAGCAGTAGGAAAAAGAAATTGACAATTATACAGACACAATATATAACTTAATTGAACAATCACAGAACCAACAAGAACAGAATGAACAAGACTTATTAGCATTAGATAAGTAGGCAAGTTTGTAGAATTAGTTTGACATTACACAGTGGCTATAGTATATAAAAATATTCATAATGATAGTAAGAGGCTTGATAAGTTTAAGAATAGTTTTTACTATACTGTCTATAGTGAATAGAGTTAGGCAGAGATACTCACCATTGTCATTGCAGACCCTCCTCCCAACCCAGAGGGGACCCGACAGGCCCGAAAGAACAGAAGAAGGAGGTAGAGAGAAAGACAGAGGCACATCCACGAGATTAGTGCATAGATTCTTAGCACTCATCTAGGACGACCTGCGGAGCCTGTTCCTCTTCAGTTACCACCGCTTGAGAGACTTACTCTTGATTGTGGCGAGGATTGTAGAACTTCTAAGACGCAGAAAGTAAGAAGCACTGAAGTATTGGTAGAATCTCCTGCAGTATTAGAGTCAGGAAATAAAGAATAGTGCAGTTAGCTTGCTCAACACCACAGCAATAGCAGTAGCTGAAAGGACAGATAAGATTATAGAAGTATTACAAAGAGGCTTTAGAGCTATTCTCCACATACCTACACGAATAAGACAGGGCTTAGAAAAAGCTTTGCTATAA -MK115095.1,tat_exon2,7810,7903,8376,8469,forward,0.4866666666666659,RPSSQPRGDPTGPKEQKKEVERKTEAHPRD,RPSSQPRGDPTGPKEQKKEVERKTEAHPRD*,AGACCCTCCTCCCAACCCAGAGGGGACCCGACAGGCCCGAAAGAACAGAAGAAGGAGGTAGAGAGAAAGACAGAGGCACATCCACGAGATTAG -MK115095.1,rev_exon2,7811,8087,8377,8653,forward,1.2406593406593407,ILSTHLGRPAEPVPLQLPPLERLTLDCGEDCRTSKTQKVRSTEVLVESPAVLESGNKE,DPPPNPEGTRQARKNRRRR*RERQRHIHEISA*ILSTHLGRPAEPVPLQLPPLERLTLDCGEDCRTSKTQKVRSTEVLVESPAVLESGNKE*,GACCCTCCTCCCAACCCAGAGGGGACCCGACAGGCCCGAAAGAACAGAAGAAGGAGGTAGAGAGAAAGACAGAGGCACATCCACGAGATTAGTGCATAGATTCTTAGCACTCATCTAGGACGACCTGCGGAGCCTGTTCCTCTTCAGTTACCACCGCTTGAGAGACTTACTCTTGATTGTGGCGAGGATTGTAGAACTTCTAAGACGCAGAAAGTAAGAAGCACTGAAGTATTGGTAGAATCTCCTGCAGTATTAGAGTCAGGAAATAAAGAATAG -MK115095.1,nef,8287,8878,8796,9417,forward,0.9788617886178801,MRQARPVRKPEPAATKVRAASRDLERHGALTSSNTAATNADVACLEAQQEEKEVGFPVRPQVPLRPMTYKGALDISHFLKEKGGLDGLIYSKRRQDILDLWLYNTQGYFPDWQNYTPRPGVRFPLCFRWCFKLVPVDPDKVEEASVGENNCLLSPENLHRIEDEHREVLQWRFDSRLAFHHVARELHPEYYKDC,MRQARPVRKPEPAATKVRAASRDLERHGALTSSNTAATNADVACLEAQQEEKEVGFPVRPQVPLRPMTYKGALDISHFLKEKGGLDGLIYSKRRQDILDLWLYNTQGYFPDWQNYTPRPGVRFPLCFRWCFKLVPVDPDKVEEASVGENNCLLSPENLHRIEDEHREVLQWRFDSRLAFHHVARELHPEYYKDC*H*,ATGAGACAAGCTAGGCCAGTAAGAAAGCCAGAGCCAGCAGCAACTAAGGTAAGAGCAGCATCTCGAGACCTAGAAAGACATGGAGCACTTACAAGTAGCAATACAGCAGCTACCAATGCTGATGTTGCCTGCCTAGAAGCACAACAGGAAGAAAAAGAGGTAGGTTTTCCAGTCAGACCTCAGGTACCTTTAAGGCCAATGACTTACAAAGGAGCTCTAGATATTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGATGGGCTAATTTACTCCAAAAGAAGACAAGACATCCTTGATCTGTGGCTCTACAACACACAAGGCTACTTCCCTGACTGGCAGAACTACACACCAAGGCCAGGAGTCAGATTTCCACTGTGTTTTAGATGGTGCTTCAAGCTAGTACCAGTTGATCCAGATAAGGTAGAAGAGGCCAGTGTAGGAGAGAACAACTGCTTGTTAAGCCCCGAAAACCTGCATAGAATAGAAGACGAACACAGAGAAGTATTGCAGTGGAGGTTTGACAGCCGCCTAGCATTTCATCACGTGGCCCGAGAGCTGCATCCGGAGTATTACAAGGACTGCTGACACTAA -MK115490.1,gag,549,2055,789,2292,forward,0.2571999999999999,MGARASILSGGKLDSWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSVNVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE,MGARASILSGGKLDSWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSVNVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE*R*,ATGGGTGCGAGAGCGTCAATATTAAGCGGGGGAAAATTAGATTCATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATTTAGTATGGGCAAGCAGGGAGCTAGAACGATTTGCCGTTAACCCTGGCCTGTTAGAAACATCAGAGGGATGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATTTAATGCAGTAGCAGTCCTCTATTGTGTACATCAAAGGATACAGGTACAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGTAGCAGCAGCTGACACTGACACAGGAAACAGCAGCCAAAATTACCCCATAGTGCAGAACCTCCAGGGGCAAATGGTACATCAGCCCCTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAAAAGGCCTTCAGCCCAGAAGTCATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGTCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCTTGGGATTAAATAAAATAGTAAGGATGTATAGCCCTACCAGTATTCTGGATATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAGAACTTTAAGAGCTGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATTCGAATCCAGATTGTAAGACTATTTTAAAAGCATTAGGACCAGCAGCAACACTAGAGGAAATGATGACAGCATGTCAAGGAGTGGGGGGACCAGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAAATTCAGTTAATGTAATGATGCAAAGAGGCAATTTTAGAAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACATCAAATGAAAGACTGTACAGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAG -MK115490.1,pol,1841,4853,2084,5096,forward,0.14755732801595212,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVHQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVHQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAGGGGGGCAATTTAAAGAAGCTTTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACCCATAGAAATCTGTGGACACAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGCTTGGTTGTACCTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTCAATAAGAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAATTCCCTTAGATAAAGAATTCAGGAAGTATACTGCATTTACCATACCTAGTACAAATAATGAGACACCAGGGATTAGGTATGAGTACAATGTGCTGCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGCAAAATCCAGATATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAACTGAGACAACATCTGTTAAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAGTGGACAGTACAGCCTATAATACTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTACGCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAGGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTTTAAGAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGCAATGGACAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTACAAAAGATAGCCACAGAAAGCATAGTAATATGGGGAAAAACTCCTAAATTTAGACTACCTATACAAAAAGAAACGTGGGAGACATGGTGGGCAGAGTACTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAATTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACTAAATTAGGCAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAGGTTATCTCCCTAACGGACACAACAAATCAAAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATCAGAAGTAAACATAGTAACAGACTCACAATATACATTAGGAATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCCATCAGATAATAGAGCAGTTAATAAAAAAGGAAAAAGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGACAAACTAGTCAGTGCTGGAGTCAGGAGAGTACTATTTCTAGATGGAATAGATAAGGCCCAAGAAGACCATGAGAAATATCACAGTAATTGGAGAGCAATGGCTGGTGATTTTAATATACCCCCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCAAAAAGGAGAGGCCATGCATGGACAAGTAGATTGTAGTCCAGGAATATGGCAACTAGATTGTACACATCTAGAAGGGAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTCTCCTGAAACTAGCAGGGAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTAATGTGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCCATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTATAGTGCAGGGGAAAGAATAGTAGATATAATAGCAACAGACCTACAAACTAAAGAATTACAGAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGGAGAAAAGCAAAAATCATTAGGGATTATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG -MK115490.1,vif,4797,5376,5040,5619,forward,0.36979166666666674,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPDLADQLIHLYYFDCFSESAIRNAILGHIVNPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPDLADQLIHLYYFDCFSESAIRNAILGHIVNPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH*,ATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATGTTTCAAAGAAAACTAAAGGATGGTTTTATAGACATCACTATGAAAGCACACATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTGGTAGTAACAACATATTGGGGCCTGAATACAGGAGAAAGAGAATGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGAAAAAGGAAATATAGCACACAAGTTGACCCTGACCTAGCAGACCAACTAATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACATATAGTTAATCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGCTCTCTACAATACTTGGCACTAAAAGCATTAACAACACCAAAGAGAAGAAAGCCACCTTTACCTAGTGTTAGGAAACTGACAGAGGATAGATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAG -MK115490.1,vpr,5315,5609,5558,5850,forward,0.4038461538461544,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS*T,ATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAGAGCTTTTAGAGGAACTTAAGAATGAAGCGGTTAGACATTTTCCTAGGCCGTGGCTCCATGGCTTAGGACAACATATCTATGAAACTTATGGGGACACTTGGACAGGAGTGGAGGCCATAATAAGAACCCTGCAACAACTGCTGTTTATTCATTTCAGACTTGGGTGTCGACATAGCAGAATAGGCATTGTGCCACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACT -MK115490.1,tat_exon1,5586,5802,5830,6045,forward,0.29166666666666674,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ,ATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCACCCAGGAAGTCAGCCTAAAACTCCTTGTACTAACTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAAAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAG -MK115490.1,rev_exon1,5725,5803,5969,6045,forward,0.5769230769230769,MAGRSGDSDEELLKAVRLIKILYQSS,MAGRSGDSDEELLKAVRLIKILYQSS,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGT -MK115490.1,vpu,5817,6063,6061,6310,forward,0.6500000000000001,MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAEDSGNESEGDQEELSALMEMGHHAPGDVDDL,MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAEDSGNESEGDQEELSALMEMGHHAPGDVDDL*,ATGCAACCTCTGCACATAGCAGCAATAGTAGGATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGACCATAGTGTTAATAGAATATAGGAAAATATTAAGACAAAAAAGGATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAG -MK115490.1,env,5980,8521,6224,8795,forward,0.4941588785046729,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTESHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSKEGKMAEEMRNCSFNITTEIRNKMQKEYALFYKLDVVPIDDDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYGNKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSGTETFRPGGGDMKDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTESHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSKEGKMAEEMRNCSFNITTEIRNKMQKEYALFYKLDVVPIDDDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYGNKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSGTETFRPGGGDMKDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL*,ATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTGACAGTCTATTATGGGGTACCTGTATGGAAAGAAGCAAACACCACTCTATTTTGTGCATCGGATGCTAAAGCATATACCACAGAGTCACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGGATTGGAAAATGTGACAGAAAATTTTAATATGTGGAAAAATAACATGGTAGAACAGATGCATGAGGATGTAATCAATTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCACTAATCTGAATGTTACTAATACCAATAGCAGTAGTAAGGAGGGAAAGATGGCGGAAGAAATGAGAAACTGCTCTTTCAATATCACCACAGAAATAAGAAATAAGATGCAGAAGGAATATGCACTTTTTTATAAACTTGATGTAGTACCAATAGATGATGATAATACAAGTTATACATTGATAAATTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCTATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAGGATAAGAAGTTCAATGGATCAGGACCATGTAAAAGTGTCAGCACAGTACAATGTACACATGGAATTAAGCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTTTAGCAGAAGAAGAGGTAGTAATTAGATCTGAAAATTTCACGAACAATGCTAAAACCATAATAGTACATCTGAAGGAACCTATACAAATTAATTGTACAAGACCCAACAACAATACAATGAAAAGTATCCCTCTAGGACCAGGAAGAGCATTCTATGCAACAGGAGCCATAATAGGAGATATAAGACAAGCACATTGTAACCTTAGTAGAAAAGCATGGAATAATACTTTAAAACAGGTAGTTGAAAAATTAAAAGAACAATATGGGAATAAAACAATAATCTTTAATCACTCCTCAGGAGGGGACCCAGAAATTATAATGCATACTTTTAATTGTGGAGGGGAATTTTTCTATTGTAATACAACACAGCTGTTTAATAGTACTTGGAATAGTACTTGGACTGGGAATGCTACCGAATTAGATGGAAACATCACACTCCCATGCAGAATAAAACAGATTATAAACAGGTGGCAAGAAGTAGGAAAAGCAATGTATGCCCCTCCCATTAGAGGAAAAATTAGATGTTCATCAAATATTACAGGGTTACTATTAGTAAGAGATGGTGGTAACACGAGCGGGACTGAGACCTTCAGACCTGGAGGAGGAGATATGAAGGACAATTGGAGGAGTGAATTATATAAATATAAAGTAGTAAAAATTGAGCCATTAGGAGTAGCACCCACCAGGGCAAAGAGAAGAGTGGTGCAAAGAGAAAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAAGCCAGGCTGTTATTGTCTGGTATAGTGCAACAGCAAAACAATTTGCTGAGAGCTATTGAGGCGCAACAACATCTATTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTACAGGATCAACAGCGCCTGGGAATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCCTGGAATGCTAGTTGGAGTAATAAATCTCTGAATCAGATTTGGGATAACATGACCTGGATGGAGTGGGAAAGAGAAATTAACAATTACACAGACACAATATACACCTTAATTGAAAAGGCGCAGAACCAGCAGGAAAAGAATGAACAAGAATTATTGGAATTGGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAAATGGCTGTGGTACATAAAATTATTCATAATGATAGTAGGAGGATTGATAGGTTTAAGAATAGTTTTTGCTGTACTTGCTATAGTAAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGTCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAGCTTATTCAATGTCACAGCCATCGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAAGAGCTTGTAGAGCTCTTCTCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCATTGTTATAA -MK115490.1,tat_exon2,8102,8198,8376,8469,forward,0.28666666666666596,RPTSQPRGDPTGPKESKKKVEKETETDQFD,RPTSQPRGDPTGPKESKKKVEKETETDQFD**,AGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGA -MK115490.1,rev_exon2,8103,8388,8377,8653,forward,0.4285714285714286,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVSLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVSLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE*CY*,GACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGTCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAG -MK115490.1,nef,8522,9143,8796,9417,forward,0.5918699186991796,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTYKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPTSLHGVEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTYKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPTSLHGVEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC*H*,ATGGGGGGCAAGTGGTCAAAAAGTAGTGGGGGTGGATGGCCTGCTGTAAGGGAAAGAATGAGACGAACTGAGCCAGCAGCAGAAGGGGTGGGAGCAGTATCTCGAGACCTGGAAAGACATGGAGCAGTCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGCGCCTGGCTGGAAGCACAAGAAGAGGACAGTGAAGTGGGTTTTCCAGTCAGACCTCAGGTGCCTTTAAGACCAATGACTTACAAAGGAGCTCTCGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCCCAAAAAAGACAAGATATCCTTGACCTGTGGGTCTACAACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGACCAGATATCCACTGACCTTTGGGTGGTGTTTCAAGCTAGTACCAGTGGAGCCAGAAGAGGCCAATCAAGGAGAGAACAACTGCTTGTTACACCCTACGAGCCTGCATGGGGTGGAGGACCCGGAAAAAGAAGTATTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCACATGGCCCGAGAGAAGCATCCGGAGTACTACAAAGACTGCTGACATTGA -MK115576.1,gag,468,1974,789,2292,forward,0.2571999999999999,MGARASILSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWTTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSANVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE,MGARASILSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWTTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSANVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE*R*,ATGGGTGCGAGAGCGTCAATATTAAGCGGGGGAAAATTAGATGCATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATTTAGTATGGGCAAGCAGGGAGCTAGAACGATTTGCCGTTAACCCTGGCCTGTTAGAAACATCAGAGGGATGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATTTAATGCAGTAGCAGTCCTCTATTGTGTACATCAAAGGATACAGGTACAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGTAGCAGCAGCTGACACTGACACAGGAAACAGCAGCCAAAATTACCCCATAGTGCAGAACCTCCAGGGGCAAATGGTACATCAGCCCCTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAAAAGGCCTTCAGCCCAGAAGTCATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGACGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCTTGGGATTAAATAAAATAGTAAGGATGTATAGCCCTACCAGTATTCTGGATATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAGAACTTTAAGAGCTGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATTCGAATCCAGATTGTAAGACTATTTTAAAAGCATTAGGACCAGCAGCAACACTAGAGGAAATGATGACAGCATGTCAAGGAGTGGGGGGACCAGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAAATTCAGCTAATGTAATGATGCAGAGAGGCAATTTTAGAAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACATCAAATGAAAGACTGTACAGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAG -MK115576.1,pol,1760,4772,2084,5096,forward,0.14755732801595212,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSTGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSTGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAGGGGGGCAATTTAAAGAAGCTTTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACCCATAGAAATCTGTGGACACAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGCTTGGTTGTACCTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTCAATAAGAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAATTCCCTTAGATAAAGAATTCAGGAAGTATACTGCATTTACCATACCTAGTACAAATAATGAGACACCAGGGATTAGGTATGAGTACAATGTGCTGCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGCAAAATCCAGATATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAACTGAGACAACATCTGTTAAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAGTGGACAGTACAGCCTATAATACTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTACGCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAGGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTTTAAGAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGCAATGGACAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTACAAAAGATAGCCACAGAAAGCATAGTAATATGGGGAAAAACTCCTAAATTTAGACTACCTATACAAAAAGAAACATGGGAGACATGGTGGGCAGAGTACTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAATTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACTAAATTAGGCAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAGGTTATCTCCCTAACGGACACAACAAATCAAAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATCAGAAGTAAACATAGTAACAGACTCACAATATACATTAGGAATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAATCAGATAATAGAGCAGTTAATAAAAAAGGAAAAAGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGACAAACTAGTCAGTACTGGAGTCAGGAGAGTACTATTTCTAGATGGAATAGATAAGGCCCAAGAAGACCATGAGAAATATCACAGTAATTGGAGAGCAATGGCTGGTGATTTTAATATACCCCCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCAAAAAGGAGAGGCCATGCATGGACAAGTAGATTGTAGTCCAGGAATATGGCAACTAGATTGTACACATCTAGAAGGGAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTCTCCTGAAACTAGCAGGGAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTAATGTGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCCATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTATAGTGCAGGGGAAAGAATAGTAGATATAATAGCAACAGACCTACAAACTAAAGAATTACAGAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGGAGAAAAGCAAAAATCATTAGGGATTATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG -MK115576.1,vif,4716,5295,5040,5619,forward,0.35416666666666674,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH*,ATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATGTTTCAAAGAAAACTAAAGGATGGTTTTATAGACATCACTATGAAAGCACTCATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTGGTAGTAACAACATATTGGGGCCTGAATACAGGAGAAAGAGAATGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGAAAAAGGAAATATAGCACACAAGTTGACCCTAACCTAGCAGACCAACTAATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACATATAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGCTCTCTACAATACTTGGCACTAAAAGCATTAACAACACCAAAGAGAAGAAAGCCACCTTTACCTAGTGTTAGGAAACTGACAGAGGATAGATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAG -MK115576.1,vpr,5234,5528,5558,5850,forward,0.4038461538461544,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS*T,ATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAGAGCTTTTAGAGGAACTTAAGAATGAAGCGGTTAGACATTTTCCTAGGCCGTGGCTCCATGGCTTAGGACAACATATCTATGAAACTTATGGGGACACTTGGACAGGAGTGGAGGCCATAATAAGAACCCTGCAACAACTGCTGTTTATTCATTTCAGACTTGGGTGTCGACATAGCAGAATAGGCATTGTGCCACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACT -MK115576.1,tat_exon1,5505,5721,5830,6045,forward,0.29166666666666674,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ,ATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCACCCAGGAAGTCAGCCTAAAACTCCTTGTACTAACTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAAAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAG -MK115576.1,rev_exon1,5644,5722,5969,6045,forward,0.5769230769230769,MAGRSGDSDEELLKAVRLIKILYQSS,MAGRSGDSDEELLKAVRLIKILYQSS,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGT -MK115576.1,vpu,5736,5982,6061,6310,forward,0.6865853658536587,MQPLHIAAIVGLIVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAEDSGNESEGDQEELSALMEMGHHAPGDVDDL,MQPLHIAAIVGLIVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAEDSGNESEGDQEELSALMEMGHHAPGDVDDL*,ATGCAACCTCTGCACATAGCAGCAATAGTAGGATTAATAGTAGCAGCAATAATAGCAATAGTTGTGTGGACCATAGTGTTAATAGAATATAGGAAAATATTAAGACAAAAAAGGATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAG -MK115576.1,env,5899,8440,6224,8795,forward,0.49018691588785046,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTPEAHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRNKMQKEYALFYKLDVVPIDNDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYENKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSETETFRPGGGDMKDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTPEAHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRNKMQKEYALFYKLDVVPIDNDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYENKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSETETFRPGGGDMKDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL*,ATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTGACAGTCTATTATGGGGTACCTGTATGGAAAGAAGCAAACACCACTCTATTTTGTGCATCGGATGCTAAAGCATATACCCCAGAGGCACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGGATTGGAAAATGTGACAGAAAATTTTAACATGTGGAAAAATAACATGGTAGAACAGATGCATGAGGATGTAATCAATTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCACTAATCTGAATGTTACTAATACCAATAGCAGTAGTGAGGAGGGAAAGATGGCGGAAGAAATGAGAAACTGCTCTTTCAATATCACCACAAAAATAAGAAATAAGATGCAGAAGGAATATGCACTTTTTTATAAACTTGATGTAGTACCAATAGATAATGATAATACAAGTTATACATTGATAAATTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCTATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAGGATAAGAAGTTCAATGGATCAGGACCATGTAAAAATGTCAGCACAGTACAATGTACACATGGAATTAAGCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTTTAGCAGAAGAAGAGGTAGTAATTAGATCTGAAAATTTCACGAACAATGCTAAAACCATAATAGTACATCTGAAGGAACCTATACAAATTAATTGTACAAGACCCAACAACAATACAATGAAAAGTATCCCTCTAGGACCAGGAAGAGCATTCTATGCAACAGGAGCCATAATAGGAGATATAAGACAAGCACATTGTAACCTTAGTAGAAAAGCATGGAATAATACTTTAAAACAGGTAGTTGAAAAATTAAAAGAACAATATGAGAATAAAACAATAATCTTTAATCACTCCTCAGGAGGGGACCCAGAAATTATAATGCATACTTTTAATTGTGGAGGGGAATTTTTCTATTGTAATACAACACAGCTGTTTAATAGTACTTGGAATAGTACTTGGACTGGGAATGCTACCGAATTAGATGGAAACATCACACTCCCATGCAGAATAAAACAGATTATAAACAGGTGGCAAGAAGTAGGAAAAGCAATGTATGCCCCTCCCATTAGAGGAAAAATTAGATGTTCATCAAATATTACAGGGTTACTATTAGTAAGAGATGGTGGTAACACGAGCGAGACTGAGACCTTCAGACCTGGAGGAGGAGATATGAAGGACAATTGGAGGAGTGAATTATATAAATATAAAGTAGTAAAAATTGAGCCATTAGGAGTAGCACCCACCAGGGCAAAGAGAAGAGTGGTGCAAAGAGAAAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAAGCCAGGCTGTTATTGTCTGGTATAGTGCAACAGCAAAACAATTTGCTGAGAGCTATTGAGGCGCAACAACATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTACAGGATCAACAGCGCCTGGGAATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCCTGGAATGCTAGTTGGAGTAATAAATCTCTGAATCAGATTTGGGATAACATGACCTGGATGGAGTGGGAAAGAGAAATTAACAATTACACAGACACAATATACACCTTAATTGAAAAGGCGCAGAACCAGCAGGAAAAGAATGAACAAGAATTATTGGAATTGGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAAATGGCTGTGGTACATAAAATTATTCATAATGATAGTAGGAGGATTGATAGGTTTAAGAATAGTTTTTGCTGTACTTGCTATAGTAAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGCCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAGCTTATTCAATGTCACAGCCATCGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAAGAGCTTGTAGAGCTCTTCTCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCATTGTTATAA -MK115576.1,tat_exon2,8021,8117,8376,8469,forward,0.28666666666666596,RPTSQPRGDPTGPKESKKKVEKETETDQFD,RPTSQPRGDPTGPKESKKKVEKETETDQFD**,AGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGA -MK115576.1,rev_exon2,8022,8307,8377,8653,forward,0.39560439560439553,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVPLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVPLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE*CY*,GACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGCCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAG -MK115576.1,nef,8441,9062,8796,9417,forward,0.6162601626016186,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPTSLHGMEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPTSLHGMEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC*H*,ATGGGGGGCAAGTGGTCAAAAAGTAGTGGGGGTGGATGGCCTGCTGTAAGGGAAAGAATGAGACGAACTGAGCCAGCAGCAGAAGGGGTGGGAGCAGTATCTCGAGACCTGGAAAGACATGGAGCAGTCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGCGCCTGGCTGGAAGCACAAGAAGAGGACAGTGAAGTGGGTTTTCCAGTCAGACCTCAGGTGCCTTTAAGACCAATGACTTTCAAAGGAGCTCTCGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCCCAAAAAAGACAAGATATCCTTGACCTGTGGGTCTACAACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGACCAGATATCCACTGACCTTTGGGTGGTGTTTCAAGCTAGTACCAGTGGAGCCAGAAGAGGCCAATCAAGGAGAGAACAACTGCTTGTTACACCCTACGAGCCTGCATGGGATGGAGGACCCGGAAAAAGAAGTATTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCACATGGCCCGAGAGAAGCATCCGGAGTACTACAAAGACTGCTGACATTGA -OQ092466,gag,825,2361,789,2292,forward,0.16679999999999984,MGARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPSLLETAEGCRQILGQLQPSLQTGSEELKSLYNTLATLYCVHQRIEVKDTKEALEKIEEEQNKSKKKAQQAAADTGNSSQVRHTGNSSQVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTSNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSHVTNSSAIMMQRGNFRNQRKAVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPPEEIFRFVEETTTPSQKQEPIDKELYPPLASLKSLFGNDPSSQ,MGARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPSLLETAEGCRQILGQLQPSLQTGSEELKSLYNTLATLYCVHQRIEVKDTKEALEKIEEEQNKSKKKAQQAAADTGNSSQVRHTGNSSQVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTSNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSHVTNSSAIMMQRGNFRNQRKAVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPPEEIFRFVEETTTPSQKQEPIDKELYPPLASLKSLFGNDPSSQ*,ATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAGAATTGGATAGATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAAATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTTAACCCTAGCCTGTTAGAAACAGCAGAAGGCTGTAGACAAATATTGGGACAGTTACAACCGTCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATATAATACATTAGCAACCCTCTATTGTGTGCATCAAAGGATAGAGGTAAAAGACACCAAGGAAGCCTTAGAGAAGATAGAGGAAGAGCAAAACAAAAGCAAGAAAAAGGCACAGCAAGCAGCAGCTGACACAGGAAACAGCAGCCAGGTTAGACACACAGGAAACAGCAGCCAGGTCAGCCAAAATTACCCTATAGTACAGAACCTTCAGGGGCAAATGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAATACCATGCTAAATACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATCAATGAGGAAGCTGCAGAATGGGATAGACTACATCCAGTGCATGCAGGGCCCATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGATGACAAGTAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGGATGTATAGTCCTACCAGCATTCTGGACATAAGACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAAAACTCTAAGAGCCGAGCAAGCTACACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAACCCAGATTGTAAGACTATCTTAAAAGCATTGGGACCAGCAGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTAGGGGGACCCGGACATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCACGTAACAAATTCAAGTGCCATAATGATGCAGAGGGGCAATTTTAGAAACCAAAGAAAGGCTGTTAAGTGTTTCAATTGTGGCAAAGAGGGGCATATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGATTGTACTGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAATTTTCTCCAGAGCAGACCAGAGCCAACAGCCCCACCACCAGAAGAGATCTTCAGGTTTGTGGAAGAGACAACAACTCCCTCTCAGAAACAGGAGCCAATAGACAAGGAACTGTATCCTCCTTTAGCTTCCCTCAAATCACTCTTTGGCAACGACCCCTCGTCACAATAA -OQ092466,pol,2147,5165,2084,5096,forward,0.14356929212362912,FFRENLAFPQRKAREFSPEQTRANSPTTRRDLQVCGRDNNSLSETGANRQGTVSSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMNLPGRWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPYRTRNPEMVIYQYMDDLYVGSDLEIGQHRAKIEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPNKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTEVVPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGEGQWTFQIYQEPFKNLKTGKYARARGAHTNDVKQLTEAVQKIATEGIVIWGKIPKFRLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKKGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIEKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQIIKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED,FFRENLAFPQRKAREFSPEQTRANSPTTRRDLQVCGRDNNSLSETGANRQGTVSSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMNLPGRWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPYRTRNPEMVIYQYMDDLYVGSDLEIGQHRAKIEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPNKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTEVVPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGEGQWTFQIYQEPFKNLKTGKYARARGAHTNDVKQLTEAVQKIATEGIVIWGKIPKFRLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKKGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIEKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQIIKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAATTTTCTCCAGAGCAGACCAGAGCCAACAGCCCCACCACCAGAAGAGATCTTCAGGTTTGTGGAAGAGACAACAACTCCCTCTCAGAAACAGGAGCCAATAGACAAGGAACTGTATCCTCCTTTAGCTTCCCTCAAATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAGGGGGGCAGCTAAAGGAAGCTCTATTAGATACAGGGGCAGATGATACAGTATTAGAAGACATGAATTTACCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACCCATAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGATTGGTTGCACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAGGACTTCTGGGAAGTTCAATTAGGAATACCACATCCCGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTATTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATAAAGACTTCAGGAAGTATACTGCATTTACCATACCTAGCATAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGTATGACAAAAATCTTAGAGCCTTATAGAACACGAAATCCAGAAATGGTTATCTATCAATACATGGATGATTTATATGTAGGATCTGACTTAGAAATAGGGCAACATAGAGCAAAAATAGAGGAACTGAGACAACATCTGTTGAAGTGGGGATTTACTACCCCAGACAAAAAACATCAAAAAGAACCTCCATTCCTTTGGATGGGGTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAAACAAAGACAGCTGGACTGTCAATGACATACAGAAACTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTACCCAGGGATTAAGGTAAAGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAAGTAGTACCGCTAACAGAAGAAGCAGAGTTAGAACTGGCAGAAAACAGGGAGATTCTAAAAGAACCAGTACATGGGGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAGCAGGGGGAAGGACAATGGACATTTCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAGCGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAGCCACAGAAGGCATAGTAATATGGGGAAAAATTCCTAAATTTAGACTACCCATACAAAAGGAAACATGGGAAACATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAACACCCCTCCCTTAGTAAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAACAGGGAAACTAAAAAAGGAAAAGCAGGATATGTTACTGACAGAGGAAGACAAAAAGTTGTCTCCCTAACTGATACAACAAATCAGAAGACTGAGTTACAAGCAATTCATCTAGCTTTGCAGGATTCAGGATTAGAAGTAAACATAGTAACAGACTCACAATACGCATTGGGAATCATTCAAGCACAACCAGATAAAAGTGAATCAGAGTTAGTCAGTCAAATAATAGAACAGTTGATAAAAAAGGAAAAGGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTTAGTGCTGGAATCAGGAAAGTATTATTTTTAGATGGAATAGAGAAGGCCCAAGATGAACATGAGAAATATCACAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAGTGTCAGCTAAAAGGAGAAGCCATACATGGACAGGTAGACTGTAGTCCAGGAATATGGCAATTAGATTGTACACATTTAGAAGGAAAAATTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTCATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTCTCTTAAAATTAGCAGGAAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTAATACGGTTAAGGCCGCCTGTTGGTGGGCGGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACAGACATCCAAACCAAAGAACTACAAAAACAAATTATAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTTATACAAGATAATAGTGACATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG -OQ092466,vif,5109,5688,5040,5619,forward,0.203125,MENRWQVMIVWQVDRMRIRTWNSLVKHHMYVSRKAKGWFYRHHFESNHPKISSEVHIPLEDARLVITTYWGLHTGERDWHLGQGVSIEWRKKRYSTQVDPDLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALAALITPKKRKPPLPSVKKLTEDRWNKPQKTKGHRGSHTMNGH,MENRWQVMIVWQVDRMRIRTWNSLVKHHMYVSRKAKGWFYRHHFESNHPKISSEVHIPLEDARLVITTYWGLHTGERDWHLGQGVSIEWRKKRYSTQVDPDLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALAALITPKKRKPPLPSVKKLTEDRWNKPQKTKGHRGSHTMNGH*,ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGTATGTTTCAAGGAAAGCTAAGGGATGGTTTTATAGACATCACTTTGAAAGCAATCATCCAAAAATAAGTTCAGAAGTACACATCCCACTGGAGGATGCTAGACTGGTAATAACAACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCATTTGGGTCAGGGGGTCTCCATAGAATGGAGGAAAAAGAGATATAGCACACAAGTAGACCCTGACCTAGCAGACCAACTAATTCATCTGTACTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACACATAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGATCTCTACAGTACTTGGCACTAGCAGCATTAATAACACCAAAAAAGAGAAAGCCACCCTTGCCTAGTGTTAAGAAGCTAACAGAAGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAG -OQ092466,vpr,5627,5921,5558,5850,forward,0.3653846153846132,MEQAPEDQGPQREPYNEWTLELLEELKSEAVRHFPRIWLHSLGQYIYETYGDTWAGVEAIIRILQQLLFIHFRIGCQHSRIGIIRQRRARNGASRS,MEQAPEDQGPQREPYNEWTLELLEELKSEAVRHFPRIWLHSLGQYIYETYGDTWAGVEAIIRILQQLLFIHFRIGCQHSRIGIIRQRRARNGASRS*A,ATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAGAGCTTTTAGAGGAGCTTAAGAGTGAAGCTGTTAGACATTTTCCTAGGATATGGCTCCATAGCTTAGGGCAATATATCTATGAAACTTATGGAGATACTTGGGCAGGGGTGGAAGCCATAATAAGAATTCTGCAACAACTGTTGTTTATTCATTTCAGAATTGGGTGTCAACATAGCAGAATAGGCATTATTCGACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGGCT -OQ092466,tat_exon1,5898,6114,5830,6045,forward,0.45833333333333326,MEPVDPRLEPWKHPGSQPRTACTTCYCKKCCFHCQVCFTTKGLGISYGRKKRRQRRRAPQDSQTDQGPLPKQ,MEPVDPRLEPWKHPGSQPRTACTTCYCKKCCFHCQVCFTTKGLGISYGRKKRRQRRRAPQDSQTDQGPLPKQ,ATGGAGCCAGTAGATCCTAGGCTAGAGCCCTGGAAGCATCCAGGAAGTCAGCCTAGGACTGCTTGTACCACTTGTTATTGTAAAAAATGCTGCTTTCATTGCCAAGTTTGTTTCACAACAAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGACGAGCTCCTCAAGACAGTCAGACTGATCAAGGTCCTCTACCAAAGCAG -OQ092466,rev_exon1,6037,6115,5969,6045,forward,0.5769230769230769,MAGRSGDSDDELLKTVRLIKVLYQSS,MAGRSGDSDDELLKTVRLIKVLYQSS,ATGGCAGGAAGAAGCGGAGACAGCGACGACGAGCTCCTCAAGACAGTCAGACTGATCAAGGTCCTCTACCAAAGCAGT -OQ092466,vpu,6129,6375,6061,6310,forward,0.6097560975609757,MQPLTILAIVALVVAAILAIVVWSIVLIEYRKILRQRKIDRLIDRIRERAEDSGNESEGDQEELSALVERGHLAPWNVDDL,MQPLTILAIVALVVAAILAIVVWSIVLIEYRKILRQRKIDRLIDRIRERAEDSGNESEGDQEELSALVERGHLAPWNVDDL*,ATGCAACCTTTAACAATATTAGCAATAGTAGCACTAGTAGTAGCAGCAATACTAGCAATAGTTGTGTGGTCCATAGTACTCATAGAATATAGGAAAATATTAAGACAAAGGAAAATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAAAGTGAGGGGGATCAGGAAGAATTATCAGCACTGGTGGAGAGGGGGCATCTTGCTCCTTGGAATGTTGATGATCTGTAA -OQ092466,env,6292,8902,6224,8795,forward,0.5255841121495328,MKVRGIRKNYQHWWRGGILLLGMLMICNATEQQLWVTVYYGVPVWKEANTTLFCASDAKAYSTEVHNVWATHACVPTDPNPQEVVLKNVTENFNMWENNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTNTTRSSGNTTNEMKNCSFYTETDIRDKKRKEYALFYELDIVPIDEDNKNKSNNISYSRLISCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEDEVVIKSSNFTNNAKTIIVQLNETVKINCTRPNNNTRKSIPIGPGRAFYATGDIIGDIRQAHCNISRANWTNTLKQIAEKLGKQFEENKTIVFNPSSGGDPEVVMHSFNCRGEFFYCNSTPLFNSTWKETNGIWTRIGESNDSATITLNDSDTITLQCKIRQIINLWQEVGKAMYAPPIKGQISCLSNITGLLLVRDGGNNTNGTEIFRPVGGEMRDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRATLGALFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICTTTVPWNTSWSNKSLEKIWNNMTWMEWEREIDNYTSLIYTLLEESQNQQEKNEKELLELDTWASLWNWFDITNWLWYIKIFIMIIGGLVGLRIVFTVLSIVNRVRQGYSPLSFQIHPPAPRGPDRPEGIEGEGGERDRDRSGPLVNGFLALFWVDLRSLCLFSYHRLRDLLLIVARIVELLGRRGWEALKYGWSLLQYWSQELKNSAVSLLNATAIAVAEGTDRVIEILQRACRAILHIPTRIRQGLERALL,MKVRGIRKNYQHWWRGGILLLGMLMICNATEQQLWVTVYYGVPVWKEANTTLFCASDAKAYSTEVHNVWATHACVPTDPNPQEVVLKNVTENFNMWENNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTNTTRSSGNTTNEMKNCSFYTETDIRDKKRKEYALFYELDIVPIDEDNKNKSNNISYSRLISCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEDEVVIKSSNFTNNAKTIIVQLNETVKINCTRPNNNTRKSIPIGPGRAFYATGDIIGDIRQAHCNISRANWTNTLKQIAEKLGKQFEENKTIVFNPSSGGDPEVVMHSFNCRGEFFYCNSTPLFNSTWKETNGIWTRIGESNDSATITLNDSDTITLQCKIRQIINLWQEVGKAMYAPPIKGQISCLSNITGLLLVRDGGNNTNGTEIFRPVGGEMRDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRATLGALFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICTTTVPWNTSWSNKSLEKIWNNMTWMEWEREIDNYTSLIYTLLEESQNQQEKNEKELLELDTWASLWNWFDITNWLWYIKIFIMIIGGLVGLRIVFTVLSIVNRVRQGYSPLSFQIHPPAPRGPDRPEGIEGEGGERDRDRSGPLVNGFLALFWVDLRSLCLFSYHRLRDLLLIVARIVELLGRRGWEALKYGWSLLQYWSQELKNSAVSLLNATAIAVAEGTDRVIEILQRACRAILHIPTRIRQGLERALL*DGWQMVKK*,ATGAAAGTGAGGGGGATCAGGAAGAATTATCAGCACTGGTGGAGAGGGGGCATCTTGCTCCTTGGAATGTTGATGATCTGTAATGCTACAGAACAACAATTGTGGGTTACAGTCTATTATGGGGTACCTGTGTGGAAAGAAGCAAACACCACTCTATTTTGTGCATCAGATGCTAAAGCATATAGTACAGAGGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTGGTATTAAAAAATGTGACAGAAAATTTTAATATGTGGGAAAATAACATGGTAGAACAGATGCATGAAGATATAATCAGTTTATGGGATCAAAGCTTAAAGCCATGTGTAAAGTTAACTCCACTCTGTGTTACTCTAAATTGCACTAATACCACTAGGAGTAGTGGAAATACTACCAATGAAATGAAAAACTGCTCTTTCTATACCGAAACAGACATAAGAGATAAGAAGAGAAAGGAATATGCACTTTTTTATGAACTTGATATAGTACCCATAGATGAGGATAATAAGAATAAGAGTAATAATATTAGCTATTCTAGGTTAATAAGTTGCAACACCTCAGTTATTACACAAGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAATGATAAGAAATTCAATGGAACAGGGCCATGTACAAATGTCAGCACAGTGCAATGTACACATGGTATTAGGCCAGTAGTATCAACTCAACTGCTGTTAAATGGCAGTCTAGCAGAAGACGAGGTAGTAATTAAATCTAGCAATTTCACGAACAATGCTAAAACCATAATAGTACAGCTAAATGAAACTGTAAAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATACCTATAGGACCAGGGAGAGCATTTTATGCAACAGGAGACATAATAGGAGACATAAGACAAGCACATTGTAACATCTCTAGAGCAAACTGGACAAACACTTTAAAACAGATAGCTGAAAAATTAGGAAAACAATTTGAGGAAAATAAAACAATAGTCTTTAATCCCTCCTCAGGAGGGGACCCAGAGGTTGTAATGCACAGTTTTAATTGTAGAGGGGAATTTTTCTACTGTAATTCAACACCACTGTTTAATAGTACTTGGAAGGAGACTAATGGGATTTGGACTCGTATTGGAGAGTCAAATGATAGTGCTACTATCACACTAAATGATAGTGATACTATCACACTCCAATGTAAAATAAGGCAAATTATAAACTTGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCATCAAAGGACAAATTAGCTGTTTATCAAACATTACAGGGCTGCTATTAGTAAGAGATGGTGGCAATAACACGAACGGGACCGAGATCTTCAGACCTGTAGGAGGAGAAATGAGGGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAAAATTGAACCATTAGGAGTAGCACCCACCAGGGCAAAGAGAAGAGTGGTGCAGAGAGAGAAAAGAGCGACATTGGGAGCTCTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAGGCCAGACTATTATTGTCTGGTATAGTGCAACAGCAGAACAATTTGCTGAGAGCTATTGAGGCGCAACAGCATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTAAGGGATCAACAGCTCCTGGGGATTTGGGGTTGCTCTGGAAAACTCATCTGCACCACTACTGTGCCTTGGAATACTAGTTGGAGTAATAAATCTCTGGAAAAAATTTGGAATAATATGACCTGGATGGAGTGGGAAAGAGAAATTGACAATTACACAAGCTTAATATACACCTTACTTGAAGAATCGCAGAACCAGCAAGAAAAAAATGAAAAAGAATTATTGGAATTAGATACATGGGCAAGTTTGTGGAATTGGTTTGACATAACAAACTGGCTGTGGTATATAAAAATATTCATAATGATAATAGGAGGCTTGGTAGGTTTAAGAATAGTTTTTACTGTACTTTCTATAGTGAATAGAGTTAGGCAGGGATACTCACCATTATCGTTCCAGATCCACCCCCCAGCTCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGGAGAAGGTGGAGAGAGAGACAGAGACAGATCCGGTCCATTAGTGAACGGATTCTTAGCACTTTTCTGGGTCGACCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAGCGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCTCTCAAATACGGGTGGAGTCTCCTACAATATTGGAGCCAGGAACTAAAGAATAGTGCTGTCAGCTTGCTCAACGCCACAGCCATAGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAATATTACAAAGAGCTTGTAGAGCTATTCTCCATATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCTTTGCTATAAGATGGGTGGCAAATGGTCAAAAAGTAA -OQ092466,tat_exon2,8456,8552,8376,8469,forward,0.886666666666666,RSTPQLRGDPTGPKESKEKVERETETDPVH,RSTPQLRGDPTGPKESKEKVERETETDPVH**,AGATCCACCCCCCAGCTCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGGAGAAGGTGGAGAGAGAGACAGAGACAGATCCGGTCCATTAGTGA -OQ092466,rev_exon2,8457,8733,8377,8653,forward,0.3626373626373627,DPPPSSEGTRQARRNRRRRWRERQRQIRSISERILSTFLGRPAEPVPLQLPPLERLTLDCSEDCGTSGTQGVGSSQIRVESPTILEPGTKE,DPPPSSEGTRQARRNRRRRWRERQRQIRSISERILSTFLGRPAEPVPLQLPPLERLTLDCSEDCGTSGTQGVGSSQIRVESPTILEPGTKE*,GATCCACCCCCCAGCTCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGGAGAAGGTGGAGAGAGAGACAGAGACAGATCCGGTCCATTAGTGAACGGATTCTTAGCACTTTTCTGGGTCGACCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAGCGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCTCTCAAATACGGGTGGAGTCTCCTACAATATTGGAGCCAGGAACTAAAGAATAG -OQ092466,nef,8876,9509,8796,9417,forward,0.5040650406503988,MGGKWSKSKLFGWPAVRERMRRAEPAAEPAADGVGAASRDLERHGAITSSNTPTTNAACAWLEAQEEEEVGFPVRPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIHSPKRQEILDLWVYHTQGFFPDWDNYTPGPGIRYPLTFGWCFKLVPVEPDKVEEANEGENNCLLHPMSQHGMEDPEREVLEWRFDSRLAFRHVARELHPEYYKDC,MGGKWSKSKLFGWPAVRERMRRAEPAAEPAADGVGAASRDLERHGAITSSNTPTTNAACAWLEAQEEEEVGFPVRPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIHSPKRQEILDLWVYHTQGFFPDWDNYTPGPGIRYPLTFGWCFKLVPVEPDKVEEANEGENNCLLHPMSQHGMEDPEREVLEWRFDSRLAFRHVARELHPEYYKDC*,ATGGGTGGCAAATGGTCAAAAAGTAAGCTATTTGGATGGCCTGCTGTAAGGGAAAGAATGAGAAGAGCTGAGCCAGCAGCAGAGCCAGCAGCAGATGGGGTGGGAGCAGCATCTCGAGACCTGGAAAGACACGGAGCAATCACAAGTAGCAATACACCAACTACCAATGCTGCTTGTGCCTGGCTAGAAGCACAAGAAGAGGAGGAGGTGGGTTTTCCAGTCAGACCTCAGGTACCTTTAAGACCAATGACTTACAAAGCGGCTGTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCACTCCCCAAAAAGACAAGAGATCCTTGATCTGTGGGTCTATCATACACAAGGTTTCTTCCCTGATTGGGATAACTACACACCAGGGCCAGGGATCAGATATCCACTGACCTTTGGATGGTGCTTCAAGTTAGTACCAGTGGAGCCAGATAAGGTAGAAGAGGCCAATGAAGGAGAGAATAACTGCTTGTTACACCCTATGAGCCAGCATGGGATGGAGGACCCGGAGAGAGAAGTGTTAGAGTGGAGGTTTGACAGCCGCCTGGCATTTCGTCACGTGGCCCGAGAGCTGCATCCGGAGTACTACAAGGACTGCTGA -OQ092463,gag,801,2313,140,1643,forward,0.20240000000000014,MGARASVLSGGELDRWERIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSKGCRQILEQLQPSLQTGSEELKSLYNTVATLYCVHQKIDVKDTKEALDKIEEEQNKSKKKTQQAAADTGNNSQTSQASQNYPIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKESFRDYVDRFYKTLRAEQCTQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTTPGTIMMQRGNFRNQRKNVKCFNCGKEGHIAKNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETTTPSQKQEPVDKELYPLASLRSLFGNDPSSQ,MGARASVLSGGELDRWERIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSKGCRQILEQLQPSLQTGSEELKSLYNTVATLYCVHQKIDVKDTKEALDKIEEEQNKSKKKTQQAAADTGNNSQTSQASQNYPIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKESFRDYVDRFYKTLRAEQCTQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTTPGTIMMQRGNFRNQRKNVKCFNCGKEGHIAKNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETTTPSQKQEPVDKELYPLASLRSLFGNDPSSQ*,ATGGGTGCGAGAGCGTCGGTATTAAGCGGGGGAGAATTAGATAGATGGGAAAGAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAAATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAGCGGTTCGCAGTTAATCCTGGCCTGTTAGAAACATCAAAAGGCTGTAGACAAATATTGGAACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATATAATACAGTAGCAACCCTCTATTGTGTGCATCAAAAGATAGATGTAAAAGACACCAAGGAAGCTTTAGATAAGATAGAGGAAGAGCAAAACAAAAGTAAGAAAAAAACACAGCAAGCAGCAGCTGACACAGGAAACAACAGCCAGACCAGCCAGGCCAGCCAAAATTACCCTATAGTGCAGAACATCCAGGGGCAAATGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGGATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCCTGGGACTAAATAAAATAGTAAGGATGTATAGCCCTACCAGCATTCTGGACATAAGACAAGGACCAAAGGAATCCTTTAGAGACTATGTAGACCGGTTCTATAAAACTCTAAGAGCCGAACAATGTACACAGGAGGTAAAAAATTGGATGACAGAAACATTATTGGTCCAAAATGCAAACCCAGATTGCAAGACTATTTTAAAAGCATTAGGACCAGCAGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCTGGCCATAAAGCAAGAGTTTTGGCAGAAGCAATGAGCCAAGTAACAACTCCAGGTACCATAATGATGCAGAGAGGCAATTTCAGGAACCAGAGAAAGAATGTTAAGTGTTTCAACTGTGGCAAAGAAGGGCATATAGCTAAAAATTGCAGGGCCCCTAGAAAAAGGGGCTGTTGGAAATGTGGAAAAGAAGGACACCAAATGAAAGATTGCACTGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGGAGGCCAGGGAATTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAGGAGACAACAACTCCCTCTCAGAAGCAGGAGCCGGTAGACAAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAA -OQ092463,pol,2105,5117,1435,4447,forward,0.10767696909272173,FFRENLAFPQGEAREFSSEQTRANSPTRRELQVWGGDNNSLSEAGAGRQGTVSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMTLPGRWKPKMIGGIGGFIKVRQYDQILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIDELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTEVVPLTREAELELAENREILKEPVHGVYYDPTKDLIAELQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQRETWDTWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKDKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIDKAQDDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGSNFISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVYIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED,FFRENLAFPQGEAREFSSEQTRANSPTRRELQVWGGDNNSLSEAGAGRQGTVSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMTLPGRWKPKMIGGIGGFIKVRQYDQILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIDELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTEVVPLTREAELELAENREILKEPVHGVYYDPTKDLIAELQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQRETWDTWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKDKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIDKAQDDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGSNFISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVYIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGGAGGCCAGGGAATTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAGGAGACAACAACTCCCTCTCAGAAGCAGGAGCCGGTAGACAAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGACATGACTTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACTTGTAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTAACTCAAATTGGTTGCACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATCTGTACAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATATAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCCGCAGGGTTAAAAAAGAAAAAGTCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATAAAGACTTCAGGAAGTATACTGCATTTACCATACCTAGTATAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGACATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGATGAATTAAGACAACATCTGTTGAAGTGGGGATTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGATATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGTTGCCAGAAAAGGACAGTTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTGAATTGGGCAAGTCAGATTTACCCAGGGATTAAAGTAAAGCAATTATGTAAACTCCTTAGGGGAACCAAGGCACTAACAGAAGTAGTACCACTAACAAGAGAAGCAGAGCTAGAGCTGGCAGAAAACAGGGAAATTCTAAAAGAACCAGTACATGGAGTGTATTATGACCCAACAAAAGACTTAATAGCAGAGTTACAGAAGCAGGGGCAAGGCCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGGAAATATGCAAGAATGAGAGGTGCCCACACTAATGATGTAAAGCAACTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAGTTTAAACTACCCATACAAAGAGAAACATGGGACACATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAATTTGTCAATACCCCTCCCTTAGTAAAATTATGGTACCAGTTAGAGAAAGAACCTATAGTAGGAGCAGAAACTTTCTATGTAGATGGTGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAACAGAGGAAGACAAAAAGTTGTCTCCCTAACTGATACAACAAATCAGAAGACTGAGTTACAAGCAATTCATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATAAAAGTGAATCAGAGTTAGTTAATCAAATAATAGAACAGTTAATAAAAAAGGACAAGGTATACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTGCTGGAATCAGGAAAGTACTATTTTTAGATGGAATAGATAAGGCCCAAGATGACCATGAGAAATATCACAGTAATTGGAGGGCAATGGCTAGTGATTTTAACCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGCCAGTTAAAAGGGGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAACTGGATTGTACACACTTAGAAGGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGGTATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTATCTTAAAATTAGCAGGAAGATGGCCAGTAACAACAATACATACAGACAATGGCAGCAATTTCATCAGTACTACAGTTAAGGCCGCCTGCTGGTGGGCGGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATCATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATACATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATTACAAAACTTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGACATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG -OQ092463,vif,5061,5640,4391,4970,forward,0.296875,MENRWQVMIVWQVDRMRIRTWKSLVKHHMYISRKAKGWVYKHHYDSIHPRISSEVHIPLGDAKLVITTYWGLHTGERDWHLGQGVSIEWRKERYSTQVDPGLADQLIHRYYFDCFSESAIRNAILGRIVSPSCDYQAGHNKVGSLQYLALAALITPKKIKPPLPSVKKLTEDRWNKPQKTKGHRGSHTMNGH,MENRWQVMIVWQVDRMRIRTWKSLVKHHMYISRKAKGWVYKHHYDSIHPRISSEVHIPLGDAKLVITTYWGLHTGERDWHLGQGVSIEWRKERYSTQVDPGLADQLIHRYYFDCFSESAIRNAILGRIVSPSCDYQAGHNKVGSLQYLALAALITPKKIKPPLPSVKKLTEDRWNKPQKTKGHRGSHTMNGH*,ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGGACATGGAAAAGTTTAGTAAAACACCATATGTATATTTCAAGGAAAGCTAAGGGATGGGTTTATAAGCATCACTATGACAGTATTCATCCAAGAATAAGTTCAGAAGTTCACATCCCACTAGGGGATGCGAAATTGGTAATAACAACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCACTTGGGTCAGGGAGTCTCCATAGAATGGAGAAAGGAGAGATATAGCACACAAGTAGACCCTGGCCTAGCAGACCAACTAATTCATCGGTATTACTTTGATTGTTTTTCAGAATCTGCCATAAGAAATGCCATATTAGGACGTATAGTTAGTCCTAGTTGTGATTATCAAGCAGGACATAACAAGGTAGGATCTCTACAGTACTTGGCACTAGCAGCATTAATAACACCAAAAAAGATAAAGCCACCTTTGCCTAGTGTTAAGAAACTGACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACACTAG -OQ092463,vpr,5579,5870,4909,5200,forward,0.30208333333333326,MEQAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHSLGQHIYETYGDTWAGVEAITRILQQLLFIHFRIGCQHSRIGIIQRRRARNGTSRS,MEQAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHSLGQHIYETYGDTWAGVEAITRILQQLLFIHFRIGCQHSRIGIIQRRRARNGTSRS*,ATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACACTAGAGCTTTTAGAGGAGCTTAAGAATGAAGCTGTTAGACACTTCCCTAGGCCATGGCTCCACAGCTTAGGGCAACATATCTATGAAACATATGGAGATACTTGGGCAGGAGTGGAAGCCATAACAAGAATTCTGCAACAACTGCTGTTTATTCATTTCAGAATTGGGTGTCAACATAGCAGAATAGGCATCATTCAACGGAGGAGAGCAAGAAATGGAACCAGTAGATCCTAG -OQ092463,tat_exon1,5850,6066,5180,5395,forward,0.38888888888888884,MEPVDPRLEPWKHPGSQPRTACTSCYCKQCCFHCQVCFITKGLGISYGRKKRRQRRRAHQDSQTHQASLSKQ,MEPVDPRLEPWKHPGSQPRTACTSCYCKQCCFHCQVCFITKGLGISYGRKKRRQRRRAHQDSQTHQASLSKQ,ATGGAACCAGTAGATCCTAGATTAGAGCCCTGGAAGCATCCAGGAAGTCAGCCTAGGACTGCTTGTACCTCTTGTTATTGTAAGCAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAACAAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCATCAAGACAGTCAGACTCATCAAGCTTCTCTATCAAAGCAG -OQ092463,rev_exon1,5989,6067,5319,5395,forward,0.34615384615384626,MAGRSGDSDEELIKTVRLIKLLYQSS,MAGRSGDSDEELIKTVRLIKLLYQSS,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCATCAAGACAGTCAGACTCATCAAGCTTCTCTATCAAAGCAGT -OQ092463,vpu,6081,6330,5411,5657,forward,0.44999999999999996,MQPLEISAIVALVVAIIIAIVVWSIVLIEYRKILRQRKIDRIIDRIRERAEDSGNESEGDQEELSALVVEMGHDAPWDVNDL,MQPLEISAIVALVVAIIIAIVVWSIVLIEYRKILRQRKIDRIIDRIRERAEDSGNESEGDQEELSALVVEMGHDAPWDVNDL*,ATGCAACCTTTAGAAATATCAGCAATAGTAGCATTAGTAGTAGCAATAATAATAGCAATAGTTGTGTGGTCCATAGTACTCATAGAATATAGGAAAATATTAAGACAAAGAAAAATAGACAGGATAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGCGAGGGGGATCAGGAAGAATTATCAGCACTTGTTGTGGAGATGGGGCACGATGCTCCTTGGGATGTTAATGATCTGTAG -OQ092463,env,6244,8827,5574,8124,forward,0.44534746760895216,MRARGIRKNYQHLLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEATTTLFYASDAKAYGTEVHNVWATHACVPTDPNPQEVVLGNVTENFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTNYNNTNTTSTKNTTPSTTASSGERMGEGEIKNCSFNITTSLRDKMQKEYALFYRPDIVPIDNDNTSYRLISCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNNKKFNGSGPCTNVSTIQCTHGIRPVVSTQLLLNGSLAEEEIVIRSENFSDNAKTIIVHLKDSVEITCIRPNNNTRKSIPMGPGKAFFATGAIIGDIRQAHCKINKTKWNNTLDQIFKKLREQFGNNKTIIFNHSSGGDPEIVTHNFNCGGEFFYCNTSKLFNSTWNETSSWKDESNGTITLPCRIKQIINLWQEVGKAMYAPPIRGLIKCSSNITGLLITRDGGKNNESNTTEIFRPEGGNMKDNWRSELYKYKVVKIEPLGIAPTKAKRRVVQREKRAVGIGAMFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKTLEQIWDNMTWMQWEREIDNYTSLIYTLIEESQNQQEKNELELLELDKWASLWNWFDITKWLWYIKIFIMIVGGLVGLRIVFAVLSIANRVRQGYSPLSFQTHPPAPRGPDRPEGIGEEGGERDRDRSGPLVNGFLAIIWVDLRSLCLFSYHRLRDLLLIVTRIVELLGRGGWELLKYWWNLLQYWSQELKNSAISLLNATAIAVAEGTDRIIEVLQRAGRAFLNIPRRIRQGLERALL,MRARGIRKNYQHLLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEATTTLFYASDAKAYGTEVHNVWATHACVPTDPNPQEVVLGNVTENFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTNYNNTNTTSTKNTTPSTTASSGERMGEGEIKNCSFNITTSLRDKMQKEYALFYRPDIVPIDNDNTSYRLISCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNNKKFNGSGPCTNVSTIQCTHGIRPVVSTQLLLNGSLAEEEIVIRSENFSDNAKTIIVHLKDSVEITCIRPNNNTRKSIPMGPGKAFFATGAIIGDIRQAHCKINKTKWNNTLDQIFKKLREQFGNNKTIIFNHSSGGDPEIVTHNFNCGGEFFYCNTSKLFNSTWNETSSWKDESNGTITLPCRIKQIINLWQEVGKAMYAPPIRGLIKCSSNITGLLITRDGGKNNESNTTEIFRPEGGNMKDNWRSELYKYKVVKIEPLGIAPTKAKRRVVQREKRAVGIGAMFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKTLEQIWDNMTWMQWEREIDNYTSLIYTLIEESQNQQEKNELELLELDKWASLWNWFDITKWLWYIKIFIMIVGGLVGLRIVFAVLSIANRVRQGYSPLSFQTHPPAPRGPDRPEGIGEEGGERDRDRSGPLVNGFLAIIWVDLRSLCLFSYHRLRDLLLIVTRIVELLGRGGWELLKYWWNLLQYWSQELKNSAISLLNATAIAVAEGTDRIIEVLQRAGRAFLNIPRRIRQGLERALL*,ATGAGAGCGAGGGGGATCAGGAAGAATTATCAGCACTTGTTGTGGAGATGGGGCACGATGCTCCTTGGGATGTTAATGATCTGTAGTGCTACAGAAAAATTGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAAAGAAGCAACTACCACTCTATTTTATGCATCAGATGCTAAAGCATATGGTACAGAGGTACATAATGTTTGGGCTACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGTATTGGGAAATGTGACAGAGAATTTTAACATGTGGAAAAATGACATGGTAGAACAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTGAATTGCACTAATTATAATAACACCAATACCACTAGTACCAAGAATACCACCCCTAGTACCACTGCTAGTAGCGGGGAAAGGATGGGGGAAGGAGAAATAAAAAACTGCTCTTTCAATATCACCACAAGCCTAAGAGATAAGATGCAGAAAGAATATGCACTCTTTTATAGACCTGATATAGTACCAATAGATAATGATAATACTAGTTATAGGTTGATAAGTTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTATTGTGCCCCAGCTGGTTTTGCGATTCTAAAGTGTAACAATAAGAAGTTCAATGGATCAGGACCATGTACAAATGTCAGCACAATACAATGTACACATGGAATTAGGCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTCTAGCAGAAGAAGAGATAGTAATTAGATCTGAAAATTTCTCAGACAATGCTAAAACCATAATAGTACATCTGAAGGATTCTGTAGAAATTACTTGTATAAGACCCAACAACAATACAAGAAAAAGTATACCTATGGGACCAGGGAAAGCATTTTTTGCAACAGGAGCCATAATAGGAGATATAAGACAAGCACATTGTAAAATTAATAAAACGAAATGGAATAACACTTTAGACCAGATATTTAAAAAGTTAAGAGAACAATTTGGGAATAATAAGACAATAATCTTTAATCACTCCTCAGGAGGGGACCCAGAAATTGTAACGCACAATTTTAATTGTGGAGGGGAATTTTTCTACTGTAATACATCAAAACTGTTTAATAGTACTTGGAATGAGACTAGTTCTTGGAAGGATGAGTCAAATGGCACTATCACACTCCCATGCAGAATAAAGCAAATTATAAACCTGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCATTAGAGGACTCATTAAATGTTCATCAAATATCACAGGGCTGCTAATAACAAGAGATGGTGGGAAAAATAATGAGAGCAACACCACCGAGATTTTCAGACCTGAAGGAGGAAATATGAAGGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAAAATTGAACCATTAGGAATAGCACCCACCAAGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTATGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAATAACGCTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAACAGCAGAACAATTTGCTGAGGGCTATTGAGGCGCAACAGCATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTAAAGGATCAACAGCTCCTGGGAATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCTTGGAATGCTAGTTGGAGTAATAAAACTCTGGAACAGATTTGGGATAACATGACCTGGATGCAATGGGAAAGAGAAATTGACAATTACACAAGCTTGATATACACTTTAATTGAAGAATCGCAAAACCAACAAGAAAAGAATGAACTAGAATTATTGGAATTAGATAAATGGGCAAGTTTGTGGAATTGGTTTGACATAACAAAGTGGCTGTGGTATATAAAAATATTCATAATGATAGTAGGAGGCTTGGTAGGTTTAAGAATAGTTTTTGCTGTGCTTTCTATAGCGAATAGAGTTAGGCAGGGATACTCACCATTATCGTTTCAGACCCACCCCCCAGCCCCGAGGGGACCCGACAGGCCAGAAGGAATCGGAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGGACCATTAGTGAACGGATTCTTAGCAATTATCTGGGTCGACCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAACGAGGATTGTGGAACTTCTGGGACGCGGGGGGTGGGAACTCCTCAAGTATTGGTGGAATCTCCTGCAGTATTGGAGTCAGGAACTAAAGAATAGTGCTATTAGCTTGCTTAATGCTACAGCCATAGCAGTAGCTGAGGGGACAGACAGGATTATAGAAGTATTACAAAGAGCTGGGAGAGCTTTTCTCAACATACCTAGAAGAATAAGACAGGGCTTGGAAAGGGCTTTGCTATAA -OQ092463,tat_exon2,8408,8504,7705,7798,forward,0.6000000000000001,RPTPQPRGDPTGQKESEKKVERETETDPDH,RPTPQPRGDPTGQKESEKKVERETETDPDH**,AGACCCACCCCCCAGCCCCGAGGGGACCCGACAGGCCAGAAGGAATCGGAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGGACCATTAGTGA -OQ092463,rev_exon2,8409,8685,7706,7982,forward,0.3296703296703296,DPPPSPEGTRQARRNRRRRWRERQRQIRTISERILSNYLGRPAEPVPLQLPPLERLTLDCNEDCGTSGTRGVGTPQVLVESPAVLESGTKE,DPPPSPEGTRQARRNRRRRWRERQRQIRTISERILSNYLGRPAEPVPLQLPPLERLTLDCNEDCGTSGTRGVGTPQVLVESPAVLESGTKE*,GACCCACCCCCCAGCCCCGAGGGGACCCGACAGGCCAGAAGGAATCGGAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGGACCATTAGTGAACGGATTCTTAGCAATTATCTGGGTCGACCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAACGAGGATTGTGGAACTTCTGGGACGCGGGGGGTGGGAACTCCTCAAGTATTGGTGGAATCTCCTGCAGTATTGGAGTCAGGAACTAAAGAATAG -OQ092463,nef,8828,9461,8125,8752,forward,0.29182692307692304,MGGKWSKSSVVGWPAIRERMRRAEPAAEPAADGVGAASRDLEKHGAITSSNTAATNADCAWLEAQEEEEVGFPVRPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIYSQKRQDILDLWVYHTQGYFPDWQNYTPGPGIRYPLTFGWCFKLVPVEPDKVEEANEGENNSLLHPMSLHGMDDPEKEVLVWRFDSRLAFHHMARELHPEYYKDC,MGGKWSKSSVVGWPAIRERMRRAEPAAEPAADGVGAASRDLEKHGAITSSNTAATNADCAWLEAQEEEEVGFPVRPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIYSQKRQDILDLWVYHTQGYFPDWQNYTPGPGIRYPLTFGWCFKLVPVEPDKVEEANEGENNSLLHPMSLHGMDDPEKEVLVWRFDSRLAFHHMARELHPEYYKDC*,ATGGGTGGTAAGTGGTCAAAAAGTAGTGTGGTTGGATGGCCTGCTATAAGGGAAAGAATGAGACGAGCTGAGCCAGCAGCAGAGCCAGCAGCAGATGGGGTGGGAGCAGCATCTAGAGACCTGGAAAAACATGGAGCAATCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGTGCCTGGCTAGAAGCACAAGAGGAGGAGGAGGTGGGTTTTCCAGTCAGGCCTCAGGTACCTTTAAGACCAATGACTTATAAGGCAGCTGTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGTTAATTTACTCCCAGAAAAGACAAGATATCCTTGATCTGTGGGTCTACCACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGATAAGATATCCACTGACCTTTGGATGGTGCTTCAAGCTAGTGCCAGTTGAGCCAGATAAGGTAGAAGAGGCCAATGAAGGAGAGAACAACAGCTTGTTACACCCTATGAGCCTGCATGGGATGGATGACCCAGAGAAAGAAGTGTTAGTATGGAGATTTGACAGTCGCCTGGCATTTCATCACATGGCCCGAGAGCTGCATCCGGAGTACTACAAGGATTGCTGA -OQ092465,gag,855,2364,200,1700,forward,0.3737903225806454,MGARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSKGCRQILEQLQPSLQTGSEELKSLYNTVATLYCVHQQIDVKDTKEALDKIEEEQNKSKKKVQQAATDTGNNSQASQNYPIVQNLQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKESFRDYVDRFYKTLRAEQCTQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTTPGAIMMQRGNFRSQRKTVKCFNCGKEGHIAKNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPAESFRFGEETTTPSQKQEPIDKELYPLASLRSLFGNDPSSQ,MGARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSKGCRQILEQLQPSLQTGSEELKSLYNTVATLYCVHQQIDVKDTKEALDKIEEEQNKSKKKVQQAATDTGNNSQASQNYPIVQNLQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKESFRDYVDRFYKTLRAEQCTQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTTPGAIMMQRGNFRSQRKTVKCFNCGKEGHIAKNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPAESFRFGEETTTPSQKQEPIDKELYPLASLRSLFGNDPSSQ*R*,ATGGGTGCGAGAGCGTCGGTATTAAGCGGGGGAGAATTAGATAGGTGGGAAAAAATTCGGTTAAGGCCAGGAGGAAAGAAAAAATATAAATTAAAACATATAGTATGGGCAAGCAGGGAACTAGAACGGTTTGCAGTTAATCCTGGCCTGTTAGAAACATCAAAAGGCTGTAGACAAATATTGGAACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATATAATACAGTAGCAACCCTCTATTGTGTGCATCAACAGATAGATGTAAAAGACACCAAGGAAGCTTTAGATAAGATAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGTACAGCAAGCAGCAACTGACACAGGAAACAACAGCCAGGCCAGCCAAAATTACCCTATAGTGCAGAATCTCCAGGGGCAAATGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGACTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGGATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGGATGTATAGTCCTACCAGCATTCTGGACATAAGACAAGGACCAAAGGAATCCTTTAGAGACTATGTAGACCGGTTCTATAAAACTCTAAGAGCCGAACAATGTACACAGGAGGTAAAAAATTGGATGACAGAAACATTATTGGTCCAAAATGCAAACCCAGACTGCAAGACTATTTTAAAAGCATTAGGACCAGCAGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCTGGCCATAAAGCAAGAGTTTTGGCAGAAGCAATGAGCCAAGTAACAACTCCAGGTGCCATAATGATGCAGAGAGGCAATTTCAGGAGCCAAAGAAAGACTGTTAAGTGTTTCAACTGTGGCAAAGAAGGGCATATAGCTAAAAATTGCAGGGCCCCTAGAAAAAGGGGCTGTTGGAAATGTGGAAAAGAAGGACACCAAATGAAAGATTGCACTGAGAGACAGGCTAATTTTTTAGGGAAGATCTGGCCTTCCCACAAGGGGAGGCCAGGGAATTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGCAGAGAGCTTCAGGTTCGGGGAGGAGACAACAACTCCCTCTCAGAAGCAGGAGCCGATAGACAAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAG -OQ092465,pol,2150,5162,1492,4504,forward,0.1734795613160518,FFREDLAFPQGEAREFSSEQTRANSPTSRELQVRGGDNNSLSEAGADRQGTVSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMTLPGRWKPKMIGGIGGFIKVRQYDQILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIDELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCRLLKGTKALTEVVPLTREAELELAENREILKEPVHGVYYDPTKDLIAELQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQRETWDTWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKDKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIDKAQDDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGGNFISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVYIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED,FFREDLAFPQGEAREFSSEQTRANSPTSRELQVRGGDNNSLSEAGADRQGTVSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMTLPGRWKPKMIGGIGGFIKVRQYDQILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIDELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCRLLKGTKALTEVVPLTREAELELAENREILKEPVHGVYYDPTKDLIAELQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQRETWDTWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKDKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIDKAQDDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGGNFISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVYIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAGATCTGGCCTTCCCACAAGGGGAGGCCAGGGAATTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGCAGAGAGCTTCAGGTTCGGGGAGGAGACAACAACTCCCTCTCAGAAGCAGGAGCCGATAGACAAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAGGGGGGCAACTAAAGGAAGCTCTATTAGACACAGGAGCAGATGATACAGTATTAGAAGACATGACTTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACTTGTAGAAATCTGTGGACATAAAGCTATAGGTACAGTTTTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAAATTGGTTGCACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATCTGTACAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATATAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCCGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATAAAGACTTCAGGAAGTATACTGCATTTACCATACCTAGTATAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGACATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGATGAATTAAGACAACATCTGTTGAAGTGGGGATTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGGTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGTTGCCAGAAAAAGACAGTTGGACTGTTAATGACATACAGAAGTTAGTGGGAAAATTGAATTGGGCAAGTCAGATTTACCCAGGGATTAAGGTAAAGCAATTATGTAGACTCCTTAAGGGAACCAAGGCACTAACAGAAGTAGTACCACTAACAAGAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTCTAAAAGAACCAGTACATGGAGTGTATTATGACCCAACAAAAGACTTAATAGCAGAGTTACAGAAGCAGGGACAAGGCCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGAGGTGCCCACACTAATGATGTAAAACAGCTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAGTTTAAACTACCCATACAAAGAGAAACATGGGACACATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTTTATGTAGATGGTGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAATAGAGGAAGACAAAAAGTTGTCTCCCTAACTGACACCACAAATCAGAAGACTGAGTTACAAGCAATTCATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATCCAAGCACAACCAGATAAAAGTGAATCAGAGTTAGTTAATCAAATAATAGAACAGTTAATAAAAAAGGACAAAGTATACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTGCTGGAATCAGGAAAGTACTATTTTTAGATGGAATAGATAAGGCCCAAGATGATCATGAGAAATATCACAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGCCAGTTAAAAGGGGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAACTGGATTGTACACACTTAGAAGGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTATCTTAAAATTAGCAGGAAGATGGCCAGTAAAAACAATACATACAGACAATGGTGGCAATTTCATCAGTACTACAGTTAAGGCCGCCTGTTGGTGGGCGGGGATCAAGCAGGAATTTGGCATACCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATCATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATACATACACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATTACAAAACTTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGACATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG -OQ092465,vif,5106,5685,4448,5027,forward,0.33854166666666674,MENRWQVMIVWQVDRMRIRTWKSLVKHHMYISKKAKGWIYKHHYDSINPKISSEVHIPLGDAKLVITTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPGLADRLIHLYYFDCFSESAIRNAILGRIVSPSCDYQAGHNKVGSLQYLALTALITPKKIKPPLPSVKKLTEDRWNKPQKTKGHRGSHTMNGH,MENRWQVMIVWQVDRMRIRTWKSLVKHHMYISKKAKGWIYKHHYDSINPKISSEVHIPLGDAKLVITTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPGLADRLIHLYYFDCFSESAIRNAILGRIVSPSCDYQAGHNKVGSLQYLALTALITPKKIKPPLPSVKKLTEDRWNKPQKTKGHRGSHTMNGH*,ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGGACATGGAAAAGTTTAGTAAAACACCATATGTATATTTCAAAGAAAGCTAAGGGATGGATTTATAAGCATCACTATGACAGTATTAATCCAAAAATAAGTTCAGAAGTTCACATCCCACTAGGGGATGCAAAATTGGTAATAACAACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGGAAAAGGAGATATAGCACACAAGTAGACCCTGGCCTAGCAGACCGACTAATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACGTATAGTTAGTCCTAGTTGTGATTATCAAGCAGGACATAACAAGGTAGGGTCTCTACAGTACTTGGCACTAACAGCACTAATAACACCAAAAAAGATAAAGCCACCTTTGCCTAGTGTTAAGAAACTGACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACACTAG -OQ092465,vpr,5624,5915,4966,5257,forward,0.17708333333333326,MEQAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHSLGQHIYETYGDTWAGVEAIIRILQQLLFIHFRIGCQHSRIGILQRRRARNGASRS,MEQAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHSLGQHIYETYGDTWAGVEAIIRILQQLLFIHFRIGCQHSRIGILQRRRARNGASRS*,ATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACACTAGAGCTTTTAGAGGAGCTTAAGAATGAAGCTGTTAGACACTTTCCTAGGCCATGGCTACACAGCTTAGGGCAACATATCTATGAAACATATGGAGATACTTGGGCAGGAGTGGAAGCCATAATAAGAATTCTGCAACAACTGCTGTTTATTCATTTCAGAATTGGGTGTCAACATAGCAGAATAGGCATCCTTCAACGGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAG -OQ092465,tat_exon1,5895,6111,5237,5452,forward,0.25,MEPVDPRLEPWKHPGSQPRTACTSCYCKQCCFHCQVCFITKGLGISYGRKKRRQRRRAHQDSQTHQASLSKQ,MEPVDPRLEPWKHPGSQPRTACTSCYCKQCCFHCQVCFITKGLGISYGRKKRRQRRRAHQDSQTHQASLSKQ,ATGGAGCCAGTAGATCCTAGATTAGAGCCCTGGAAGCATCCAGGAAGTCAGCCTAGGACTGCTTGTACCTCTTGTTATTGTAAGCAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAACAAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCATCAAGACAGTCAGACTCATCAAGCTTCTCTATCAAAGCAG -OQ092465,rev_exon1,6034,6112,5376,5452,forward,0.5769230769230769,MAGRSGDSDEELIKTVRLIKLLYQSS,MAGRSGDSDEELIKTVRLIKLLYQSS,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCATCAAGACAGTCAGACTCATCAAGCTTCTCTATCAAAGCAGT -OQ092465,vpu,6126,6375,5468,5708,forward,0.3063291139240505,MQPLVISAIVALVVVAIIAIVVWSIVLIEYRKILRQRKIDRIIDRIRERAEDSGNESEGDQEELSALVVEMGHDAPWDVNDL,MQPLVISAIVALVVVAIIAIVVWSIVLIEYRKILRQRKIDRIIDRIRERAEDSGNESEGDQEELSALVVEMGHDAPWDVNDL*,ATGCAACCTTTAGTAATATCAGCAATAGTAGCATTAGTAGTAGTAGCGATAATAGCAATAGTTGTGTGGTCCATAGTACTCATAGAATATAGGAAAATATTAAGACAAAGAAAAATAGACAGGATAATTGATAGAATAAGGGAAAGAGCAGAAGACAGTGGCAATGAGAGCGAGGGGGATCAGGAAGAATTATCAGCACTTGTTGTGGAGATGGGGCACGATGCTCCTTGGGATGTTAATGATCTGTAG -OQ092465,env,6289,8881,5631,8208,forward,0.5249417249417256,MRARGIRKNYQHLLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEATTTLFCASDAKAYGTEVHNVWATHACVPTDPNPQEVVLGNVTENFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTNYNNTGANNTTSTNTTTPSTTVSSEERMGEGEIKNCSFNITTSLRDKMQKEYALFYRPDIVPIDNTSYRLISCNTSVITQACPKVTFEPIPIHYCAPAGFAILKCNNKTFNGSGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVIRSENFSDNAKNIIVHLNKSVEITCIRPNNNTRKSIPMGPGKAFFATGAIIGDIRQAHCKINKTKWNNTLEQVFKKLREQFGNNKTIIFNHSSGGDPEIVTHNFNCGGEFFYCNTSKLFNSTWNETSYWKGEGSNNDTITLPCRIKQIINLWQEVGKAMYAPPIRGLIKCSSNITGLLLTRDGGNESETTDTETFRPVGGNMKDNWRSELYKYKVVKIEPLGIAPTKAKRRVVQREKRAVGLGAMFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKNLTQIWDNMTWMQWEKEIDNYTSLIYTLIEESQNQQEKNELELLELDKWASLWNWFDITKWLWYIKIFIMIVGGLVGLRIVFAVLSIANRVRQGYSPLSFQTHLPAPRGPDRPEGIEGEGGERDRDRSGPLVNGFLAIIWVDLRSLCLFSYHRLRDLLLIVTRIVELLGRGGWELLKYWWNLLQYWSQELKNSAISLLNATAIAVAEGTDRIIEVLQRAGRAFLHIPRRIRQGLERALL,MRARGIRKNYQHLLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEATTTLFCASDAKAYGTEVHNVWATHACVPTDPNPQEVVLGNVTENFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTNYNNTGANNTTSTNTTTPSTTVSSEERMGEGEIKNCSFNITTSLRDKMQKEYALFYRPDIVPIDNTSYRLISCNTSVITQACPKVTFEPIPIHYCAPAGFAILKCNNKTFNGSGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVIRSENFSDNAKNIIVHLNKSVEITCIRPNNNTRKSIPMGPGKAFFATGAIIGDIRQAHCKINKTKWNNTLEQVFKKLREQFGNNKTIIFNHSSGGDPEIVTHNFNCGGEFFYCNTSKLFNSTWNETSYWKGEGSNNDTITLPCRIKQIINLWQEVGKAMYAPPIRGLIKCSSNITGLLLTRDGGNESETTDTETFRPVGGNMKDNWRSELYKYKVVKIEPLGIAPTKAKRRVVQREKRAVGLGAMFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKNLTQIWDNMTWMQWEKEIDNYTSLIYTLIEESQNQQEKNELELLELDKWASLWNWFDITKWLWYIKIFIMIVGGLVGLRIVFAVLSIANRVRQGYSPLSFQTHLPAPRGPDRPEGIEGEGGERDRDRSGPLVNGFLAIIWVDLRSLCLFSYHRLRDLLLIVTRIVELLGRGGWELLKYWWNLLQYWSQELKNSAISLLNATAIAVAEGTDRIIEVLQRAGRAFLHIPRRIRQGLERALL*,ATGAGAGCGAGGGGGATCAGGAAGAATTATCAGCACTTGTTGTGGAGATGGGGCACGATGCTCCTTGGGATGTTAATGATCTGTAGCGCTACAGAAAAATTGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAAAGAAGCAACTACCACTCTATTTTGTGCATCAGATGCTAAAGCATATGGTACAGAGGTACATAATGTGTGGGCTACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGTATTGGGAAATGTGACAGAGAATTTTAACATGTGGAAAAATGACATGGTAGAACAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGTCTAAAACCATGTGTAAAATTAACCCCACTCTGTGTTACTTTGAATTGCACTAATTATAATAACACTGGTGCCAATAATACCACTAGTACCAATACTACCACCCCTAGTACCACTGTTAGTAGCGAGGAAAGGATGGGGGAAGGAGAAATAAAAAACTGCTCTTTCAATATCACCACAAGCCTAAGAGATAAGATGCAGAAAGAATATGCACTCTTTTATAGACCTGATATAGTACCAATAGATAATACTAGTTATAGGTTGATAAGTTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTAACCTTTGAGCCAATTCCCATACATTATTGTGCCCCAGCTGGTTTTGCGATTCTAAAGTGTAACAATAAGACGTTCAATGGATCAGGACCATGTACAAATGTCAGCACAGTACAATGTACACATGGAATTAGGCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTCTAGCAGAAGAAGAGATAGTAATTAGATCTGAAAATTTCTCAGACAATGCTAAAAACATAATAGTACATCTGAATAAATCTGTAGAAATTACTTGTATAAGACCCAACAACAATACAAGAAAAAGTATACCTATGGGACCAGGGAAAGCATTTTTTGCAACAGGAGCCATAATAGGAGATATAAGACAAGCACATTGTAAAATTAATAAAACGAAATGGAATAACACTTTAGAGCAGGTATTTAAAAAGTTAAGAGAACAATTTGGGAATAATAAGACAATAATCTTTAATCACTCCTCAGGAGGGGACCCAGAAATTGTAACGCACAATTTTAATTGTGGAGGGGAATTTTTCTACTGTAATACATCAAAACTGTTTAATAGTACTTGGAATGAGACTAGTTATTGGAAGGGTGAAGGGTCAAACAATGACACTATCACACTCCCATGCAGAATAAAGCAAATTATAAACCTGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCATCAGAGGACTCATTAAATGTTCATCAAATATCACAGGGCTACTATTAACAAGAGATGGTGGTAACGAGAGCGAGACCACCGACACTGAGACCTTCAGACCTGTAGGAGGAAATATGAAGGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAAAATTGAACCATTAGGAATAGCACCCACCAAGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGATTAGGAGCTATGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAATAACGCTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAACAGCAGAACAATTTGCTGAGGGCTATTGAGGCGCAACAGCATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTAAAGGATCAACAGCTCCTGGGAATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCTTGGAATGCTAGTTGGAGTAATAAAAATCTGACACAGATTTGGGATAACATGACCTGGATGCAATGGGAAAAAGAAATTGACAATTACACAAGCTTAATATACACCTTAATTGAAGAATCGCAAAACCAACAAGAAAAGAATGAACTAGAATTATTGGAATTAGATAAATGGGCAAGTTTGTGGAATTGGTTTGACATAACAAAGTGGCTGTGGTATATAAAAATATTCATAATGATAGTAGGAGGCTTGGTAGGTTTAAGAATAGTTTTTGCTGTGCTTTCTATAGCGAATAGAGTTAGGCAGGGATACTCACCATTATCGTTTCAGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCAGAAGGAATCGAAGGAGAAGGTGGAGAGAGAGACAGAGACAGATCCGGACCATTAGTGAACGGATTCTTAGCAATTATCTGGGTCGACCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAACGAGGATTGTGGAACTTCTGGGACGCGGGGGGTGGGAACTCCTCAAGTATTGGTGGAATCTCCTGCAGTATTGGAGTCAGGAACTAAAGAATAGTGCTATTAGCTTGCTTAATGCTACAGCCATAGCAGTAGCTGAGGGGACAGATAGGATTATAGAAGTATTACAAAGAGCAGGGAGAGCTTTTCTCCACATACCTAGAAGAATAAGACAGGGCTTGGAAAGGGCTTTGCTATAA -OQ092465,tat_exon2,8462,8558,7789,7882,forward,3.5,RPTSQPRGDPTGQKESKEKVERETETDPDH,RPTSQPRGDPTGQKESKEKVERETETDPDH**,AGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCAGAAGGAATCGAAGGAGAAGGTGGAGAGAGAGACAGAGACAGATCCGGACCATTAGTGA -OQ092465,rev_exon2,8463,8739,7790,8066,forward,0.41758241758241765,DPPPSPEGTRQARRNRRRRWRERQRQIRTISERILSNYLGRPAEPVPLQLPPLERLTLDCNEDCGTSGTRGVGTPQVLVESPAVLESGTKE,DPPPSPEGTRQARRNRRRRWRERQRQIRTISERILSNYLGRPAEPVPLQLPPLERLTLDCNEDCGTSGTRGVGTPQVLVESPAVLESGTKE*,GACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCAGAAGGAATCGAAGGAGAAGGTGGAGAGAGAGACAGAGACAGATCCGGACCATTAGTGAACGGATTCTTAGCAATTATCTGGGTCGACCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAACGAGGATTGTGGAACTTCTGGGACGCGGGGGGTGGGAACTCCTCAAGTATTGGTGGAATCTCCTGCAGTATTGGAGTCAGGAACTAAAGAATAG -OQ092465,nef,8882,9515,8209,8842,forward,0.3285714285714285,MGGKWSKSSVVGWPKIRERMRRAEPAAEPAADGVGAASRDLEKHGAITSSNTAATNADCAWLEAQEEEEVGFPVRPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIYSQKRQDILDLWVYHTQGYFPDWQNYTPGPGIRYPLTFGWCFKLVPVEPDKVEEANEGENNSLLHPMSLHGMDDPEKEVLVWRFDSRLAFHHMARELHPEYYKDC,MGGKWSKSSVVGWPKIRERMRRAEPAAEPAADGVGAASRDLEKHGAITSSNTAATNADCAWLEAQEEEEVGFPVRPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIYSQKRQDILDLWVYHTQGYFPDWQNYTPGPGIRYPLTFGWCFKLVPVEPDKVEEANEGENNSLLHPMSLHGMDDPEKEVLVWRFDSRLAFHHMARELHPEYYKDC*,ATGGGTGGCAAGTGGTCAAAAAGTAGTGTGGTTGGATGGCCTAAAATAAGGGAAAGAATGAGACGAGCTGAGCCAGCAGCAGAACCAGCAGCAGATGGGGTGGGAGCAGCATCTCGAGACCTGGAAAAACATGGAGCAATCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGTGCCTGGCTAGAAGCACAAGAGGAGGAGGAGGTGGGTTTTCCAGTCAGGCCTCAGGTACCTTTAAGACCAATGACTTATAAGGCAGCTGTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCCCAGAAAAGACAAGATATCCTTGATCTGTGGGTCTACCACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGATCAGATATCCACTGACCTTTGGATGGTGCTTCAAGCTAGTACCAGTTGAGCCAGATAAGGTAGAAGAGGCCAATGAAGGAGAGAACAACAGCTTGTTACACCCTATGAGCCTGCATGGGATGGATGACCCAGAGAAAGAAGTGTTAGTATGGAGATTTGACAGTCGCCTGGCATTTCATCACATGGCCCGAGAGCTGCATCCGGAGTACTACAAGGACTGCTGA -OQ092462,gag,767,2270,789,2292,forward,0.27679999999999993,MGARASVLSGGELDKWEKIRLRPGGKKKYQLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPALQTGSEELKSLFHTVATLYCVHQKIEVKDTKEALEKIEEEQKKSKKKAQQAAADTGNNSQVSQNYPIVQNMQGQMVHQPLSPRTLNAWVKVIEDKAFSPEVIPMFTALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVQAGPVAPGQLREPRGSDIAGTTSNLQEQIAWMTHNPPVPVGEIYKRWILLGLNKIVRMYSPVSILDIKQGPKEPFRDYVDRFYKTLRAEQASQDVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPSHKARVLAEAMSQVANPASIMMQRGNFRNQRKPIKCFNCGKEGHIAKNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKVWPSRKGRPGNFLQSRPEPTAPPEESFRFGEETTTPSQKPEPIDKELYPLASLRSLFGNDPSSQ,MGARASVLSGGELDKWEKIRLRPGGKKKYQLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPALQTGSEELKSLFHTVATLYCVHQKIEVKDTKEALEKIEEEQKKSKKKAQQAAADTGNNSQVSQNYPIVQNMQGQMVHQPLSPRTLNAWVKVIEDKAFSPEVIPMFTALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVQAGPVAPGQLREPRGSDIAGTTSNLQEQIAWMTHNPPVPVGEIYKRWILLGLNKIVRMYSPVSILDIKQGPKEPFRDYVDRFYKTLRAEQASQDVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPSHKARVLAEAMSQVANPASIMMQRGNFRNQRKPIKCFNCGKEGHIAKNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKVWPSRKGRPGNFLQSRPEPTAPPEESFRFGEETTTPSQKPEPIDKELYPLASLRSLFGNDPSSQ*,ATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAGAATTAGACAAATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATCAGCTAAAACATATAGTATGGGCAAGCAGGGAACTAGAGCGATTTGCAGTTAATCCCGGCCTGTTAGAAACATCGGAGGGCTGTAGACAAATACTAGGGCAACTACAGCCCGCTCTTCAGACAGGATCAGAAGAACTTAAATCACTATTTCATACAGTAGCAACCCTCTATTGTGTGCATCAAAAGATAGAGGTGAAAGACACCAAAGAAGCTTTAGAGAAGATAGAGGAAGAGCAAAAGAAAAGTAAGAAAAAGGCACAGCAAGCAGCCGCTGACACAGGAAATAACAGCCAGGTCAGCCAAAATTACCCTATAGTGCAGAACATGCAGGGACAAATGGTACATCAGCCCCTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAATAGAAGATAAGGCTTTCAGTCCAGAAGTAATACCCATGTTTACAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAATACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATCAATGAGGAAGCTGCAGAATGGGATAGATTACATCCAGTGCAGGCAGGGCCTGTTGCGCCAGGCCAGCTACGAGAGCCAAGGGGAAGTGACATAGCAGGAACTACTAGTAACCTTCAGGAGCAAATAGCATGGATGACACATAATCCACCTGTCCCAGTAGGAGAAATCTATAAAAGATGGATACTTCTGGGATTAAATAAAATAGTAAGAATGTACAGCCCCGTCAGCATTCTGGACATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAAAACTCTAAGAGCTGAGCAGGCTTCACAGGATGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAGAATGCGAACCCAGATTGTAAGACTATTTTGAAAGCATTAGGACCAGCAGCTACATTAGAAGAAATGATGACAGCATGTCAGGGAGTAGGAGGACCCAGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAGCAAATCCAGCTAGCATAATGATGCAGAGAGGCAATTTTAGAAACCAAAGAAAGCCTATTAAGTGTTTCAACTGTGGCAAAGAGGGGCATATTGCTAAAAATTGCAGGGCCCCTAGGAAAAGGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGATTGTACTGAGAGACAGGCTAATTTTTTAGGGAAGGTCTGGCCTTCCCGCAAGGGGAGGCCAGGGAATTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACGACAACTCCCTCTCAGAAACCGGAGCCGATAGACAAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAA -OQ092462,pol,2062,5074,2084,5096,forward,0.1495513459621136,FFREGLAFPQGEAREFPSEQTRANSPTRRELQVWGRDDNSLSETGADRQGTVSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPRVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPIFAIKKKDGNKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRAKIEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPILLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVVPLTAEAELELAENREILKEPVHGVYYDPSKDLIAELQKQGQGQWTYQIYQEPYKNLKTGKYARMRGTHTNDIKQLTEAVQKIATESIVIWGKTPKFKLPIQKETWEAWWIEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDKGRQKVVPLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLKGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQEVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFVHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED,FFREGLAFPQGEAREFPSEQTRANSPTRRELQVWGRDDNSLSETGADRQGTVSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPRVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPIFAIKKKDGNKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRAKIEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPILLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVVPLTAEAELELAENREILKEPVHGVYYDPSKDLIAELQKQGQGQWTYQIYQEPYKNLKTGKYARMRGTHTNDIKQLTEAVQKIATESIVIWGKTPKFKLPIQKETWEAWWIEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDKGRQKVVPLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLKGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQEVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFVHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAGGTCTGGCCTTCCCGCAAGGGGAGGCCAGGGAATTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACGACAACTCCCTCTCAGAAACCGGAGCCGATAGACAAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAGGAGGGCAACTAAAGGAAGCTCTATTAGACACAGGAGCAGATGATACAGTTTTAGAAGAAATGAATTTGCCAGGAAAATGGAAGCCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACTCATAGAAATCTGTGGACATAAAGCTATAGGTACAGTGTTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAAATTGGCTGCACTTTAAATTTTCCCATTAGCCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAGAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAACAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATCTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAATATTTGCCATAAAGAAGAAAGATGGTAATAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCTGCTGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATAAGGACTTCAGGAAGTATACTGCATTTACAATACCTAGCACAAACAATGAGACACCAGGGATTAGATACCAGTACAATGTGCTGCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATTTTGGAGCCTTTTAGAAAACAAAATCCAGACATAGTTATTTATCAATACATGGATGATTTATATGTAGGGTCTGACTTAGAAATAGGGCAGCATAGAGCAAAAATAGAGGAACTGAGACAACATCTATTGAAGTGGGGATTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCCGATAAATGGACAGTACAGCCTATATTGCTGCCAGAAAAAGACAGCTGGACTGTTAATGACATACAGAAGTTAGTGGGAAAATTGAACTGGGCAAGTCAGATTTACCCAGGAATCAAAGTAAGGCAGCTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAAGTGGTACCACTAACAGCAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAGATTCTAAAAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGATTTAATAGCAGAACTACAGAAGCAGGGGCAAGGCCAATGGACATATCAAATTTATCAAGAGCCATATAAAAATCTGAAAACAGGAAAGTATGCAAGAATGAGAGGTACCCACACTAATGATATAAAACAATTAACAGAGGCAGTGCAAAAAATAGCTACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAATTACCCATACAAAAGGAAACATGGGAAGCATGGTGGATAGAGTATTGGCAAGCCACCTGGATTCCTGAATGGGAGTTTGTCAATACCCCTCCCTTAGTGAAACTATGGTACCAGTTGGAAAAAGAACCCATAGTGGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGGGAAACTAAATTAGGAAAAGCAGGATATGTTACTGACAAAGGAAGACAAAAAGTTGTCCCCCTAACGGACACAACAAATCAGAAGACTGAGCTACAAGCAATTCATCTAGCTTTGCAGGATTCAGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATAAGAGTGAATCAGAACTAGTCAGTCAAATAATAGAGCAGTTAATAAAGAAGGAAAAGGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAGTTAGTCAGTGCTGGAATCAGGAAAGTACTATTTTTAGATGGAATAGATAAGGCCCAAGAAGAACATGAGAAATATCACAGTAATTGGAGAGCAATGGCTAGTGACTTTAACCTGCCACCTATAGTAGCAAAGGAAATAGTAGCCAGTTGTGACAAATGTCAGTTAAAAGGAGAAGCCATGCATGGACAAGTAGACTGTAGTCCTGGAATATGGCAGCTAGATTGTACACATCTAAAAGGAAAAATTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAAGAAACAGCATACTTTCTCTTGAAATTAGCAGGAAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTAATGTGGTTAAGGCTGCCTGTTGGTGGGCGGGGATCAAACAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGAAGTAATAGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCAGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCGTCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAATAGACATAATAGCAACAGACATACAAACCAAAGAATTACAAAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGACATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATTATCAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG -OQ092462,vif,5018,5597,5040,5619,forward,0.34375,MENRWQVMIVWQVDRMRIRTWKSLVKHHMHISRKAKNWLYRHHYESIHPRISSEVHIPLGDARLVITTYWGLLTGERDWHLGQGVSIEWRERRYRTQVDPDLADQLIHLYYFDCFSESAIRNALLGRVVSPRCEYQAGHNQVGSLQYLALTALITPKRRKPPLPSVRKLTEDRWNKPQKTKGHKGSHTMNGH,MENRWQVMIVWQVDRMRIRTWKSLVKHHMHISRKAKNWLYRHHYESIHPRISSEVHIPLGDARLVITTYWGLLTGERDWHLGQGVSIEWRERRYRTQVDPDLADQLIHLYYFDCFSESAIRNALLGRVVSPRCEYQAGHNQVGSLQYLALTALITPKRRKPPLPSVRKLTEDRWNKPQKTKGHKGSHTMNGH*,ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAAGAGTTTAGTAAAACATCATATGCATATATCAAGGAAAGCTAAGAATTGGTTGTATAGACATCACTATGAAAGCATTCATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTAGTAATAACAACATATTGGGGTCTGCTTACAGGAGAAAGAGACTGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGGGAAAGGAGATATAGAACACAAGTAGACCCTGACCTAGCAGACCAACTAATTCATCTGTATTATTTTGATTGTTTTTCAGAGTCTGCTATAAGAAATGCCTTATTAGGACGTGTAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAACCAGGTAGGATCTCTACAGTACTTGGCACTAACAGCATTAATAACACCAAAAAGGAGAAAGCCACCTTTGCCTAGTGTTAGGAAACTGACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCACAAAGGGAGCCATACAATGAATGGGCACTAG -OQ092462,vpr,5536,5830,5558,5850,forward,0.32692307692307465,MEQAPEDQGPQREPYNEWALELLEELKSEAVRHFPRIWLHGLGQHIYETYGDTWAGVEAIIRILQQLLFIHFRIGCRHSRIGINLQRRARNGSSRS,MEQAPEDQGPQREPYNEWALELLEELKSEAVRHFPRIWLHGLGQHIYETYGDTWAGVEAIIRILQQLLFIHFRIGCRHSRIGINLQRRARNGSSRS*P,ATGGAACAAGCCCCAGAAGACCAAGGGCCACAAAGGGAGCCATACAATGAATGGGCACTAGAACTTTTAGAGGAACTTAAAAGTGAAGCTGTTAGACATTTTCCTAGGATATGGCTTCATGGATTGGGACAGCATATCTATGAAACATATGGGGATACTTGGGCAGGAGTGGAAGCCATAATAAGAATTCTGCAACAACTGCTGTTTATTCATTTCAGAATTGGATGTCGACATAGCAGAATAGGCATTAATCTACAGAGGAGAGCAAGGAATGGATCCAGTAGATCCTAGCCT -OQ092462,tat_exon1,5807,6026,5830,6045,forward,0.41666666666666674,MDPVDPSLEPWKHPGSQPKTACTNCYCKKCCFHCQVCFIKKGLGISYGRKKRRQRRRASQGSETHQVSLPKQ,MDPVDPSLEPWKHPGSQPKTACTNCYCKKCCFHCQVCFIKKGLGISYGRKKRRQRRRASQGSETHQVSLPKQ*,ATGGATCCAGTAGATCCTAGCCTAGAGCCCTGGAAGCATCCAGGAAGTCAGCCTAAGACTGCTTGTACCAATTGTTATTGTAAAAAGTGCTGCTTTCATTGCCAAGTTTGTTTCATAAAAAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTTCTCAAGGCAGTGAGACTCATCAAGTTTCTCTACCAAAGCAGTAA -OQ092462,rev_exon1,5946,6024,5969,6045,forward,0.5769230769230769,MAGRSGDSDEELLKAVRLIKFLYQSS,MAGRSGDSDEELLKAVRLIKFLYQSS,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTTCTCAAGGCAGTGAGACTCATCAAGTTTCTCTACCAAAGCAGT -OQ092462,vpu,6038,6284,6061,6310,forward,0.7073170731707319,MRPLEIAAIVALVVAVLIAIVVWSIVLIEYRKILRQRKIDRIVDRIRERAEDSGNESEGDQEELSALVERGHLAPWDIDDL,MRPLEIAAIVALVVAVLIAIVVWSIVLIEYRKILRQRKIDRIVDRIRERAEDSGNESEGDQEELSALVERGHLAPWDIDDL*,ATGCGACCTTTAGAAATAGCAGCAATAGTAGCACTAGTAGTAGCAGTACTAATAGCAATAGTTGTGTGGTCTATAGTACTCATAGAATATAGGAAAATATTAAGACAAAGAAAAATAGACAGGATAGTGGATAGAATAAGAGAAAGAGCAGAAGATAGTGGAAATGAGAGTGAAGGGGATCAGGAGGAATTATCAGCACTGGTGGAGAGGGGGCACCTTGCTCCTTGGGATATTGATGATCTGTAG -OQ092462,env,6201,8844,6224,8795,forward,0.5698598130841122,MRVKGIRRNYQHWWRGGTLLLGILMICSATENLWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPSPQEVVLKNVTEKFNMWKNNMVEQMHQDIISLWDESLKPCVKLTPLCVTLNCTNATISGNATEEIKNCSFNVNTKIGGKKQKERALFYKLDVVPIDDDSTNRTNTSYRLISCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCGDKEFNGTGLCRNVSTVQCTHGIRPVVSTQLLLNGSLAEGEVVIKSENITNNVKTIIVQLNETVSINCTRPSNNTRRSIHMGPGRAFYATGEIIGDIRKAQCILNKTDWSDTLTRIAKKLHKQFHGPIAFEQSSGGDPEITMHTFNCGGEFFYCNTSALFSGTWNGTAWTNATWGNIAGNNITLQCRIKQFINRWQEVGKAMYAPPIRGEIRCSSNITGLLLTRDGGSNTTNGGENGTQIGENVTQIFRPGGGDMRDNWRSELYKYKVVKIEPLGIAPTKAKRRVVQREKRAVTFGALFLGFLGAAGSTMGAASMTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARILAVERYLRDQQLLGIWGCSGKLICTTTVPWNASWSNKTLEKIWGNMTWMEWEREIDNYTDLIYTLIEQSQNQQEKNEQELLELDKWAGLWNWFDITNWLWYIKIFIMIVGGLVGLRIVFAVLSIVNRVRQGYSPLSFQTRLPASRGPDRPEGTDEEGGERDRDRSGSLVNGFLALIWIDLRSLFLFSYLRLRDLLLIAARIVELLGRRGWEALKYWWNLLQYWSQELKNSAVSLLNAIAISVAEGTDRIIEAIQRICRAILHIPTRIRQGLERALL,MRVKGIRRNYQHWWRGGTLLLGILMICSATENLWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPSPQEVVLKNVTEKFNMWKNNMVEQMHQDIISLWDESLKPCVKLTPLCVTLNCTNATISGNATEEIKNCSFNVNTKIGGKKQKERALFYKLDVVPIDDDSTNRTNTSYRLISCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCGDKEFNGTGLCRNVSTVQCTHGIRPVVSTQLLLNGSLAEGEVVIKSENITNNVKTIIVQLNETVSINCTRPSNNTRRSIHMGPGRAFYATGEIIGDIRKAQCILNKTDWSDTLTRIAKKLHKQFHGPIAFEQSSGGDPEITMHTFNCGGEFFYCNTSALFSGTWNGTAWTNATWGNIAGNNITLQCRIKQFINRWQEVGKAMYAPPIRGEIRCSSNITGLLLTRDGGSNTTNGGENGTQIGENVTQIFRPGGGDMRDNWRSELYKYKVVKIEPLGIAPTKAKRRVVQREKRAVTFGALFLGFLGAAGSTMGAASMTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARILAVERYLRDQQLLGIWGCSGKLICTTTVPWNASWSNKTLEKIWGNMTWMEWEREIDNYTDLIYTLIEQSQNQQEKNEQELLELDKWAGLWNWFDITNWLWYIKIFIMIVGGLVGLRIVFAVLSIVNRVRQGYSPLSFQTRLPASRGPDRPEGTDEEGGERDRDRSGSLVNGFLALIWIDLRSLFLFSYLRLRDLLLIAARIVELLGRRGWEALKYWWNLLQYWSQELKNSAVSLLNAIAISVAEGTDRIIEAIQRICRAILHIPTRIRQGLERALL*DGWQGVKNEGMGCCKGKNEAN*,ATGAGAGTGAAGGGGATCAGGAGGAATTATCAGCACTGGTGGAGAGGGGGCACCTTGCTCCTTGGGATATTGATGATCTGTAGTGCCACAGAGAACTTGTGGGTCACAGTCTACTATGGGGTACCTGTGTGGAAAGAAGCAACCACCACTTTATTTTGTGCATCAGATGCCAAAGCATATGATACAGAGGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAGCCCACAAGAAGTAGTATTGAAAAATGTGACAGAAAAGTTTAATATGTGGAAAAATAACATGGTAGAACAGATGCATCAGGATATAATCAGTTTATGGGATGAAAGCCTAAAACCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCACTAATGCTACTATCAGTGGTAATGCAACAGAAGAAATAAAAAACTGCTCTTTCAATGTCAATACAAAAATAGGAGGTAAGAAGCAGAAAGAACGTGCACTTTTTTATAAACTTGATGTAGTACCAATAGATGATGATAGTACTAATAGGACTAATACCAGCTATAGGTTGATAAGTTGTAACACTTCAGTCATTACACAAGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTGGAGATAAAGAGTTCAATGGAACAGGACTATGTAGAAATGTCAGCACAGTCCAATGTACACATGGAATCAGGCCAGTAGTATCAACTCAATTGCTGTTGAATGGCAGTCTAGCAGAAGGAGAGGTAGTAATTAAATCTGAAAATATCACGAACAATGTTAAAACCATAATAGTACAGCTAAATGAAACTGTATCAATTAATTGTACAAGACCTAGCAACAATACAAGAAGAAGCATACATATGGGACCAGGGAGAGCCTTTTATGCAACAGGAGAAATAATAGGAGATATAAGGAAAGCACAGTGTATCCTGAATAAGACAGACTGGAGTGACACTTTAACAAGGATAGCTAAAAAATTACACAAGCAATTTCATGGACCAATAGCATTTGAGCAATCCTCAGGAGGGGACCCTGAAATTACAATGCACACTTTTAATTGTGGAGGGGAATTTTTCTACTGCAACACATCAGCGTTGTTTAGCGGGACCTGGAATGGTACTGCTTGGACTAATGCTACTTGGGGTAATATTGCAGGTAACAATATCACACTCCAATGCAGAATAAAACAATTTATAAACAGATGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCATCAGAGGAGAAATTAGATGTTCATCAAATATTACAGGGCTGCTATTAACAAGAGATGGTGGCAGTAACACAACAAATGGTGGCGAGAATGGGACCCAGATTGGCGAGAATGTGACCCAGATCTTCAGACCTGGAGGAGGGGATATGAGGGACAATTGGAGAAGTGAATTATACAAATATAAAGTAGTAAAAATTGAGCCATTAGGAATAGCACCCACCAAGGCAAAAAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTAACATTCGGAGCTTTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAATGACACTGACGGTACAGGCCAGACTATTATTGTCTGGTATAGTGCAACAGCAGAACAATCTGCTGAGAGCTATTGAGGCGCAACAACATCTGTTGCAACTCACAGTCTGGGGCATCAAACAGCTTCAGGCAAGAATCCTGGCTGTGGAAAGATACCTAAGGGATCAACAGCTCCTAGGGATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTACTGTGCCTTGGAATGCTAGTTGGAGTAATAAAACTCTGGAAAAAATTTGGGGGAACATGACCTGGATGGAGTGGGAGAGAGAAATTGACAATTATACAGACTTAATATACACCTTAATTGAACAATCGCAGAACCAACAAGAAAAGAATGAACAAGAATTATTGGAATTGGATAAATGGGCAGGCTTGTGGAATTGGTTTGACATAACAAACTGGCTGTGGTATATAAAAATATTCATAATGATAGTAGGAGGTTTAGTAGGTTTAAGAATAGTTTTTGCTGTGCTTTCTATAGTAAATAGAGTTAGGCAGGGATACTCACCATTATCATTCCAGACCCGCCTCCCAGCCTCGAGGGGACCCGACAGGCCCGAAGGAACCGACGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGGATCATTAGTGAACGGATTCTTAGCACTCATCTGGATCGACCTGCGGAGTCTGTTCCTCTTCAGCTACCTCCGCTTGAGAGACTTACTCTTGATTGCAGCGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAGGCCCTCAAATATTGGTGGAATCTCCTGCAGTATTGGAGTCAGGAACTAAAGAATAGTGCTGTTAGTTTGCTTAATGCTATAGCTATATCAGTAGCGGAGGGAACAGATAGGATTATAGAAGCAATACAAAGAATTTGTAGAGCTATCTTACACATACCTACAAGGATAAGACAGGGCTTAGAAAGGGCTTTGCTATAAGATGGGTGGCAAGGGGTCAAAAATGAGGGGATGGGTTGCTGTAAGGGAAAAAATGAGGCGAACTAA -OQ092462,tat_exon2,8359,8455,8376,8469,forward,0.4866666666666659,RPASQPRGDPTGPKEPTKKVERETETDPDH,RPASQPRGDPTGPKEPTKKVERETETDPDH**,AGACCCGCCTCCCAGCCTCGAGGGGACCCGACAGGCCCGAAGGAACCGACGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGGATCATTAGTGA -OQ092462,rev_exon2,8360,8636,8377,8653,forward,0.39560439560439553,DPPPSLEGTRQARRNRRRRWRERQRQIRIISERILSTHLDRPAESVPLQLPPLERLTLDCSEDCGTSGTQGVGGPQILVESPAVLESGTKE,DPPPSLEGTRQARRNRRRRWRERQRQIRIISERILSTHLDRPAESVPLQLPPLERLTLDCSEDCGTSGTQGVGGPQILVESPAVLESGTKE*,GACCCGCCTCCCAGCCTCGAGGGGACCCGACAGGCCCGAAGGAACCGACGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGGATCATTAGTGAACGGATTCTTAGCACTCATCTGGATCGACCTGCGGAGTCTGTTCCTCTTCAGCTACCTCCGCTTGAGAGACTTACTCTTGATTGCAGCGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAGGCCCTCAAATATTGGTGGAATCTCCTGCAGTATTGGAGTCAGGAACTAAAGAATAG -OQ092462,nef,8779,9406,8796,9417,forward,0.7422764227642202,MGGKGSKMRGWVAVREKMRRTKPEDEPAANGVGAASRDLEKYGALTSSNTVATNADLAWLEAQEEEEVGFPVRPQVPLRPMTYKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVHHTQGYLPDWQNYTPGPGIRYPLTFGWCFKLVPVEPDQVEEANAGENNSLLHPMSLHGIEDPEKEVLMWKFDSHLAFRHMARELHPEYYKDC,MGGKGSKMRGWVAVREKMRRTKPEDEPAANGVGAASRDLEKYGALTSSNTVATNADLAWLEAQEEEEVGFPVRPQVPLRPMTYKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVHHTQGYLPDWQNYTPGPGIRYPLTFGWCFKLVPVEPDQVEEANAGENNSLLHPMSLHGIEDPEKEVLMWKFDSHLAFRHMARELHPEYYKDC*,ATGGGTGGCAAGGGGTCAAAAATGAGGGGATGGGTTGCTGTAAGGGAAAAAATGAGGCGAACTAAGCCAGAAGATGAGCCAGCAGCAAATGGGGTGGGGGCAGCATCTCGAGACTTGGAGAAATATGGCGCACTCACAAGTAGCAATACAGTAGCTACTAATGCTGATTTAGCTTGGCTAGAAGCACAAGAGGAAGAGGAGGTGGGCTTTCCAGTCAGACCTCAAGTACCTTTAAGACCAATGACTTACAAGGGAGCTCTAGATCTCAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCCCAAAAAAGGCAAGATATCCTTGATCTGTGGGTTCACCACACACAAGGCTATCTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGATCAGATATCCCCTGACTTTTGGATGGTGCTTCAAGCTAGTACCAGTTGAGCCAGATCAGGTAGAAGAGGCCAATGCAGGAGAGAACAACAGCTTGTTACACCCTATGAGCCTGCATGGGATAGAGGACCCGGAGAAAGAAGTCTTAATGTGGAAGTTTGACAGCCACCTAGCATTCCGTCACATGGCCCGAGAGCTGCATCCGGAGTATTACAAAGACTGCTGA -OQ092464,gag,773,2282,200,1700,forward,0.38588709677419364,MGARASVLSGGELDRWERIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSKGCRQILEQLQPALQTGSEELKSLYNTVATLYCVHQKIDVKDTKEALDKIEEEQNKSKKKAQQAAADTGNNSQASQNYPIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQCTQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTTPGTIMMQRGNLRSQRKTVKCFNCGKEGHIAKNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETTTPSQKQEPIDKEMYPLASLRSLFGNDPSSQ,MGARASVLSGGELDRWERIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSKGCRQILEQLQPALQTGSEELKSLYNTVATLYCVHQKIDVKDTKEALDKIEEEQNKSKKKAQQAAADTGNNSQASQNYPIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQCTQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTTPGTIMMQRGNLRSQRKTVKCFNCGKEGHIAKNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETTTPSQKQEPIDKEMYPLASLRSLFGNDPSSQ*R*,ATGGGTGCGAGAGCGTCGGTATTAAGCGGGGGAGAATTAGATAGATGGGAAAGAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAAATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGGTTCGCAGTTAATCCTGGCCTGTTAGAAACATCAAAAGGCTGTAGACAAATATTGGAACAGCTACAGCCAGCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATATAATACAGTAGCAACCCTCTATTGTGTGCATCAAAAGATCGATGTAAAAGACACCAAGGAAGCTTTAGATAAGATAGAGGAAGAGCAAAACAAAAGTAAGAAAAAAGCACAGCAAGCAGCAGCTGACACAGGAAACAACAGCCAGGCCAGCCAAAATTACCCTATAGTGCAGAACATTCAGGGGCAAATGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCGCTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGGATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGGATGTATAGCCCTACCAGCATTCTGGACATAAGACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAAAACTCTAAGAGCCGAACAATGTACACAGGAGGTAAAAAATTGGATGACAGAAACATTATTGGTCCAAAATGCAAACCCAGATTGCAAGACTATTTTAAAAGCATTAGGACCAGCAGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCTGGCCATAAAGCAAGAGTTTTGGCAGAAGCAATGAGCCAAGTAACAACTCCAGGTACCATAATGATGCAGAGAGGCAATTTAAGGAGCCAAAGAAAGACTGTTAAGTGTTTCAACTGTGGCAAAGAAGGGCATATAGCTAAAAATTGCAGGGCTCCTAGGAAAAGGGGCTGTTGGAAATGTGGAAAAGAAGGACACCAAATGAAAGATTGCACTGAGAGACAGGCTAATTTTTTAGGGAAGATCTGGCCTTCCCACAAGGGGAGGCCAGGGAATTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAACAACTCCCTCTCAGAAGCAGGAGCCGATAGACAAAGAAATGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAG -OQ092464,pol,2068,5080,1492,4504,forward,0.1734795613160518,FFREDLAFPQGEAREFSSEQTRANSPTRRELQVWGRDNNSLSEAGADRQRNVSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMTLPGRWKPKMIGGIGGFIKVRQYDQILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTEVIPLTREAELELAENREILKEPVHGVYYDPTKDLIVEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFRLPIQRETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKDKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIDKAQDDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGGNFISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVYIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED,FFREDLAFPQGEAREFSSEQTRANSPTRRELQVWGRDNNSLSEAGADRQRNVSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMTLPGRWKPKMIGGIGGFIKVRQYDQILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTEVIPLTREAELELAENREILKEPVHGVYYDPTKDLIVEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFRLPIQRETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKDKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIDKAQDDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGGNFISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVYIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAGATCTGGCCTTCCCACAAGGGGAGGCCAGGGAATTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAACAACTCCCTCTCAGAAGCAGGAGCCGATAGACAAAGAAATGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGACATGACTTTACCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACTCGTAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTAACTCAGATTGGTTGCACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATCTGTACAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATATAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCCGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATAAAGACTTCAGGAAGTATACTGCATTTACCATACCTAGTATAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGACATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAATTAAGACAACATCTGTTGAAGTGGGGATTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGATATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAGAAAAGGACAGTTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTGAATTGGGCAAGTCAGATTTACCCAGGGATTAAAGTAAAGCAATTATGTAAACTCCTTAGGGGAACCAAGGCACTAACAGAAGTAATACCACTAACAAGAGAAGCAGAGCTAGAACTGGCAGAGAACAGGGAAATTCTAAAAGAACCAGTACATGGAGTGTATTATGACCCAACAAAAGACTTAATAGTAGAAATACAGAAGCAGGGGCAAGGCCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGAGGTGCCCACACTAATGATGTAAAACAACTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAGTTTAGACTACCCATACAAAGAGAAACATGGGAAACATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAGACTTTCTATGTAGATGGTGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAACAGAGGAAGACAAAAAGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAGTTACAAGCAATTCATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATAAAAGTGAATCAGAGTTAGTTAATCAAATAATAGAACAGTTAATAAAAAAGGACAAGGTATACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTGCTGGAATCAGGAAAGTACTATTTTTAGATGGAATAGATAAGGCCCAAGACGATCATGAGAAATATCACAGTAATTGGAGAGCAATGGCTAGTGACTTTAACCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGCCAGTTAAAAGGGGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAACTAGATTGTACACACTTAGAAGGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTCTCTTAAAATTAGCAGGAAGATGGCCAGTAAAAACAATACATACAGACAATGGCGGCAATTTCATCAGTACTACAGTTAAGGCCGCCTGCTGGTGGGCGGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATACATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAGAGAATAGTAGACATAATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATTACAAAACTTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGACCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGACATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG -OQ092464,vif,5024,5603,4448,5027,forward,0.29166666666666674,MENRWQVMIVWQVDRMRIRTWKSLVKHHMYISRKAKGWVYKHHYDSTHPRISSEVHIPLGDAKLVITTYWGLHTGERDWHLGQGVSIEWRKKRYSTQVDPGLADQLIHLYYFDCFSESAIRNAILGHIVSPSCDYQAGHNKVGSLQYLALAALITPKKIKPPLPSVKKLTEDRWNKPQKTKGHRGSHTMNGH,MENRWQVMIVWQVDRMRIRTWKSLVKHHMYISRKAKGWVYKHHYDSTHPRISSEVHIPLGDAKLVITTYWGLHTGERDWHLGQGVSIEWRKKRYSTQVDPGLADQLIHLYYFDCFSESAIRNAILGHIVSPSCDYQAGHNKVGSLQYLALAALITPKKIKPPLPSVKKLTEDRWNKPQKTKGHRGSHTMNGH*,ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGGACATGGAAAAGTTTAGTAAAACACCATATGTATATTTCAAGGAAAGCTAAGGGATGGGTTTATAAGCATCACTATGACAGTACTCATCCAAGAATAAGTTCAGAAGTTCACATCCCGCTAGGGGATGCGAAATTGGTAATAACAACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGGAAGAAGAGATATAGCACACAAGTAGACCCTGGCTTAGCAGACCAACTAATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACATATAGTTAGTCCTAGCTGTGATTATCAAGCAGGACATAACAAGGTAGGATCTCTACAGTACTTGGCACTAGCAGCATTAATAACACCAAAAAAGATAAAGCCACCTTTGCCTAGTGTTAAGAAACTGACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACACTAG -OQ092464,vpr,5542,5833,4966,5257,forward,0.20833333333333326,MEQAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHSLGQHIYETYGDTWAGVEAIIRILQQLLFIHFRIGCRHSRIGIIQRRRARNGASRS,MEQAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHSLGQHIYETYGDTWAGVEAIIRILQQLLFIHFRIGCRHSRIGIIQRRRARNGASRS*,ATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACACTAGAGCTTTTAGAGGAGCTTAAGAATGAAGCTGTTAGACACTTTCCTAGGCCATGGCTCCACAGCTTAGGGCAACATATCTATGAAACATATGGAGATACTTGGGCAGGAGTGGAAGCCATAATAAGAATTCTGCAACAACTGCTGTTTATTCATTTCAGAATTGGGTGTCGACATAGCAGAATAGGCATCATTCAACGGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAG -OQ092464,tat_exon1,5813,6032,5237,5452,forward,0.25,MEPVDPRLEPWKHPGSQPRTACTSCYCKQCCFHCQVCFITKGLGISYGRKKRRQRRRAPPDSQTHQASLSKQ,MEPVDPRLEPWKHPGSQPRTACTSCYCKQCCFHCQVCFITKGLGISYGRKKRRQRRRAPPDSQTHQASLSKQ*,ATGGAGCCAGTAGATCCTAGATTAGAGCCCTGGAAGCATCCAGGAAGTCAGCCTAGGACTGCTTGTACCTCTTGTTATTGTAAGCAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAACAAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCCAGACAGTCAGACTCATCAAGCTTCTCTATCAAAGCAGTAA -OQ092464,rev_exon1,5952,6030,5376,5452,forward,0.5769230769230769,MAGRSGDSDEELLQTVRLIKLLYQSS,MAGRSGDSDEELLQTVRLIKLLYQSS,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCCAGACAGTCAGACTCATCAAGCTTCTCTATCAAAGCAGT -OQ092464,vpu,6044,6290,5468,5708,forward,0.4265822784810127,MQPLHIAAIVALVVAIIIAIVVWSIVFIEYRKILRQRKIDRIIDRIRERAEDSGNESEGDQEELSALVEMGHCAPWDVNDL,MQPLHIAAIVALVVAIIIAIVVWSIVFIEYRKILRQRKIDRIIDRIRERAEDSGNESEGDQEELSALVEMGHCAPWDVNDL*,ATGCAACCTTTACACATAGCAGCAATAGTAGCATTAGTAGTAGCAATAATAATAGCAATAGTTGTGTGGTCTATAGTATTCATAGAATATAGGAAAATATTAAGACAAAGGAAAATAGACAGGATAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAGGGGGATCAAGAAGAATTATCAGCACTTGTGGAGATGGGGCATTGTGCTCCTTGGGATGTTAATGATCTGTAG -OQ092464,env,6207,8790,5631,8208,forward,0.5058275058275068,MRVRGIKKNYQHLWRWGIVLLGMLMICSATEKLWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVVLGNVTENFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTNYNNTNNTTSTNDTTSTTTSSGEKMKEGEIKNCSFNITTSIRDKVQKEYALFYKPDIVPIDNDNTSYRLISCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGSCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSENFSDNAKTIIVHLNESVEITCIRPNNNTRKSIPIGPGRAFYATGAIIGDIRQAHCKINKTKWNNTLDQIFKKLREQFGNKTIIFTHSSGGDPEVVTHNFNCGGEFFYCNTTKLFNSTWNETSYWKDERSNDNDTITLPCRIKQIINLWQEVGKAMYAPPIRGYIKCSSNITGLLITRDGGKNESNTTETFRPGGGNMRDNWRSELYKYKVVKIEPLGIAPTKAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASITLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKSLEQIWDNMTWMEWEREIDNYTSLIYTLIEKSQNQQEKNEQELLELDKWASLWNWFDITKWLWYIKIFIMIVGGLVGLRIVFAVLSIANRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSGPLVNGFLTIIWVDLRSLCLFSYHRLRDLLLIVTRIVELLGRRGWELLKYWWNLLQYWSQELKNSAISLLNATAIAVAEGTDRIIEVLQRAGRAFLHIPRRIRQGLERALL,MRVRGIKKNYQHLWRWGIVLLGMLMICSATEKLWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVVLGNVTENFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTNYNNTNNTTSTNDTTSTTTSSGEKMKEGEIKNCSFNITTSIRDKVQKEYALFYKPDIVPIDNDNTSYRLISCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGSCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSENFSDNAKTIIVHLNESVEITCIRPNNNTRKSIPIGPGRAFYATGAIIGDIRQAHCKINKTKWNNTLDQIFKKLREQFGNKTIIFTHSSGGDPEVVTHNFNCGGEFFYCNTTKLFNSTWNETSYWKDERSNDNDTITLPCRIKQIINLWQEVGKAMYAPPIRGYIKCSSNITGLLITRDGGKNESNTTETFRPGGGNMRDNWRSELYKYKVVKIEPLGIAPTKAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASITLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKSLEQIWDNMTWMEWEREIDNYTSLIYTLIEKSQNQQEKNEQELLELDKWASLWNWFDITKWLWYIKIFIMIVGGLVGLRIVFAVLSIANRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSGPLVNGFLTIIWVDLRSLCLFSYHRLRDLLLIVTRIVELLGRRGWELLKYWWNLLQYWSQELKNSAISLLNATAIAVAEGTDRIIEVLQRAGRAFLHIPRRIRQGLERALL*,ATGAGAGTGAGGGGGATCAAGAAGAATTATCAGCACTTGTGGAGATGGGGCATTGTGCTCCTTGGGATGTTAATGATCTGTAGTGCTACAGAAAAATTGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAAAGAAGCAACTACCACTCTATTTTGTGCATCAGATGCTAAAGCATATGATACAGAGGTACATAATGTTTGGGCTACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGTATTGGGAAATGTGACAGAGAATTTTAACATGTGGAAAAATGACATGGTAGAACAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGTCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTGAATTGCACTAATTATAATAACACCAATAATACCACTAGTACCAATGATACCACTAGTACCACTACTAGTAGCGGGGAAAAGATGAAGGAAGGAGAGATAAAAAACTGCTCTTTCAATATCACCACAAGCATAAGAGATAAGGTGCAGAAAGAATATGCACTCTTTTATAAACCTGATATAGTACCAATAGATAATGATAATACTAGTTATAGGTTGATAAGTTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTATTGTGCCCCAGCTGGTTTTGCGATTCTAAAGTGTAACGATAAGAAGTTCAATGGAACAGGATCATGTACAAATGTCAGCACAGTACAATGTACACATGGAATTAGGCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTCTAGCAGAAGAAGAGGTAGTAATTAGATCTGAAAATTTCTCAGACAATGCTAAAACCATAATAGTACATCTGAATGAATCTGTAGAAATTACTTGTATAAGACCCAACAACAATACAAGAAAAAGTATACCTATAGGACCAGGGAGAGCATTTTATGCAACAGGAGCCATAATAGGAGATATAAGACAAGCACATTGTAAAATTAATAAAACGAAATGGAATAACACTTTAGACCAGATATTTAAAAAGTTAAGAGAACAATTTGGGAATAAGACAATAATCTTTACTCACTCCTCAGGAGGGGACCCAGAAGTTGTAACGCACAATTTTAATTGTGGAGGGGAATTTTTCTACTGTAATACAACAAAACTGTTTAATAGTACTTGGAATGAGACTAGTTATTGGAAGGATGAAAGGTCAAATGACAATGACACTATCACACTCCCATGCAGAATAAAGCAAATTATAAACCTGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCATTAGAGGATACATTAAATGTTCATCAAATATCACAGGGCTGCTAATAACAAGAGATGGTGGGAAAAACGAGAGCAACACCACCGAGACCTTCAGACCTGGAGGAGGAAATATGAGGGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAAAATTGAACCATTAGGAATAGCACCCACCAAGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAATAACGCTGACGGTACAGGCCAGACTATTATTGTCTGGTATAGTGCAACAGCAAAACAATCTGCTGAGGGCTATTGAGGCGCAACAGCATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTAAAGGATCAACAGCTCCTGGGAATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCTTGGAATGCTAGTTGGAGTAATAAATCTCTGGAACAGATTTGGGATAACATGACCTGGATGGAATGGGAAAGAGAAATTGACAATTACACAAGCTTAATATACACTTTAATTGAAAAATCGCAAAACCAACAAGAAAAGAATGAACAAGAATTATTGGAATTAGATAAATGGGCAAGTTTGTGGAATTGGTTTGACATAACAAAGTGGCTGTGGTATATAAAAATATTCATAATGATAGTAGGAGGCTTGGTAGGTTTAAGAATAGTTTTTGCTGTACTTTCTATAGCGAATAGAGTTAGGCAGGGATACTCACCATTATCGTTTCAGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCAGAAGGAATCGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGGACCATTAGTGAACGGATTCTTAACAATTATCTGGGTCGACCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAACTCCTCAAATATTGGTGGAATCTCCTGCAGTATTGGAGTCAGGAACTAAAGAATAGTGCTATTAGCTTGCTTAATGCCACAGCCATAGCAGTAGCTGAGGGGACAGATAGGATTATAGAAGTATTACAAAGAGCTGGGAGAGCTTTTCTCCACATACCTAGAAGAATAAGACAGGGCTTAGAAAGGGCTTTGCTATAA -OQ092464,tat_exon2,8371,8467,7789,7882,forward,3.5,RPTSQPRGDPTGQKESKKKVERETETDPDH,RPTSQPRGDPTGQKESKKKVERETETDPDH**,AGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCAGAAGGAATCGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGGACCATTAGTGA -OQ092464,rev_exon2,8372,8648,7790,8066,forward,0.3846153846153846,DPPPSPEGTRQARRNRRRRWRERQRQIRTISERILNNYLGRPAEPVPLQLPPLERLTLDCNEDCGTSGTQGVGTPQILVESPAVLESGTKE,DPPPSPEGTRQARRNRRRRWRERQRQIRTISERILNNYLGRPAEPVPLQLPPLERLTLDCNEDCGTSGTQGVGTPQILVESPAVLESGTKE*,GACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCAGAAGGAATCGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGGACCATTAGTGAACGGATTCTTAACAATTATCTGGGTCGACCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAACTCCTCAAATATTGGTGGAATCTCCTGCAGTATTGGAGTCAGGAACTAAAGAATAG -OQ092464,nef,8791,9412,8209,8842,forward,0.3542857142857141,MGGKWSKSSVVGWPAIRERMRRAEPAADGVGAASRDLEKHGAITSSNTAATNADCAWLEAQEDEEVGFPVRPQVPLRPMTYKGAVDLSHFLKEKGGLEGLIHSQKRQDILDLWVYHTQGYFPDWQNYTPGPGIRYPLTFGWCFKLVPVEPDKVEEANEGENNSLLHPMSLHGMDDPEKEVLVWRFDSRLAFHHMARELHPEYYKDC,MGGKWSKSSVVGWPAIRERMRRAEPAADGVGAASRDLEKHGAITSSNTAATNADCAWLEAQEDEEVGFPVRPQVPLRPMTYKGAVDLSHFLKEKGGLEGLIHSQKRQDILDLWVYHTQGYFPDWQNYTPGPGIRYPLTFGWCFKLVPVEPDKVEEANEGENNSLLHPMSLHGMDDPEKEVLVWRFDSRLAFHHMARELHPEYYKDC*,ATGGGTGGTAAGTGGTCAAAGAGTAGTGTGGTTGGATGGCCTGCTATAAGGGAAAGAATGAGACGAGCTGAGCCAGCAGCAGATGGGGTGGGAGCAGCATCTCGAGACCTGGAAAAACATGGAGCAATCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGTGCCTGGCTAGAAGCACAAGAGGATGAGGAGGTGGGTTTTCCAGTCAGGCCTCAGGTACCTTTAAGACCAATGACTTACAAGGGAGCTGTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCACTCCCAAAAAAGACAAGATATCCTTGATCTGTGGGTCTACCACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGATCAGGTATCCACTGACCTTTGGATGGTGCTTCAAGCTAGTACCAGTTGAGCCAGATAAGGTAGAAGAGGCCAATGAAGGAGAGAACAACAGCTTGTTACACCCTATGAGCCTGCATGGGATGGATGACCCAGAGAAAGAAGTGTTAGTATGGAGGTTTGACAGTCGCCTGGCATTTCATCACATGGCCCGAGAGCTGCATCCGGAGTACTACAAGGACTGCTGA -OQ092467,gag,808,2308,789,2292,forward,0.24380000000000002,MGARASVLSGGELDKWEKIRLRPGGKKQYKLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPALQTGSEEFRSLYNTVATLYCVHQKIEVKDTKEALEKIEEEQNQSKKKAAAAAADTGNRSQVSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVIEEKAFSPEVIPMFTALSEGATPQDLNTMLNTIGGHQAAMQMLKETINEEAAEWDRLHPVQAGPVAPGQMREPRGSDIAGTTSNLQEQIGWMTHNPPIPVGDIYKRWIILGLNKIVRMYSPVSILDIKQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSTVMMQRGNFRNQRKTVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSKPEPTAPPEESFRFGEETTTPSQKQGPIDKELYPLASLKSLFGNDPSSQ,MGARASVLSGGELDKWEKIRLRPGGKKQYKLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPALQTGSEEFRSLYNTVATLYCVHQKIEVKDTKEALEKIEEEQNQSKKKAAAAAADTGNRSQVSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVIEEKAFSPEVIPMFTALSEGATPQDLNTMLNTIGGHQAAMQMLKETINEEAAEWDRLHPVQAGPVAPGQMREPRGSDIAGTTSNLQEQIGWMTHNPPIPVGDIYKRWIILGLNKIVRMYSPVSILDIKQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSTVMMQRGNFRNQRKTVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSKPEPTAPPEESFRFGEETTTPSQKQGPIDKELYPLASLKSLFGNDPSSQ*,ATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAGAATTAGATAAATGGGAAAAAATTCGGTTAAGGCCAGGAGGAAAAAAACAATACAAATTAAAACATCTAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTTAATCCTGGCCTTCTAGAGACATCAGAAGGGTGTAGACAAATACTGGGACAGCTACAACCAGCTCTTCAGACAGGATCAGAAGAATTTAGATCATTATATAATACAGTAGCAACCCTCTATTGTGTGCATCAAAAGATAGAGGTAAAAGACACCAAGGAAGCTTTAGAGAAAATAGAGGAAGAGCAAAACCAAAGTAAGAAAAAAGCAGCAGCTGCAGCAGCTGACACAGGAAACAGAAGCCAGGTCAGCCAAAATTACCCTATAGTGCAGAACCTCCAGGGGCAAATGGTACATCAGCCTTTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAATAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTACAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAATAGGTGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATTAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCAGGCAGGGCCTGTTGCACCAGGCCAAATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTAACCTTCAGGAACAAATAGGATGGATGACACATAATCCACCTATCCCAGTAGGAGATATCTATAAAAGATGGATAATTCTGGGGTTAAATAAAATAGTAAGAATGTATAGCCCTGTCAGTATTCTGGATATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAAAACTCTGAGAGCCGAGCAAGCAACACAGGAAGTAAAGAATTGGATGACAGAAACTTTGCTGGTCCAAAATGCAAATCCAGATTGTAAGACTATTTTAAAAGCATTAGGACCAGCAGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGGGGACCAGGCCACAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAACAAATTCAACTGTAATGATGCAGAGAGGCAATTTTAGGAATCAAAGAAAGACAGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCATATAGCAAGAAATTGCAGGGCCCCTAGAAAAAAGGGCTGTTGGAAATGTGGAAAAGAAGGGCACCAAATGAAAGATTGTACTGAGAGACAGGCTAATTTTTTAGGGAAGATCTGGCCTTCCCACAAGGGGAGGCCAGGGAATTTTCTTCAGAGCAAACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAACAACTCCCTCTCAGAAGCAGGGGCCGATAGACAAGGAACTGTATCCTTTAGCTTCCCTCAAATCACTCTTTGGCAACGACCCCTCGTCACAATAA -OQ092467,pol,2100,5112,2084,5096,forward,0.14356929212362912,FFREDLAFPQGEAREFSSEQTRANSPTRRELQVWGRDNNSLSEAGADRQGTVSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMNLPGKWKPKMIGGIGGFIKVRQYDQILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTRILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLKWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIKLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTAEAELELAENREILKEPVHGVYYDPTKDLIAELQKQGQSQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIAIESIVIWGKTPKFKLPIQKETWETWWTDYWQATWIPDWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETRSGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSSGIRKILFLDGITKAQDDHERYHSNWRAMASDFNLPPIIAKEIVASCDKCQLKGEATHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSAAVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVREQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED,FFREDLAFPQGEAREFSSEQTRANSPTRRELQVWGRDNNSLSEAGADRQGTVSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMNLPGKWKPKMIGGIGGFIKVRQYDQILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTRILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLKWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIKLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTAEAELELAENREILKEPVHGVYYDPTKDLIAELQKQGQSQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIAIESIVIWGKTPKFKLPIQKETWETWWTDYWQATWIPDWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETRSGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSSGIRKILFLDGITKAQDDHERYHSNWRAMASDFNLPPIIAKEIVASCDKCQLKGEATHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSAAVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVREQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAGATCTGGCCTTCCCACAAGGGGAGGCCAGGGAATTTTCTTCAGAGCAAACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAACAACTCCCTCTCAGAAGCAGGGGCCGATAGACAAGGAACTGTATCCTTTAGCTTCCCTCAAATCACTCTTTGGCAACGACCCCTCGTCACAATAAAAATAGGGGGGCAGCTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGATATGAATTTACCAGGAAAATGGAAACCAAAAATGATAGGAGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACTCGTAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGATTGGCTGTACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGATAGTACTAAATGGAGAAAGTTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCGCATCCTGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTAGATGTGGGTGATGCCTATTTTTCAATTCCCTTAGATAAAGACTTCAGGAAGTACACTGCATTTACCATACCTAGTACAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAGGATATTAGAACCTTTTAGAAAACAAAATCCAGACATAGTTATCTATCAATACATGGATGATTTGTATGTGGGATCTGACTTAGAAATAGGACAGCATAGAACAAAAATAGAGGAACTGAGACAACATCTGTTGAAGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAAAGCTGCCAGAAAAAGATAGCTGGACTGTCAATGACATCCAGAAGTTAGTGGGAAAATTGAATTGGGCAAGTCAGATTTATGCAGGAATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACTAAAGCACTAACAGAAGTAGTACCACTAACAGCAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAGATTCTAAAAGAACCGGTACATGGAGTGTATTATGACCCAACGAAAGACCTAATAGCAGAACTACAGAAGCAGGGGCAAAGTCAATGGACATATCAAATTTATCAAGAACCATTTAAAAATCTGAAAACAGGAAAGTATGCAAGAATGAGGGGTGCCCACACTAATGATGTGAAACAATTAACAGAGGCAGTGCAAAAAATAGCCATAGAAAGCATAGTAATATGGGGAAAGACCCCTAAATTTAAATTACCTATACAAAAAGAAACATGGGAAACATGGTGGACAGACTATTGGCAAGCCACCTGGATTCCTGATTGGGAGTTTGTCAATACCCCTCCCTTAGTAAAATTATGGTACCAGTTAGAAAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACTAGATCAGGCAAAGCAGGATATGTTACTGATAGAGGAAGACAAAAGGTTGTCCCCCTAACAGACACAACAAACCAGAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCAGGATTAGAAGTAAACATAGTGACAGACTCACAATATGCACTAGGAATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAGTCAAATAATAGAGCAGTTAATAAAGAAGGAAAAGGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTTCTGGAATCAGGAAGATACTATTTTTAGATGGAATAACTAAGGCCCAAGATGATCATGAGAGATACCACAGCAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTATAATAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGAGAAGCCACGCATGGACAAGTAGACTGCAGTCCAGGAATATGGCAACTAGATTGTACGCATTTAGAAGGAAAAATTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAAGAAACAGCATACTTTCTCTTAAAACTAGCAGGAAGATGGCCAGTAAAGACAGTACATACAGATAATGGCAGCAATTTCACCAGTGCTGCGGTTAAGGCCGCCTGTTGGTGGGCGGGGATCAAGCAGGAATTTGGTATTCCCTACAATCCCCAAAGTCAAGGAGTCATAGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAAGTAAGAGAGCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAATAGACATAATAGCAACAGACATACAAACTAAAGAATTACAGAAACAAATCACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGACCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGACATAAAAGTAGTGCCAAGAAGAAAGGCAAAGATCATTAGAGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG -OQ092467,vif,5056,5644,5040,5619,forward,0.43229166666666674,MENRWQVMIVWQVDRMRIRTWNSLVKHHIHVSKKAKGWVYRHHYESTHPRISSEVHIPLGEARLVIATYWGLHTGERDWHLGQGVSIEWREKKYITQVDPDLADQLIHLHYFDCFSESAIRNAIVGRLVSPQCEYQTGHNKVGSLQYLALVALITPKKRKPPLPSVRKLTEDRWNKPQKTKDHRGSHIMSGH,MENRWQVMIVWQVDRMRIRTWNSLVKHHIHVSKKAKGWVYRHHYESTHPRISSEVHIPLGEARLVIATYWGLHTGERDWHLGQGVSIEWREKKYITQVDPDLADQLIHLHYFDCFSESAIRNAIVGRLVSPQCEYQTGHNKVGSLQYLALVALITPKKRKPPLPSVRKLTEDRWNKPQKTKDHRGSHIMSGH*SF*,ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATACATGTCTCAAAGAAAGCTAAGGGATGGGTTTATAGACACCACTATGAAAGCACCCATCCAAGAATAAGTTCAGAAGTACATATCCCGCTAGGGGAAGCTAGATTAGTAATAGCAACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCACTTGGGTCAGGGAGTCTCCATAGAATGGAGGGAAAAGAAATATATCACACAAGTAGACCCTGACCTAGCAGACCAACTAATTCATCTGCATTATTTTGATTGTTTTTCAGAGTCTGCTATAAGAAATGCCATAGTAGGACGTTTAGTTAGCCCTCAGTGTGAATATCAAACAGGACATAACAAGGTAGGATCTCTACAGTACTTGGCACTAGTAGCATTAATAACGCCAAAAAAGAGAAAGCCACCTTTGCCTAGTGTTAGGAAATTGACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGACCACAGAGGGAGCCATATAATGAGTGGACACTAGAGCTTTTAG -OQ092467,vpr,5574,5868,5558,5850,forward,0.4807692307692313,MEQAPEDQGPQREPYNEWTLELLEELKSEAVRHFPRIWLHNLGQYIYATYGDTWTGVEALIRILQQLLFIHFRIGCQHSRIGITRQRRARNGASRS,MEQAPEDQGPQREPYNEWTLELLEELKSEAVRHFPRIWLHNLGQYIYATYGDTWTGVEALIRILQQLLFIHFRIGCQHSRIGITRQRRARNGASRS*T,ATGGAACAAGCCCCAGAAGACCAAGGACCACAGAGGGAGCCATATAATGAGTGGACACTAGAGCTTTTAGAGGAACTTAAGAGTGAAGCTGTTAGACATTTTCCTAGGATATGGCTCCATAACTTAGGACAATACATCTATGCAACTTATGGGGATACTTGGACAGGAGTGGAAGCTTTAATAAGAATTCTGCAACAACTGCTGTTTATTCATTTCAGAATTGGATGTCAACATAGCAGAATAGGCATTACTCGACAGAGGAGAGCAAGGAATGGAGCCAGTAGATCCTAGACT -OQ092467,tat_exon1,5845,6064,5830,6045,forward,0.29166666666666674,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRPPQNSETHQAALSKQ,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRPPQNSETHQAALSKQ*,ATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCATCCAGGAAGTCAGCCTAAGACTCCTTGTACCAATTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTCTGTTTCATAAAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGACCTCCTCAAAACAGTGAGACTCATCAAGCAGCTCTATCAAAGCAGTAA -OQ092467,rev_exon1,5984,6065,5969,6045,forward,0.6346153846153846,MAGRSGDSDEDLLKTVRLIKQLYQSSK,MAGRSGDSDEDLLKTVRLIKQLYQSSK,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGACCTCCTCAAAACAGTGAGACTCATCAAGCAGCTCTATCAAAGCAGTAAG -OQ092467,vpu,6076,6340,6061,6310,forward,0.5439024390243903,MQPLVILAIVALVVAAIIAIVVWTIVLIEYRKILRQRKIDSIINRIRERAEDSGNESEGDQEELSALVEMGHHVEMGHHAPWNVDDL,MQPLVILAIVALVVAAIIAIVVWTIVLIEYRKILRQRKIDSIINRIRERAEDSGNESEGDQEELSALVEMGHHVEMGHHAPWNVDDL*,ATGCAACCCTTAGTAATATTAGCAATAGTAGCATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGACCATAGTGTTAATAGAATATAGGAAAATATTAAGACAAAGAAAGATAGATAGCATAATTAATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGAGATCAGGAAGAATTGTCGGCACTTGTGGAGATGGGGCACCATGTGGAAATGGGGCACCATGCTCCTTGGAATGTTGATGATCTGTAG -OQ092467,env,6239,8807,6224,8795,forward,0.49988317757009404,MRVKEIRKNCRHLWRWGTMWKWGTMLLGMLMICSAKEQLWVTVYYGVPVWKEATTTLFCASNAKAYDPEVHNVWATHACVPTDPNPQEVPLENVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVILNCTNVNVTTNNNSSSEEQMEVGEIKNCSFNIATRIKNKIKKEYALFNRLDVVPIEDDNTSYMLINCNTSVTTQACPKVTFEPIPIHYCAPAGFAILKCNDKKFNGTGPCNNVSTVQCTHGIKPVVSTQLLLNGSLAEEEIVVRSENFTNNAKTIIVQLNKTIEINCIRPNNNTRKSISLRPGQAIYATEDIIGNIRQAHCNIRRKDWDKALEQVVAKLREQFKNKTIVFNQSSGGDPEIVMHSFNCAGEFFYCNTTKLFNSTWNVNNTRNNTTDNSTITLPCRIKQIINRWQEVGKAMYAPPIKGQIKCSSNITGLLLTRDGGVREDNAPEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQRGKRAVTLGAMFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLRAIEAQQHMLQLTVWGIKQLQARVLAVERYLQDQQLLGIWGCSGKLICTTAVPWNTSWSNKSLEKIWKNMTWMEWEKEINNYTRTIYTLIEESQNQQEKNEQELLELDKWASLWNWFDITNWLWYIKIFIMIVGGIVGLRIVFTVLSIVNRVRQGYSPLSFQTRFPAPRGPDRPEGTEEEGGERDRDRSGQLVNGFFALIWDDLQSLCLFSYRRLRDLLLIVARIVELLGHRGWEALKYWWNLLQYWSQELKKSAVSLLNATAIAVAEGTDRVIEVVQRIGRAILHIPRRIRQGLERALL,MRVKEIRKNCRHLWRWGTMWKWGTMLLGMLMICSAKEQLWVTVYYGVPVWKEATTTLFCASNAKAYDPEVHNVWATHACVPTDPNPQEVPLENVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVILNCTNVNVTTNNNSSSEEQMEVGEIKNCSFNIATRIKNKIKKEYALFNRLDVVPIEDDNTSYMLINCNTSVTTQACPKVTFEPIPIHYCAPAGFAILKCNDKKFNGTGPCNNVSTVQCTHGIKPVVSTQLLLNGSLAEEEIVVRSENFTNNAKTIIVQLNKTIEINCIRPNNNTRKSISLRPGQAIYATEDIIGNIRQAHCNIRRKDWDKALEQVVAKLREQFKNKTIVFNQSSGGDPEIVMHSFNCAGEFFYCNTTKLFNSTWNVNNTRNNTTDNSTITLPCRIKQIINRWQEVGKAMYAPPIKGQIKCSSNITGLLLTRDGGVREDNAPEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQRGKRAVTLGAMFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLRAIEAQQHMLQLTVWGIKQLQARVLAVERYLQDQQLLGIWGCSGKLICTTAVPWNTSWSNKSLEKIWKNMTWMEWEKEINNYTRTIYTLIEESQNQQEKNEQELLELDKWASLWNWFDITNWLWYIKIFIMIVGGIVGLRIVFTVLSIVNRVRQGYSPLSFQTRFPAPRGPDRPEGTEEEGGERDRDRSGQLVNGFFALIWDDLQSLCLFSYRRLRDLLLIVARIVELLGHRGWEALKYWWNLLQYWSQELKKSAVSLLNATAIAVAEGTDRVIEVVQRIGRAILHIPRRIRQGLERALL*,ATGAGAGTGAAGGAGATCAGGAAGAATTGTCGGCACTTGTGGAGATGGGGCACCATGTGGAAATGGGGCACCATGCTCCTTGGAATGTTGATGATCTGTAGTGCTAAAGAACAATTGTGGGTCACAGTTTATTATGGGGTACCTGTGTGGAAAGAAGCAACCACCACTTTATTTTGTGCATCAAATGCTAAAGCATATGACCCAGAGGTGCATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCTAACCCACAAGAAGTACCATTGGAAAATGTGACAGAAAATTTTAATATGTGGAAAAATAACATGGTAGAACAGATGCATGAGGACATAATCAGTTTATGGGATCAAAGCTTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTATTTTAAATTGCACTAATGTGAATGTTACTACTAACAATAATAGTAGTAGTGAGGAACAGATGGAGGTAGGAGAAATAAAAAACTGCTCTTTCAATATTGCCACAAGAATAAAAAATAAGATAAAGAAAGAATATGCACTTTTTAATAGACTTGATGTAGTACCAATAGAGGATGATAATACAAGCTATATGTTGATAAATTGTAATACCTCAGTCACTACACAGGCCTGTCCAAAGGTAACCTTTGAACCAATTCCCATACATTATTGTGCCCCGGCTGGTTTTGCGATACTAAAATGTAATGATAAAAAGTTCAATGGAACAGGACCATGTAACAATGTCAGCACAGTACAATGTACACATGGAATTAAGCCAGTAGTGTCAACTCAACTGCTGTTAAATGGTAGTCTAGCAGAAGAAGAGATAGTAGTTAGATCTGAAAATTTCACGAACAATGCTAAAACCATAATAGTACAGCTGAATAAAACTATAGAAATTAATTGTATAAGACCCAACAATAATACAAGAAAAAGTATATCTTTAAGACCGGGGCAAGCAATTTATGCAACAGAAGACATAATAGGAAATATAAGACAAGCACATTGTAACATTAGGAGAAAAGACTGGGATAAAGCTTTAGAACAGGTAGTTGCAAAATTAAGAGAACAATTTAAGAATAAAACAATAGTCTTTAATCAATCCTCAGGAGGAGACCCAGAAATTGTAATGCATAGTTTTAATTGTGCAGGGGAATTTTTCTACTGTAACACAACAAAGCTGTTTAATAGTACTTGGAATGTTAATAACACTCGGAATAATACTACTGATAATAGCACCATCACTCTCCCGTGCAGAATAAAACAAATTATAAACAGATGGCAGGAAGTAGGAAAAGCAATGTATGCTCCTCCCATCAAAGGGCAAATTAAATGTTCATCAAATATTACAGGGTTATTATTAACAAGAGATGGTGGTGTCCGCGAGGACAACGCCCCTGAGATCTTTAGACCTGGAGGAGGAGATATGAGGGATAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAAAATTGAGCCATTAGGAGTGGCACCCACCAAGGCAAAGAGAAGAGTGGTGCAAAGAGGAAAAAGAGCAGTAACGCTGGGAGCTATGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAATGACGCTGACGGTACAGGCCAGGCAATTATTGTCTGGTATAGTGCAGCAGCAGAACAATCTGCTGAGGGCTATTGAGGCGCAACAGCATATGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACTTACAGGATCAACAGCTCCTAGGGATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTACCTTGGAATACTAGTTGGAGTAATAAATCTTTGGAAAAGATTTGGAAAAACATGACCTGGATGGAGTGGGAGAAAGAAATTAACAATTACACAAGGACAATATACACCTTAATTGAAGAATCGCAAAACCAGCAAGAAAAGAATGAACAGGAATTATTGGAATTGGATAAGTGGGCAAGTTTGTGGAATTGGTTTGACATAACAAACTGGCTGTGGTATATAAAAATATTCATCATGATAGTAGGAGGTATAGTAGGGTTAAGAATAGTTTTTACTGTGCTTTCTATAGTGAATAGAGTTAGGCAGGGATATTCACCATTGTCATTCCAGACCCGCTTCCCAGCTCCGAGGGGACCAGACAGGCCCGAAGGAACAGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGGGCAATTAGTGAACGGATTCTTTGCGCTTATCTGGGACGACCTGCAGAGCCTGTGCCTCTTCAGCTACCGCCGCTTGAGAGACTTACTCTTGATTGTAGCGAGGATTGTGGAACTTCTGGGACACAGGGGGTGGGAGGCCCTCAAATATTGGTGGAATCTCCTGCAGTACTGGAGTCAGGAACTAAAGAAGAGTGCTGTTAGTTTGCTTAATGCCACAGCTATAGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAAGAATTGGTAGAGCTATTCTCCACATCCCTAGAAGAATAAGACAGGGCTTAGAAAGGGCTTTGCTATAA -OQ092467,tat_exon2,8388,8484,8376,8469,forward,0.886666666666666,RPASQLRGDQTGPKEQKKKVERETETDPGN,RPASQLRGDQTGPKEQKKKVERETETDPGN**,AGACCCGCTTCCCAGCTCCGAGGGGACCAGACAGGCCCGAAGGAACAGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGGGCAATTAGTGA -OQ092467,rev_exon2,8389,8674,8377,8653,forward,0.38351648351648326,DPLPSSEGTRQARRNRRRRWRERQRQIRAISERILCAYLGRPAEPVPLQLPPLERLTLDCSEDCGTSGTQGVGGPQILVESPAVLESGTKEECC,DPLPSSEGTRQARRNRRRRWRERQRQIRAISERILCAYLGRPAEPVPLQLPPLERLTLDCSEDCGTSGTQGVGGPQILVESPAVLESGTKEECC*,GACCCGCTTCCCAGCTCCGAGGGGACCAGACAGGCCCGAAGGAACAGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGGGCAATTAGTGAACGGATTCTTTGCGCTTATCTGGGACGACCTGCAGAGCCTGTGCCTCTTCAGCTACCGCCGCTTGAGAGACTTACTCTTGATTGTAGCGAGGATTGTGGAACTTCTGGGACACAGGGGGTGGGAGGCCCTCAAATATTGGTGGAATCTCCTGCAGTACTGGAGTCAGGAACTAAAGAAGAGTGCTGTTAG -OQ092467,nef,8808,9417,8796,9417,forward,0.6048780487804808,MGGKWSKCSLVGWPAIRERMRRAEPAPAAEGVGAASRDLEKHGALTTSNTAANNAACAWLEAQEEEEVGFPVRPQVPLRPMTYKGAMDLGHFLKEKGGLEGLIYSPKRQEILDLWVYHTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPDEGENSCLLHPMNQHGADDTEREVLMWKFDSSLAFHHKARELHPEYYKNC,MGGKWSKCSLVGWPAIRERMRRAEPAPAAEGVGAASRDLEKHGALTTSNTAANNAACAWLEAQEEEEVGFPVRPQVPLRPMTYKGAMDLGHFLKEKGGLEGLIYSPKRQEILDLWVYHTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPDEGENSCLLHPMNQHGADDTEREVLMWKFDSSLAFHHKARELHPEYYKNC*,ATGGGTGGCAAGTGGTCAAAATGTAGTCTGGTTGGATGGCCTGCTATAAGGGAAAGAATGAGACGAGCTGAGCCAGCTCCAGCAGCAGAAGGGGTGGGAGCAGCATCTCGAGACTTGGAAAAACATGGAGCACTCACAACTAGTAATACAGCAGCTAATAATGCTGCTTGTGCCTGGCTGGAAGCACAAGAGGAGGAAGAGGTGGGGTTTCCAGTCAGACCTCAGGTACCTTTAAGACCAATGACTTACAAAGGAGCTATGGATCTTGGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCCCCAAAAAGACAAGAAATCCTTGATCTGTGGGTCTACCACACACAAGGCTACTTCCCTGATTGGCAGAACTATACACCAGGGCCAGGGACTAGATATCCATTAACCTTTGGATGGTGCTTCAAGCTAGTACCAGTTGAGCCAGATGAAGGAGAGAATAGCTGTTTGCTACACCCGATGAACCAGCATGGGGCAGATGACACAGAAAGAGAAGTATTAATGTGGAAGTTTGACAGCAGCCTAGCATTTCATCACAAGGCCCGAGAGCTGCATCCGGAGTACTACAAAAACTGCTGA +KX505501.1,env,0,1824,6224,8795,forward,0.7624372207948004,MGARASVLSGGELDRWEKIRLRPGGNKRYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPTLKTGSEELKSLYNTIAVLYCVHQKIDVKDTKEALDKIEEEQNKIRKQAQQTAAAGSSSQVSHNYPVVQNHQGQMVYQALSPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPSHKARVLAEAMSQMTNSATVMMQKGNFRNQRKTVKCFNCGKEGHIARNCRAPRKKGCWKCGREGHQMKDCTERQANFVGKIWPSHKGRPGNFLQNRPEPTAPPAESFRFGEETPTRCIRSTTRTADTELFTRDFPLGTFQ,GLSG*TRSEPGSSLAN*GTHCLSLNKACLECFK*CVPVCCVTLVTRDPSDPFSQCGKSLAVAPEQGPESERETRGALSTQDSAC*ARAARGEGRRLVSTPKIF*LAEARRREMGARASVLSGGELDRWEKIRLRPGGNKRYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPTLKTGSEELKSLYNTIAVLYCVHQKIDVKDTKEALDKIEEEQNKIRKQAQQTAAAGSSSQVSHNYPVVQNHQGQMVYQALSPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPSHKARVLAEAMSQMTNSATVMMQKGNFRNQRKTVKCFNCGKEGHIARNCRAPRKKGCWKCGREGHQMKDCTERQANFVGKIWPSHKGRPGNFLQNRPEPTAPPAESFRFGEETPTRCIRSTTRTADTELFTRDFPLGTFQ*,GGTCTCTCTGGTTAGACCAGATCTGAGCCTGGGAGCTCTCTGGCTAACTAGGGAACCCACTGCTTAAGCCTCAATAAAGCTTGCCTTGAGTGCTTCAAGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGGTAACTAGAGATCCCTCAGACCCTTTTAGTCAGTGTGGAAAATCTCTAGCAGTGGCGCCCGAACAGGGACCTGAAAGCGAAAGGGAAACCAGAGGAGCTCTCTCGACGCAGGACTCGGCTTGCTGAGCGCGCGCAGCAAGAGGCGAGGGGCGGCGACTGGTGAGTACGCCGAAAATTTTTTGACTAGCGGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAGAATTGGATAGATGGGAAAAAATTCGGCTAAGGCCAGGAGGAAATAAAAGATATAAACTAAAACATATAGTATGGGCAAGCAGAGAGCTAGAACGATTCGCAGTTAATCCTGGCCTGCTAGAAACATCAGAAGGCTGTAGACAAATACTGGGACAGCTACAACCGACTCTTAAGACAGGATCAGAAGAACTTAAGTCTTTGTATAATACAATAGCAGTCCTCTATTGTGTACATCAAAAAATAGATGTGAAAGACACCAAGGAAGCCTTAGACAAGATAGAAGAAGAGCAAAACAAAATTAGGAAACAAGCACAGCAAACCGCAGCTGCAGGAAGTAGCAGTCAGGTCAGCCACAATTACCCTGTAGTGCAGAATCATCAGGGGCAAATGGTATATCAGGCCCTGTCACCAAGAACTTTAAATGCATGGGTAAAAGTAATAGAGGAAAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGACTTAAACACCATGCTAAATACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATTAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGATGACAAATAATCCACCTATCCCAGTAGGAGAGATTTATAAAAGATGGATAATCCTAGGGTTAAATAAAATAGTAAGAATGTATAGCCCTGTCAGCATTCTGGACATAAGACAAGGACCAAAGGAACCTTTTAGAGACTATGTAGACCGGTTCTATAAAACCCTAAGAGCCGAACAAGCCACACAGGAAGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAGAATGCGAACCCAGATTGTAAAACTATTTTAAAAGCATTAGGACCAGCAGCCACACTAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCCAGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAATGACAAATTCAGCTACAGTAATGATGCAGAAAGGCAATTTTAGGAACCAAAGAAAAACTGTTAAGTGCTTCAATTGTGGCAAAGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGAAAAAAGGGCTGTTGGAAATGTGGAAGGGAAGGACATCAAATGAAAGACTGTACTGAGAGACAGGCTAATTTTGTAGGGAAAATCTGGCCTTCCCACAAGGGAAGGCCGGGGAATTTCCTTCAGAACAGACCAGAGCCAACAGCCCCACCAGCAGAGAGCTTCAGGTTTGGGGAAGAGACACCAACTAGATGCATCCGGAGTACTACAAGGACTGCTGACACTGAGCTTTTCACAAGGGACTTTCCGCTGGGGACTTTCCAGTAG +KX505501.1,gag,336,1824,789,2292,forward,0.3687639991855035,MGARASVLSGGELDRWEKIRLRPGGNKRYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPTLKTGSEELKSLYNTIAVLYCVHQKIDVKDTKEALDKIEEEQNKIRKQAQQTAAAGSSSQVSHNYPVVQNHQGQMVYQALSPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPSHKARVLAEAMSQMTNSATVMMQKGNFRNQRKTVKCFNCGKEGHIARNCRAPRKKGCWKCGREGHQMKDCTERQANFVGKIWPSHKGRPGNFLQNRPEPTAPPAESFRFGEETPTRCIRSTTRTADTELFTRDFPLGTFQ,MGARASVLSGGELDRWEKIRLRPGGNKRYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPTLKTGSEELKSLYNTIAVLYCVHQKIDVKDTKEALDKIEEEQNKIRKQAQQTAAAGSSSQVSHNYPVVQNHQGQMVYQALSPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPSHKARVLAEAMSQMTNSATVMMQKGNFRNQRKTVKCFNCGKEGHIARNCRAPRKKGCWKCGREGHQMKDCTERQANFVGKIWPSHKGRPGNFLQNRPEPTAPPAESFRFGEETPTRCIRSTTRTADTELFTRDFPLGTFQ*,ATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAGAATTGGATAGATGGGAAAAAATTCGGCTAAGGCCAGGAGGAAATAAAAGATATAAACTAAAACATATAGTATGGGCAAGCAGAGAGCTAGAACGATTCGCAGTTAATCCTGGCCTGCTAGAAACATCAGAAGGCTGTAGACAAATACTGGGACAGCTACAACCGACTCTTAAGACAGGATCAGAAGAACTTAAGTCTTTGTATAATACAATAGCAGTCCTCTATTGTGTACATCAAAAAATAGATGTGAAAGACACCAAGGAAGCCTTAGACAAGATAGAAGAAGAGCAAAACAAAATTAGGAAACAAGCACAGCAAACCGCAGCTGCAGGAAGTAGCAGTCAGGTCAGCCACAATTACCCTGTAGTGCAGAATCATCAGGGGCAAATGGTATATCAGGCCCTGTCACCAAGAACTTTAAATGCATGGGTAAAAGTAATAGAGGAAAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGACTTAAACACCATGCTAAATACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATTAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGATGACAAATAATCCACCTATCCCAGTAGGAGAGATTTATAAAAGATGGATAATCCTAGGGTTAAATAAAATAGTAAGAATGTATAGCCCTGTCAGCATTCTGGACATAAGACAAGGACCAAAGGAACCTTTTAGAGACTATGTAGACCGGTTCTATAAAACCCTAAGAGCCGAACAAGCCACACAGGAAGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAGAATGCGAACCCAGATTGTAAAACTATTTTAAAAGCATTAGGACCAGCAGCCACACTAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCCAGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAATGACAAATTCAGCTACAGTAATGATGCAGAAAGGCAATTTTAGGAACCAAAGAAAAACTGTTAAGTGCTTCAATTGTGGCAAAGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGAAAAAAGGGCTGTTGGAAATGTGGAAGGGAAGGACATCAAATGAAAGACTGTACTGAGAGACAGGCTAATTTTGTAGGGAAAATCTGGCCTTCCCACAAGGGAAGGCCGGGGAATTTCCTTCAGAACAGACCAGAGCCAACAGCCCCACCAGCAGAGAGCTTCAGGTTTGGGGAAGAGACACCAACTAGATGCATCCGGAGTACTACAAGGACTGCTGACACTGAGCTTTTCACAAGGGACTTTCCGCTGGGGACTTTCCAGTAG +KX505501.1,vif,1306,1927,5040,5619,forward,0.7758782995067214,MRTQIVKLF,MRTQIVKLF*KH*DQQPH*KK**QHAREWEDPAIKQEFWLKQ*AK*QIQLQ**CRKAILGTKEKLLSASIVAKKGT*PEIAGPLEKRAVGNVEGKDIK*KTVLRDRLIL*GKSGLPTREGRGISFRTDQSQQPHQQRASGLGKRHQLDASGVLQGLLTLSFSQGTFRWGLSSRGVAWAGLGSGEPSDAAYKQLLSACTRSLWLDQI*,ATGCGAACCCAGATTGTAAAACTATTTTAAAAGCATTAGGACCAGCAGCCACACTAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCCAGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAATGACAAATTCAGCTACAGTAATGATGCAGAAAGGCAATTTTAGGAACCAAAGAAAAACTGTTAAGTGCTTCAATTGTGGCAAAGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGAAAAAAGGGCTGTTGGAAATGTGGAAGGGAAGGACATCAAATGAAAGACTGTACTGAGAGACAGGCTAATTTTGTAGGGAAAATCTGGCCTTCCCACAAGGGAAGGCCGGGGAATTTCCTTCAGAACAGACCAGAGCCAACAGCCCCACCAGCAGAGAGCTTCAGGTTTGGGGAAGAGACACCAACTAGATGCATCCGGAGTACTACAAGGACTGCTGACACTGAGCTTTTCACAAGGGACTTTCCGCTGGGGACTTTCCAGTAGGGGCGTGGCCTGGGCGGGACTGGGGAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTCTGCCTGTACGAGGTCTCTCTGGTTAGACCAGATCTGA +KX505501.1,nef,1306,1927,8796,9417,forward,0.7756134879067851,MRTQIVKLF,MRTQIVKLF*KH*DQQPH*KK**QHAREWEDPAIKQEFWLKQ*AK*QIQLQ**CRKAILGTKEKLLSASIVAKKGT*PEIAGPLEKRAVGNVEGKDIK*KTVLRDRLIL*GKSGLPTREGRGISFRTDQSQQPHQQRASGLGKRHQLDASGVLQGLLTLSFSQGTFRWGLSSRGVAWAGLGSGEPSDAAYKQLLSACTRSLWLDQI*,ATGCGAACCCAGATTGTAAAACTATTTTAAAAGCATTAGGACCAGCAGCCACACTAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCCAGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAATGACAAATTCAGCTACAGTAATGATGCAGAAAGGCAATTTTAGGAACCAAAGAAAAACTGTTAAGTGCTTCAATTGTGGCAAAGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGAAAAAAGGGCTGTTGGAAATGTGGAAGGGAAGGACATCAAATGAAAGACTGTACTGAGAGACAGGCTAATTTTGTAGGGAAAATCTGGCCTTCCCACAAGGGAAGGCCGGGGAATTTCCTTCAGAACAGACCAGAGCCAACAGCCCCACCAGCAGAGAGCTTCAGGTTTGGGGAAGAGACACCAACTAGATGCATCCGGAGTACTACAAGGACTGCTGACACTGAGCTTTTCACAAGGGACTTTCCGCTGGGGACTTTCCAGTAGGGGCGTGGCCTGGGCGGGACTGGGGAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTCTGCCTGTACGAGGTCTCTCTGGTTAGACCAGATCTGA +KX505501.1,pol,1628,1748,2084,5096,forward,0.7749542207392719,FCRENLAFPQGKAGEFPSEQTRANSPTSRELQVWGRDTN,FCRENLAFPQGKAGEFPSEQTRANSPTSRELQVWGRDTN*,TTTTGTAGGGAAAATCTGGCCTTCCCACAAGGGAAGGCCGGGGAATTTCCTTCAGAACAGACCAGAGCCAACAGCCCCACCAGCAGAGAGCTTCAGGTTTGGGGAAGAGACACCAACTAG +KX505501.1,tat_exon2,1746,1824,8376,8469,forward,0.7737226277372263,RCIRSTTRTADTELFTRDFPLGTFQ,RCIRSTTRTADTELFTRDFPLGTFQ*,AGATGCATCCGGAGTACTACAAGGACTGCTGACACTGAGCTTTTCACAAGGGACTTTCCGCTGGGGACTTTCCAGTAG +KX505501.1,vpu,1747,1927,6061,6310,forward,0.771956580245806,DASGVLQGLLTLSFSQGTFRWGLSSRGVAWAGLGSGEPSDAAYKQLLSACTRSLWLDQI,DASGVLQGLLTLSFSQGTFRWGLSSRGVAWAGLGSGEPSDAAYKQLLSACTRSLWLDQI*,GATGCATCCGGAGTACTACAAGGACTGCTGACACTGAGCTTTTCACAAGGGACTTTCCGCTGGGGACTTTCCAGTAGGGGCGTGGCCTGGGCGGGACTGGGGAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTCTGCCTGTACGAGGTCTCTCTGGTTAGACCAGATCTGA +KX505501.1,rev_exon2,1747,1927,8377,8653,forward,0.7615586171921224,DASGVLQGLLTLSFSQGTFRWGLSSRGVAWAGLGSGEPSDAAYKQLLSACTRSLWLDQI,DASGVLQGLLTLSFSQGTFRWGLSSRGVAWAGLGSGEPSDAAYKQLLSACTRSLWLDQI*,GATGCATCCGGAGTACTACAAGGACTGCTGACACTGAGCTTTTCACAAGGGACTTTCCGCTGGGGACTTTCCAGTAGGGGCGTGGCCTGGGCGGGACTGGGGAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTCTGCCTGTACGAGGTCTCTCTGGTTAGACCAGATCTGA +KX505501.1,vpr,1748,1751,5558,5850,forward,0.7792385647767734,M,M,ATG +KX505501.1,tat_exon1,1748,1751,5830,6045,forward,0.7791629563668745,M,M,ATG +KX505501.1,rev_exon1,1748,1751,5969,6045,forward,0.7774095553714444,M,M,ATG +MN691959,gag,639,2142,789,2292,forward,0.0801186943620179,MGARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALEKIEEEQNKSKKKAQQAAADTGHSNQISQNYPIVQNIQGQVVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNXXXPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRNQRKIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKECTERQANFLGKIWPSYKGRPGNFLQSRPEPTAPPEESFRSGVETTTPSQKQEPIDKELYPLTSLRSLFGNDPSSQ,MGARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALEKIEEEQNKSKKKAQQAAADTGHSNQISQNYPIVQNIQGQVVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNXXXPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRNQRKIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKECTERQANFLGKIWPSYKGRPGNFLQSRPEPTAPPEESFRSGVETTTPSQKQEPIDKELYPLTSLRSLFGNDPSSQ*,ATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAGAATTAGATCGATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAAATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTTAATCCTGGCCTGTTAGAAACATCAGAAGGCTGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAGATCATTATATAATACAGTAGCAACCCTCTATTGTGTGCATCAAAGGATAGAGATAAAAGACACCAAGGAAGCTTTAGAGAAGATAGAGGAAGAGCAAAACAAAAGTAAGAAAAAAGCACAGCAAGCAGCAGCTGACACAGGACACAGCAACCAGATCAGCCAAAATTACCCTATAGTGCAGAACATCCAGGGGCAAGTGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATCAATGAGGAAGCTGCAGAATGGGATAGAGTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGGATGGATGACAAATAATCYWYCTWTCCCAGTAGGAGAAATTTATAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGAATGTATAGCCCTACCAGCATTCTGGACATAAGACAAGGACCAAAAGAACCCTTTAGAGACTATGTAGACCGGTTCTATAAAACTCTAAGAGCCGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAACCCAGATTGTAAGACTATTTTAAAAGCATTGGGACCWGCAGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCCGGCCATAAGGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAACAAATTCAGCTACCATAATGATGCAGAGAGGCAATTTTAGGAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGAGTGTACTGAGAGACAGGCTAATTTTTTAGGGAAGATCTGGCCTTCCTACAAGGGAAGGCCAGGGAATTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTCTGGGGTAGAGACAACAACTCCCTCTCAGAAGCAGGAGCCGATAGACAAGGAACTGTATCCTTTAACTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAA +MN691959,pol,1934,4946,2084,5096,forward,0.054722889368558514,FFREDLAFLQGKAREFSSEQTRANSPTRRELQVWGRDNNSLSEAGADRQGTVSFNFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTRALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKITTESIVIWGKTPRFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKILFLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED,FFREDLAFLQGKAREFSSEQTRANSPTRRELQVWGRDNNSLSEAGADRQGTVSFNFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTRALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKITTESIVIWGKTPRFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKILFLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAGATCTGGCCTTCCTACAAGGGAAGGCCAGGGAATTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTCTGGGGTAGAGACAACAACTCCCTCTCAGAAGCAGGAGCCGATAGACAAGGAACTGTATCCTTTAACTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACTCATAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGATTGGTTGCACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAAAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCCGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATGAAGACTTCAGGAAGTATACTGCATTTACCATACCTAGTATAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGACATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAGCTGAGACAACATCTGTTGAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTGAATTGGGCAAGTCAGATTTACCCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAGAGCATTAACAGAAGTAATACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTCTAAAAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAGCAGGGGCAAGGCCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGGAAATATGCAAGAACGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGTATAGTAATATGGGGAAAGACTCCTAGATTTAAACTACCCATACAAAAGGAAACATGGGAAACATGGTGGACAGAATATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCTTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGGTATGTTACTAACAAAGGAAGACAAAAGGTTGTCCCCCTAACTAACACAACAAATCAGAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATCAAAGTGAATCAGAGTTAGTCAATCAAATAATAGAGCAGTTAATAAAAAAGGAAAAGGTCTATCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTGCTGGAATCAGGAAAATACTATTTTTAGATGGAATAGATAAGGCCCAAGATGAACATGAGAAATATCACAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGAGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAACTAGATTGTACACATTTAGAAGGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAAACAGGGCAGGAAACAGCATATTTTCTTTTAAAATTAGCAGGAAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTGCTACGGTTAAGGCCGCCTGTTGGTGGGCGGGAATCAAGCAGGAATTTGGAATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTCCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGACATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG +MN691959,vif,4890,5469,5040,5619,forward,0.09157509157509158,MENRWQVMIVWQVDRMRIRTWKSLVKHHMYVSGKARGWFYRHHYERTHPRISSEVYIPLGDARLVITTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPELADQLIHLYYFDCFSDSAIRKALLGHIVSPRCEYQAGHNKVGSLQYLALAALITPKKIKPPLPSVTKLTEDRWNKPQKTKGHRGSHTMNGH,MENRWQVMIVWQVDRMRIRTWKSLVKHHMYVSGKARGWFYRHHYERTHPRISSEVYIPLGDARLVITTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPELADQLIHLYYFDCFSDSAIRKALLGHIVSPRCEYQAGHNKVGSLQYLALAALITPKKIKPPLPSVTKLTEDRWNKPQKTKGHRGSHTMNGH*,ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAAAAGTTTAGTAAAACACCATATGTATGTTTCAGGGAAAGCTAGGGGATGGTTTTATAGACATCACTATGAAAGAACTCATCCAAGAATAAGTTCAGAAGTATACATCCCACTAGGGGATGCTAGATTGGTAATAACAACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGGAAAAGGAGATATAGCACACAAGTAGACCCTGAACTAGCAGACCAACTAATTCATCTGTATTACTTTGACTGTTTTTCAGACTCTGCTATAAGAAAGGCCTTATTAGGACATATAGTTAGCCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGATCTCTACAATACTTGGCACTAGCAGCATTAATAACACCAAAAAAGATAAAGCCACCTTTGCCTAGTGTTACAAAACTGACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCACACAATGAATGGACACTAG +MN691959,vpr,5408,5702,5558,5850,forward,0.2543940795559648,MEQAPEDQGPQREPHNEWTLELLEELKNEAVRHFPRIWLHGLGQHIYETYGDTWAGVEAIIRILQQLLFIHFRIGCRHSRIGVTQQKRARNGASRS,MEQAPEDQGPQREPHNEWTLELLEELKNEAVRHFPRIWLHGLGQHIYETYGDTWAGVEAIIRILQQLLFIHFRIGCRHSRIGVTQQKRARNGASRS*T,ATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCACACAATGAATGGACACTAGAGCTTTTAGAGGAGCTTAAGAATGAAGCTGTTAGACATTTTCCTAGGATTTGGCTCCATGGCTTAGGGCAACATATCTATGAAACTTATGGGGATACTTGGGCAGGAGTGGAAGCCATAATAAGAATTCTGCAACAACTGCTGTTTATCCATTTCAGAATTGGGTGTCGACATAGCAGAATAGGCGTTACTCAACAGAAGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACT +MN691959,tat_exon1,5679,5895,5830,6045,forward,0.31992687385740404,MEPVDPRLEPWKHPGSQPKTACTTCYCKKCCFHCQVCFMTKALGISYGRKKRRQRRRPPQDSQTHQVSLSKQ,MEPVDPRLEPWKHPGSQPKTACTTCYCKKCCFHCQVCFMTKALGISYGRKKRRQRRRPPQDSQTHQVSLSKQ,ATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCATCCAGGAAGTCAGCCTAAAACTGCTTGTACCACTTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATGACAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGACCTCCTCAAGACAGTCAGACTCATCAAGTTTCTCTATCAAAGCAG +MN691959,rev_exon1,5818,5896,5969,6045,forward,0.48200514138817474,MAGRSGDSDEDLLKTVRLIKFLYQSS,MAGRSGDSDEDLLKTVRLIKFLYQSS,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGACCTCCTCAAGACAGTCAGACTCATCAAGTTTCTCTATCAAAGCAGT +MN691959,vpu,5910,6156,6061,6310,forward,0.53246275519588,SIVIIEYRKILRQRKIDRLIDRLIERAEDSGNESEGEVSALVEMGVEMGHHAPWDIDDL,MQPIQIAIVALVVAIIIAIVV*SIVIIEYRKILRQRKIDRLIDRLIERAEDSGNESEGEVSALVEMGVEMGHHAPWDIDDL*,ATGCAACCTATACAAATAGCAATAGTAGCATTAGTAGTAGCAATAATAATAGCAATAGTTGTGTGATCCATAGTAATCATAGAATATAGGAAAATATTAAGACAAAGGAAAATAGACAGGTTAATTGATAGACTAATAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGAGAAGTGTCAGCACTTGTGGAGATGGGGGTGGAGATGGGGCACCATGCTCCTTGGGATATTGATGATCTGTAG +MN691959,env,6070,8683,6224,8795,forward,0.12280585765759788,MRVKEKCQHLWRWGWRWGTMLLGILMICSATEKLWVTVYYGVPVWKEATTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEVVLVNVTENFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVSLKCTDLGNATNTNSSNTNSSSGEMMMEKGEIKNCSFNISTSIRNKVQKEYAFFYKLDIVPIDNDTTSYTLTSCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNNKTFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEDVVIRSANFTDNAKTIIVQLNQSVEINCTRPNNNTRKSIRIQRGPGRAFVTIGKIGNMRQAHCNISRAKWNATLKQIASKLREQFGNNKTIIFKQSSGGDPEIVTHSFNCGGEFFYCNSTQLFNSTWFNSTWSTEGSNNTEGSDTITLPCRIKQFINMWQEVGKAMYAPPISGQIRCSSNITGLLLTRDGGNNNNGSEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQREKRAVGIGALFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARILAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKSLEQIWNNMTWMEWDREINNYTSLIHSLIEESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGGLVGLRIVFAVLSIVNRVRQGYSPLSFQTHLPNPGGPDRPEGIEEEGGERDRDRSIRLVNGSLALIWDDLRSLCLFSYHRLRDLLLIVTRIVELLGRRGWEALKYWWNLLQYWSQELKNSAVSLLNATAIAVAEGTDRVIEVVQGAYRAIRHIPRRIRQGLERILL,MRVKEKCQHLWRWGWRWGTMLLGILMICSATEKLWVTVYYGVPVWKEATTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEVVLVNVTENFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVSLKCTDLGNATNTNSSNTNSSSGEMMMEKGEIKNCSFNISTSIRNKVQKEYAFFYKLDIVPIDNDTTSYTLTSCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNNKTFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEDVVIRSANFTDNAKTIIVQLNQSVEINCTRPNNNTRKSIRIQRGPGRAFVTIGKIGNMRQAHCNISRAKWNATLKQIASKLREQFGNNKTIIFKQSSGGDPEIVTHSFNCGGEFFYCNSTQLFNSTWFNSTWSTEGSNNTEGSDTITLPCRIKQFINMWQEVGKAMYAPPISGQIRCSSNITGLLLTRDGGNNNNGSEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQREKRAVGIGALFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARILAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKSLEQIWNNMTWMEWDREINNYTSLIHSLIEESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGGLVGLRIVFAVLSIVNRVRQGYSPLSFQTHLPNPGGPDRPEGIEEEGGERDRDRSIRLVNGSLALIWDDLRSLCLFSYHRLRDLLLIVTRIVELLGRRGWEALKYWWNLLQYWSQELKNSAVSLLNATAIAVAEGTDRVIEVVQGAYRAIRHIPRRIRQGLERILL*DGWQVVKK*,ATGAGAGTGAAGGAGAAGTGTCAGCACTTGTGGAGATGGGGGTGGAGATGGGGCACCATGCTCCTTGGGATATTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAAGGAAGCAACCACCACTCTATTTTGTGCATCAGATGCTAAAGCATATGATGCAGAGGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGTATTGGTAAATGTGACAGAAAATTTTAACATGTGGAAAAATGACATGGTAGAACAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTAGTTTAAAGTGCACTGATTTGGGGAATGCTACTAATACCAATAGTAGTAATACCAATAGTAGTAGCGGGGAAATGATGATGGAGAAAGGAGAGATAAAAAACTGCTCTTTCAATATCAGCACAAGCATAAGAAATAAGGTGCAGAAAGAATATGCATTCTTTTATAAACTTGATATAGTACCAATAGATAATGATACTACCAGCTATACGTTGACAAGTTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAATGTAATAATAAGACGTTCAATGGAACAGGACCATGTACAAATGTCAGCACAGTACAATGTACACATGGAATTAGGCCAGTAGTATCAACTCAACTGCTGTTAAATGGCAGTCTAGCAGAAGAAGATGTAGTAATTAGATCTGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTGAACCAATCTGTAGAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATCCGTATCCAGAGAGGACCAGGGAGAGCATTTGTTACAATAGGAAAAATAGGAAATATGAGACAAGCACATTGTAACATTAGTAGAGCAAAATGGAATGCCACTTTAAAACAGATAGCTAGCAAATTAAGAGAACAATTTGGAAATAATAAAACAATAATCTTTAAGCAATCCTCAGGAGGGGACCCAGAAATTGTAACGCACAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAATTCAACACAACTGTTTAATAGTACTTGGTTTAATAGTACTTGGAGTACTGAAGGGTCAAATAACACTGAAGGAAGTGACACAATCACACTCCCATGCAGAATAAAACAATTTATAAACATGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCATCAGCGGACAAATTAGATGTTCATCAAATATTACAGGGCTGCTATTAACAAGAGATGGTGGTAATAACAACAATGGGTCCGAGATCTTCAGACCTGGAGGAGGAGATATGAGGGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAAAATTGAACCATTAGGAGTAGCACCCACCAAGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTTTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAATGACGCTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAGCAGCAGAACAATTTGCTGAGGGCTATTGAGGCGCAACAGCATCTGTTGCAACTCACAGTCTGGGGCATCAAACAGCTCCAGGCAAGAATCCTGGCTGTGGAAAGATACCTAAAGGATCAACAGCTCCTGGGGATTTGGGGCTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCTTGGAATGCTAGTTGGAGTAATAAATCTCTGGAACAGATTTGGAATAACATGACCTGGATGGAGTGGGACAGAGAAATTAACAATTACACAAGCTTAATACACTCCTTAATTGAAGAATCGCAAAACCAGCAAGAAAAGAATGAACAAGAATTATTGGAATTAGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAATTGGCTGTGGTATATAAAATTATTCATAATGATAGTAGGAGGCTTGGTAGGTTTAAGAATAGTTTTTGCTGTACTTTCTATAGTGAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAAACCCGGGGGGACCCGACAGGCCCGAAGGAATAGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCATTCGATTAGTGAACGGATCCTTAGCACTTATCTGGGACGATCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAATATTGGTGGAATCTCCTACAATATTGGAGTCAGGAGCTAAAGAATAGTGCTGTTAGCTTGCTCAATGCCACAGCTATAGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAGGAGCTTATAGAGCTATTCGCCACATACCTAGAAGAATAAGACAGGGCTTGGAAAGGATTTTGCTATAAGATGGGTGGCAAGTGGTCAAAAAGTAG +MN691959,tat_exon2,8237,8333,8376,8469,forward,0.24390243902439024,RPTSQTRGDPTGPKE,RPTSQTRGDPTGPKE*KKKVERETETDPFD**,AGACCCACCTCCCAAACCCGGGGGGACCCGACAGGCCCGAAGGAATAGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCATTCGATTAGTGA +MN691959,rev_exon2,8238,8514,8377,8653,forward,0.210025203024363,DPPPKPGGTRQARRNRRRRWRERQRQIHSISERILSTYLGRSAEPVPLQLPPLERLTLDCNEDCGTSGTQGVGSPQILVESPTILESGAKE,DPPPKPGGTRQARRNRRRRWRERQRQIHSISERILSTYLGRSAEPVPLQLPPLERLTLDCNEDCGTSGTQGVGSPQILVESPTILESGAKE*,GACCCACCTCCCAAACCCGGGGGGACCCGACAGGCCCGAAGGAATAGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCATTCGATTAGTGAACGGATCCTTAGCACTTATCTGGGACGATCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAATATTGGTGGAATCTCCTACAATATTGGAGTCAGGAGCTAAAGAATAG +MN691959,nef,8657,9278,8796,9417,forward,0.21510909839439352,MGGKWSKSSVIGWPTVRERMRRAEPAADGVGAASRDLEKHGAITSSNTAATNAACAWLEAQEEEEVGFPVTPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIHSQRRQDILDLWIYHTQGYFPDWQNYTPGPGIRYPLTFGWCYKLVPVEPDKVEEANKGENTSLLHPVSLHGMDDPEREVLEWRFDSRLAFHHVARELHPEYFKNC,MGGKWSKSSVIGWPTVRERMRRAEPAADGVGAASRDLEKHGAITSSNTAATNAACAWLEAQEEEEVGFPVTPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIHSQRRQDILDLWIYHTQGYFPDWQNYTPGPGIRYPLTFGWCYKLVPVEPDKVEEANKGENTSLLHPVSLHGMDDPEREVLEWRFDSRLAFHHVARELHPEYFKNC*,ATGGGTGGCAAGTGGTCAAAAAGTAGTGTGATTGGATGGCCTACTGTAAGGGAAAGAATGAGACGAGCTGAGCCAGCAGCAGATGGGGTGGGAGCAGCATCTCGAGACCTGGAAAAACATGGAGCAATCACAAGTAGCAATACAGCAGCTACCAATGCTGCTTGTGCCTGGCTAGAAGCACAAGAGGAGGAGGAGGTGGGTTTTCCAGTCACACCTCAGGTACCTTTAAGACCAATGACTTACAAGGCAGCTGTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCACTCCCAAAGAAGACAAGATATCCTTGATCTGTGGATCTACCACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGATCAGATATCCATTGACCTTTGGATGGTGCTACAAGCTAGTACCAGTTGAGCCAGATAAGGTAGAAGAGGCCAATAAAGGAGAGAACACCAGCTTGTTACACCCTGTGAGCCTGCATGGAATGGATGACCCTGAGAGAGAAGTGTTAGAGTGGAGGTTTGACAGCCGCCTAGCATTTCATCACGTGGCCCGAGAGCTGCATCCGGAGTACTTCAAGAACTGCTGA +MN692074,env,2,4115,6224,8795,forward,0.7595309512374151,MNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLRKKKSVTVLDVGDAYFSVPLDKEFRKYTAFTIPSRNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPEIVIYQYMDDLYVGSDLEIGQHRIKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEIVPLTKEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYAKMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDTQWRALRCCI,EGLIWSQKRQDILDLWIYHTQGYFPDWQNYTPGPGTRFPLTFGWCFKLVPVDPEKVEEANAGENNSLLHPISLHGMEDPEKEVLMWKFDSRLAFHHMARELHPEYYKNC*LRAIYKGLSAGDFPGRRGLGGTGEWRALRCCI*AAAFCLYWVSLVRPDLSLGALWLAREPTA*ASIKLALSALSSVCPSVV*LW*LEIPQTLLVSVENL*QWRPNRDLKAKEKPEELSRRRTRLAEARTARGEGRRLVSTPKILTSGG*KERDGCESVSIKCGRIRQMGKNSVKARGKEKI*IKTYSMGKQGARTIRS*SWPVRNIRRL*TNTGTATTIPSDRIRRT*III*YNSNPLLCASKDRGKRHQGSFREGRGRAKQK*EKGTASSS*HRKQQPGQPKLPYSAEHPGANGTSGHIT*NFKCMGKSSRREGFQPRSNTHVFSIIRRSHPTRFKHHAKHSGGTSSSHANVKRDHQ*GSCRMG*IAPSACRAYCTRPDERAKGK*HSRNY*YPSGTNRMDDK*STYPSRRNL*KMDNHGIK*NSKDV*SYQHSGHKTRTKGTL*RLCRSVL*NSKSRASFTGGKKLDDRNLVGPKCEPRL*DYFESIGTSRYIRRNDDSMSGSGRTRP*SKSFGGSNEPSNKFSYHNDAERQF*EPKKEC*VFQLWQRRAHSQKLQGP*EKGLLEMWKGRTPNERLY*ETG*FFREDLAFPQGKAREFPSEQTRANSPTRRELQVWGRDNNSRSEAGADRQGTVSFSFPQITLWQRPLVTIRIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLRKKKSVTVLDVGDAYFSVPLDKEFRKYTAFTIPSRNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPEIVIYQYMDDLYVGSDLEIGQHRIKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEIVPLTKEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYAKMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDTQWRALRCCI*,GAAGGGCTAATTTGGTCCCAGAAAAGACAAGATATCCTTGATCTGTGGATCTACCACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCGGGGACCAGATTTCCACTGACCTTTGGATGGTGCTTCAAGCTAGTACCAGTTGATCCAGAGAAGGTAGAAGAGGCCAATGCAGGAGAGAACAACAGCTTGTTACACCCTATAAGCCTGCATGGGATGGAGGACCCGGAGAAAGAAGTGTTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCACATGGCCCGAGAGCTGCATCCGGAGTACTACAAGAATTGCTGACTTCGAGCTATCTACAAGGGACTTTCCGCTGGGGACTTTCCAGGGAGGCGTGGCCTGGGCGGGACTGGGGAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTTTGCCTGTACTGGGTCTCTCTGGTTAGACCAGATCTGAGCCTGGGAGCTCTCTGGCTAGCTAGGGAACCCACTGCTTAAGCCTCAATAAAGCTTGCCTTGAGTGCTTTAAGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGGTAACTAGAGATCCCTCAGACCCTTTTAGTCAGTGTGGAAAATCTCTAGCAGTGGCGCCCGAACAGGGACTTGAAAGCGAAAGAGAAACCAGAGGAGCTCTCTCGACGCAGGACTCGGCTTGCTGAAGCGCGCACGGCAAGAGGCGAGGGGCGGCGACTGGTGAGTACGCCAAAAATTTTGACTAGCGGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCGTCAGTATTAAGTGCGGGAGAATTAGACAAATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTTAATCCTGGCCTGTTAGAAACATCAGAAGGCTGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAGATCATTATATAATACAATAGCAACCCTCTATTGTGTGCATCAAAAGATAGAGGTAAAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGCAGCAGCTGACACAGGAAACAACAGCCAGGTCAGCCAAAATTACCCTATAGTGCAGAACATCCAGGGGCAAATGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCACCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAGCCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGGATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCATGGGATTAAATAAAATAGTAAGGATGTATAGTCCTACCAGCATTCTGGACATAAGACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGATCGGTTCTATAAAACTCTAAGAGCCGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAACCCAGATTGTAAGACTATTTTGAAAGCATTGGGACCAGCCGCTACATTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCCGGCCATAAAGCAAGAGTTTTGGCGGAAGCAATGAGCCAAGTAACAAATTCAGCTACCATAATGATGCAGAAAGGCAATTTTAGGAACCAAAAAAGGAATGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGGAAAAGGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGATTGTACTGAGAGACAGGCTAATTTTTTAGGGAAGATCTGGCCTTCCCACAAGGGAAGGCCAGGGAATTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAACAACTCCCGCTCAGAAGCAGGAGCCGATAGACAAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAAGGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAATTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACTCATAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGATTGGTTGCACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCCGCAGGGTTAAGAAAGAAAAAATCAGTAACAGTACTGGATGTGGGGGATGCATATTTTTCAGTTCCCTTAGATAAAGAATTTAGGAAATATACTGCATTTACCATACCCAGTAGAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATTTTAGAGCCTTTTAGAAAACAAAATCCAGAAATAGTTATCTATCAATACATGGATGATTTATATGTAGGATCTGATTTAGAAATAGGGCAGCATAGAATAAAAATAGAGGAACTGAGACAACATCTGTTGAGATGGGGATTTACCACACCAGACAAAAAACATCAGAAAGAACCCCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTGAATTGGGCAAGTCAGATTTACCCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAAATAGTACCACTAACAAAAGAAGCAGAGCTGGAACTGGCAGAAAACAGGGAAATTCTAAAAGAACCAGTACATGGAGTATATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAGCAGGGGCAAGGTCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAAAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTACCCATACAAAAAGAAACATGGGAAGCATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAACAGAGGAAGACAAAAAGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAATTACAAGCAATTCATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATACCCAGTGGCGAGCCCTCAGATGCTGCATATAA +MN692074,gag,789,2292,789,2292,forward,0.18292040063257775,MGARASVLSAGELDKWEKIRLRPGGKKKYRLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTIATLYCVHQKIEVKDTKEALEKVEEEQNKSKKKAQQAAADTGNNSQVSQNYPIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIIMGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSATIMMQKGNFRNQKRNVKCFNCGKEGHIARNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETTTPAQKQEPIDKELYPLASLRSLFGNDPSSQ,MGARASVLSAGELDKWEKIRLRPGGKKKYRLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTIATLYCVHQKIEVKDTKEALEKVEEEQNKSKKKAQQAAADTGNNSQVSQNYPIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIIMGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSATIMMQKGNFRNQKRNVKCFNCGKEGHIARNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETTTPAQKQEPIDKELYPLASLRSLFGNDPSSQ*,ATGGGTGCGAGAGCGTCAGTATTAAGTGCGGGAGAATTAGACAAATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTTAATCCTGGCCTGTTAGAAACATCAGAAGGCTGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAGATCATTATATAATACAATAGCAACCCTCTATTGTGTGCATCAAAAGATAGAGGTAAAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGCAGCAGCTGACACAGGAAACAACAGCCAGGTCAGCCAAAATTACCCTATAGTGCAGAACATCCAGGGGCAAATGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCACCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAGCCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGGATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCATGGGATTAAATAAAATAGTAAGGATGTATAGTCCTACCAGCATTCTGGACATAAGACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGATCGGTTCTATAAAACTCTAAGAGCCGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAACCCAGATTGTAAGACTATTTTGAAAGCATTGGGACCAGCCGCTACATTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCCGGCCATAAAGCAAGAGTTTTGGCGGAAGCAATGAGCCAAGTAACAAATTCAGCTACCATAATGATGCAGAAAGGCAATTTTAGGAACCAAAAAAGGAATGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGGAAAAGGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGATTGTACTGAGAGACAGGCTAATTTTTTAGGGAAGATCTGGCCTTCCCACAAGGGAAGGCCAGGGAATTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAACAACTCCCGCTCAGAAGCAGGAGCCGATAGACAAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAA +MN692074,pol,2084,4115,2084,5096,forward,0.5606657906263733,FFREDLAFPQGKAREFPSEQTRANSPTRRELQVWGRDNNSRSEAGADRQGTVSFSFPQITLWQRPLVTIRIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLRKKKSVTVLDVGDAYFSVPLDKEFRKYTAFTIPSRNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPEIVIYQYMDDLYVGSDLEIGQHRIKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEIVPLTKEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYAKMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDTQWRALRCCI,FFREDLAFPQGKAREFPSEQTRANSPTRRELQVWGRDNNSRSEAGADRQGTVSFSFPQITLWQRPLVTIRIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLRKKKSVTVLDVGDAYFSVPLDKEFRKYTAFTIPSRNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPEIVIYQYMDDLYVGSDLEIGQHRIKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEIVPLTKEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYAKMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDTQWRALRCCI*,TTTTTTAGGGAAGATCTGGCCTTCCCACAAGGGAAGGCCAGGGAATTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAACAACTCCCGCTCAGAAGCAGGAGCCGATAGACAAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAAGGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAATTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACTCATAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGATTGGTTGCACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCCGCAGGGTTAAGAAAGAAAAAATCAGTAACAGTACTGGATGTGGGGGATGCATATTTTTCAGTTCCCTTAGATAAAGAATTTAGGAAATATACTGCATTTACCATACCCAGTAGAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATTTTAGAGCCTTTTAGAAAACAAAATCCAGAAATAGTTATCTATCAATACATGGATGATTTATATGTAGGATCTGATTTAGAAATAGGGCAGCATAGAATAAAAATAGAGGAACTGAGACAACATCTGTTGAGATGGGGATTTACCACACCAGACAAAAAACATCAGAAAGAACCCCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTGAATTGGGCAAGTCAGATTTACCCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAAATAGTACCACTAACAAAAGAAGCAGAGCTGGAACTGGCAGAAAACAGGGAAATTCTAAAAGAACCAGTACATGGAGTATATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAGCAGGGGCAAGGTCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAAAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTACCCATACAAAAAGAAACATGGGAAGCATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAACAGAGGAAGACAAAAAGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAATTACAAGCAATTCATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATACCCAGTGGCGAGCCCTCAGATGCTGCATATAA +MN692074,vif,3617,4115,5040,5619,forward,0.7630761882015763,MRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDTQWRALRCCI,MRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDTQWRALRCCI*,ATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTACCCATACAAAAAGAAACATGGGAAGCATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAACAGAGGAAGACAAAAAGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAATTACAAGCAATTCATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATACCCAGTGGCGAGCCCTCAGATGCTGCATATAA +MN692074,vpr,3617,4085,5558,5850,forward,0.7597138030408427,MRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDT,MRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDT,ATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTACCCATACAAAAAGAAACATGGGAAGCATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAACAGAGGAAGACAAAAAGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAATTACAAGCAATTCATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATACC +MN692074,nef,3617,4115,8796,9417,forward,0.7601585105044659,MRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDTQWRALRCCI,MRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDTQWRALRCCI*,ATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTACCCATACAAAAAGAAACATGGGAAGCATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAACAGAGGAAGACAAAAAGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAATTACAAGCAATTCATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATACCCAGTGGCGAGCCCTCAGATGCTGCATATAA +MN692074,tat_exon1,3823,4084,5830,6045,forward,0.7660867742611612,MVPVRERTHSRSRNLLCRWGS,MVPVRERTHSRSRNLLCRWGS*QGD*IRKSRICY*QRKTKSCLPN*HNKSED*ITSNSSSFAGFGIRSKHSNRLTICIRNHSSTTRY,ATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAACAGAGGAAGACAAAAAGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAATTACAAGCAATTCATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATAC +MN692074,rev_exon1,3823,4084,5969,6045,forward,0.7647402218330415,MVPVRERTHSRSRNLLCRWGS,MVPVRERTHSRSRNLLCRWGS*QGD*IRKSRICY*QRKTKSCLPN*HNKSED*ITSNSSSFAGFGIRSKHSNRLTICIRNHSSTTRY,ATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAACAGAGGAAGACAAAAAGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAATTACAAGCAATTCATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATAC +MN692074,vpu,4080,4164,6061,6310,forward,0.7715466882358227,IPSGEPSDAAYKQLLFACTGSLWLDQI,IPSGEPSDAAYKQLLFACTGSLWLDQI*,ATACCCAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTTTGCCTGTACTGGGTCTCTCTGGTTAGACCAGATCTGA +MN692074,tat_exon2,4080,4164,8376,8469,forward,0.7731707317073171,IPSGEPSDAAYKQLLFACTGSLWLDQI,IPSGEPSDAAYKQLLFACTGSLWLDQI*,ATACCCAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTTTGCCTGTACTGGGTCTCTCTGGTTAGACCAGATCTGA +MN692074,rev_exon2,4080,4164,8377,8653,forward,0.7691678258734964,IPSGEPSDAAYKQLLFACTGSLWLDQI,IPSGEPSDAAYKQLLFACTGSLWLDQI*,ATACCCAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTTTGCCTGTACTGGGTCTCTCTGGTTAGACCAGATCTGA +MN692145,gag,775,2287,789,2292,forward,0.20410783055198978,MGARASVLSGGKLDQWEKIRLRPGGKKKYQLKHIVWASKELERFAVNPGLLETTEGCRQILGQLQPSLQTGSEELKSLYNTVATLYCVHQRIDVKDTKEALDKIEEEQNKSKEKAKQAAADTGNSNQVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKESFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPGATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRSQRKIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETTTPSQKQESTGKELYPPLASLRSLFGNDPSSQ,MGARASVLSGGKLDQWEKIRLRPGGKKKYQLKHIVWASKELERFAVNPGLLETTEGCRQILGQLQPSLQTGSEELKSLYNTVATLYCVHQRIDVKDTKEALDKIEEEQNKSKEKAKQAAADTGNSNQVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKESFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPGATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRSQRKIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETTTPSQKQESTGKELYPPLASLRSLFGNDPSSQ*R*,ATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAAAATTAGATCAATGGGAGAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATCAATTAAAACATATAGTATGGGCAAGCAAGGAACTAGAACGATTTGCAGTTAATCCTGGCCTGTTAGAAACAACAGAAGGATGTAGACAAATACTGGGACAGCTACAACCATCTCTTCAGACAGGATCAGAAGAACTTAAATCATTATATAATACAGTAGCAACCCTCTATTGTGTGCATCAAAGGATAGATGTAAAAGACACCAAGGAAGCATTAGATAAGATAGAGGAAGAGCAAAACAAGAGTAAGGAAAAAGCAAAACAAGCAGCAGCTGACACAGGAAACAGCAACCAGGTCAGCCAAAATTACCCTATAGTGCAGAACCTTCAGGGCCAAATGGTACACCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAATAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAATACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGAGTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACCACTAGTACCCTTCAGGAACAAATAGGATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGGATGTATAGTCCTACCAGCATTCTGGATATAAGACAAGGACCAAAAGAATCCTTTAGAGATTATGTAGACCGGTTCTACAAAACTCTAAGAGCTGAGCAAGCCTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATTCAAACCCAGATTGTAAGACTATCTTAAAAGCATTGGGACCAGGAGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCCGGCCATAAAGCAAGAGTCTTGGCTGAAGCAATGAGCCAAGTAACAAATTCAGCTACCATAATGATGCAGAGAGGCAATTTTAGGAGCCAAAGGAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAGGGGCATATAGCCAGAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGATTGTACTGAAAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGGAGGCCAGGAAATTTCCTTCAGAGCAGGCCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAACAACTCCCTCTCAGAAGCAGGAGTCGACAGGCAAGGAACTGTATCCTCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAG +MN692145,pol,2070,5085,2084,5096,forward,0.14621890274040306,FFRENLAFPQGEARKFPSEQARANSPTRRELQVWGRDNNSLSEAGVDRQGTVSSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQISIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKESWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARVRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGASNRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLINKEKVYLAWVPAHKGIGGNEQVDKLVSTGIRKVLFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAREIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKVKIIRDYGKQMAGDDCVASRQDED,FFRENLAFPQGEARKFPSEQARANSPTRRELQVWGRDNNSLSEAGVDRQGTVSSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQISIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKESWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARVRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGASNRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLINKEKVYLAWVPAHKGIGGNEQVDKLVSTGIRKVLFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAREIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKVKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGGAGGCCAGGAAATTTCCTTCAGAGCAGGCCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAACAACTCCCTCTCAGAAGCAGGAGTCGACAGGCAAGGAACTGTATCCTCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTACCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATTAAAGTAAGACAGTATGATCAGATATCCATAGAAATCTGTGGACATAAAGCTATAGGGACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAAATTGGTTGTACTTTAAATTTCCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAACAGAAATTTGTACAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGACAGCACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAAAGAACTCAAGATTTCTGGGAAGTTCAATTAGGGATACCACATCCAGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATGAGGATTTCAGGAAGTATACTGCATTTACCATACCTAGTATAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAATGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGACATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAATTGAGACAACATCTGTTGAGGTGGGGATTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAGAAAAAGAAAGCTGGACTGTCAATGACATACAAAAGTTAGTGGGTAAATTGAATTGGGCAAGTCAGATTTATGCAGGGATCAAAGTAAAACAATTATGTAAACTTCTTAGGGGAGCCAAAGCACTAACAGAAGTAATACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAGATTTTAAAAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAGCAGGGGCAAGGCCAATGGACATATCAGATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAGTGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAGCCACTGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAGGTTACCCATACAAAAAGAAACATGGGAAACATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCATCTAATAGAGAGACTAAATTAGGAAAAGCAGGATATGTTACTGACAGAGGAAGACAGAAAGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAGTTACAAGCAATTCATCTAGCTTTGCAGGATTCAGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATAAAAGTGAATCAGAGTTAGTCAATCAAATAATAGAACAGTTAATAAACAAGGAAAAGGTCTACTTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTTAGTACTGGAATTAGAAAAGTACTATTTTTAGATGGAATAGATAAGGCCCAAGAAGAACATGAGAAATACCACAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTGGTAGCAAGAGAAATAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGAGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAGCTAGATTGTACACATTTAGAAGGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAAACAGGACAGGAAACAGCATACTTTCTCTTAAAATTAGCAGGAAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGTAATTTCACTAGTACTACAGTTAAGGCCGCCTGTTGGTGGGCGGGGATCAAGCAGGAGTTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGACCAGGCTGAACATCTTAAAACAGCAGTACAAATGGCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTGATACAAGACAATAGTGACATAAAAGTAGTGCCAAGAAGAAAAGTAAAAATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG +MN692145,vif,5029,5608,5040,5619,forward,0.2608047690014903,MENRWQVMIVWQVDRMRIRTWKSLVKHHMYVSGKAKGWFYRHHYESHHPRISSEVHVPLGDARLVITTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPNLADQLIHLYYFDCFSESAIRSAILGHIVSPSCEYQAGHNKVGSLQYLALAALITPKRRKPPLPSVAKLTEDRWNKPQKTKGHRGSHIRNGH,MENRWQVMIVWQVDRMRIRTWKSLVKHHMYVSGKAKGWFYRHHYESHHPRISSEVHVPLGDARLVITTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPNLADQLIHLYYFDCFSESAIRSAILGHIVSPSCEYQAGHNKVGSLQYLALAALITPKRRKPPLPSVAKLTEDRWNKPQKTKGHRGSHIRNGH*,ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAAAAGTTTAGTAAAACACCATATGTATGTTTCAGGGAAAGCTAAGGGATGGTTTTATAGACATCACTATGAAAGCCATCATCCAAGAATAAGTTCAGAAGTACATGTCCCACTAGGGGATGCTAGATTGGTAATAACAACATATTGGGGTCTGCATACAGGAGAAAGAGATTGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGGAAAAGGAGATATAGCACACAAGTAGACCCCAACCTAGCAGACCAACTGATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAGTGCCATATTAGGACATATAGTTAGTCCTAGTTGTGAATATCAAGCAGGACATAACAAGGTAGGATCTCTACAGTACTTGGCATTAGCAGCATTAATAACACCAAAAAGGAGAAAGCCCCCTTTGCCTAGTGTTGCAAAGCTGACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCACCGAGGGAGCCATATCAGGAATGGACACTAG +MN692145,vpr,5547,5841,5558,5850,forward,0.4170684667309551,MEQAPEDQGPPREPYQEWTLELLEELKNEAVRHFPRMWLHGLGQHIYDTYGDTWTGVEAIIRILQQLLFIHFRIGCQHSRIGIIRQRRTRNGANRS,MEQAPEDQGPPREPYQEWTLELLEELKNEAVRHFPRMWLHGLGQHIYDTYGDTWTGVEAIIRILQQLLFIHFRIGCQHSRIGIIRQRRTRNGANRS*T,ATGGAACAAGCCCCAGAAGACCAAGGGCCACCGAGGGAGCCATATCAGGAATGGACACTAGAGCTTTTAGAGGAGCTTAAGAATGAAGCTGTTAGACATTTTCCTAGGATGTGGCTCCATGGCTTAGGGCAACATATCTATGACACTTATGGGGATACTTGGACAGGAGTGGAAGCCATAATAAGAATTCTGCAACAACTGCTGTTCATTCATTTCAGGATTGGGTGTCAACATAGCAGAATAGGCATTATTCGCCAGAGGAGAACAAGAAATGGAGCCAATAGATCCTAGACT +MN692145,tat_exon1,5818,6037,5830,6045,forward,0.31992687385740404,MEPIDPRLEPWKHPGSQPKTACTSCYCKKCCFHCQVCFMTKALGISYGRKKRRQRRRASQDSQTHQVSLSKQ,MEPIDPRLEPWKHPGSQPKTACTSCYCKKCCFHCQVCFMTKALGISYGRKKRRQRRRASQDSQTHQVSLSKQ*,ATGGAGCCAATAGATCCTAGACTAGAGCCCTGGAAGCATCCAGGAAGCCAGCCTAAGACTGCTTGTACCTCTTGCTATTGTAAAAAGTGTTGCTTTCATTGTCAAGTCTGTTTCATGACAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTTCTCAAGACAGTCAGACTCATCAAGTTTCTCTATCAAAGCAGTAA +MN692145,rev_exon1,5957,6038,5969,6045,forward,0.4557731262660365,MAGRSGDSDEELLKTVRLIKFLYQSSK,MAGRSGDSDEELLKTVRLIKFLYQSSK,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTTCTCAAGACAGTCAGACTCATCAAGTTTCTCTATCAAAGCAGTAAG +MN692145,vpu,6049,6298,6061,6310,forward,0.48354327509142636,MNSLQISAIVAIVVAIILAIVVWSIVFIEYRKILRQRKIDRLIDRIRERAEDSGNESEGDQEELSTALMEMGHHAPWDVDDL,MNSLQISAIVAIVVAIILAIVVWSIVFIEYRKILRQRKIDRLIDRIRERAEDSGNESEGDQEELSTALMEMGHHAPWDVDDL*,ATGAACTCTTTACAAATATCAGCAATAGTAGCAATAGTAGTAGCAATAATACTAGCAATAGTTGTGTGGTCTATAGTATTCATAGAATATAGGAAAATATTAAGACAAAGAAAAATAGATAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGGGATCAGGAAGAACTATCAACAGCACTTATGGAGATGGGGCACCATGCTCCTTGGGATGTTGATGATCTGTAG +MN692145,env,6212,8783,6224,8795,forward,0.4452133553553136,MRVKGIRKNYQQHLWRWGTMLLGMLMICSAAGNLWVTVYYGVPVWKEATTTLFCASDAKAYGTEVHNVWATHACVPTDPNPQEVRLENVTENFNMWRNPMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDLGQESTNNNITGSIEKGEMKNCSFNISSSKGSKGHKEYASFYKLDVVPIGNNKTNGNYSSYRLISCNTSVITQACPKVSFEPIPIHFCAPAGYAILKCNDKQFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSANFTDNAKTIIVQLNQSVEITCTRPGNNTIRGVHMGPGKAFYAGAITGDIRKAHCIINKAKWNSTLRLVVAKLSEQFRNKTINFTQPSGGDPEIVTHSFNCGGEFFYCNTTKLFNSTWNATHMINGTWNDTEGNITLPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGGKTNESNTTEIFRPGGGDMRDNWRSELYKYKVVRIEPLGVAPTKAKRRVVQREKRAVGIGALFLGFLGAAGSTMGATSMALTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGVKQLQARVLALERYLKDQQLLGFWGCSGKLICTTDVPWNASWSNKSLGQIWENMTWMEWEREIDNYTSLIYTLITESQIQQEQNEKELLELDKWANLWNWFGITNWLWYIKIFIMIVGGLVGLRIVFAVLSIVNRVRQGYSPLSFQTRFPAPRGPDRPEGIEEEGGERDRDRSAPLVKGFLALIWVDLRSLCLFSYHRLRDLLLIITRIVELLGRRGWEVLKYLWSLLQYWTQELKNSAVSLLNATAIAVAEGTDRIIEVLQRVFRAILHIPTRIRQGFERALL,MRVKGIRKNYQQHLWRWGTMLLGMLMICSAAGNLWVTVYYGVPVWKEATTTLFCASDAKAYGTEVHNVWATHACVPTDPNPQEVRLENVTENFNMWRNPMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDLGQESTNNNITGSIEKGEMKNCSFNISSSKGSKGHKEYASFYKLDVVPIGNNKTNGNYSSYRLISCNTSVITQACPKVSFEPIPIHFCAPAGYAILKCNDKQFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSANFTDNAKTIIVQLNQSVEITCTRPGNNTIRGVHMGPGKAFYAGAITGDIRKAHCIINKAKWNSTLRLVVAKLSEQFRNKTINFTQPSGGDPEIVTHSFNCGGEFFYCNTTKLFNSTWNATHMINGTWNDTEGNITLPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGGKTNESNTTEIFRPGGGDMRDNWRSELYKYKVVRIEPLGVAPTKAKRRVVQREKRAVGIGALFLGFLGAAGSTMGATSMALTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGVKQLQARVLALERYLKDQQLLGFWGCSGKLICTTDVPWNASWSNKSLGQIWENMTWMEWEREIDNYTSLIYTLITESQIQQEQNEKELLELDKWANLWNWFGITNWLWYIKIFIMIVGGLVGLRIVFAVLSIVNRVRQGYSPLSFQTRFPAPRGPDRPEGIEEEGGERDRDRSAPLVKGFLALIWVDLRSLCLFSYHRLRDLLLIITRIVELLGRRGWEVLKYLWSLLQYWTQELKNSAVSLLNATAIAVAEGTDRIIEVLQRVFRAILHIPTRIRQGFERALL*,ATGAGAGTGAAGGGGATCAGGAAGAACTATCAACAGCACTTATGGAGATGGGGCACCATGCTCCTTGGGATGTTGATGATCTGTAGTGCTGCAGGCAATTTGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAAAGAAGCAACCACCACTCTATTTTGTGCATCAGATGCTAAAGCATATGGTACAGAGGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTGAGATTGGAAAATGTGACAGAAAATTTTAATATGTGGAGAAATCCAATGGTAGAACAGATGCATGAGGATATAATTAGTTTATGGGATCAAAGCCTAAAGCCATGTGTAAAGTTGACCCCACTCTGTGTCACTTTAAATTGCACTGATTTGGGACAGGAGAGTACCAATAATAATATCACAGGAAGTATAGAGAAAGGAGAAATGAAAAACTGCTCTTTCAATATCTCCTCAAGCAAAGGAAGTAAGGGGCATAAAGAATATGCATCTTTTTATAAACTTGATGTAGTACCAATAGGTAATAATAAGACTAATGGTAATTATTCTAGCTATAGGTTGATAAGTTGTAATACCTCAGTCATTACACAGGCCTGTCCAAAAGTATCATTTGAGCCAATTCCCATACATTTTTGTGCCCCGGCTGGGTATGCGATTCTAAAGTGTAATGATAAACAATTCAATGGAACAGGACCATGTACAAATGTCAGCACAGTACAGTGTACACATGGAATTAGGCCAGTAGTATCAACTCAACTGCTGTTAAATGGTAGTCTAGCAGAAGAAGAGGTAGTAATTAGATCTGCCAATTTCACGGACAATGCTAAAACCATAATAGTACAGCTGAACCAATCTGTAGAAATTACTTGTACAAGACCCGGTAACAATACAATAAGAGGGGTTCACATGGGACCAGGGAAGGCATTTTATGCAGGAGCAATAACAGGAGATATAAGAAAAGCACATTGTATCATTAATAAAGCAAAATGGAACAGTACTTTAAGACTGGTAGTTGCAAAATTAAGTGAGCAATTTAGGAATAAAACAATAAACTTTACTCAACCCTCAGGAGGGGACCCAGAAATTGTAACACACAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAATACAACAAAACTGTTTAATAGTACTTGGAATGCAACACACATGATTAATGGTACTTGGAATGATACTGAGGGAAATATCACCCTCCCATGCAGAATAAAACAAATTATAAACATGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCATCAGAGGACAAATTAGATGTTCATCCAATATTACAGGGTTGCTATTAACAAGAGATGGTGGTAAGACTAACGAGAGCAACACCACCGAGATCTTTAGACCTGGAGGAGGAGATATGAGAGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAGAATTGAACCATTAGGGGTAGCACCCACCAAGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTCTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAACGTCGATGGCGTTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAACAGCAGAACAATTTGCTGAGAGCTATTGAGGCGCAACAACATTTGTTGCAACTCACAGTCTGGGGCGTCAAGCAGCTCCAGGCAAGAGTCCTGGCTCTGGAAAGATACCTAAAGGATCAACAGCTCCTGGGGTTTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGATGTGCCTTGGAATGCTAGTTGGAGTAATAAATCTCTGGGACAAATTTGGGAGAACATGACCTGGATGGAGTGGGAAAGAGAAATTGATAATTACACAAGCTTAATATACACTTTAATTACAGAATCGCAGATCCAACAAGAACAGAATGAAAAAGAATTGTTGGAATTGGATAAATGGGCAAATTTGTGGAATTGGTTTGGCATAACAAACTGGCTGTGGTACATAAAAATATTTATAATGATAGTAGGAGGCTTAGTAGGTTTAAGAATAGTTTTTGCTGTACTTTCTATAGTGAATAGAGTTAGGCAGGGATACTCACCATTATCGTTTCAGACCCGCTTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGCTCCATTAGTGAAAGGATTCTTAGCACTTATCTGGGTCGATCTACGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATAATAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGTCCTCAAATACTTGTGGAGTCTCCTACAGTATTGGACACAGGAACTAAAGAATAGTGCTGTTAGCTTGCTCAATGCCACAGCCATAGCAGTAGCTGAGGGGACAGATAGGATTATAGAAGTATTACAAAGAGTTTTTAGAGCTATCCTCCATATCCCTACAAGAATAAGACAGGGCTTTGAAAGGGCTTTGCTATAA +MN692145,tat_exon2,8364,8460,8376,8469,forward,0.439759036144578,RPASQPRGDPTGPKESKKKVERETETDPLH,RPASQPRGDPTGPKESKKKVERETETDPLH**,AGACCCGCTTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGCTCCATTAGTGA +MN692145,rev_exon2,8365,8641,8377,8653,forward,0.29843322556577967,DPLPSPEGTRQARRNRRRRWRERQRQIRSISERILSTYLGRSTEPVPLQLPPLERLTLDNNEDCGTSGTQGVGSPQILVESPTVLDTGTKE,DPLPSPEGTRQARRNRRRRWRERQRQIRSISERILSTYLGRSTEPVPLQLPPLERLTLDNNEDCGTSGTQGVGSPQILVESPTVLDTGTKE*,GACCCGCTTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGCTCCATTAGTGAAAGGATTCTTAGCACTTATCTGGGTCGATCTACGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATAATAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGTCCTCAAATACTTGTGGAGTCTCCTACAGTATTGGACACAGGAACTAAAGAATAG +MN692145,nef,8784,9576,8796,9417,forward,0.38480154888673335,MGGKWSKSSLVGWPNVRERMRRAEPAADGVGAVSRDLERHGAITSSNTATNNADCAWLEAQKEEEVGFPVTPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIHSQKRQDILDLWIYHTQGYFPDWQNYTPGPGVRYPLTFGWCFKLVPVEPTDRENDRLLHPASLQGMEDPEGEVLEWRFDSRLAFHHMARELHPEYYKNC,MGGKWSKSSLVGWPNVRERMRRAEPAADGVGAVSRDLERHGAITSSNTATNNADCAWLEAQKEEEVGFPVTPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIHSQKRQDILDLWIYHTQGYFPDWQNYTPGPGVRYPLTFGWCFKLVPVEPTDRENDRLLHPASLQGMEDPEGEVLEWRFDSRLAFHHMARELHPEYYKNC*HRAFYKGLSAGDFPGEAWPGRGRGVASPQMLHISSCFCLYWVSLVRPDLSLGALWLTREPTA*,ATGGGGGGCAAGTGGTCAAAAAGTAGTTTGGTTGGATGGCCTAATGTAAGGGAAAGAATGAGACGAGCTGAGCCAGCAGCAGATGGGGTGGGAGCAGTATCTCGAGACTTGGAAAGACATGGAGCAATCACAAGTAGTAATACAGCAACTAACAATGCTGATTGTGCCTGGCTAGAAGCACAAAAGGAGGAGGAGGTGGGTTTTCCAGTCACACCTCAGGTACCTTTAAGACCAATGACTTACAAGGCAGCTGTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCACTCCCAAAAAAGACAAGATATTCTTGATCTATGGATCTACCACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGGTCAGATATCCACTGACCTTTGGATGGTGCTTCAAGCTAGTACCAGTTGAGCCCACTGACAGAGAGAATGACAGATTGCTGCACCCTGCAAGCCTGCAGGGGATGGAAGACCCGGAGGGAGAAGTGTTAGAGTGGAGGTTTGACAGCCGCCTGGCATTTCATCACATGGCCCGAGAGCTGCATCCGGAGTACTACAAGAACTGCTGACATCGAGCTTTCTACAAGGGACTTTCCGCTGGGGACTTTCCAGGGGAGGCGTGGCCTGGGCGGGGCAGGGGAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTCTGCCTGTACTGGGTCTCTCTGGTTAGACCAGATCTGAGCCTGGGAGCTCTCTGGCTGACTAGGGAACCCACTGCTTAA +MN090335,gag,315,1665,789,2292,forward,0.5897300158814187,MAYSPVAAPRLLPCALQQATPQDLNTMLNTVGGHQAAMQMLKEVINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQATGTANILMQRGNFRNQRKPVKCFNCGKEGHIAKNCRAPRKKGCWKCGREGHQMKDCTERQANFLGKIWPSHKGRPGNFPQSRPEIPQSRPEPTAPPAPPEESFRFGEATTPSQKQETMDKELYPPLTSLRSLFGNDPSSQ,MYTIEGGYCII**SKFF*SCLKGWL*LFQYLFTAS*CF*QARINCESF*FPACPYYMF*SIFFLSPWP*PNFLPSI*FSPAQY*RSRTHLSPSSLR*SKMAYSPVAAPRLLPCALQQATPQDLNTMLNTVGGHQAAMQMLKEVINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQATGTANILMQRGNFRNQRKPVKCFNCGKEGHIAKNCRAPRKKGCWKCGREGHQMKDCTERQANFLGKIWPSHKGRPGNFPQSRPEIPQSRPEPTAPPAPPEESFRFGEATTPSQKQETMDKELYPPLTSLRSLFGNDPSSQ*,ATGTACACAATAGAGGGTGGCTACTGTATTATATAATGATCTAAGTTCTTCTGATCCTGTCTGAAGGGATGGTTGTAGCTGTTCCAATATCTGTTTACAGCCTCCTGATGTTTCTAACAGGCCAGGATTAACTGCGAATCGTTCTAGTTCCCTGCTTGCCCATACTATATGTTTTAATCTATATTTTTTCTTTCCCCCTGGCCTTAACCGAATTTTCTCCCATCTATCTAATTCTCCCCCGCTCAATACTGACGCTCTCGCACCCATCTCTCTCCTTCTAGCCTCCGCTAGTCAAAAATGGCGTACTCACCAGTCGCCGCCCCTCGCCTCTTGCCGTGCGCGCTTCAGCAAGCCACCCCACAAGATTTGAACACTATGCTAAACACAGTGGGTGGACACCAAGCAGCTATGCAAATGTTAAAAGAGGTCATCAATGAGGAAGCTGCAGAATGGGATAGATTACATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGGATGGATGACACATAATCCACCTATCCCAGTAGGAGAGATTTATAAAAGATGGATAATTCTGGGACTAAATAAAATAGTAAGAATGTATAGCCCTACCAGCATTTTGGACATAAAGCAAGGGCCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAAAACTTTAAGAGCCGAGCAAGCTACACAGGAAGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAGAATGCAAATCCAGATTGTAAAACTATTTTAAAAGCATTAGGACCAGCAGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGGGGACCCGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGCAACAGGTACAGCCAACATACTGATGCAGAGAGGCAATTTTAGGAACCAAAGAAAGCCTGTTAAATGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAGGGAAGGACACCAAATGAAGGATTGCACTGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCTCACAAGGGAAGGCCAGGGAACTTTCCTCAGAGCCGACCAGAAATTCCTCAGAGCAGACCAGAGCCAACAGCCCCACCAGCCCCTCCAGAAGAGAGCTTCAGGTTTGGGGAAGCAACAACTCCCTCTCAGAAGCAGGAGACAATGGACAAGGAGCTGTATCCTCCTCTAACTTCCCTCAGATCACTCTTTGGCAACGACCCATCGTCACAATAA +MN090335,pol,1427,4469,2084,5096,forward,0.259214256784123,FFRENLAFSQGKARELSSEPTRNSSEQTRANSPTSPSRRELQVWGSNNSLSEAGDNGQGAVSSSNFPQITLWQRPIVTIKIGGQLKEALLDTGADDTVLEDIDLPGKWKPKMIGGIGGFIKVRQYEQVPIEISGHKAIGTVLVGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDGTKWRKLVDFRELNKRTQEFWEIQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKTNPDIVIYQYMDDLYVGSDLEIGQHRTKVEELRQHLMRWGFTTPDKKHQKEPPFLWMGYELHPNKWTVQPIVLPEKESWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGTKALTEVVPLTEEAELELAENREILKDPVHGAYYDPAKDLIAELQKQGEGQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKISTESIVIWGRTPKFRLPIQKETWETWWTDYWQATWIPEWEFVNTPPLVKLWYQLEKEPIIGAETFYVDGAANRDNKSGKAGYVTDRGRQKVVTINDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIEKAQEDHEKYHSNWRTMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEEKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGRNFTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATEIQTKELQKQITKIPNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED,FFRENLAFSQGKARELSSEPTRNSSEQTRANSPTSPSRRELQVWGSNNSLSEAGDNGQGAVSSSNFPQITLWQRPIVTIKIGGQLKEALLDTGADDTVLEDIDLPGKWKPKMIGGIGGFIKVRQYEQVPIEISGHKAIGTVLVGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDGTKWRKLVDFRELNKRTQEFWEIQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKTNPDIVIYQYMDDLYVGSDLEIGQHRTKVEELRQHLMRWGFTTPDKKHQKEPPFLWMGYELHPNKWTVQPIVLPEKESWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGTKALTEVVPLTEEAELELAENREILKDPVHGAYYDPAKDLIAELQKQGEGQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKISTESIVIWGRTPKFRLPIQKETWETWWTDYWQATWIPEWEFVNTPPLVKLWYQLEKEPIIGAETFYVDGAANRDNKSGKAGYVTDRGRQKVVTINDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIEKAQEDHEKYHSNWRTMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEEKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGRNFTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATEIQTKELQKQITKIPNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAAATCTGGCCTTCTCACAAGGGAAGGCCAGGGAACTTTCCTCAGAGCCGACCAGAAATTCCTCAGAGCAGACCAGAGCCAACAGCCCCACCAGCCCCTCCAGAAGAGAGCTTCAGGTTTGGGGAAGCAACAACTCCCTCTCAGAAGCAGGAGACAATGGACAAGGAGCTGTATCCTCCTCTAACTTCCCTCAGATCACTCTTTGGCAACGACCCATCGTCACAATAAAGATAGGGGGGCAACTAAAGGAAGCTTTATTAGATACAGGAGCAGATGATACAGTATTAGAGGACATAGATTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAATATGAACAGGTACCCATAGAAATTAGCGGACACAAAGCTATAGGTACAGTGTTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGCTTGGTTGCACTCTAAATTTTCCCATCAGCCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGACGGCCCAAAGGTTAAACAATGGCCATTAACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTGTTTGCCATAAAGAAAAAAGATGGCACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGAATTCTGGGAAATTCAATTAGGTATACCACATCCTGCAGGGCTAAAAAAGAAAAAATCAGTCACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATAAAGACTTCAGGAAATATACTGCATTTACCATACCTAGTATAAACAATGAGACACCAGGGATTAGATATCAGTATAATGTGCTTCCACAAGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAGATCCTGGAGCCTTTTAGAAAGACAAATCCAGACATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAACATAGAACAAAAGTAGAGGAACTGAGGCAACATCTGATGAGGTGGGGATTTACCACACCAGACAAAAAGCACCAGAAAGAACCCCCATTCCTTTGGATGGGGTATGAACTCCATCCTAATAAATGGACAGTACAGCCTATAGTACTGCCAGAAAAGGAAAGTTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTATGCAGGGATTAAAGTGAAGCAATTATGTAAGCTCCTTAGGGGAACCAAAGCATTAACAGAAGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAGATTCTAAAAGATCCGGTACATGGAGCATATTATGACCCAGCAAAGGACTTAATAGCAGAACTACAGAAGCAGGGAGAAGGTCAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGGAAATATGCAAGAACGAGGGGTGCCCATACTAATGATGTAAAGCAATTAACAGAGGCAGTGCAAAAAATATCCACAGAAAGTATAGTAATATGGGGAAGGACTCCTAAATTTAGATTACCCATACAAAAAGAAACATGGGAAACATGGTGGACAGATTATTGGCAAGCCACCTGGATCCCTGAGTGGGAGTTTGTCAACACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAAAAAGAACCCATAATAGGAGCAGAAACCTTCTATGTAGATGGGGCAGCTAATAGGGATAATAAATCAGGAAAAGCAGGATATGTTACTGATAGAGGAAGACAAAAGGTTGTCACCATAAATGACACAACAAATCAGAAAACTGAATTACAAGCCATTCATCTAGCCTTGCAGGATTCGGGGCTAGAAGTAAACATAGTAACAGACTCACAGTATGCATTAGGGATCATTCAAGCACAACCAGATAAAAGTGAATCAGAGTTAGTCAGTCAAATAATAGAACAGTTAATAAAAAAGGAAAAGGTCTACCTGGCATGGGTGCCAGCCCACAAAGGAATTGGAGGAAATGAACAGGTAGATAAACTAGTCAGTGCTGGAATCAGGAAAGTACTATTTTTAGATGGAATAGAAAAAGCCCAAGAAGACCATGAGAAATATCACAGTAATTGGAGAACAATGGCTAGTGATTTTAACCTACCACCTATAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGAGAAGCTATGCATGGGCAAGTAGACTGTAGTCCAGGTATATGGCAGCTAGATTGTACACATTTAGAAGAAAAAATTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTGATTCCAGCAGAGACAGGGCAAGAAACAGCATACTTTATTTTAAAACTAGCAGGAAGATGGCCAGTAAAAACAATACATACAGACAATGGCCGCAATTTCACCAGTAATACAGTGAAGGCCGCCTGTTGGTGGGCGGGAATCAAGCAGGAATTTGGTATTCCCTACAATCCCCAGAGTCAAGGAGTAGTAGAATCTATGAATAATGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGATACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACAGAAATACAGACTAAAGAATTACAAAAACAAATTACAAAAATTCCAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAACAGTGACATAAAAGTAGTGCCAAGAAGAAAAGCAAAAATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG +MN090335,vif,4413,5001,5040,5619,forward,0.3566796368352788,MENRWQVMIVWQVDRMRIRTWKSLVKYHMYISKKAKKWAYRHHYETTHPRISSEVHIPLGDDRLVITTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPDLADHLIHVHYFDCFSESAIRNAILGHRVSPRCEYQAGHNKVGSLQYLALTAVITPKKIKPPLPSVKKLTEDRWNKPQKTKGHRESHTMNGH,MENRWQVMIVWQVDRMRIRTWKSLVKYHMYISKKAKKWAYRHHYETTHPRISSEVHIPLGDDRLVITTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPDLADHLIHVHYFDCFSESAIRNAILGHRVSPRCEYQAGHNKVGSLQYLALTAVITPKKIKPPLPSVKKLTEDRWNKPQKTKGHRESHTMNGH*SF*,ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAAAAGTTTAGTAAAATACCATATGTATATTTCAAAGAAAGCCAAAAAATGGGCTTATAGACACCATTACGAAACCACTCATCCAAGAATAAGTTCAGAAGTACATATCCCACTAGGGGATGATAGATTGGTAATAACAACATATTGGGGTCTGCATACAGGAGAGAGAGACTGGCATTTGGGCCAGGGAGTCTCCATAGAATGGAGAAAAAGGAGATATAGCACACAAGTAGACCCTGACTTAGCAGACCATCTAATTCATGTGCATTATTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACATAGAGTTAGCCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGATCTCTACAATACTTGGCACTAACAGCAGTAATAACACCAAAGAAGATAAAGCCACCTTTGCCTAGTGTAAAGAAACTGACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGAGAGCCATACAATGAATGGACACTAGAGCTTTTAG +MN090335,vpr,4931,5225,5558,5850,forward,0.4557731262660367,MEQAPEDQGPQREPYNEWTLELLEELKREAVRHFPRPWLQDLGQYIYETYGDTWTGVEAIIRILQQMLFIHFRIGCHHSRIGIVLQRRARNGASRS,MEQAPEDQGPQREPYNEWTLELLEELKREAVRHFPRPWLQDLGQYIYETYGDTWTGVEAIIRILQQMLFIHFRIGCHHSRIGIVLQRRARNGASRS*T,ATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGAGAGCCATACAATGAATGGACACTAGAGCTTTTAGAAGAGCTTAAGAGAGAAGCTGTTAGACATTTCCCTAGACCATGGCTACAAGACCTAGGACAATATATCTATGAAACTTATGGGGATACTTGGACAGGAGTGGAAGCCATAATAAGAATTCTGCAACAAATGCTGTTTATTCATTTCAGAATTGGGTGTCACCATAGCAGAATAGGCATTGTTCTGCAAAGAAGAGCAAGAAATGGAGCCAGTAGATCATAGACT +MN090335,tat_exon1,5202,5418,5830,6045,forward,0.42503863987635226,MEPVDHRLEPWKHPGSQPRTPCTNCYCKKCCFHCQVCFIQKALGISYGRKKRRQRRRSPQDSQTHQVPLPKQ,MEPVDHRLEPWKHPGSQPRTPCTNCYCKKCCFHCQVCFIQKALGISYGRKKRRQRRRSPQDSQTHQVPLPKQ,ATGGAGCCAGTAGATCATAGACTAGAGCCCTGGAAGCATCCAGGAAGTCAGCCTAGGACTCCTTGTACCAATTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTGTGTTTTATACAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGAGACGAAGATCTCCTCAAGACAGTCAGACTCATCAAGTTCCTCTACCAAAGCAG +MN090335,rev_exon1,5341,5419,5969,6045,forward,0.5275498241500586,MAGRSGDRDEDLLKTVRLIKFLYQSS,MAGRSGDRDEDLLKTVRLIKFLYQSS,ATGGCAGGAAGAAGCGGAGACAGAGACGAAGATCTCCTCAAGACAGTCAGACTCATCAAGTTCCTCTACCAAAGCAGT +MN090335,vpu,5433,5682,6061,6310,forward,0.5141437308868502,MQSLEILAIVALVVAAIIAIVVWTIVGIEYRKILRQRKIDKIINRIRERAEDSGNESEGDQEELSALVVEMGHDAPWDVDDL,MQSLEILAIVALVVAAIIAIVVWTIVGIEYRKILRQRKIDKIINRIRERAEDSGNESEGDQEELSALVVEMGHDAPWDVDDL*,ATGCAATCTTTAGAGATATTAGCAATAGTAGCATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGACCATAGTAGGCATAGAATATAGGAAAATATTAAGACAAAGAAAAATAGATAAAATAATTAATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGCGAAGGGGATCAGGAAGAATTGTCAGCACTTGTGGTGGAAATGGGGCACGATGCTCCTTGGGATGTTGATGATCTGTAG +MN090335,env,5596,8158,6224,8795,forward,0.49272619525530026,MRAKGIRKNCQHLWWKWGTMLLGMLMICSAAENLWVTVYYGVPVWRDANTTLFCASDAKAYDTEVHNVWATHACVPTDPNPHEVELKNVTENFNMWKNNMVDQMHEDIINLWDQSLKPCAKLTPLCVTLNCTDLRNDTVGNQTNLTETNTIQGREMTNCSFNITTEIRDKVRKEHALFYKLDVMPIDRDNTSYTLINCNTSVITQACPKVTFEPIPIHYCTPAGFAILKCKDEMFNGTGPCKNVSTVQCTHGIRPVVSTQLLLNGSLAEKEIVLRSENFTDNGKNIIVQLNRSIVINCTRPNNNTRKSISVAGRAIYATGQIIGDIRQAHCNISETDWNDTLSKIVEKLREKFGKDKTIIFNQSSGGDMEIETHSFNCGGEFFYCNTTRLFNSTWSVNGTSINGTKNITLPCRIKQIINRWQEVGKAMYAPPISGIIRCSSNITGLILTRDGGTNNSTEETETFRPGGGNMKDNWRSELYKYKVVKIEPLGVAPTKAQRRVVQREKRAIGALGAMFLGFLGAAGSTMGAASLTLTVQARQLLSGIVQQQNNLLRAIEAQQHMLQLTVWGIKQLQARVLSVERYLQDQQLLGIWGCSGKLICTTTVPWNTSWSNKSYDTIWDNMTWMQWDREIQNYTGKIYNLLEESQIQQEKNEKELLELDQWANLWNWFSITKWLWYIKIFIMIVGGLVGLKIIFAVFSIVNRVRQGYSPLSLQTLLPTPRGPDRPEGIEEEGGERDRGRSGRLVTGFLPLIWDDLRSLCLFSYHHLRDLLLIVLRTVQVLGHRGWEILKYWWSLLQYWIQELKNSAVSLLNTIAIAVAEGTDRVIEVGQRIGRAFLHIPRRIRQGLERALQ,MRAKGIRKNCQHLWWKWGTMLLGMLMICSAAENLWVTVYYGVPVWRDANTTLFCASDAKAYDTEVHNVWATHACVPTDPNPHEVELKNVTENFNMWKNNMVDQMHEDIINLWDQSLKPCAKLTPLCVTLNCTDLRNDTVGNQTNLTETNTIQGREMTNCSFNITTEIRDKVRKEHALFYKLDVMPIDRDNTSYTLINCNTSVITQACPKVTFEPIPIHYCTPAGFAILKCKDEMFNGTGPCKNVSTVQCTHGIRPVVSTQLLLNGSLAEKEIVLRSENFTDNGKNIIVQLNRSIVINCTRPNNNTRKSISVAGRAIYATGQIIGDIRQAHCNISETDWNDTLSKIVEKLREKFGKDKTIIFNQSSGGDMEIETHSFNCGGEFFYCNTTRLFNSTWSVNGTSINGTKNITLPCRIKQIINRWQEVGKAMYAPPISGIIRCSSNITGLILTRDGGTNNSTEETETFRPGGGNMKDNWRSELYKYKVVKIEPLGVAPTKAQRRVVQREKRAIGALGAMFLGFLGAAGSTMGAASLTLTVQARQLLSGIVQQQNNLLRAIEAQQHMLQLTVWGIKQLQARVLSVERYLQDQQLLGIWGCSGKLICTTTVPWNTSWSNKSYDTIWDNMTWMQWDREIQNYTGKIYNLLEESQIQQEKNEKELLELDQWANLWNWFSITKWLWYIKIFIMIVGGLVGLKIIFAVFSIVNRVRQGYSPLSLQTLLPTPRGPDRPEGIEEEGGERDRGRSGRLVTGFLPLIWDDLRSLCLFSYHHLRDLLLIVLRTVQVLGHRGWEILKYWWSLLQYWIQELKNSAVSLLNTIAIAVAEGTDRVIEVGQRIGRAFLHIPRRIRQGLERALQ*,ATGAGAGCGAAGGGGATCAGGAAGAATTGTCAGCACTTGTGGTGGAAATGGGGCACGATGCTCCTTGGGATGTTGATGATCTGTAGTGCTGCGGAAAATTTGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAGAGATGCAAATACCACTCTATTCTGTGCATCAGATGCTAAAGCATATGATACAGAAGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCTAACCCACATGAAGTAGAATTGAAAAATGTGACAGAAAATTTTAATATGTGGAAAAATAACATGGTGGACCAGATGCATGAGGATATAATCAATTTATGGGATCAAAGCCTAAAGCCATGTGCAAAATTGACCCCACTCTGTGTTACTTTAAATTGCACTGATTTAAGAAATGATACTGTAGGAAATCAAACAAATCTCACTGAAACTAATACAATACAGGGAAGAGAAATGACAAACTGCTCTTTCAATATCACCACAGAGATAAGAGATAAAGTGCGAAAAGAACATGCACTTTTTTATAAACTTGATGTCATGCCAATAGATAGGGATAATACAAGTTATACATTGATAAATTGCAATACCTCAGTCATTACACAGGCCTGTCCAAAGGTAACCTTTGAACCAATTCCCATACATTATTGTACTCCAGCTGGTTTTGCAATTCTAAAGTGTAAGGATGAGATGTTCAATGGAACAGGACCATGTAAGAATGTCAGCACAGTACAATGTACACATGGAATTAGACCAGTAGTGTCAACTCAACTACTGTTAAATGGTAGCCTAGCAGAAAAAGAGATAGTACTTAGATCTGAAAATTTCACAGACAATGGTAAAAATATAATAGTACAGCTAAATAGATCTATAGTAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAGTGTAGCAGGGAGAGCAATTTATGCAACAGGGCAGATAATAGGAGATATAAGACAAGCACATTGTAACATCAGTGAGACAGATTGGAATGACACTTTAAGCAAAATAGTTGAAAAATTAAGGGAAAAATTTGGAAAAGATAAAACAATAATCTTTAATCAATCATCAGGAGGGGACATGGAAATTGAAACGCACAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAACACAACACGACTGTTTAATAGTACTTGGAGTGTTAATGGAACTAGCATAAACGGAACTAAAAATATCACACTCCCGTGCAGAATAAAACAAATTATAAACAGGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCTATCAGTGGGATAATTAGGTGCTCATCAAATATTACAGGACTAATATTAACAAGAGATGGTGGTACAAATAATAGTACAGAGGAGACGGAGACCTTCAGACCTGGAGGGGGAAATATGAAGGACAATTGGAGAAGTGAATTATATAAATACAAAGTAGTAAAAATTGAGCCATTAGGAGTAGCACCCACCAAGGCACAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAATAGGAGCGTTAGGAGCTATGTTCCTCGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCACTGACGCTGACGGTACAAGCCAGACAATTATTGTCTGGTATAGTGCAACAGCAGAACAATCTGCTGAGGGCTATTGAGGCGCAACAGCATATGTTGCAACTCACAGTCTGGGGCATCAAACAGCTCCAGGCAAGAGTCCTGTCTGTGGAAAGATACCTACAGGATCAACAGCTCCTGGGGATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTACTGTGCCTTGGAATACTAGTTGGAGCAATAAATCTTACGATACCATCTGGGATAACATGACCTGGATGCAGTGGGACAGAGAAATTCAAAATTACACAGGGAAAATATACAACTTACTTGAGGAATCGCAAATCCAACAGGAAAAGAATGAAAAGGAATTATTAGAACTAGATCAATGGGCAAATTTGTGGAATTGGTTTAGTATAACAAAATGGCTGTGGTATATAAAAATATTCATAATGATAGTAGGAGGCTTAGTAGGTTTAAAAATAATTTTTGCTGTATTTTCTATAGTGAATAGAGTTAGGCAGGGATACTCACCATTATCATTGCAGACCCTCCTCCCAACCCCGAGGGGACCAGACAGGCCCGAAGGAATAGAAGAAGAAGGTGGAGAGAGAGACAGAGGCAGATCCGGAAGATTAGTGACTGGATTCTTACCACTCATCTGGGACGACCTGCGGAGCCTGTGCCTCTTCAGCTACCACCACTTGAGAGACTTACTCTTGATTGTGCTGAGGACTGTGCAAGTTCTGGGACACAGGGGGTGGGAGATCCTCAAGTACTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAACTAAAGAATAGTGCTGTTAGCTTGCTCAATACCATAGCTATCGCAGTAGCTGAGGGAACAGATAGGGTTATAGAGGTAGGACAAAGAATTGGCAGAGCTTTTCTCCACATACCTAGAAGGATAAGACAGGGATTAGAAAGGGCTTTGCAATAA +MN090335,tat_exon2,7739,7835,8376,8469,forward,0.3921568627450981,RPSSQPRGDQTGPKE,RPSSQPRGDQTGPKE*KKKVERETEADPED**,AGACCCTCCTCCCAACCCCGAGGGGACCAGACAGGCCCGAAGGAATAGAAGAAGAAGGTGGAGAGAGAGACAGAGGCAGATCCGGAAGATTAGTGA +MN090335,rev_exon2,7740,8016,8377,8653,forward,0.4267425320056898,DPPPNPEGTRQARRNRRRRWRERQRQIRKISDWILTTHLGRPAEPVPLQLPPLERLTLDCAEDCASSGTQGVGDPQVLVESPAVLDSGTKE,DPPPNPEGTRQARRNRRRRWRERQRQIRKISDWILTTHLGRPAEPVPLQLPPLERLTLDCAEDCASSGTQGVGDPQVLVESPAVLDSGTKE*,GACCCTCCTCCCAACCCCGAGGGGACCAGACAGGCCCGAAGGAATAGAAGAAGAAGGTGGAGAGAGAGACAGAGGCAGATCCGGAAGATTAGTGACTGGATTCTTACCACTCATCTGGGACGACCTGCGGAGCCTGTGCCTCTTCAGCTACCACCACTTGAGAGACTTACTCTTGATTGTGCTGAGGACTGTGCAAGTTCTGGGACACAGGGGGTGGGAGATCCTCAAGTACTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAACTAAAGAATAG +MN090335,nef,8159,8819,8796,9417,forward,0.4589954597048772,MGGKWSKGCMAGWPTVRERMERIDPRPAARREQAEPAAAGVGAASRDLEKYGAITSSNTSTTNAACAWLEAQEEEEVGFPVRPQVPLRPMTYKAALDLSHFLKEKGGLEGLIWSQRRQEILDLWVYHTQGYFPDWQNYTPGPGVRFPLTFGWCFKLVPVDPDQVEKANEGENNCLLHPMSLHGMEDSEGEVLMWKFDSSLAFHHRAREQHPEYYKDC,MGGKWSKGCMAGWPTVRERMERIDPRPAARREQAEPAAAGVGAASRDLEKYGAITSSNTSTTNAACAWLEAQEEEEVGFPVRPQVPLRPMTYKAALDLSHFLKEKGGLEGLIWSQRRQEILDLWVYHTQGYFPDWQNYTPGPGVRFPLTFGWCFKLVPVDPDQVEKANEGENNCLLHPMSLHGMEDSEGEVLMWKFDSSLAFHHRAREQHPEYYKDC*H*,ATGGGTGGCAAGTGGTCAAAAGGTTGTATGGCTGGATGGCCTACTGTAAGGGAAAGAATGGAAAGAATTGATCCAAGGCCTGCTGCAAGGAGGGAACAAGCTGAGCCAGCAGCAGCTGGGGTAGGAGCAGCATCTCGAGACTTGGAAAAATATGGAGCAATCACAAGTAGCAATACATCAACTACTAATGCTGCTTGTGCCTGGCTAGAAGCACAAGAGGAGGAGGAAGTAGGCTTTCCAGTCAGACCTCAGGTACCTTTAAGACCAATGACTTACAAAGCAGCTTTGGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTGGTCCCAGAGAAGACAAGAAATCCTTGATTTGTGGGTTTACCACACACAAGGATACTTCCCTGATTGGCAAAACTACACACCAGGACCAGGGGTCAGATTTCCACTGACCTTTGGATGGTGCTTCAAGCTAGTACCAGTTGATCCAGACCAAGTAGAGAAGGCCAATGAAGGAGAGAACAACTGCTTGCTACACCCTATGAGCCTGCATGGGATGGAAGACTCAGAGGGAGAAGTGTTAATGTGGAAGTTTGACAGCAGCCTGGCGTTTCATCATAGAGCCCGAGAACAACATCCGGAGTACTACAAAGACTGCTGACACTGA +MN090376,gag,376,1639,789,2292,forward,0.7780482566048544,MQTQIVRPF,MFCTIG*FWLTWLLFPGSAAACCVFFLLLFCSSSILSKASLVSFISIL*CTQ*RTATVLNNDLSSSDPV*SAGCSCPSICLQPSDVSNRPGLTANRSSSLLAHTICFNLYLFFPPGLNRIFSHLSNSPPLNTDALAPISLLLASASQKGVLTVRRPSPLAVRASASRVR*FWD*IK**ECIVLPAFWT*DKDQRNPLETM*IGSIKL*EPSKLHRR*KIG*QKPCWSRMQTQIVRPF*KHWVQQLH*KK**QHAREWEDPAIRQEFWRKQ*AK*QTQLP**CRKAILGAKERWLSVSIVAKKGT*PEIAGPLGKGAVGNVERKDTK*KIVLRDRQIF*GKSGLPTRGGQGTFLKAEQNQQPHQRRASVLGRRQQLLLRSRSR*TRNYTLCLPSNHSLATTLSHSKDRGATKGSSIRYRSR*,ATGTTCTGCACTATAGGGTAATTTTGGCTGACCTGGTTGCTATTTCCTGGGTCAGCTGCTGCTTGCTGTGTCTTTTTCTTACTTTTGTTTTGTTCTTCCTCTATCTTGTCTAAAGCTTCCTTGGTGTCTTTTATCTCTATCCTTTGATGCACACAATAGAGGACTGCTACTGTATTAAATAATGATTTAAGTTCCTCTGATCCTGTCTGAAGTGCTGGTTGTAGCTGTCCCAGTATTTGTCTACAGCCTTCTGATGTTTCTAACAGGCCAGGATTAACTGCGAATCGTTCCAGTTCCCTGCTTGCCCATACTATATGTTTTAACTTATATCTTTTCTTTCCCCCTGGCCTTAACCGAATTTTCTCCCATTTGTCTAATTCTCCCCCGCTTAATACCGACGCTCTCGCACCCATCTCTCTCCTTCTAGCCTCCGCTAGTCAAAAAGGCGTACTCACCGTTCGCCGCCCCTCGCCTCTTGCTGTGCGCGCTTCAGCAAGCCGAGTCCGATAATTCTGGGATTAAATAAAATAGTAAGAATGTATAGTCCTACCAGCATTCTGGACATAAGACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGATCGGTTCTATAAAACTCTAAGAGCCGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAGAATGCAAACCCAGATTGTAAGACCATTTTAAAAGCATTGGGTCCAGCAGCTACACTAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCCGGCCATAAGGCAAGAGTTTTGGCGGAAGCAATGAGCCAAGTAACAAACTCAGCTTCCGTGATGATGCAGAAAGGCAATTTTAGGAGCCAAAGAAAGATGGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGGAAAAGGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGATTGTACTGAGAGACAGGCAAATTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGGAGGCCAGGGAACTTTCCTCAAAGCAGAACAGAACCAACAGCCCCACCAGAGGAGAGCTTCAGTTTTGGGGAGAAGACAACAACTCCTTCTCAGAAGCAGGAGCCGATAGACCAGGAACTATACCCTCTGTCTTCCCTCAAATCACTCTTTGGCAACGACCCTTAGTCACAGTAAGGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGA +MN090376,pol,1382,4394,2084,5096,forward,0.23289665211062593,FFRENLAFPQGEARELSSKQNRTNSPTRGELQFWGEDNNSFSEAGADRPGTIPSVFPQITLWQRPLVTVRIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVKQYDQISVEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPRVKQWPLTEEKIKALTEICKEMEKEGKISKIGPENPYNTPIFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKVEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGAKALTEVVPLTEEAELELAENREILKEPVHGVYYDPTKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWESWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIIGAETFYVDGAANRETKSGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIQKEKVYLAWVPAHKGIGGNEQVDKLVSSGIRKVLFLDGIDKAQDEHEKYHSNWRAMASDFNIPPVVAKEIVACCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPNFTSNAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKQLKQIIGQVREQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDGCVASRQDED,FFRENLAFPQGEARELSSKQNRTNSPTRGELQFWGEDNNSFSEAGADRPGTIPSVFPQITLWQRPLVTVRIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVKQYDQISVEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPRVKQWPLTEEKIKALTEICKEMEKEGKISKIGPENPYNTPIFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKVEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGAKALTEVVPLTEEAELELAENREILKEPVHGVYYDPTKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWESWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIIGAETFYVDGAANRETKSGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIQKEKVYLAWVPAHKGIGGNEQVDKLVSSGIRKVLFLDGIDKAQDEHEKYHSNWRAMASDFNIPPVVAKEIVACCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPNFTSNAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKQLKQIIGQVREQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDGCVASRQDED*,TTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGGAGGCCAGGGAACTTTCCTCAAAGCAGAACAGAACCAACAGCCCCACCAGAGGAGAGCTTCAGTTTTGGGGAGAAGACAACAACTCCTTCTCAGAAGCAGGAGCCGATAGACCAGGAACTATACCCTCTGTCTTCCCTCAAATCACTCTTTGGCAACGACCCTTAGTCACAGTAAGGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTGTTAGAAGAAATGAGTTTACCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGCTTTATCAAAGTAAAACAGTATGATCAGATATCAGTAGAAATTTGTGGACATAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAATATAATTGGAAGAAATCTGTTGACTCAGATTGGTTGTACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAGAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAACAGAAATTTGTAAGGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAATATTTGCTATAAAGAAAAAAGACAGTACTAAATGGAGAAAGTTAGTAGATTTTAGAGAACTTAATAAGAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACACCCCGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCCTAGATGAAGACTTCAGGAAGTATACTGCATTTACCATACCTAGTACAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTACTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGACATAGTTATATATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAGTAGAGGAACTGAGACAACATCTGTTGAAGTGGGGGTTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTTCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATACAACTGCCAGAGAAAGACAGCTGGACTGTCAATGATATACAGAAATTAGTGGGAAAGTTGAATTGGGCAAGTCAGATTTATCCAGGGATTAAAGTAAGGCAGTTATGTAAACTACTTAGAGGAGCCAAGGCGCTGACAGAAGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATCCTAAAAGAACCAGTACATGGAGTGTATTATGACCCAACAAAAGACTTAATAGCAGAAATACAGAAGCAGGGGCAAGGTCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAACTTGAAAACAGGAAAATATGCAAGAACAAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAGCCACAGAAAGCATAGTAATATGGGGAAAGACCCCTAAATTTAGACTACCCATTCAAAAAGAAACATGGGAATCATGGTGGACAGAATATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAAAAAGAACCCATAATAGGAGCAGAGACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACAAAATCAGGAAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAAGTTATCTCCCTAACTGACACAACAAATCAGAAGACTGAGTTACAAGCAATTCATCTAGCTTTGCAGGATTCAGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAGGCACAACCAGATAAAAGCGAATCAGAGTTAGTCAATCAAATAATAGAGCAATTAATACAAAAGGAAAAGGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGGGGAAATGAACAAGTAGATAAATTAGTCAGTTCTGGAATCAGAAAGGTACTATTTTTGGATGGAATAGATAAAGCCCAAGATGAGCATGAAAAATATCACAGTAATTGGAGAGCAATGGCTAGTGACTTTAACATACCACCTGTAGTAGCAAAAGAAATAGTAGCCTGCTGTGATAAATGTCAGCTAAAAGGAGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAATTAGATTGTACACATTTAGAAGGAAAAATTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGACAGGAAACAGCATACTTTCTCTTAAAATTAGCAGGAAGATGGCCAGTAACAACAATACATACAGACAATGGCCCCAACTTCACCAGTAATGCAGTTAAGGCCGCCTGTTGGTGGGCAGGGGTCAAACAAGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTCGTAGAATCTATGAATAAACAATTAAAACAAATTATAGGACAGGTAAGAGAGCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAATAGACATAATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAGGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTGGTAATACAAGATAATAGTGACATAAAAGTAGTACCAAGAAGAAAAGCAAAAATTATTAGGGATTATGGAAAACAGATGGCAGGTGATGGTTGTGTGGCAAGTAGACAGGATGAGGATTAG +MN090376,vif,4338,4929,5040,5619,forward,0.4025296125276049,MENRWQVMVVWQVDRMRISMWKSLVKYHIHNSGKARGWCYRHHYESRHPRISSEVHIPLGGEARLVVTTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPDLADQLIHLYYFNCFSESAIRQAILGHRVSPRCEYQAGHNKVGSLQYLALIALIPPKRKKPPLPSVRKLTEDRWKEPQRTKGHRESHTMNGH,MENRWQVMVVWQVDRMRISMWKSLVKYHIHNSGKARGWCYRHHYESRHPRISSEVHIPLGGEARLVVTTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPDLADQLIHLYYFNCFSESAIRQAILGHRVSPRCEYQAGHNKVGSLQYLALIALIPPKRKKPPLPSVRKLTEDRWKEPQRTKGHRESHTMNGH*NF*,ATGGAAAACAGATGGCAGGTGATGGTTGTGTGGCAAGTAGACAGGATGAGGATTAGCATGTGGAAAAGCTTAGTAAAATACCATATACATAATTCAGGGAAGGCTAGGGGATGGTGTTATAGACATCACTATGAAAGCAGACATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGAGGAGAGGCTAGACTAGTAGTGACAACATATTGGGGACTGCATACAGGAGAAAGAGACTGGCATTTGGGTCAAGGAGTCTCCATAGAATGGAGGAAAAGGAGATATAGCACACAAGTAGACCCTGACCTAGCAGACCAACTAATTCATCTGTATTATTTTAATTGTTTTTCAGAATCTGCTATAAGACAAGCCATATTAGGACATAGAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAATAAGGTAGGATCTCTGCAGTACTTGGCACTAATAGCATTAATACCACCAAAAAGGAAAAAGCCACCTTTGCCTAGTGTGAGGAAACTGACAGAGGATAGATGGAAAGAGCCCCAGAGGACCAAGGGCCACAGAGAGAGCCATACAATGAATGGACACTAGAACTTTTAG +MN090376,vpr,4859,5153,5558,5850,forward,0.41636495293265796,MERAPEDQGPQREPYNEWTLELLEELKREAVRHFPRAWLHGLGQHIYETYGDTWAGVEALIRILQQLVFIHFRIGCQHSRIGILTHRRARNGASRS,MERAPEDQGPQREPYNEWTLELLEELKREAVRHFPRAWLHGLGQHIYETYGDTWAGVEALIRILQQLVFIHFRIGCQHSRIGILTHRRARNGASRS*T,ATGGAAAGAGCCCCAGAGGACCAAGGGCCACAGAGAGAGCCATACAATGAATGGACACTAGAACTTTTAGAAGAGCTTAAAAGAGAAGCTGTTAGGCACTTTCCTAGGGCTTGGCTTCATGGCCTAGGACAACATATCTATGAAACTTATGGAGATACTTGGGCAGGAGTGGAAGCTCTAATAAGAATTCTGCAACAACTGGTGTTTATTCATTTCAGAATTGGATGTCAGCACAGCAGGATAGGCATTCTTACCCATAGAAGAGCAAGAAATGGAGCCAGTAGATCCTAGACT +MN090376,tat_exon1,5130,5346,5830,6045,forward,0.484764542936288,MEPVDPRLEPWKHPGSQPRTACTSCYCKKCCYHCPRCFLTKGLGISYGRKKRRQRRRTPQDSRNHQVSLSKQ,MEPVDPRLEPWKHPGSQPRTACTSCYCKKCCYHCPRCFLTKGLGISYGRKKRRQRRRTPQDSRNHQVSLSKQ,ATGGAGCCAGTAGATCCTAGACTGGAGCCCTGGAAGCATCCAGGGAGTCAGCCTAGGACTGCGTGCACCAGTTGCTATTGTAAAAAGTGTTGCTATCATTGCCCGCGATGCTTCTTAACAAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAACTCCTCAGGATAGCCGGAACCATCAAGTTTCTTTATCAAAGCAG +MN090376,rev_exon1,5269,5347,5969,6045,forward,0.538373424971363,MAGRSGDSDEELLRIAGTIKFLYQSS,MAGRSGDSDEELLRIAGTIKFLYQSS,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAACTCCTCAGGATAGCCGGAACCATCAAGTTTCTTTATCAAAGCAGT +MN090376,vpu,5361,5631,6061,6310,forward,0.5328923190003676,MQSLEILAIVALVVAFIIAIVVWSIVLIEYRKIRRQKRIDRILDRIRERAEDSGNESEGDQEELAALVEMGNHAHLDMGHHAPWDVNDL,MQSLEILAIVALVVAFIIAIVVWSIVLIEYRKIRRQKRIDRILDRIRERAEDSGNESEGDQEELAALVEMGNHAHLDMGHHAPWDVNDL*,ATGCAATCTTTAGAAATATTAGCAATAGTAGCATTAGTAGTAGCATTTATAATAGCAATAGTCGTTTGGTCTATAGTACTCATAGAATATAGGAAAATAAGAAGACAAAAGAGAATAGACAGGATACTTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGGGACCAAGAAGAATTGGCAGCCCTCGTGGAGATGGGGAACCATGCTCATTTGGATATGGGCCACCATGCTCCTTGGGATGTCAATGACCTGTAA +MN090376,env,5524,8137,6224,8795,forward,0.4693967327188021,MRVKGTKKNWQPSWRWGTMLIWIWATMLLGMSMTCNAEDSWVTVYYGVPVWKEAATTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVELNVTENFNAWKNNMVDQMHEDIISLWDQSLKPCVKLTPLCVTLNCTNINSTNINNTNSIEREMTNCSFNVTTVIRDKVQKQYALFYKLDVVQIKDDNTSYNTSYRLINCNSSTITQACPKVSFEPIPIHYCAPAGFAILKCKDKNFNGTGLCKNVSTVQCTHGIRPVVSTQLLLNGSLAEGDVVIRSKNFSNSAQTIIVQLNETVEINCTRPNNNTRRSIHIGPGRAFYATGDIIGDIRQAHCNISRAKWNETLKKIADKLREQFKRETIVFNQSSGGDPEIVMHSFNCRGEFFYCNTTQLFNSTWNSTTGVNGTGANNTEVNIITLPCKIRQIVNMWQEVGKAMYAPPISGQISCSSNITGLLLLRDGGNSNDTDNTTEIFRPGGGDMRDNWRSELYKYKVVQIEPLGVAPTKARRRVVQREKRAVGIGALFLGFLGAAGSTMGAASITLTVQARHLLSGIVQQQNNLLRAIEAQQHMLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTNVPWNSSWSNKNLSYIWNNMTWMQWEKEIDNYTEEIYNLIEQSQNQQEKNEQELLELDKWASLWNWFDITKWLWYIKIFIMIVGGLIGLRIVFTVLSIVNRVRQGYSPLSFQTLLPAARGPDRPEGIGEEGGERDRDRSSHLAHGFLTIIWVDLRSLFLFSYHHLRDLLLIVARGVELLGRRGWEALKYWWNLLQYWSQELKNSAVSLLNATAIAVAEGTDRFIEVLQRIFRAIIHIPTRIRQGLERALL,MRVKGTKKNWQPSWRWGTMLIWIWATMLLGMSMTCNAEDSWVTVYYGVPVWKEAATTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVELNVTENFNAWKNNMVDQMHEDIISLWDQSLKPCVKLTPLCVTLNCTNINSTNINNTNSIEREMTNCSFNVTTVIRDKVQKQYALFYKLDVVQIKDDNTSYNTSYRLINCNSSTITQACPKVSFEPIPIHYCAPAGFAILKCKDKNFNGTGLCKNVSTVQCTHGIRPVVSTQLLLNGSLAEGDVVIRSKNFSNSAQTIIVQLNETVEINCTRPNNNTRRSIHIGPGRAFYATGDIIGDIRQAHCNISRAKWNETLKKIADKLREQFKRETIVFNQSSGGDPEIVMHSFNCRGEFFYCNTTQLFNSTWNSTTGVNGTGANNTEVNIITLPCKIRQIVNMWQEVGKAMYAPPISGQISCSSNITGLLLLRDGGNSNDTDNTTEIFRPGGGDMRDNWRSELYKYKVVQIEPLGVAPTKARRRVVQREKRAVGIGALFLGFLGAAGSTMGAASITLTVQARHLLSGIVQQQNNLLRAIEAQQHMLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTNVPWNSSWSNKNLSYIWNNMTWMQWEKEIDNYTEEIYNLIEQSQNQQEKNEQELLELDKWASLWNWFDITKWLWYIKIFIMIVGGLIGLRIVFTVLSIVNRVRQGYSPLSFQTLLPAARGPDRPEGIGEEGGERDRDRSSHLAHGFLTIIWVDLRSLFLFSYHHLRDLLLIVARGVELLGRRGWEALKYWWNLLQYWSQELKNSAVSLLNATAIAVAEGTDRFIEVLQRIFRAIIHIPTRIRQGLERALL*NGRHILKT*,ATGAGAGTGAAGGGGACCAAGAAGAATTGGCAGCCCTCGTGGAGATGGGGAACCATGCTCATTTGGATATGGGCCACCATGCTCCTTGGGATGTCAATGACCTGTAATGCAGAGGACTCGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAAAGAAGCAGCCACCACTCTATTTTGTGCATCAGATGCCAAAGCATATGACACAGAGGTACACAATGTCTGGGCCACACATGCTTGTGTACCCACAGACCCCAACCCACAAGAAGTAGAATTAAATGTAACAGAAAATTTTAATGCATGGAAAAATAACATGGTAGATCAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAACTGCACTAACATCAATAGCACTAATATAAACAATACCAATAGTATAGAAAGAGAAATGACAAACTGCTCTTTTAATGTCACCACAGTCATAAGAGATAAGGTGCAAAAACAATATGCACTTTTTTATAAACTTGATGTAGTACAAATTAAGGATGATAATACCAGCTATAATACCAGCTATAGGTTGATAAATTGTAACTCCTCAACCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAGGATAAGAATTTCAATGGAACAGGACTATGTAAAAATGTTAGCACAGTACAATGTACACATGGAATTAGGCCAGTAGTATCAACTCAACTGTTGTTAAATGGCAGTCTAGCAGAAGGAGATGTAGTAATTAGATCTAAAAATTTCTCTAACAGTGCTCAAACCATAATAGTACAATTAAACGAAACTGTAGAAATTAATTGTACAAGACCCAACAATAATACAAGAAGAAGTATACATATAGGACCAGGGAGAGCATTTTATGCAACAGGAGACATAATAGGAGATATAAGACAAGCACATTGTAACATTAGTAGAGCAAAATGGAATGAGACTTTAAAAAAGATAGCTGATAAATTAAGGGAACAATTTAAAAGAGAGACAATAGTCTTTAACCAATCCTCAGGAGGGGACCCAGAGATTGTAATGCACAGTTTTAATTGTAGAGGGGAATTTTTCTACTGTAATACAACACAACTGTTTAATAGTACTTGGAATAGTACTACAGGAGTAAATGGTACAGGAGCAAATAACACAGAAGTAAATATTATCACACTCCCATGCAAGATAAGGCAAATTGTAAACATGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCATCAGTGGACAAATTAGTTGTTCATCAAATATTACAGGGCTACTACTACTAAGAGATGGTGGTAATAGCAATGACACGGATAACACGACTGAAATCTTCAGACCTGGAGGAGGAGATATGAGGGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTACAAATTGAACCATTAGGAGTAGCACCCACCAAGGCAAGGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTCTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCATCAATAACGCTGACGGTACAAGCCAGACATTTATTGTCTGGTATAGTGCAACAGCAGAACAATTTGCTGAGAGCTATTGAGGCGCAACAGCATATGTTGCAGCTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTAGAAAGATACCTTAAGGATCAACAGCTCCTGGGGATTTGGGGTTGCTCTGGAAAACTCATCTGCACCACTAATGTGCCTTGGAATAGTAGTTGGAGTAATAAAAATCTGAGTTACATTTGGAATAACATGACCTGGATGCAGTGGGAAAAAGAAATTGACAATTACACAGAGGAAATATACAACTTAATTGAACAATCGCAAAACCAGCAAGAAAAGAATGAACAAGAATTATTGGAATTGGATAAATGGGCAAGTTTGTGGAATTGGTTTGACATAACAAAGTGGCTGTGGTATATAAAAATATTTATAATGATAGTAGGAGGCTTAATAGGTTTAAGAATAGTTTTTACTGTACTTTCTATAGTGAATAGAGTTAGGCAGGGATACTCACCATTATCGTTTCAGACCCTCCTCCCAGCCGCGAGGGGACCCGACAGGCCCGAAGGAATCGGAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCAGTCACTTAGCGCATGGATTCTTAACAATTATCTGGGTCGACCTGCGGAGCCTGTTCCTCTTCAGTTACCACCACTTGAGAGACTTACTCTTGATTGTAGCGAGGGGTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAGTATTGGTGGAATCTCCTGCAGTATTGGAGCCAGGAACTAAAGAATAGTGCTGTCAGCTTGCTCAACGCCACAGCCATAGCAGTAGCTGAGGGGACAGATAGGTTTATAGAAGTATTGCAAAGAATTTTTAGAGCTATTATCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCTTTGCTATAAAATGGGAGGCATATTCTCAAAACGTAA +MN090376,tat_exon2,7691,7784,8376,8469,forward,0.439759036144578,RPSSQPRGDPTGPKESEKKVERETETDPVT,RPSSQPRGDPTGPKESEKKVERETETDPVT*,AGACCCTCCTCCCAGCCGCGAGGGGACCCGACAGGCCCGAAGGAATCGGAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCAGTCACTTAG +MN090376,rev_exon2,7692,7968,8377,8653,forward,0.4267425320056898,DPPPSREGTRQARRNRRRRWRERQRQIQSLSAWILNNYLGRPAEPVPLQLPPLERLTLDCSEGCGTSGTQGVGSPQVLVESPAVLEPGTKE,DPPPSREGTRQARRNRRRRWRERQRQIQSLSAWILNNYLGRPAEPVPLQLPPLERLTLDCSEGCGTSGTQGVGSPQVLVESPAVLEPGTKE*,GACCCTCCTCCCAGCCGCGAGGGGACCCGACAGGCCCGAAGGAATCGGAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCAGTCACTTAGCGCATGGATTCTTAACAATTATCTGGGTCGACCTGCGGAGCCTGTTCCTCTTCAGTTACCACCACTTGAGAGACTTACTCTTGATTGTAGCGAGGGGTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAGTATTGGTGGAATCTCCTGCAGTATTGGAGCCAGGAACTAAAGAATAG +MN090376,nef,8111,8735,8796,9417,forward,0.5282692069776047,MGGIFSKRNGGGWPAIRERMRRAQPAADGVGAASRDLERHGALTSNNTSANNADCAWLEAQEEGEEVGFPVRPQVPLRPMTYKGAVDLSHFLKEKGGLEGLIYSQQRQDILDLWVYNTQGYFPDWQNYTPGPGIRYPLTFGWCFKLVPMEPEDVEKATEGEDNILLHPVNQHGMDDSEREVLVWKFDSRLAFRHVAREIHPEYYKNC,MGGIFSKRNGGGWPAIRERMRRAQPAADGVGAASRDLERHGALTSNNTSANNADCAWLEAQEEGEEVGFPVRPQVPLRPMTYKGAVDLSHFLKEKGGLEGLIYSQQRQDILDLWVYNTQGYFPDWQNYTPGPGIRYPLTFGWCFKLVPMEPEDVEKATEGEDNILLHPVNQHGMDDSEREVLVWKFDSRLAFRHVAREIHPEYYKNC*,ATGGGAGGCATATTCTCAAAACGTAATGGGGGTGGGTGGCCTGCAATAAGGGAAAGAATGAGACGAGCTCAGCCAGCAGCAGATGGGGTAGGAGCAGCATCTCGAGACCTGGAAAGACATGGAGCTCTCACAAGTAACAATACATCAGCTAACAATGCTGATTGTGCCTGGCTGGAAGCACAGGAAGAGGGGGAAGAAGTGGGTTTCCCAGTCAGACCTCAGGTACCTTTAAGACCAATGACATACAAGGGAGCTGTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGTTAATTTACTCCCAACAAAGACAAGATATCCTTGATCTGTGGGTCTACAACACACAGGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGATAAGATATCCACTGACCTTTGGATGGTGCTTCAAGCTAGTACCAATGGAACCAGAGGATGTAGAAAAGGCCACTGAAGGAGAGGACAACATCTTGTTACACCCTGTGAACCAGCATGGGATGGACGACTCAGAGAGAGAAGTGTTAGTGTGGAAGTTTGACAGCCGCCTAGCATTCCGTCACGTGGCCCGAGAGATACATCCGGAGTACTACAAGAACTGCTGA +MK115581.1,gag,680,2186,789,2292,forward,0.2932056543547651,MGARASILSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWTTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSANVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE,MGARASILSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWTTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSANVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE*R*,ATGGGTGCGAGAGCGTCAATATTAAGCGGGGGAAAATTAGATGCATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATTTAGTATGGGCAAGCAGGGAGCTAGAACGATTTGCCGTTAACCCTGGCCTGTTAGAAACATCAGAGGGATGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATTTAATGCAGTAGCAGTCCTCTATTGTGTACATCAAAGGATACAGGTACAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGTAGCAGCAGCTGACACTGACACAGGAAACAGCAGCCAAAATTACCCCATAGTGCAGAACCTCCAGGGGCAAATGGTACATCAGCCCCTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAAAAGGCCTTCAGCCCAGAAGTCATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGACGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCTTGGGATTAAATAAAATAGTAAGGATGTATAGCCCTACCAGTATTCTGGATATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAGAACTTTAAGAGCTGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATTCGAATCCAGATTGTAAGACTATTTTAAAAGCATTAGGACCAGCAGCAACACTAGAGGAAATGATGACAGCATGTCAAGGAGTGGGGGGACCAGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAAATTCAGCTAATGTAATGATGCAGAGAGGCAATTTTAGAAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACATCAAATGAAAGACTGTACAGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAG +MK115581.1,pol,1972,4984,2084,5096,forward,0.1922427454342348,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSTGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSTGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAGGGGGGCAATTTAAAGAAGCTTTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACCCATAGAAATCTGTGGACACAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGCTTGGTTGTACCTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTCAATAAGAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAATTCCCTTAGATAAAGAATTCAGGAAGTATACTGCATTTACCATACCTAGTACAAATAATGAGACACCAGGGATTAGGTATGAGTACAATGTGCTGCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGCAAAATCCAGATATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAACTGAGACAACATCTGTTAAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAGTGGACAGTACAGCCTATAATACTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTACGCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAGGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTTTAAGAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGCAATGGACAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTACAAAAGATAGCCACAGAAAGCATAGTAATATGGGGAAAAACTCCTAAATTTAGACTACCTATACAAAAAGAAACATGGGAGACATGGTGGGCAGAGTACTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAATTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACTAAATTAGGCAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAGGTTATCTCCCTAACGGACACAACAAATCAAAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATCAGAAGTAAACATAGTAACAGACTCACAATATACATTAGGAATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAATCAGATAATAGAGCAGTTAATAAAAAAGGAAAAAGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGACAAACTAGTCAGTACTGGAGTCAGGAGAGTACTATTTCTAGATGGAATAGATAAGGCCCAAGAAGACCATGAGAAATATCACAGTAATTGGAGAGCAATGGCTGGTGATTTTAATATACCCCCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCAAAAAGGAGAGGCCATGCATGGACAAGTAGATTGTAGTCCAGGAATATGGCAACTAGATTGTACACATCTAGAAGGGAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTCTCCTGAAACTAGCAGGGAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTAATGTGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCCATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTATAGTGCAGGGGAAAGAATAGTAGATATAATAGCAACAGACCTACAAACTAAAGAATTACAGAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGGAGAAAAGCAAAAATCATTAGGGATTATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG +MK115581.1,vif,4928,5507,5040,5619,forward,0.36355859709153127,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH*,ATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATGTTTCAAAGAAAACTAAAGGATGGTTTTATAGACATCACTATGAAAGCACTCATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTGGTAGTAACAACATATTGGGGCCTGAATACAGGAGAAAGAGAATGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGAAAAAGGAAATATAGCACACAAGTTGACCCTAACCTAGCAGACCAACTAATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACATATAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGCTCTCTACAATACTTGGCACTAAAAGCATTAACAACACCAAAGAGAAGAAAGCCACCTTTACCTAGTGTTAGGAAACTGACAGAGGATAGATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAG +MK115581.1,vpr,5446,5740,5558,5850,forward,0.39444027047332864,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS*T,ATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAGAGCTTTTAGAGGAACTTAAGAATGAAGCGGTTAGACATTTTCCTAGGCCGTGGCTCCATGGCTTAGGACAACATATCTATGAAACTTATGGGGACACTTGGACAGGAGTGGAGGCCATAATAAGAACCCTGCAACAACTGCTGTTTATTCATTTCAGACTTGGGTGTCGACATAGCAGAATAGGCATTGTGCCACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACT +MK115581.1,tat_exon1,5717,5936,5830,6045,forward,0.31992687385740404,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ*,ATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCACCCAGGAAGTCAGCCTAAAACTCCTTGTACTAACTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAAAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGTAA +MK115581.1,rev_exon1,5856,5934,5969,6045,forward,0.48200514138817474,MAGRSGDSDEELLKAVRLIKILYQSS,MAGRSGDSDEELLKAVRLIKILYQSS,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGT +MK115581.1,vpu,5948,6194,6061,6310,forward,0.5254806794847863,MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAKDSGNESEGDQEELSALMEMGHHAPGDVDDL,MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAKDSGNESEGDQEELSALMEMGHHAPGDVDDL*,ATGCAACCTCTGCACATAGCAGCAATAGTAGGATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGACCATAGTGTTAATAGAATATAGGAAAATATTAAGACAAAAAAGGATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAAAAGACAGTGGCAATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAG +MK115581.1,env,6111,8652,6224,8795,forward,0.4421225244922844,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEAHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRNKMQKEYALFYKLDVVPIDNDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYENKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSETETFRPGGGDMKDNWRSELYKYKVEKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEAHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRNKMQKEYALFYKLDVVPIDNDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYENKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSETETFRPGGGDMKDNWRSELYKYKVEKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL*,ATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTGACAGTCTATTATGGGGTACCTGTATGGAAAGAAGCAAACACCACTCTATTTTGTGCATCGGATGCTAAAGCATATACCACAGAGGCACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGGATTGGAAAATGTGACAGAAAATTTTAACATGTGGAAAAATAACATGGTAGAACAGATGCATGAGGATGTAATCAATTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCACTAATCTGAATGTTACTAATACCAATAGCAGTAGTGAGGAGGGAAAGATGGCGGAAGAAATGAGAAACTGCTCTTTCAATATCACCACAAAAATAAGAAATAAGATGCAGAAGGAATATGCACTTTTTTATAAACTTGATGTAGTACCAATAGATAATGATAATACAAGTTATACATTGATAAATTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCTATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAGGATAAGAAGTTCAATGGATCAGGACCATGTAAAAATGTCAGCACAGTACAATGTACACATGGAATTAAGCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTTTAGCAGAAGAAGAGGTAGTAATTAGATCTGAAAATTTCACGAACAATGCTAAAACCATAATAGTACATCTGAAGGAACCTATACAAATTAATTGTACAAGACCCAACAACAATACAATGAAAAGTATCCCTCTAGGACCAGGAAGAGCATTCTATGCAACAGGAGCCATAATAGGAGATATAAGACAAGCACATTGTAACCTTAGTAGAAAAGCATGGAATAATACTTTAAAACAGGTAGTTGAAAAATTAAAAGAACAATATGAGAATAAAACAATAATCTTTAATCACTCCTCAGGAGGGGACCCAGAAATTATAATGCATACTTTTAATTGTGGAGGGGAATTTTTCTATTGTAATACAACACAGCTGTTTAATAGTACTTGGAATAGTACTTGGACTGGGAATGCTACCGAATTAGATGGAAACATCACACTCCCATGCAGAATAAAACAGATTATAAACAGGTGGCAAGAAGTAGGAAAAGCAATGTATGCCCCTCCCATTAGAGGAAAAATTAGATGTTCATCAAATATTACAGGGTTACTATTAGTAAGAGATGGTGGTAACACGAGCGAGACTGAGACCTTCAGACCTGGAGGAGGAGATATGAAGGACAATTGGAGGAGTGAATTATATAAATATAAAGTAGAAAAAATTGAGCCATTAGGAGTAGCACCCACCAGGGCAAAGAGAAGAGTGGTGCAAAGAGAAAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAAGCCAGGCTGTTATTGTCTGGTATAGTGCAACAGCAAAACAATTTGCTGAGAGCTATTGAGGCGCAACAACATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTACAGGATCAACAGCGCCTGGGAATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCCTGGAATGCTAGTTGGAGTAATAAATCTCTGAATCAGATTTGGGATAACATGACCTGGATGGAGTGGGAAAGAGAAATTAACAATTACACAGACACAATATACACCTTAATTGAAAAGGCGCAGAACCAGCAGGAAAAAAATGAACAAGAATTATTGGAATTGGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAAATGGCTGTGGTACATAAAATTATTCATAATGATAGTAGGAGGATTGATAGGTTTAAGAATAGTTTTTGCTGTACTTGCTATAGTAAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGCCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAGCTTATTCAATGTCACAGCCATCGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAAGAGCTTGTAGAGCTCTTCTCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCATTGTTATAA +MK115581.1,tat_exon2,8233,8329,8376,8469,forward,0.3161764705882347,RPTSQPRGDPTGPKESKKKVEKETETDQFD,RPTSQPRGDPTGPKESKKKVEKETETDQFD**,AGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGA +MK115581.1,rev_exon2,8234,8519,8377,8653,forward,0.38952607660679506,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVPLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVPLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE*CY*,GACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGCCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAG +MK115581.1,nef,8653,9274,8796,9417,forward,0.49848743916874616,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPMSLHGMEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPMSLHGMEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC*H*,ATGGGGGGCAAGTGGTCAAAAAGTAGTGGGGGTGGATGGCCTGCTGTAAGGGAAAGAATGAGACGAACTGAGCCAGCAGCAGAAGGGGTGGGAGCAGTATCTCGAGACCTGGAAAGACATGGAGCAGTCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGCGCCTGGCTGGAAGCACAAGAAGAGGACAGTGAAGTGGGTTTTCCAGTCAGACCTCAGGTGCCTTTAAGACCAATGACTTTCAAAGGAGCTCTCGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCCCAAAAAAGACAAGATATCCTTGACCTGTGGGTCTACAACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGACCAGATATCCACTGACCTTTGGGTGGTGTTTCAAGCTAGTACCAGTGGAGCCAGAAGAGGCCAATCAAGGAGAGAACAACTGCTTGTTACACCCTATGAGCCTGCATGGGATGGAGGACCCGGAAAAAGAAGTATTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCACATGGCCCGAGAGAAGCATCCGGAGTACTACAAAGACTGCTGACATTGA +MK115690.1,gag,777,2292,789,2292,forward,0.23400049419322955,MGARASVLSGGELDKWEKIRLRPGGKKKYRLKHIVWASRELERFAVNPGLLETSEGCRQIMGQLQPALQTGSEELRSLYNTVATLYCVHQRIEVKDTKEALEKVEEEQNKSKKKAQQAAAGAGNSSQTSTSQNYPIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQATNSAAIMMQRGNFRNQRKSVKCFNCGKDGHIAKNCRAPRRKGCWKCGKEGHQMKDCPERQANFLGKIWPSHKGRPGNFLQNRPEPTAPPEESFRFGEETTTPSQKQEKIDQDLYPLASLKSLFGNDPSSQ,MGARASVLSGGELDKWEKIRLRPGGKKKYRLKHIVWASRELERFAVNPGLLETSEGCRQIMGQLQPALQTGSEELRSLYNTVATLYCVHQRIEVKDTKEALEKVEEEQNKSKKKAQQAAAGAGNSSQTSTSQNYPIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQATNSAAIMMQRGNFRNQRKSVKCFNCGKDGHIAKNCRAPRRKGCWKCGKEGHQMKDCPERQANFLGKIWPSHKGRPGNFLQNRPEPTAPPEESFRFGEETTTPSQKQEKIDQDLYPLASLKSLFGNDPSSQ*R*,ATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAGAATTAGACAAGTGGGAAAAAATTCGGTTGAGGCCAGGGGGAAAGAAAAAATATAGATTAAAGCATATCGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTTAACCCTGGCCTGTTAGAAACATCAGAAGGCTGTAGACAAATAATGGGACAGCTACAACCAGCCCTTCAGACAGGATCAGAAGAACTTAGATCATTGTATAATACAGTAGCAACCCTCTATTGTGTACATCAAAGGATAGAGGTAAAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAAGCACAGCAAGCAGCAGCTGGCGCAGGAAACAGCAGTCAGACCAGCACCAGCCAAAATTACCCTATAGTACAGAACATTCAGGGGCAAATGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTCTCAGCACTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTACATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAGCCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGGATGGATGACTAATAATCCACCTATCCCAGTAGGAGAAATTTATAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGAATGTATAGCCCCACCAGCATTCTAGACATAAGACAAGGACCAAAGGAGCCCTTTAGAGACTATGTAGATCGGTTCTATAAAACTCTAAGAGCCGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTAGTCCAAAATGCGAACCCAGATTGTAAGACTATTTTAAAAGCATTGGGTCCAGCAGCTACACTAGAGGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCCGGTCATAAAGCAAGAGTTTTAGCGGAAGCAATGAGCCAAGCAACAAATTCAGCTGCCATAATGATGCAGAGAGGCAATTTTAGGAACCAAAGAAAAAGTGTTAAGTGTTTTAATTGCGGCAAAGATGGGCACATAGCAAAAAATTGCAGGGCCCCTAGAAGAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGATTGTCCAGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGGAGGCCAGGGAATTTTCTTCAGAACAGACCAGAGCCAACAGCCCCACCAGAGGAGAGCTTCAGGTTTGGGGAGGAGACAACAACTCCCTCTCAGAAGCAGGAGAAGATAGACCAGGACCTGTATCCTTTAGCTTCCCTCAAATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGGTAG +MK115690.1,pol,2078,5090,2084,5096,forward,0.18376079594676187,FFRENLAFPQGEAREFSSEQTRANSPTRGELQVWGGDNNSLSEAGEDRPGPVSFSFPQITLWQRPLVTIKVGGQLKEALLDTGADDTVLEDMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGVRYQYNVLPQGWKGSPAIFQSSMTKILEPYRKQNPNIVIYQYMDDLYVGSDLEIGQHRIKIEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIALPEKESWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGAKALTEVIPLTKEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQEQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKSGKAGYVTNRGRQKVIPLTDTTNQKTELHAIYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQEAAYFILKLAGRWPVATIHTDNGSNFTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDVIATDLQTKELQKQITKIQHFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSEIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED,FFRENLAFPQGEAREFSSEQTRANSPTRGELQVWGGDNNSLSEAGEDRPGPVSFSFPQITLWQRPLVTIKVGGQLKEALLDTGADDTVLEDMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGVRYQYNVLPQGWKGSPAIFQSSMTKILEPYRKQNPNIVIYQYMDDLYVGSDLEIGQHRIKIEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIALPEKESWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGAKALTEVIPLTKEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQEQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKSGKAGYVTNRGRQKVIPLTDTTNQKTELHAIYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQEAAYFILKLAGRWPVATIHTDNGSNFTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDVIATDLQTKELQKQITKIQHFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSEIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGGAGGCCAGGGAATTTTCTTCAGAACAGACCAGAGCCAACAGCCCCACCAGAGGAGAGCTTCAGGTTTGGGGAGGAGACAACAACTCCCTCTCAGAAGCAGGAGAAGATAGACCAGGACCTGTATCCTTTAGCTTCCCTCAAATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGGTAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGACATGAGTTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAAATACTCATAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGATTGGTTGCACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGCACAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATAGGGCCTGAGAATCCATACAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGACTTCAGAGAACTAAATAAGAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCCGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCCTATTTTTCAGTTCCCTTAGACAAAGACTTCAGGAAGTATACTGCATTTACCATACCTAGTATAAACAATGAGACACCAGGGGTTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAACCTTATAGAAAACAAAATCCAAACATAGTTATATATCAATACATGGATGATTTGTATGTAGGATCTGACCTAGAAATAGGGCAGCATAGAATAAAAATAGAAGAACTGAGACAACATCTGTTGAAGTGGGGATTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGGTATGAACTCCATCCTGACAAGTGGACAGTACAGCCTATAGCGCTGCCAGAAAAAGAAAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTGAACTGGGCAAGTCAGATCTACCCAGGAATTAAAGTAAGGCAATTATGTAAACTACTTAGGGGAGCCAAAGCACTAACAGAAGTAATACCACTAACAAAAGAAGCAGAGCTAGAATTAGCAGAAAACAGGGAGATTCTAAAAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAGCAGGAGCAAGGCCAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTGACAGAGGCAGTGCAAAAAATAGCCACAGAAAGCATAGTGATATGGGGAAAGACTCCTAAATTTAGACTACCCATACAAAAAGAAACATGGGAAGCATGGTGGACAGAATATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTAAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAACAGGGAAACTAAATCAGGAAAAGCAGGATATGTTACTAATAGAGGAAGACAAAAAGTTATCCCCCTAACTGACACAACAAATCAGAAGACTGAGTTACATGCAATTTATCTAGCTTTGCAAGATTCGGGATTAGAAGTAAATATAGTAACAGACTCACAGTATGCATTAGGAATCATTCAAGCACAACCAGATAAAAGTGAATCAGAGTTAGTCAGTCAAATAATAGAGCAGTTAATAAAAAAGGAAAAGGTCTATCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTGCTGGAATCAGGAAAGTACTGTTTTTAGATGGAATAGATAAGGCCCAAGAAGACCATGAGAAATATCACAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTGGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGAGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAACTAGATTGTACACATTTAGAAGGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTCATTCCAGCAGAGACAGGGCAGGAAGCAGCATACTTTATTTTAAAATTAGCAGGACGATGGCCAGTAGCAACAATACATACAGACAATGGCAGCAATTTCACCAGTGCTACAGTTAAGGCCGCCTGCTGGTGGGCAGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAACAATGAATTGAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAGTAGACGTAATAGCAACAGACTTACAAACTAAAGAACTACAAAAACAAATTACAAAAATTCAACATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTCCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGAAATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATTATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG +MK115690.1,vif,5034,5622,5040,5619,forward,0.3927769842889206,MENRWQVMIVWQVDRMRIRRWHSLVKHHIYISGKARGWVYKHHYENTHPRISSKVYIPLGEARLAVTTYWGLHTGERDWHLGQGVSIEWRKKEYSTQVDPNLADQLIHLYYFDCFSESAIRNVILGHRVSPRCEYQAGHNKVGSLQYLALTALVTPKKTKPPLPSITKLTEDRWNKPQRTKGHRGNHTMNGH,MENRWQVMIVWQVDRMRIRRWHSLVKHHIYISGKARGWVYKHHYENTHPRISSKVYIPLGEARLAVTTYWGLHTGERDWHLGQGVSIEWRKKEYSTQVDPNLADQLIHLYYFDCFSESAIRNVILGHRVSPRCEYQAGHNKVGSLQYLALTALVTPKKTKPPLPSITKLTEDRWNKPQRTKGHRGNHTMNGH*SF*,ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAAGATGGCACAGTTTAGTAAAACACCATATATATATTTCAGGGAAAGCTAGAGGATGGGTTTATAAACATCACTATGAAAACACTCATCCAAGAATAAGTTCAAAAGTATACATCCCACTAGGGGAAGCTAGACTGGCAGTAACAACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCACTTGGGTCAGGGAGTCTCCATAGAATGGAGGAAAAAGGAATATAGCACACAAGTAGACCCTAACCTAGCAGACCAACTAATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGTCATATTAGGACATAGAGTTAGCCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGATCTTTACAGTACTTGGCACTAACAGCATTAGTAACACCAAAAAAGACAAAGCCACCTTTGCCTAGTATTACGAAACTGACAGAGGATAGATGGAACAAGCCCCAGAGAACCAAGGGCCACCGAGGGAACCATACAATGAATGGGCACTAGAGCTTTTAG +MK115690.1,vpr,5552,5846,5558,5850,forward,0.4735467015022863,MEQAPENQGPPREPYNEWALELLEELKSEAVRHFPRMWLHGLGQHIYETYGDTWTGVEALIRSLQQLLFIHFRIGCRHSRIGITPQRRTRNGASRS,MEQAPENQGPPREPYNEWALELLEELKSEAVRHFPRMWLHGLGQHIYETYGDTWTGVEALIRSLQQLLFIHFRIGCRHSRIGITPQRRTRNGASRS*S,ATGGAACAAGCCCCAGAGAACCAAGGGCCACCGAGGGAACCATACAATGAATGGGCACTAGAGCTTTTAGAGGAGCTTAAGAGTGAAGCTGTTAGACATTTTCCTAGGATGTGGCTCCATGGCTTAGGGCAACACATCTATGAGACTTATGGGGATACTTGGACAGGAGTGGAAGCCTTAATAAGAAGTCTGCAACAACTGCTGTTCATTCATTTCAGAATTGGGTGTCGACATAGCAGAATAGGAATTACTCCACAGAGGAGAACAAGAAATGGAGCCAGTAGATCCTAATCT +MK115690.1,tat_exon1,5823,6039,5830,6045,forward,0.42503863987635226,MEPVDPNLEPWKHPGSQPKTACTTCYCKQCCYHCQVCFITKGLGISYGRKKRRQRRGSPQDSQIHQASLSKQ,MEPVDPNLEPWKHPGSQPKTACTTCYCKQCCYHCQVCFITKGLGISYGRKKRRQRRGSPQDSQIHQASLSKQ,ATGGAGCCAGTAGATCCTAATCTAGAGCCCTGGAAGCATCCAGGAAGCCAGCCTAAGACTGCTTGTACCACTTGCTATTGTAAACAGTGTTGCTATCATTGCCAAGTTTGTTTCATAACCAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAACGACGAGGATCTCCTCAAGACAGTCAGATTCATCAAGCTTCTCTATCAAAGCAG +MK115690.1,rev_exon1,5962,6040,5969,6045,forward,0.5275498241500586,MAGRSGDNDEDLLKTVRFIKLLYQSS,MAGRSGDNDEDLLKTVRFIKLLYQSS,ATGGCAGGAAGAAGCGGAGACAACGACGAGGATCTCCTCAAGACAGTCAGATTCATCAAGCTTCTCTATCAAAGCAGT +MK115690.1,vpu,6054,6300,6061,6310,forward,0.4711878510505513,MQSLAILAIVALVVAAIIAIVVWTIVFIEYRKILRQRKIDRLIDRIRERAEDSGNESEGDHEELSALMEMGHHAPWDVDDL,MQSLAILAIVALVVAAIIAIVVWTIVFIEYRKILRQRKIDRLIDRIRERAEDSGNESEGDHEELSALMEMGHHAPWDVDDL*,ATGCAATCTTTAGCAATATTAGCAATAGTAGCATTAGTAGTAGCAGCCATAATAGCAATAGTTGTGTGGACCATAGTATTCATAGAATATAGGAAAATATTAAGACAAAGGAAAATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGATAGTGGCAATGAGAGTGAAGGGGATCATGAAGAATTATCAGCACTTATGGAGATGGGGCATCATGCTCCTTGGGATGTTGATGATCTGTAG +MK115690.1,env,6217,8800,6224,8795,forward,0.47271787942614163,MRVKGIMKNYQHLWRWGIMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYDTEAHNVWATHACVPTDPNPQEIGLENVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLHCTKLEINSTKKTNSTNNGTNINATDDSWGEMKNCSFNTTASIRDKVQREFALFYKLDIVPIDNDDINYRLISCNTSVLTQACPKVSFEPIPIHYCAPAGFAILKCRDKNFNGTGQCKNVSTVQCTHGIRPVVSTQLLFNGSLAEEEVVIKSENITDNTKTIIVQLNASVAIVCTRPNNNTRKSIPIGPGRAFYAAGDIIGDIRRAHCILNKTTWDNTIEQVAKKLREQFENKTIVFSESSGGDPEITMISFNCGGEFFYCNSVQLFNSTWHNNGSSTTGSSSSEGNITLPCKIKQIINMWQEVGKAMYAPPIRGPISCESNITGLLLTRDGGNDANGNNTETFRPGGGNMRDNWRSELYRYKVVKIEPLGVAPTRAQRRVVQREKRAVGLGALFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQNNLLRAIEAQQHMLQLTVWGIKQLQARVLAVERYLKDQQLLGLWGCSGKLICNTAVPWNTSWSNKSLDDIWHNMTWMEWEREIDNYTNIIYSLIEASQTQQEKNEQELLELDKWASLWNWFSISNWLWYIKIFIMIVGGLVGLRIVFTILSIVNRVRKGYSPLSFQTHLPAQRGPDRPEGTGDEGGEQDRDRSTHLVDGFLAIIWVDLRNLCLFLYHRLRDLLLIAARIVELLGRRGWEALKYWWNLLQYWRRELKNSAVSLLNATAIAVAEGTDRVIEGLRRAFRAIIHIPRRIRQGLERALQ,MRVKGIMKNYQHLWRWGIMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYDTEAHNVWATHACVPTDPNPQEIGLENVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLHCTKLEINSTKKTNSTNNGTNINATDDSWGEMKNCSFNTTASIRDKVQREFALFYKLDIVPIDNDDINYRLISCNTSVLTQACPKVSFEPIPIHYCAPAGFAILKCRDKNFNGTGQCKNVSTVQCTHGIRPVVSTQLLFNGSLAEEEVVIKSENITDNTKTIIVQLNASVAIVCTRPNNNTRKSIPIGPGRAFYAAGDIIGDIRRAHCILNKTTWDNTIEQVAKKLREQFENKTIVFSESSGGDPEITMISFNCGGEFFYCNSVQLFNSTWHNNGSSTTGSSSSEGNITLPCKIKQIINMWQEVGKAMYAPPIRGPISCESNITGLLLTRDGGNDANGNNTETFRPGGGNMRDNWRSELYRYKVVKIEPLGVAPTRAQRRVVQREKRAVGLGALFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQNNLLRAIEAQQHMLQLTVWGIKQLQARVLAVERYLKDQQLLGLWGCSGKLICNTAVPWNTSWSNKSLDDIWHNMTWMEWEREIDNYTNIIYSLIEASQTQQEKNEQELLELDKWASLWNWFSISNWLWYIKIFIMIVGGLVGLRIVFTILSIVNRVRKGYSPLSFQTHLPAQRGPDRPEGTGDEGGEQDRDRSTHLVDGFLAIIWVDLRNLCLFLYHRLRDLLLIAARIVELLGRRGWEALKYWWNLLQYWRRELKNSAVSLLNATAIAVAEGTDRVIEGLRRAFRAIIHIPRRIRQGLERALQ*,ATGAGAGTGAAGGGGATCATGAAGAATTATCAGCACTTATGGAGATGGGGCATCATGCTCCTTGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTTACAGTCTATTATGGGGTACCTGTGTGGAAAGAAGCAAACACCACTCTATTCTGTGCATCAGATGCTAAAGCATATGATACAGAGGCACATAATGTTTGGGCCACACATGCCTGTGTACCTACAGACCCCAACCCACAAGAAATAGGATTGGAAAATGTGACAGAAAATTTTAACATGTGGAAAAATAACATGGTAGAACAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTACATTGCACTAAGTTGGAGATTAATAGCACTAAGAAGACTAATAGCACTAATAATGGTACTAACATCAATGCCACTGATGATAGTTGGGGGGAAATGAAAAACTGCTCTTTCAATACCACTGCAAGCATAAGAGATAAGGTACAGAGAGAATTTGCGCTTTTTTATAAACTTGATATAGTACCAATAGATAATGATGATATCAACTATAGGTTAATAAGTTGTAACACCTCAGTCCTTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAGAGATAAAAATTTCAATGGAACAGGACAATGTAAAAATGTCAGCACAGTGCAATGTACACATGGAATTAGGCCAGTAGTATCAACTCAACTGCTGTTCAATGGCAGTCTAGCAGAAGAAGAGGTAGTAATTAAATCTGAAAATATCACAGACAATACTAAAACTATAATAGTACAGCTGAATGCATCTGTAGCAATTGTTTGTACAAGACCCAACAACAATACAAGAAAAAGTATACCTATAGGGCCAGGGAGAGCGTTTTATGCAGCAGGAGATATAATAGGAGACATAAGACGAGCACACTGTATCCTTAACAAAACAACATGGGATAACACAATAGAACAGGTAGCTAAAAAATTAAGAGAACAATTTGAGAATAAGACAATAGTCTTTAGTGAATCCTCGGGAGGGGACCCAGAAATTACAATGATTAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAATTCAGTACAACTGTTTAATAGTACTTGGCATAATAATGGGAGTAGTACTACAGGGTCAAGTAGCAGTGAAGGCAATATCACACTCCCATGCAAAATAAAACAAATTATAAACATGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCATCAGAGGACCAATTAGCTGCGAGTCAAATATTACAGGGTTGCTACTAACAAGAGATGGTGGGAATGACGCTAACGGGAACAACACCGAGACCTTCAGACCTGGAGGAGGAAATATGAGGGACAATTGGCGAAGTGAATTATATAGATACAAAGTAGTAAAAATTGAACCATTAGGAGTAGCACCCACCAGGGCACAGAGAAGAGTGGTACAGAGAGAAAAAAGAGCAGTGGGTCTCGGAGCCTTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAATAACGCTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAGCAGCAGAACAATTTGCTGAGGGCTATTGAGGCGCAACAGCATATGTTGCAACTCACAGTCTGGGGCATCAAACAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTAAAGGATCAACAGCTCCTGGGGCTTTGGGGTTGCTCTGGAAAACTCATCTGCAACACTGCTGTGCCTTGGAATACTAGTTGGAGTAACAAATCTCTGGATGATATTTGGCATAACATGACCTGGATGGAGTGGGAAAGAGAAATTGACAATTACACAAACATAATATACAGCTTAATTGAGGCATCGCAAACCCAGCAAGAAAAGAATGAACAAGAATTACTAGAATTAGACAAATGGGCAAGTCTGTGGAATTGGTTTAGCATATCAAACTGGCTGTGGTACATAAAAATATTCATAATGATAGTAGGAGGCTTGGTAGGTTTAAGAATAGTTTTTACTATACTTTCTATAGTGAATAGAGTTAGGAAGGGATACTCACCATTATCGTTTCAGACCCACCTCCCAGCCCAGAGGGGACCCGACAGGCCCGAAGGAACCGGAGACGAAGGTGGAGAGCAAGACAGAGACAGATCCACTCACTTAGTGGATGGATTCTTAGCAATTATCTGGGTCGACCTGCGGAACCTGTGCCTCTTCCTCTACCACCGCTTGAGAGACTTACTCTTGATTGCAGCGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAATACTGGTGGAACCTTCTGCAGTATTGGAGGCGGGAACTAAAGAATAGTGCTGTTAGCTTGCTTAATGCCACAGCCATAGCAGTAGCTGAGGGGACAGATAGAGTTATAGAAGGATTGCGCAGAGCTTTTAGAGCTATTATCCACATACCTAGAAGAATAAGACAGGGCTTGGAAAGAGCTTTGCAATAA +MK115690.1,tat_exon2,8381,8489,8376,8469,forward,0.3161764705882347,RPTSQPRGDPTGPKEPETKVESKTETDPLT,RPTSQPRGDPTGPKEPETKVESKTETDPLT*WMDS*,AGACCCACCTCCCAGCCCAGAGGGGACCCGACAGGCCCGAAGGAACCGGAGACGAAGGTGGAGAGCAAGACAGAGACAGATCCACTCACTTAGTGGATGGATTCTTAG +MK115690.1,rev_exon2,8382,8658,8377,8653,forward,0.4208581400123177,DPPPSPEGTRQARRNRRRRWRARQRQIHSLSGWILSNYLGRPAEPVPLPLPPLERLTLDCSEDCGTSGTQGVGSPQILVEPSAVLEAGTKE,DPPPSPEGTRQARRNRRRRWRARQRQIHSLSGWILSNYLGRPAEPVPLPLPPLERLTLDCSEDCGTSGTQGVGSPQILVEPSAVLEAGTKE*,GACCCACCTCCCAGCCCAGAGGGGACCCGACAGGCCCGAAGGAACCGGAGACGAAGGTGGAGAGCAAGACAGAGACAGATCCACTCACTTAGTGGATGGATTCTTAGCAATTATCTGGGTCGACCTGCGGAACCTGTGCCTCTTCCTCTACCACCGCTTGAGAGACTTACTCTTGATTGCAGCGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAATACTGGTGGAACCTTCTGCAGTATTGGAGGCGGGAACTAAAGAATAG +MK115690.1,nef,8801,9425,8796,9417,forward,0.4955014554114815,MGGKWSKCSIVGWPTVRERIRRAEPAAEGVGAVSRDLEKHGAITSSNANNADCTWLEAQKEEEEVGFPVRPQVPLRPMTYKAALDLSHFLKEKGGLEGIIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRFPLTFGWCFKLVPVEPERVEEENKRENRCLLHPMSQHGMDDPEKEVLQWRFDSRLAFHHVARELHPEYYKN,MGGKWSKCSIVGWPTVRERIRRAEPAAEGVGAVSRDLEKHGAITSSNANNADCTWLEAQKEEEEVGFPVRPQVPLRPMTYKAALDLSHFLKEKGGLEGIIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRFPLTFGWCFKLVPVEPERVEEENKRENRCLLHPMSQHGMDDPEKEVLQWRFDSRLAFHHVARELHPEYYKN*NC*,ATGGGTGGTAAATGGTCAAAATGTAGTATAGTTGGATGGCCTACTGTAAGGGAAAGAATAAGACGAGCAGAGCCAGCAGCAGAAGGGGTGGGAGCAGTATCTCGAGACCTGGAAAAGCATGGAGCAATCACAAGTAGCAATGCTAACAATGCTGATTGTACCTGGCTGGAAGCCCAAAAAGAAGAGGAGGAGGTAGGCTTTCCAGTCAGGCCTCAGGTACCCTTAAGACCAATGACTTACAAGGCAGCCTTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGATAATTTACTCCCAAAAAAGACAAGATATTCTTGATCTGTGGGTCTACAACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGACTAGATTTCCACTGACCTTTGGATGGTGCTTCAAGCTAGTACCAGTTGAGCCAGAGAGGGTAGAAGAGGAGAATAAAAGAGAGAACCGCTGCTTGTTACACCCTATGAGCCAGCATGGGATGGATGACCCAGAGAAAGAAGTGCTACAGTGGAGGTTTGACAGCCGCCTAGCCTTTCACCACGTAGCCAGAGAGCTGCATCCGGAGTACTATAAGAACTAGAACTGCTGA +MK115571.1,gag,579,2079,789,2292,forward,0.2932056543547651,MGARASILSGGKLDSWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSVNVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE,MGARASILSGGKLDSWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSVNVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE*,ATGGGTGCGAGAGCGTCAATATTAAGCGGGGGAAAATTAGATTCATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATTTAGTATGGGCAAGCAGGGAGCTAGAACGATTTGCCGTTAACCCTGGCCTGTTAGAAACATCAGAGGGATGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATTTAATGCAGTAGCAGTCCTCTATTGTGTACATCAAAGGATACAGGTACAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGTAGCAGCAGCTGACACTGACACAGGAAACAGCAGCCAAAATTACCCCATAGTGCAGAACCTCCAGGGGCAAATGGTACATCAGCCCCTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAAAAGGCCTTCAGCCCAGAAGTCATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCTTGGGATTAAATAAAATAGTAAGGATGTATAGCCCTACCAGTATTCTGGATATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAGAACTTTAAGAGCTGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATTCGAATCCAGATTGTAAGACTATTTTAAAAGCATTAGGACCAGCAGCAACACTAGAGGAAATGATGACAGCATGTCAAGGAGTGGGGGGACCAGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAAATTCAGTTAATGTAATGATGCAAAGAGGCAATTTTAGAAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACATCAAATGAAAGACTGTACAGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAA +MK115571.1,pol,1871,4883,2084,5096,forward,0.1922427454342348,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEAFLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEAFLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAAATAGGGGGGCAATTTAAAGAAGCTTTCTTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACCCATAGAAATCTGTGGACACAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGCTTGGTTGTACCTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTCAATAAGAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAATTCCCTTAGATAAAGAATTCAGGAAGTATACTGCATTTACCATACCTAGTACAAATAATGAGACACCAGGGATTAGGTATGAGTACAATGTGCTGCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGCAAAATCCAGATATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAACTAAGACAACATCTGTTAAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAGTGGACAGTACAGCCTATAATACTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTACGCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAGGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTTTAAGAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGCAATGGACAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTACAAAAGATAGCCACAGAAAGCATAGTAATATGGGGAAAAACTCCTAAATTTAGACTACCTATACAAAAAGAAACATGGGAGACATGGTGGGCAGAGTACTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAATTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACTAAATTAGGCAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAGGTTATCTCCCTAACGGACACAACAAATCAAAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATCAGAAGTAAACATAGTAACAGACTCACAATATACATTAGGAATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAATCAGATAATAGAGCAGTTAATAAAAAAGGAAAAAGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGACAAACTAGTCAGTGCTGGAGTCAGGAGAGTACTATTTCTAGATGGAATAGATAAGGCCCAAGAAGACCATGAGAAATATCACAGTAATTGGAGAGCAATGGCTGGTGATTTTAATATACCCCCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCAAAAAGGAGAGGCCATGCATGGACAAGTAGATTGTAGTCCAGGAATATGGCAACTAGATTGTACACATCTAGAAGGGAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTCTCCTGAAACTAGCAGGGAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTAATGTGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCCATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTATAGTGCAGGGGAAAGAATAGTAGATATAATAGCAACAGACCTACAAACTAAAGAATTACAGAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGGAGAAAAGCAAAAATCATTAGGGATTATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG +MK115571.1,vif,4827,5406,5040,5619,forward,0.37360555672490003,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHRVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHRVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH*,ATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATGTTTCAAAGAAAACTAAAGGATGGTTTTATAGACATCACTATGAAAGCACTCATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTGGTAGTAACAACATATTGGGGCCTGAATACAGGAGAAAGAGAATGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGAAAAAGGAAATATAGCACACAAGTTGACCCTAACCTAGCAGACCAACTAATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACATAGAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGCTCTCTACAATACTTGGCACTAAAAGCATTAACAACACCAAAGAGAAGAAAGCCACCTTTACCTAGTGTTAGGAAACTGACAGAGGATAGATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAG +MK115571.1,vpr,5345,5639,5558,5850,forward,0.39444027047332864,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS*T,ATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAGAGCTTTTAGAGGAACTTAAGAATGAAGCGGTTAGACATTTTCCTAGGCCGTGGCTCCATGGCTTAGGACAACATATCTATGAAACTTATGGGGACACTTGGACAGGAGTGGAGGCCATAATAAGAACCCTGCAACAACTGCTGTTTATTCATTTCAGACTTGGGTGTCGACATAGCAGAATAGGCATTGTGCCACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACT +MK115571.1,tat_exon1,5616,5832,5830,6045,forward,0.31992687385740404,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ,ATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCACCCAGGAAGTCAGCCTAAAACTCCTTGTACTAACTGCTATTGCAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAAAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAG +MK115571.1,rev_exon1,5755,5833,5969,6045,forward,0.48200514138817474,MAGRSGDSDEELLKAVRLIKILYQSS,MAGRSGDSDEELLKAVRLIKILYQSS,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGT +MK115571.1,vpu,5847,6093,6061,6310,forward,0.5118110236220472,MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAEDSGNESEGDQEELSALMEMGHHAPGDVDDL,MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAEDSGNESEGDQEELSALMEMGHHAPGDVDDL*,ATGCAACCTCTGCACATAGCAGCAATAGTAGGATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGACCATAGTGTTAATAGAATATAGGAAAATATTAAGACAAAAAAGGATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAG +MK115571.1,env,6010,8551,6224,8795,forward,0.44177044766072027,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEVHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRDKMQKEYALFYKLDVVPIDDDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYGNKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSGTETFRPGGGNMKDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLDQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEVHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRDKMQKEYALFYKLDVVPIDDDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYGNKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSGTETFRPGGGNMKDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLDQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL*,ATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTGACAGTCTATTATGGGGTACCTGTATGGAAAGAAGCAAACACCACTCTATTTTGTGCATCGGATGCTAAAGCATATACCACAGAGGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGGATTGGAAAATGTGACAGAAAATTTTAACATGTGGAAAAATAACATGGTAGAACAGATGCATGAGGATGTAATCAATTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCACTAATCTGAATGTTACTAATACCAATAGCAGTAGTGAGGAGGGAAAGATGGCGGAAGAAATGAGAAACTGCTCTTTCAATATCACCACAAAAATAAGAGATAAGATGCAGAAAGAATATGCACTTTTTTATAAACTTGATGTAGTACCAATAGATGATGATAATACAAGTTATACATTGATAAATTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCTATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAGGATAAGAAGTTCAATGGATCAGGACCATGTAAAAATGTCAGCACAGTACAATGTACACATGGAATTAAGCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTTTAGCAGAAGAAGAGGTAGTAATTAGATCTGAAAATTTCACGAACAATGCTAAAACCATAATAGTACATCTGAAGGAACCTATACAAATTAATTGTACAAGACCCAACAACAATACAATGAAAAGTATCCCTCTAGGACCAGGAAGAGCATTCTATGCAACAGGAGCCATAATAGGAGATATAAGACAAGCACATTGTAACCTTAGTAGAAAAGCATGGAATAATACTTTAAAACAGGTAGTTGAAAAATTAAAAGAACAATATGGGAATAAAACAATAATCTTTAATCACTCCTCAGGAGGGGACCCAGAAATTATAATGCATACTTTTAATTGTGGAGGGGAATTTTTCTATTGTAATACAACACAGCTGTTTAATAGTACTTGGAATAGTACTTGGACTGGGAATGCTACCGAATTAGATGGAAACATCACACTCCCATGCAGAATAAAACAGATTATAAACAGGTGGCAAGAAGTAGGAAAAGCAATGTATGCCCCTCCCATTAGAGGAAAAATTAGATGTTCATCAAATATTACAGGGTTACTATTAGTAAGAGATGGTGGTAACACGAGCGGGACTGAGACCTTCAGACCTGGAGGAGGAAATATGAAGGACAATTGGAGGAGTGAATTATATAAATATAAAGTAGTAAAAATTGAGCCATTAGGAGTAGCACCCACCAGGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAAGCCAGGCTGTTATTGTCTGGTATAGTGCAACAGCAAAACAATTTGCTGAGAGCTATTGAGGCGCAACAACATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTACAGGATCAACAGCGCCTGGGAATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCCTGGAATGCTAGTTGGAGTAATAAATCTCTGGATCAGATTTGGGATAACATGACCTGGATGGAGTGGGAAAGAGAAATTAACAATTACACAGACACAATATACACCTTAATTGAAAAGGCGCAGAACCAGCAGGAAAAGAATGAACAAGAATTATTGGAATTGGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAAATGGCTGTGGTACATAAAATTATTCATAATGATAGTAGGAGGATTGATAGGTTTAAGAATAGTTTTTGCTGTACTTGCTATAGTAAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGTCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAGCTTATTTAATGTCACAGCCATCGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAAGAGCTTGTAGAGCTCTTCTCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCATTGTTATAA +MK115571.1,tat_exon2,8132,8228,8376,8469,forward,0.3161764705882347,RPTSQPRGDPTGPKESKKKVEKETETDQFD,RPTSQPRGDPTGPKESKKKVEKETETDQFD**,AGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGA +MK115571.1,rev_exon2,8133,8418,8377,8653,forward,0.40871934604904625,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVSLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVSLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE*CY*,GACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGTCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAG +MK115571.1,nef,8552,9173,8796,9417,forward,0.49848743916874616,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDNEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPTSLHGVEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDNEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPTSLHGVEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC*H*,ATGGGGGGCAAGTGGTCAAAAAGTAGTGGGGGTGGATGGCCTGCTGTAAGGGAAAGAATGAGACGAACTGAGCCAGCAGCAGAAGGGGTGGGAGCAGTATCTCGAGACCTGGAAAGACATGGAGCAGTCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGCGCCTGGCTGGAAGCACAAGAAGAGGACAATGAAGTGGGTTTTCCAGTCAGACCTCAGGTGCCTTTAAGACCAATGACTTTCAAAGGAGCTCTCGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCCCAAAAAAGACAAGATATCCTTGACCTGTGGGTCTACAACACACAAGGATACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGACCAGATATCCACTGACCTTTGGGTGGTGTTTCAAGCTAGTACCAGTGGAGCCAGAAGAGGCCAATCAAGGAGAGAACAACTGCTTGTTGCACCCTACGAGCCTGCATGGGGTGGAGGACCCGGAAAAAGAAGTATTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCACATGGCCCGAGAGAAGCATCCGGAGTACTACAAAGACTGCTGACATTGA +MK115514.1,gag,584,2090,789,2292,forward,0.2932056543547651,MGARASILSGGKLDEWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSVNVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE,MGARASILSGGKLDEWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSVNVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE*R*,ATGGGTGCGAGAGCGTCAATATTAAGCGGGGGAAAATTAGATGAATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATTTAGTATGGGCAAGCAGGGAGCTAGAACGATTTGCCGTTAACCCTGGCCTGTTAGAAACATCAGAGGGATGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATTTAATGCAGTAGCAGTCCTCTATTGTGTACATCAAAGGATACAGGTACAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGTAGCAGCAGCTGACACTGACACAGGAAACAGCAGCCAAAATTACCCCATAGTGCAGAACCTCCAGGGGCAAATGGTACATCAGCCCCTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAAAAGGCCTTCAGCCCAGAAGTCATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCTTGGGATTAAATAAAATAGTAAGGATGTATAGCCCTACCAGTATTCTGGATATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAGAACTTTAAGAGCTGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATTCGAATCCAGATTGTAAGACTATTTTAAAAGCATTAGGACCAGCAGCAACACTAGAGGAAATGATGACAGCATGTCAAGGAGTGGGGGGACCAGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAAATTCAGTTAATGTAATGATGCAAAGAGGCAATTTTAGAAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACATCAAATGAAAGACTGTACAGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAG +MK115514.1,pol,1876,4888,2084,5096,forward,0.1890827530448842,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAGGGGGGCAATTTAAAGAAGCTTTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGCTTTATCAAAGTAAGACAGTATGATCAGATACCCATAGAAATCTGTGGACACAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGCTTGGTTGTACCTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTCAATAAGAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAATTCCCTTAGATAAAGAATTCAGGAAGTATACTGCATTTACCATACCTAGTACAAATAATGAGACACCAGGGATTAGGTATGAGTACAATGTGCTGCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGCAAAATCCAGATATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAACTGAGACAACATCTGTTAAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAGTGGACAGTACAGCCTATAATACTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTACGCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAGGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTTTAAGAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGCAATGGACAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTACAAAAGATAGCCACAGAAAGCATAGTAATATGGGGAAAAACTCCTAAATTTAGACTACCTATACAAAAAGAAACATGGGAGACATGGTGGGCAGAATACTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAATTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACTAAATTAGGCAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAGGTTATCTCCCTAACGGACACAACAAATCAAAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATCAGAAGTAAACATAGTAACAGACTCACAATATACATTAGGAATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAATCAGATAATAGAGCAGTTAATAAAAAAGGAAAAAGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGACAAACTAGTCAGTGCTGGAGTCAGGAGAGTACTATTTCTAGATGGAATAGATAAGGCCCAAGAAGACCATGAGAAATATCACAGTAATTGGAGAGCAATGGCTGGTGATTTTAATATACCCCCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCAAAAAGGAGAGGCCATGCATGGACAAGTAGATTGTAGTCCAGGAATATGGCAACTAGATTGTACACATCTAGAAGGGAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTCTCCTGAAACTAGCAGGGAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTAATGTGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCCATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTATAGTGCAGGGGAAAGAATAGTAGATATAATAGCAACAGACCTACAAACTAAAGAATTACAGAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGGAGAAAAGCAAAAATCATTAGGGATTATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG +MK115514.1,vif,4832,5411,5040,5619,forward,0.37360555672490003,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGDIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGDIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH*,ATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATGTTTCAAAGAAAACTAAAGGATGGTTTTATAGACATCACTATGAAAGCACTCATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTGGTAGTAACAACATATTGGGGCCTGAATACAGGAGAAAGAGAATGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGAAAAAGGAAATATAGCACACAAGTTGACCCTAACCTAGCAGACCAACTAATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGAGATATAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGCTCTCTACAATACTTGGCACTAAAAGCATTAACAACACCAAAGAGAAGAAAGCCACCTTTACCTAGTGTTAGGAAACTGACAGAGGATAGATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAG +MK115514.1,vpr,5350,5644,5558,5850,forward,0.39444027047332864,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS*T,ATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAGAGCTTTTAGAGGAACTTAAGAATGAAGCGGTTAGACATTTTCCTAGGCCGTGGCTCCATGGCTTAGGACAACATATCTATGAAACTTATGGGGACACTTGGACAGGAGTGGAGGCCATAATAAGAACCCTGCAACAACTGCTGTTTATTCATTTCAGACTTGGGTGTCGACATAGCAGAATAGGCATTGTGCCACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACT +MK115514.1,tat_exon1,5621,5840,5830,6045,forward,0.31992687385740404,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ*,ATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCACCCAGGAAGTCAGCCTAAAACTCCTTGTACTAACTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAAAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGTAA +MK115514.1,rev_exon1,5760,5838,5969,6045,forward,0.48200514138817474,MAGRSGDSDEELLKAVRLIKILYQSS,MAGRSGDSDEELLKAVRLIKILYQSS,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGT +MK115514.1,vpu,5852,6098,6061,6310,forward,0.5118110236220472,MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAEDSGNESEGDQEELSALMEMGHHAPGDVDDL,MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAEDSGNESEGDQEELSALMEMGHHAPGDVDDL*,ATGCAACCTCTGCACATAGCAGCAATAGTAGGATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGACCATAGTGTTAATAGAATATAGGAAAATATTAAGACAAAAAAGGATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAG +MK115514.1,env,6015,8556,6224,8795,forward,0.4435264018789581,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEVHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNITNTNSSSKEGKMAEEMRNCSFNITTEIRNKMQKEYALFYKLDVVPIDDDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYGNKTIVFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSGTETFRPGGGDMKDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEVHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNITNTNSSSKEGKMAEEMRNCSFNITTEIRNKMQKEYALFYKLDVVPIDDDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYGNKTIVFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSGTETFRPGGGDMKDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL*,ATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTGACAGTCTATTATGGGGTACCTGTATGGAAAGAAGCAAACACCACTCTATTTTGTGCATCGGATGCTAAAGCATATACCACAGAGGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGGATTGGAAAATGTGACAGAAAATTTTAACATGTGGAAAAATAACATGGTAGAACAGATGCATGAGGATGTAATCAATTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCACTAATCTGAATATTACTAATACCAATAGCAGTAGTAAGGAGGGAAAGATGGCGGAAGAAATGAGAAACTGCTCTTTCAATATCACCACAGAAATAAGAAATAAGATGCAGAAGGAATATGCACTTTTTTATAAACTTGATGTAGTACCAATAGATGATGATAATACAAGTTATACATTGATAAATTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCTATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAGGATAAGAAGTTCAATGGATCAGGACCATGTAAAAGTGTCAGCACAGTACAATGTACACATGGAATTAAGCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTTTAGCAGAAGAAGAGGTAGTAATTAGATCTGAAAATTTCACGAACAATGCTAAAACCATAATAGTACATCTGAAGGAACCTATACAAATTAATTGTACAAGACCCAACAACAATACAATGAAAAGTATCCCTCTAGGACCAGGAAGAGCATTCTATGCAACAGGAGCCATAATAGGAGATATAAGACAAGCACATTGTAACCTTAGTAGAAAAGCATGGAATAATACTTTAAAACAGGTAGTTGAAAAATTAAAAGAACAATATGGGAATAAAACAATAGTCTTTAATCACTCCTCAGGAGGGGACCCAGAAATTATAATGCATACTTTTAATTGTGGAGGGGAATTTTTCTATTGTAATACAACACAGCTGTTTAATAGTACTTGGAATAGTACTTGGACTGGGAATGCTACCGAATTAGATGGAAACATCACACTCCCATGCAGAATAAAACAGATTATAAACAGGTGGCAAGAAGTAGGAAAAGCAATGTATGCCCCTCCCATTAGAGGAAAAATTAGATGTTCATCAAATATTACAGGGTTACTATTAGTAAGAGATGGTGGTAACACGAGCGGGACTGAGACCTTCAGACCTGGAGGAGGAGATATGAAGGACAATTGGAGGAGTGAATTATATAAATATAAAGTAGTAAAAATTGAGCCATTAGGAGTAGCACCCACCAGGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAAGCCAGGCTGTTATTGTCTGGTATAGTGCAACAGCAAAACAATTTGCTAAGAGCTATTGAGGCGCAACAACATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTACAGGATCAACAGCGCCTGGGAATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCCTGGAATGCTAGTTGGAGTAATAAATCTCTGAATCAGATTTGGGATAACATGACCTGGATGGAGTGGGAAAGAGAAATTAACAATTACACAGACACAATATACACCTTAATTGAAAAGGCGCAGAACCAGCAGGAAAAGAATGAACAAGAATTATTGGAATTGGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAAATGGCTGTGGTACATAAAATTATTCATAATGATAGTAGGAGGATTGATAGGTTTAAGAATAGTTTTTGCTGTACTTGCTATAGTAAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGTCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAGCTTATTCAATGTCACAGCCATCGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAAGAGCTTGTAGAGCTCTTCTCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCATTGTTATAA +MK115514.1,tat_exon2,8137,8233,8376,8469,forward,0.3161764705882347,RPTSQPRGDPTGPKESKKKVEKETETDQFD,RPTSQPRGDPTGPKESKKKVEKETETDQFD**,AGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGA +MK115514.1,rev_exon2,8138,8423,8377,8653,forward,0.40871934604904625,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVSLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVSLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE*CY*,GACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGTCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAG +MK115514.1,nef,8557,9178,8796,9417,forward,0.49848743916874616,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDGEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPTSLHGVEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDGEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPTSLHGVEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC*H*,ATGGGGGGCAAGTGGTCAAAAAGTAGTGGGGGTGGATGGCCTGCTGTAAGGGAAAGAATGAGACGAACTGAGCCAGCAGCAGAAGGGGTGGGAGCAGTATCTCGAGACCTGGAAAGACATGGAGCAGTCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGCGCCTGGCTGGAAGCACAAGAAGAGGACGGTGAAGTGGGTTTTCCAGTCAGACCTCAGGTGCCTTTAAGACCAATGACTTTCAAAGGAGCTCTCGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCCCAAAAAAGACAAGATATCCTTGACCTGTGGGTCTACAACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGACCAGATATCCACTGACCTTTGGGTGGTGTTTCAAGCTAGTACCAGTGGAGCCAGAAGAGGCCAATCAAGGAGAGAACAACTGCTTGTTACACCCTACGAGCCTGCATGGGGTGGAGGACCCGGAAAAAGAAGTATTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCACATGGCCCGAGAGAAGCATCCGGAGTACTACAAAGACTGCTGACATTGA +MK115488.1,gag,707,2213,789,2292,forward,0.2932056543547651,MGARASILSGGKLDEWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSVNVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE,MGARASILSGGKLDEWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSVNVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE*R*,ATGGGTGCGAGAGCGTCAATATTAAGCGGGGGAAAATTAGATGAATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATTTAGTATGGGCAAGCAGGGAGCTAGAACGATTTGCCGTTAACCCTGGCCTGTTAGAAACATCAGAGGGATGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATTTAATGCAGTAGCAGTCCTCTATTGTGTACATCAAAGGATACAGGTACAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGTAGCAGCAGCTGACACTGACACAGGAAACAGCAGCCAAAATTACCCCATAGTGCAGAACCTCCAGGGGCAAATGGTACATCAGCCCCTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAAAAGGCCTTCAGCCCAGAAGTCATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCTTGGGATTAAATAAAATAGTAAGGATGTATAGCCCTACCAGTATTCTGGATATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAGAACTTTAAGAGCTGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATTCGAATCCAGATTGTAAGACTATTTTAAAAGCATTAGGACCAGCAGCAACACTAGAGGAAATGATGACAGCATGTCAAGGAGTGGGGGGACCAGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAAATTCAGTTAATGTAATGATGCAAAGAGGCAATTTTAGAAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACATCAAATGAAAGACTGTACAGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAG +MK115488.1,pol,1999,5011,2084,5096,forward,0.1890827530448842,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAGGGGGGCAATTTAAAGAAGCTTTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGCTTTATCAAAGTAAGACAGTATGATCAGATACCCATAGAAATCTGTGGACACAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGCTTGGTTGTACCTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTCAATAAGAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAATTCCCTTAGATAAAGAATTCAGGAAGTATACTGCATTTACCATACCTAGTACAAATAATGAGACACCAGGGATTAGGTATGAGTACAATGTGCTGCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGCAAAATCCAGATATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAACTGAGACAACATCTGTTAAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAGTGGACAGTACAGCCTATAATACTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTACGCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAGGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTTTAAGAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGCAATGGACAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTACAAAAGATAGCCACAGAAAGCATAGTAATATGGGGAAAAACTCCTAAATTTAGACTACCTATACAAAAAGAAACATGGGAGACATGGTGGGCAGAATACTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAATTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACTAAATTAGGCAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAGGTTATCTCCCTAACGGACACAACAAATCAAAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATCAGAAGTAAACATAGTAACAGACTCACAATATACATTAGGAATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAATCAGATAATAGAGCAGTTAATAAAAAAGGAAAAAGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGACAAACTAGTCAGTGCTGGAGTCAGGAGAGTACTATTTCTAGATGGAATAGATAAGGCCCAAGAAGACCATGAGAAATATCACAGTAATTGGAGAGCAATGGCTGGTGATTTTAATATACCCCCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCAAAAAGGAGAGGCCATGCATGGACAAGTAGATTGTAGTCCAGGAATATGGCAACTAGATTGTACACATCTAGAAGGGAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTCTCCTGAAACTAGCAGGGAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTAATGTGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCCATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTATAGTGCAGGGGAAAGAATAGTAGATATAATAGCAACAGACCTACAAACTAAAGAATTACAGAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGGAGAAAAGCAAAAATCATTAGGGATTATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG +MK115488.1,vif,4955,5534,5040,5619,forward,0.37360555672490003,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGDIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGDIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH*,ATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATGTTTCAAAGAAAACTAAAGGATGGTTTTATAGACATCACTATGAAAGCACTCATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTGGTAGTAACAACATATTGGGGCCTGAATACAGGAGAAAGAGAATGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGAAAAAGGAAATATAGCACACAAGTTGACCCTAACCTAGCAGACCAACTAATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGAGATATAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGCTCTCTACAATACTTGGCACTAAAAGCATTAACAACACCAAAGAGAAGAAAGCCACCTTTACCTAGTGTTAGGAAACTGACAGAGGATAGATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAG +MK115488.1,vpr,5473,5767,5558,5850,forward,0.39444027047332864,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS*T,ATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAGAGCTTTTAGAGGAACTTAAGAATGAAGCGGTTAGACATTTTCCTAGGCCGTGGCTCCATGGCTTAGGACAACATATCTATGAAACTTATGGGGACACTTGGACAGGAGTGGAGGCCATAATAAGAACCCTGCAACAACTGCTGTTTATTCATTTCAGACTTGGGTGTCGACATAGCAGAATAGGCATTGTGCCACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACT +MK115488.1,tat_exon1,5744,5963,5830,6045,forward,0.31992687385740404,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ*,ATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCACCCAGGAAGTCAGCCTAAAACTCCTTGTACTAACTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAAAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGTAA +MK115488.1,rev_exon1,5883,5961,5969,6045,forward,0.48200514138817474,MAGRSGDSDEELLKAVRLIKILYQSS,MAGRSGDSDEELLKAVRLIKILYQSS,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGT +MK115488.1,vpu,5975,6221,6061,6310,forward,0.5118110236220472,MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAEDSGNESEGDQEELSALMEMGHHAPGDVDDL,MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAEDSGNESEGDQEELSALMEMGHHAPGDVDDL*,ATGCAACCTCTGCACATAGCAGCAATAGTAGGATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGACCATAGTGTTAATAGAATATAGGAAAATATTAAGACAAAAAAGGATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAG +MK115488.1,env,6138,8679,6224,8795,forward,0.4435264018789581,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEVHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNITNTNSSSKEGKMAEEMRNCSFNITTEIRNKMQKEYALFYKLDVVPIDDDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYGNKTIVFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSGTETFRPGGGDMKDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEVHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNITNTNSSSKEGKMAEEMRNCSFNITTEIRNKMQKEYALFYKLDVVPIDDDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYGNKTIVFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSGTETFRPGGGDMKDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL*,ATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTGACAGTCTATTATGGGGTACCTGTATGGAAAGAAGCAAACACCACTCTATTTTGTGCATCGGATGCTAAAGCATATACCACAGAGGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGGATTGGAAAATGTGACAGAAAATTTTAACATGTGGAAAAATAACATGGTAGAACAGATGCATGAGGATGTAATCAATTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCACTAATCTGAATATTACTAATACCAATAGCAGTAGTAAGGAGGGAAAGATGGCGGAAGAAATGAGAAACTGCTCTTTCAATATCACCACAGAAATAAGAAATAAGATGCAGAAGGAATATGCACTTTTTTATAAACTTGATGTAGTACCAATAGATGATGATAATACAAGTTATACATTGATAAATTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCTATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAGGATAAGAAGTTCAATGGATCAGGACCATGTAAAAGTGTCAGCACAGTACAATGTACACATGGAATTAAGCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTTTAGCAGAAGAAGAGGTAGTAATTAGATCTGAAAATTTCACGAACAATGCTAAAACCATAATAGTACATCTGAAGGAACCTATACAAATTAATTGTACAAGACCCAACAACAATACAATGAAAAGTATCCCTCTAGGACCAGGAAGAGCATTCTATGCAACAGGAGCCATAATAGGAGATATAAGACAAGCACATTGTAACCTTAGTAGAAAAGCATGGAATAATACTTTAAAACAGGTAGTTGAAAAATTAAAAGAACAATATGGGAATAAAACAATAGTCTTTAATCACTCCTCAGGAGGGGACCCAGAAATTATAATGCATACTTTTAATTGTGGAGGGGAATTTTTCTATTGTAATACAACACAGCTGTTTAATAGTACTTGGAATAGTACTTGGACTGGGAATGCTACCGAATTAGATGGAAACATCACACTCCCATGCAGAATAAAACAGATTATAAACAGGTGGCAAGAAGTAGGAAAAGCAATGTATGCCCCTCCCATTAGAGGAAAAATTAGATGTTCATCAAATATTACAGGGTTACTATTAGTAAGAGATGGTGGTAACACGAGCGGGACTGAGACCTTCAGACCTGGAGGAGGAGATATGAAGGACAATTGGAGGAGTGAATTATATAAATATAAAGTAGTAAAAATTGAGCCATTAGGAGTAGCACCCACCAGGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAAGCCAGGCTGTTATTGTCTGGTATAGTGCAACAGCAAAACAATTTGCTAAGAGCTATTGAGGCGCAACAACATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTACAGGATCAACAGCGCCTGGGAATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCCTGGAATGCTAGTTGGAGTAATAAATCTCTGAATCAGATTTGGGATAACATGACCTGGATGGAGTGGGAAAGAGAAATTAACAATTACACAGACACAATATACACCTTAATTGAAAAGGCGCAGAACCAGCAGGAAAAGAATGAACAAGAATTATTGGAATTGGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAAATGGCTGTGGTACATAAAATTATTCATAATGATAGTAGGAGGATTGATAGGTTTAAGAATAGTTTTTGCTGTACTTGCTATAGTAAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGTCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAGCTTATTCAATGTCACAGCCATCGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAAGAGCTTGTAGAGCTCTTCTCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCATTGTTATAA +MK115488.1,tat_exon2,8260,8356,8376,8469,forward,0.3161764705882347,RPTSQPRGDPTGPKESKKKVEKETETDQFD,RPTSQPRGDPTGPKESKKKVEKETETDQFD**,AGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGA +MK115488.1,rev_exon2,8261,8546,8377,8653,forward,0.40871934604904625,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVSLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVSLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE*CY*,GACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGTCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAG +MK115488.1,nef,8680,9301,8796,9417,forward,0.49848743916874616,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDGEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPTSLHGVEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDGEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPTSLHGVEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC*H*,ATGGGGGGCAAGTGGTCAAAAAGTAGTGGGGGTGGATGGCCTGCTGTAAGGGAAAGAATGAGACGAACTGAGCCAGCAGCAGAAGGGGTGGGAGCAGTATCTCGAGACCTGGAAAGACATGGAGCAGTCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGCGCCTGGCTGGAAGCACAAGAAGAGGACGGTGAAGTGGGTTTTCCAGTCAGACCTCAGGTGCCTTTAAGACCAATGACTTTCAAAGGAGCTCTCGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCCCAAAAAAGACAAGATATCCTTGACCTGTGGGTCTACAACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGACCAGATATCCACTGACCTTTGGGTGGTGTTTCAAGCTAGTACCAGTGGAGCCAGAAGAGGCCAATCAAGGAGAGAACAACTGCTTGTTACACCCTACGAGCCTGCATGGGGTGGAGGACCCGGAAAAAGAAGTATTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCACATGGCCCGAGAGAAGCATCCGGAGTACTACAAAGACTGCTGACATTGA +MK115030.1,gag,176,1685,789,2292,forward,0.26696618585954146,MGARASVLSGGELDRWEKIYLRPGGKKKYRLKHIVWASRELERFAVNPGLLESSEGCRQILGQLQPALQTGSEELRSLYNTVAVLYCVHQRINVKDTKEALDKIEEEQNKSKKKAQQAAADTGNSSNSQVSQNYPIVQNLQGQMVHQPISPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINDEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHTPPIPVGEIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFYKTLRAEQASQDVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTKSASIMVQGGNFRNQRKNVKCFNCGKEGHIARNCRAPRKKGCWKCGREGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPAESFRFGEEATAPPQKQETKDQELYPLASLRSLFGNDP,MGARASVLSGGELDRWEKIYLRPGGKKKYRLKHIVWASRELERFAVNPGLLESSEGCRQILGQLQPALQTGSEELRSLYNTVAVLYCVHQRINVKDTKEALDKIEEEQNKSKKKAQQAAADTGNSSNSQVSQNYPIVQNLQGQMVHQPISPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINDEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHTPPIPVGEIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFYKTLRAEQASQDVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTKSASIMVQGGNFRNQRKNVKCFNCGKEGHIARNCRAPRKKGCWKCGREGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPAESFRFGEEATAPPQKQETKDQELYPLASLRSLFGNDP*YQ*,ATGGGTGCGAGAGCGTCAGTATTAAGCGGCGGAGAATTAGATAGATGGGAAAAAATTTACCTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTCAACCCTGGCCTGTTAGAGTCATCAGAAGGCTGCAGGCAAATTCTGGGACAGCTACAACCAGCCCTTCAGACAGGATCAGAAGAACTTAGATCATTATATAATACAGTAGCAGTCCTCTATTGTGTACATCAAAGGATAAATGTAAAAGACACCAAGGAAGCTCTAGACAAAATAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAACAAGCAGCAGCTGACACAGGAAACAGCAGCAACAGCCAGGTCAGCCAAAATTACCCTATAGTGCAGAACCTACAGGGGCAAATGGTACATCAACCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAATAGAAGAAAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCACTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAGATGTTAAAAGAAACCATCAATGATGAGGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGCCCTATTGCACCAGGCCAGATGAGGGAACCAAGGGGAAGTGACATAGCAGGAACCACTAGTACCCTTCAGGAACAAATAGGATGGATGACACATACTCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCCTGGGGTTAAATAAAATAGTAAGAATGTATAGCCCTGTCAGCATTTTGGACATAAGACAAGGACCAAAGGAACCCTTTAGGGATTATGTAGACCGGTTCTATAAAACTCTAAGGGCTGAGCAAGCGTCACAGGATGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAATCCAGATTGTAAGACCATTTTAAAAGCATTAGGACCAGCAGCTACATTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGGGGACCCGGCCACAAGGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAACAAAATCAGCCTCCATAATGGTGCAGGGAGGCAATTTTAGGAACCAAAGAAAGAATGTTAAGTGTTTCAATTGTGGCAAAGAAGGACACATAGCCAGAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAGGGAAGGACACCAAATGAAAGATTGTACTGAGAGACAGGCTAATTTTTTAGGGAAGATTTGGCCTTCCCACAAGGGGAGGCCAGGGAATTTTCTCCAGAGCAGACCAGAGCCAACAGCCCCGCCAGCAGAGAGCTTCAGGTTTGGGGAAGAGGCAACAGCTCCCCCTCAGAAGCAGGAGACGAAGGACCAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCATAATATCAATAA +MK115030.1,pol,1477,4567,2084,5096,forward,0.2613261112298957,FFREDLAFPQGEAREFSPEQTRANSPASRELQVWGRGNSSPSEAGDEGPGTVSFSFPQITLWQRPIISIKIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYDQVPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPRVKQWPLTEEKIKALIEICAEMEKEGKITKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKRKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNEAPGVRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKENPDIVIYQYMDDLYVGSDLEIEQHRTKIEELRQHLLGWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPDKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTEVVPLTEEAELELAENREILKEPVHGAYYDPSKDLIAEVQKQGGDQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKIALEAIVIWGKTPKFKLPIQKETWEMWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIIGAETFYVDGAANRETKLGKAGYVTDRGRQKVVSLMDTTNQRTELHAIHLALQDSGSTVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHKGIGGNEQVDKLVSNGIRKILFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEPMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIAAETGQETAYFILKLAGRWPVKIIHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDSREPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKILRDYGKQMAGDDCVASRQDED,FFREDLAFPQGEAREFSPEQTRANSPASRELQVWGRGNSSPSEAGDEGPGTVSFSFPQITLWQRPIISIKIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYDQVPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPRVKQWPLTEEKIKALIEICAEMEKEGKITKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKRKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNEAPGVRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKENPDIVIYQYMDDLYVGSDLEIEQHRTKIEELRQHLLGWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPDKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTEVVPLTEEAELELAENREILKEPVHGAYYDPSKDLIAEVQKQGGDQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKIALEAIVIWGKTPKFKLPIQKETWEMWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIIGAETFYVDGAANRETKLGKAGYVTDRGRQKVVSLMDTTNQRTELHAIHLALQDSGSTVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHKGIGGNEQVDKLVSNGIRKILFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEPMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIAAETGQETAYFILKLAGRWPVKIIHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDSREPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKILRDYGKQMAGDDCVASRQDED*NMEQFSKTPYAYFKESSEMGLQTSL*,TTTTTTAGGGAAGATTTGGCCTTCCCACAAGGGGAGGCCAGGGAATTTTCTCCAGAGCAGACCAGAGCCAACAGCCCCGCCAGCAGAGAGCTTCAGGTTTGGGGAAGAGGCAACAGCTCCCCCTCAGAAGCAGGAGACGAAGGACCAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCATAATATCAATAAAAATAGGAGGGCAACTAAAAGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAATTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGGTACCCATAGAAATTTGTGGACATAAAGCTATAGGTACAGTATTAATAGGACCTACACCAGTCAACATAATTGGAAGAAATCTGTTGACCCAGCTTGGTTGCACTTTAAATTTTCCCATCAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAGAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAGGCATTAATAGAAATTTGTGCAGAAATGGAAAAGGAAGGGAAAATTACAAAAATTGGGCCTGAGAATCCATATAATACTCCAGTGTTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCCGAGAACTTAATAAGAGAACACAAGACTTCTGGGAAGTTCAACTAGGAATACCACATCCCGCAGGGTTAAAAAGGAAAAAATCAGTAACAGTACTAGATGTGGGTGATGCATATTTTTCAGTTCCTTTAGACAAAGACTTCAGAAAGTATACTGCATTTACCATACCCAGTATAAACAATGAGGCACCAGGAGTTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGGAAAATCCAGACATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGAGCAGCACAGAACAAAAATAGAGGAACTGAGACAACATCTGTTGGGGTGGGGACTCACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTTCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATACAGCTGCCAGACAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAGTTGAATTGGGCAAGCCAGATCTATCCAGGGATTAAAGTAAAGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAAGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAGATTCTAAAAGAACCAGTACATGGAGCATATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGGGGAGACCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGGAAATATGCAAGAACGAGGGGTGCCCACACTAATGATGTAAAACAGTTAACAGAGGCAGTGCAAAAAATAGCCCTAGAAGCCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTACCTATACAAAAGGAAACATGGGAAATGTGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAATTTGTCAATACCCCTCCCTTAGTAAAATTATGGTACCAGTTAGAGAAAGAACCCATAATAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAGACTAAATTAGGAAAAGCAGGGTATGTTACGGACAGAGGAAGACAAAAGGTTGTCTCCCTAATGGACACAACAAATCAGAGGACTGAGTTACACGCAATTCATCTAGCTTTGCAGGATTCAGGATCAACAGTAAACATAGTGACAGACTCACAATATGCCTTAGGGATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAGTCAAATAATAGAGCAGCTAATAAAAAAGGAAAAGATTTACCTGGCATGGGTCCCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTAATGGAATCAGAAAAATACTATTTCTGGATGGAATAGATAAGGCCCAAGAAGAACATGAAAAATATCACAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAGTGTCAGTTAAAAGGAGAACCTATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAACTGGATTGTACACATTTAGAAGGAAAAATTATCCTGGTAGCAGTTCATGTAGCCAGTGGATACATAGAAGCAGAAGTTATTGCAGCAGAAACAGGGCAGGAAACAGCATACTTTATCTTAAAATTGGCAGGAAGATGGCCAGTAAAAATAATACATACAGACAATGGCAGCAATTTCACCAGCACTACGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGTATTCCCTACAATCCTCAAAGTCAAGGAGTAGTAGAATCTATGAATAATGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAATAGACATAATAGCAACAGACATACAAACTAAAGAACTACAAAAACAAATTTCAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGAACCACTTTGGAAAGGACCAGCAAAGCTCCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATCCTTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATATTTCAAAGAAAGCTCAGAGATGGGTTTACAGACATCACTATGA +MK115030.1,vif,4433,5012,5040,5619,forward,0.38012913976254936,MENRWQVMIVWQVDRMRIRTWNSLVKHHMHISKKAQRWVYRHHYESHNPKTSSEVHIPLGEARLVIKTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPGLADQLIHLYYFDCFSESAIRNAILGHRVSPRCEYQAGHNKVGSLQYLALTALITPKRRKPPLPSVTKLTEDRWNKSQRTKGHKGSHTMNGH,MENRWQVMIVWQVDRMRIRTWNSLVKHHMHISKKAQRWVYRHHYESHNPKTSSEVHIPLGEARLVIKTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPGLADQLIHLYYFDCFSESAIRNAILGHRVSPRCEYQAGHNKVGSLQYLALTALITPKRRKPPLPSVTKLTEDRWNKSQRTKGHKGSHTMNGH*,ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATATTTCAAAGAAAGCTCAGAGATGGGTTTACAGACATCACTATGAAAGCCATAATCCAAAAACAAGTTCAGAAGTACACATCCCATTAGGGGAAGCAAGATTGGTAATAAAAACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCATTTGGGCCAGGGAGTATCCATAGAATGGAGGAAAAGGAGATATAGCACACAAGTAGACCCTGGCCTGGCAGACCAACTAATTCACCTGTATTATTTTGATTGTTTTTCAGAATCTGCTATAAGGAATGCCATATTAGGACATAGAGTTAGTCCTAGGTGTGAATATCAGGCAGGACATAACAAGGTAGGATCCCTACAATACTTGGCATTAACAGCATTAATAACACCAAAAAGGAGAAAGCCACCTTTGCCCAGTGTTACAAAATTAACAGAGGACAGATGGAACAAGTCCCAGAGGACCAAGGGCCACAAAGGGAGCCATACAATGAATGGACATTAG +MK115030.1,vpr,4951,5245,5558,5850,forward,0.4557731262660367,MEQVPEDQGPQREPYNEWTLELLEELKSEAVRHFPRPWLHSLGQYIYETYGDTWAGVEDIIRTLQQLLFIHFRIGCQHSRIGIIRQRRARNGASRS,MEQVPEDQGPQREPYNEWTLELLEELKSEAVRHFPRPWLHSLGQYIYETYGDTWAGVEDIIRTLQQLLFIHFRIGCQHSRIGIIRQRRARNGASRS*L,ATGGAACAAGTCCCAGAGGACCAAGGGCCACAAAGGGAGCCATACAATGAATGGACATTAGAGCTCTTAGAAGAGCTTAAGAGTGAAGCTGTTAGGCATTTTCCTAGACCATGGCTTCATAGCTTAGGACAATATATCTATGAAACTTATGGAGATACTTGGGCAGGGGTGGAAGACATAATAAGAACCCTGCAACAACTGTTGTTCATTCATTTCAGAATTGGGTGTCAACATAGCAGGATAGGAATTATTCGACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGCTT +MK115030.1,tat_exon1,5222,5441,5830,6045,forward,0.49064354176175273,MEPVDPSLEPWKHPGSQPMTACNNCYCKRCCFHCQVCFTRKGLGISYGRKKRRQRRRASHSSQNHQAALPEQ,MEPVDPSLEPWKHPGSQPMTACNNCYCKRCCFHCQVCFTRKGLGISYGRKKRRQRRRASHSSQNHQAALPEQ*,ATGGAGCCAGTAGATCCTAGCTTAGAGCCCTGGAAACATCCAGGAAGTCAACCTATGACTGCTTGTAACAATTGCTATTGTAAACGGTGTTGCTTTCATTGCCAAGTTTGCTTCACAAGAAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTTCTCACAGCAGTCAGAATCATCAAGCGGCTCTACCAGAGCAGTAA +MK115030.1,rev_exon1,5361,5439,5969,6045,forward,0.5132850241545894,MAGRSGDSDEELLTAVRIIKRLYQSS,MAGRSGDSDEELLTAVRIIKRLYQSS,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTTCTCACAGCAGTCAGAATCATCAAGCGGCTCTACCAGAGCAGT +MK115030.1,vpu,5453,5699,6061,6310,forward,0.5572971090212471,MHILEIAAIVGLVVAAIIAIVVWSIVLIEYRKILRQRKIDRLIDRIRERAEDSGNESDGDQEELSAIVEMGHLVPWDGDDM,MHILEIAAIVGLVVAAIIAIVVWSIVLIEYRKILRQRKIDRLIDRIRERAEDSGNESDGDQEELSAIVEMGHLVPWDGDDM*,ATGCATATCTTAGAAATAGCAGCAATAGTAGGATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGTCTATAGTATTAATAGAATATAGGAAAATTTTAAGACAAAGGAAAATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAAAGTGACGGGGACCAGGAGGAATTATCAGCAATTGTGGAGATGGGGCATCTTGTTCCTTGGGATGGTGATGATATGTAG +MK115030.1,env,5616,8217,6224,8795,forward,0.48198180611408303,MKVTGTRRNYQQLWRWGILFLGMVMICSARNLWVTVYYGVPVWKEATTTLFCASDAKAYETEKHNVWATHACVPTDPSPQEVALENVTETFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDNLNLNRPNNNTCSNNTNYNITEKGEIKNCSFNVTTGIRDRVTKEHALFYKLDVVPIDEGSGNTTGKYRMINCNTSVITQACPKVSFEPIPIHFCAPAGFAILKCKDKKFNGTGECRNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVIRSANLSNNAKTIIVQLNKSVKINCTRPNNNTRRSIHIGPGRAFYGTDIIGDIRQAHCNISGKDWNDTLKQIVIKLKEKFENKTIVFTQSSGGDPEIVMHSFNCGGEFFYCNTTQLFNSTWNNNTWNGTDNWNGTESNSTITLPCRIKQIINLWQEVGRAMYAPPIQGQIRCSSNITGLLLVRDGGSNNSSNDTETFRPGGGDMRDNWRSELYKYKVVKIEPLGIAPTHAKRRVVQREKRAMGLGAFFLGFLGAAGSTMGAASVTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLALERYLKDQQLLGIWGCSGKLICTTNVPWNISWNPRWNRSLDEIWTNMTWKQWEKEIDNYTDIIYNLIEQSQNQQEQNEQDLLALDKWASLWNWFDITQWLWYIKIFIMIVGGLIGLRIVFTILSIVNRVRQGYSPLSLQTLLPTQRGPDRPEGTEEGGGERDRGTSTRLVHGFLALIWDDLRSLFLFSYHRLRDLLLIAARIVELLGRRGWEALKYWWNLLQYWSQEIKNSAVSLLNTTAIAVAEGTDRIIEVLQRGFRAILHIPTRIRQGLERALL,MKVTGTRRNYQQLWRWGILFLGMVMICSARNLWVTVYYGVPVWKEATTTLFCASDAKAYETEKHNVWATHACVPTDPSPQEVALENVTETFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDNLNLNRPNNNTCSNNTNYNITEKGEIKNCSFNVTTGIRDRVTKEHALFYKLDVVPIDEGSGNTTGKYRMINCNTSVITQACPKVSFEPIPIHFCAPAGFAILKCKDKKFNGTGECRNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVIRSANLSNNAKTIIVQLNKSVKINCTRPNNNTRRSIHIGPGRAFYGTDIIGDIRQAHCNISGKDWNDTLKQIVIKLKEKFENKTIVFTQSSGGDPEIVMHSFNCGGEFFYCNTTQLFNSTWNNNTWNGTDNWNGTESNSTITLPCRIKQIINLWQEVGRAMYAPPIQGQIRCSSNITGLLLVRDGGSNNSSNDTETFRPGGGDMRDNWRSELYKYKVVKIEPLGIAPTHAKRRVVQREKRAMGLGAFFLGFLGAAGSTMGAASVTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLALERYLKDQQLLGIWGCSGKLICTTNVPWNISWNPRWNRSLDEIWTNMTWKQWEKEIDNYTDIIYNLIEQSQNQQEQNEQDLLALDKWASLWNWFDITQWLWYIKIFIMIVGGLIGLRIVFTILSIVNRVRQGYSPLSLQTLLPTQRGPDRPEGTEEGGGERDRGTSTRLVHGFLALIWDDLRSLFLFSYHRLRDLLLIAARIVELLGRRGWEALKYWWNLLQYWSQEIKNSAVSLLNTTAIAVAEGTDRIIEVLQRGFRAILHIPTRIRQGLERALL*,ATGAAAGTGACGGGGACCAGGAGGAATTATCAGCAATTGTGGAGATGGGGCATCTTGTTCCTTGGGATGGTGATGATATGTAGTGCCAGAAACTTGTGGGTCACAGTCTATTATGGGGTACCTGTATGGAAAGAAGCAACTACCACTCTATTTTGTGCATCAGATGCTAAAGCATATGAGACAGAGAAGCATAATGTTTGGGCAACCCATGCCTGTGTACCCACAGACCCCAGCCCACAGGAAGTAGCATTGGAAAATGTGACAGAAACATTTAACATGTGGAAAAATGACATGGTAGAGCAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGCCTAAAGCCATGTGTGAAACTAACCCCACTCTGTGTTACTTTAAATTGCACTGATAATTTAAATCTAAATCGCCCTAACAATAATACTTGTAGTAATAATACTAATTATAATATAACGGAAAAAGGAGAAATAAAAAACTGCTCTTTCAATGTCACCACAGGAATAAGAGATAGGGTGACAAAAGAACATGCACTTTTCTATAAACTTGATGTAGTACCAATAGATGAAGGTAGTGGAAATACTACGGGCAAATATAGGATGATAAATTGTAACACCTCAGTCATTACACAAGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTTTTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAAGATAAGAAATTCAATGGAACAGGAGAATGTAGAAATGTCAGCACAGTACAATGTACACATGGAATTAGGCCAGTAGTATCAACTCAACTGCTGCTGAACGGCAGTCTAGCAGAAGAAGAGATAGTAATTAGATCTGCCAATCTCTCGAACAATGCTAAAACCATAATAGTACAGCTGAATAAATCTGTAAAAATTAATTGTACAAGACCCAACAATAATACAAGAAGAAGTATACACATAGGACCAGGGAGGGCATTTTATGGAACAGACATAATAGGGGATATAAGACAAGCGCATTGTAACATTAGTGGGAAAGATTGGAATGACACTTTAAAACAGATAGTTATAAAATTAAAAGAAAAATTTGAGAATAAAACAATAGTCTTTACTCAATCCTCAGGAGGGGACCCAGAGATAGTGATGCATAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAATACAACACAGCTGTTTAATAGTACTTGGAATAATAATACTTGGAATGGTACTGATAATTGGAATGGTACTGAATCAAATAGCACTATCACACTCCCATGCAGAATAAAACAAATTATAAACTTGTGGCAGGAAGTAGGAAGAGCAATGTATGCCCCTCCCATCCAAGGGCAAATTAGATGTTCATCAAATATTACAGGGCTGCTGCTAGTAAGAGATGGTGGAAGCAACAATAGTAGTAATGATACAGAGACCTTCAGGCCTGGAGGAGGAGATATGAGGGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTCAAAATTGAACCATTAGGAATAGCACCCACCCATGCAAAGAGAAGAGTGGTGCAAAGGGAAAAAAGAGCAATGGGACTTGGAGCTTTCTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAGCAGCAAAACAATTTGCTGAGAGCTATTGAGGCGCAACAGCATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTTTGGAAAGATACCTAAAGGATCAACAGCTCCTGGGGATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTAATGTGCCCTGGAATATTAGTTGGAACCCTAGATGGAATAGATCTCTAGATGAGATTTGGACTAACATGACCTGGAAGCAGTGGGAAAAGGAAATTGACAATTACACAGACATAATATATAACTTAATTGAACAATCACAGAACCAACAAGAACAGAATGAACAAGACTTATTGGCATTAGATAAGTGGGCAAGTTTGTGGAATTGGTTTGACATTACACAGTGGCTATGGTATATAAAAATATTCATAATGATAGTAGGAGGCTTGATAGGTTTAAGAATAGTTTTTACTATACTGTCTATAGTAAATAGAGTTAGGCAGGGATACTCACCATTGTCATTGCAGACCCTCCTCCCAACCCAGAGGGGACCCGACAGGCCCGAAGGAACAGAAGAAGGAGGTGGAGAGAGAGACAGAGGCACATCCACGAGATTAGTGCATGGATTCTTAGCACTCATCTGGGACGACCTGCGGAGCCTGTTCCTCTTCAGTTACCACCGCTTGAGAGACTTACTCTTGATTGCGGCGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCACTGAAGTATTGGTGGAATCTCCTGCAGTATTGGAGTCAGGAAATAAAGAATAGTGCAGTTAGCTTGCTCAACACCACAGCAATAGCAGTAGCTGAGGGGACAGATAGGATTATAGAAGTATTACAAAGAGGCTTTAGAGCTATTCTCCACATACCTACACGAATAAGACAGGGCTTAGAAAGGGCTTTGCTATAA +MK115030.1,tat_exon2,7798,7891,8376,8469,forward,0.439759036144578,RPSSQPRGDPTGPKEQKKEVERETEAHPRD,RPSSQPRGDPTGPKEQKKEVERETEAHPRD*,AGACCCTCCTCCCAACCCAGAGGGGACCCGACAGGCCCGAAGGAACAGAAGAAGGAGGTGGAGAGAGAGACAGAGGCACATCCACGAGATTAG +MK115030.1,rev_exon2,7799,8075,8377,8653,forward,0.40871934604904625,DPPPNPEGTRQARRNRRRRWRERQRHIHEISAWILSTHLGRPAEPVPLQLPPLERLTLDCGEDCGTSGTQGVGSTEVLVESPAVLESGNKE,DPPPNPEGTRQARRNRRRRWRERQRHIHEISAWILSTHLGRPAEPVPLQLPPLERLTLDCGEDCGTSGTQGVGSTEVLVESPAVLESGNKE*,GACCCTCCTCCCAACCCAGAGGGGACCCGACAGGCCCGAAGGAACAGAAGAAGGAGGTGGAGAGAGAGACAGAGGCACATCCACGAGATTAGTGCATGGATTCTTAGCACTCATCTGGGACGACCTGCGGAGCCTGTTCCTCTTCAGTTACCACCGCTTGAGAGACTTACTCTTGATTGCGGCGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCACTGAAGTATTGGTGGAATCTCCTGCAGTATTGGAGTCAGGAAATAAAGAATAG +MK115030.1,nef,8218,8866,8796,9417,forward,0.5621267799724368,MGNKLSRGLRAGWPAIRERMRRARPVREPEPAAAGVGAASRDLERHGALTSSNTAATNTDVACLEAQQEEEEVGFPVRPQVPLRPMTYKGALDISHFLKEKGGLDGLIYSKRRQDILDLWLYNTQGYFPDWQNYTPGPGVRFPLCFGWCFKLVPVDPDKVEEASVGENNCLLSPENLHGMEDEHREVLQWRFDSRLAFHHVARELHPEYYKDC,MGNKLSRGLRAGWPAIRERMRRARPVREPEPAAAGVGAASRDLERHGALTSSNTAATNTDVACLEAQQEEEEVGFPVRPQVPLRPMTYKGALDISHFLKEKGGLDGLIYSKRRQDILDLWLYNTQGYFPDWQNYTPGPGVRFPLCFGWCFKLVPVDPDKVEEASVGENNCLLSPENLHGMEDEHREVLQWRFDSRLAFHHVARELHPEYYKDC*H*,ATGGGTAACAAGTTGTCAAGAGGGCTCAGGGCTGGATGGCCTGCCATAAGGGAGAGAATGAGACGAGCTAGGCCAGTAAGAGAGCCAGAGCCAGCAGCAGCTGGGGTGGGAGCAGCATCTCGAGACCTGGAAAGACATGGAGCACTTACAAGTAGCAATACAGCAGCTACCAATACTGATGTTGCCTGCCTGGAAGCACAACAGGAGGAGGAAGAGGTGGGTTTTCCAGTCAGACCTCAGGTACCTTTAAGGCCAATGACTTACAAGGGAGCTCTAGATATTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGATGGGCTAATTTACTCCAAAAGAAGACAAGACATCCTTGATCTGTGGCTCTACAACACACAAGGCTACTTCCCTGACTGGCAGAACTACACACCAGGGCCAGGAGTCAGATTTCCACTGTGTTTTGGATGGTGCTTCAAGCTAGTACCAGTTGATCCAGATAAGGTAGAAGAGGCCAGTGTAGGAGAGAACAACTGCTTGTTAAGCCCCGAAAACCTGCATGGAATGGAGGACGAACACAGAGAAGTATTGCAGTGGAGGTTTGACAGCCGCCTAGCATTTCATCACGTGGCCCGAGAGCTGCATCCGGAGTATTACAAGGACTGCTGACACTGA +MK115498.1,gag,663,2169,789,2292,forward,0.2932056543547651,MGARASILSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWTTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSANVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE,MGARASILSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWTTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSANVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE*R*,ATGGGTGCGAGAGCGTCAATATTAAGCGGGGGAAAATTAGATGCATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATTTAGTATGGGCAAGCAGGGAGCTAGAACGATTTGCCGTTAACCCTGGCCTGTTAGAAACATCAGAGGGATGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATTTAATGCAGTAGCAGTCCTCTATTGTGTACATCAAAGGATACAGGTACAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGTAGCAGCAGCTGACACTGACACAGGAAACAGCAGCCAAAATTACCCCATAGTGCAGAACCTCCAGGGGCAAATGGTACATCAGCCCCTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAAAAGGCCTTCAGCCCAGAAGTCATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGACGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCTTGGGATTAAATAAAATAGTAAGGATGTATAGCCCTACCAGTATTCTGGATATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAGAACTTTAAGAGCTGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATTCGAATCCAGATTGTAAGACTATTTTAAAAGCATTAGGACCAGCAGCAACACTAGAGGAAATGATGACAGCATGTCAAGGAGTGGGGGGACCAGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAAATTCAGCTAATGTAATGATGCAGAGAGGCAATTTTAGAAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACATCAAATGAAAGACTGTACAGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAG +MK115498.1,pol,1955,4967,2084,5096,forward,0.1922427454342348,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSTGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSTGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAGGGGGGCAATTTAAAGAAGCTTTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACCCATAGAAATCTGTGGACACAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGCTTGGTTGTACCTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTCAATAAGAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAATTCCCTTAGATAAAGAATTCAGGAAGTATACTGCATTTACCATACCTAGTACAAATAATGAGACACCAGGGATTAGGTATGAGTACAATGTGCTGCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGCAAAATCCAGATATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAACTGAGACAACATCTGTTAAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAGTGGACAGTACAGCCTATAATACTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTACGCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAGGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTTTAAGAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGCAATGGACAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTACAAAAGATAGCCACAGAAAGCATAGTAATATGGGGAAAAACTCCTAAATTTAGACTACCTATACAAAAAGAAACATGGGAGACATGGTGGGCAGAGTACTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAATTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACTAAATTAGGCAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAGGTTATCTCCCTAACGGACACAACAAATCAAAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATCAGAAGTAAACATAGTAACAGACTCACAATATACATTAGGAATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAATCAGATAATAGAGCAGTTAATAAAAAAGGAAAAAGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGACAAACTAGTCAGTACTGGAGTCAGGAGAGTACTATTTCTAGATGGAATAGATAAGGCCCAAGAAGACCATGAGAAATATCACAGTAATTGGAGAGCAATGGCTGGTGATTTTAATATACCCCCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCAAAAAGGAGAGGCCATGCATGGACAAGTAGATTGTAGTCCAGGAATATGGCAACTAGATTGTACACATCTAGAAGGGAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTCTCCTGAAACTAGCAGGGAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTAATGTGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCCATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTATAGTGCAGGGGAAAGAATAGTAGATATAATAGCAACAGACCTACAAACTAAAGAATTACAGAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGGAGAAAAGCAAAAATCATTAGGGATTATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG +MK115498.1,vif,4911,5490,5040,5619,forward,0.36355859709153127,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH*,ATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATGTTTCAAAGAAAACTAAAGGATGGTTTTATAGACATCACTATGAAAGCACTCATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTGGTAGTAACAACATATTGGGGCCTGAATACAGGAGAAAGAGAATGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGAAAAAGGAAATATAGCACACAAGTTGACCCTAACCTAGCAGACCAACTAATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACATATAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGCTCTCTACAATACTTGGCACTAAAAGCATTAACAACACCAAAGAGAAGAAAGCCACCTTTACCTAGTGTTAGGAAACTGACAGAGGATAGATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAG +MK115498.1,vpr,5429,5723,5558,5850,forward,0.39444027047332864,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS*T,ATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAGAGCTTTTAGAGGAACTTAAGAATGAAGCGGTTAGACATTTTCCTAGGCCGTGGCTCCATGGCTTAGGACAACATATCTATGAAACTTATGGGGACACTTGGACAGGAGTGGAGGCCATAATAAGAACCCTGCAACAACTGCTGTTTATTCATTTCAGACTTGGGTGTCGACATAGCAGAATAGGCATTGTGCCACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACT +MK115498.1,tat_exon1,5700,5916,5830,6045,forward,0.31992687385740404,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ,ATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCACCCAGGAAGTCAGCCTAAAACTCCTTGTACTAACTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAAAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAG +MK115498.1,rev_exon1,5839,5917,5969,6045,forward,0.48200514138817474,MAGRSGDSDEELLKAVRLIKILYQSS,MAGRSGDSDEELLKAVRLIKILYQSS,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGT +MK115498.1,vpu,5931,6177,6061,6310,forward,0.5254806794847863,MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAKDSGNESEGDQEELSALMEMGHHAPGDVDDL,MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAKDSGNESEGDQEELSALMEMGHHAPGDVDDL*,ATGCAACCTCTGCACATAGCAGCAATAGTAGGATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGACCATAGTGTTAATAGAATATAGGAAAATATTAAGACAAAAAAGGATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAAAAGACAGTGGCAATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAG +MK115498.1,env,6094,8635,6224,8795,forward,0.4421225244922844,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEAHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRNKMQKEYALFYKLDVVPIDNDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYENKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSETETFRPGGGDMKDNWRSELYKYKVEKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEAHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRNKMQKEYALFYKLDVVPIDNDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYENKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSETETFRPGGGDMKDNWRSELYKYKVEKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL*,ATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTGACAGTCTATTATGGGGTACCTGTATGGAAAGAAGCAAACACCACTCTATTTTGTGCATCGGATGCTAAAGCATATACCACAGAGGCACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGGATTGGAAAATGTGACAGAAAATTTTAACATGTGGAAAAATAACATGGTAGAACAGATGCATGAGGATGTAATCAATTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCACTAATCTGAATGTTACTAATACCAATAGCAGTAGTGAGGAGGGAAAGATGGCGGAAGAAATGAGAAACTGCTCTTTCAATATCACCACAAAAATAAGAAATAAGATGCAGAAGGAATATGCACTTTTTTATAAACTTGATGTAGTACCAATAGATAATGATAATACAAGTTATACATTGATAAATTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCTATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAGGATAAGAAGTTCAATGGATCAGGACCATGTAAAAATGTCAGCACAGTACAATGTACACATGGAATTAAGCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTTTAGCAGAAGAAGAGGTAGTAATTAGATCTGAAAATTTCACGAACAATGCTAAAACCATAATAGTACATCTGAAGGAACCTATACAAATTAATTGTACAAGACCCAACAACAATACAATGAAAAGTATCCCTCTAGGACCAGGAAGAGCATTCTATGCAACAGGAGCCATAATAGGAGATATAAGACAAGCACATTGTAACCTTAGTAGAAAAGCATGGAATAATACTTTAAAACAGGTAGTTGAAAAATTAAAAGAACAATATGAGAATAAAACAATAATCTTTAATCACTCCTCAGGAGGGGACCCAGAAATTATAATGCATACTTTTAATTGTGGAGGGGAATTTTTCTATTGTAATACAACACAGCTGTTTAATAGTACTTGGAATAGTACTTGGACTGGGAATGCTACCGAATTAGATGGAAACATCACACTCCCATGCAGAATAAAACAGATTATAAACAGGTGGCAAGAAGTAGGAAAAGCAATGTATGCCCCTCCCATTAGAGGAAAAATTAGATGTTCATCAAATATTACAGGGTTACTATTAGTAAGAGATGGTGGTAACACGAGCGAGACTGAGACCTTCAGACCTGGAGGAGGAGATATGAAGGACAATTGGAGGAGTGAATTATATAAATATAAAGTAGAAAAAATTGAGCCATTAGGAGTAGCACCCACCAGGGCAAAGAGAAGAGTGGTGCAAAGAGAAAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAAGCCAGGCTGTTATTGTCTGGTATAGTGCAACAGCAAAACAATTTGCTGAGAGCTATTGAGGCGCAACAACATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTACAGGATCAACAGCGCCTGGGAATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCCTGGAATGCTAGTTGGAGTAATAAATCTCTGAATCAGATTTGGGATAACATGACCTGGATGGAGTGGGAAAGAGAAATTAACAATTACACAGACACAATATACACCTTAATTGAAAAGGCGCAGAACCAGCAGGAAAAAAATGAACAAGAATTATTGGAATTGGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAAATGGCTGTGGTACATAAAATTATTCATAATGATAGTAGGAGGATTGATAGGTTTAAGAATAGTTTTTGCTGTACTTGCTATAGTAAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGCCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAGCTTATTCAATGTCACAGCCATCGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAAGAGCTTGTAGAGCTCTTCTCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCATTGTTATAA +MK115498.1,tat_exon2,8216,8312,8376,8469,forward,0.3161764705882347,RPTSQPRGDPTGPKESKKKVEKETETDQFD,RPTSQPRGDPTGPKESKKKVEKETETDQFD**,AGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGA +MK115498.1,rev_exon2,8217,8502,8377,8653,forward,0.38952607660679506,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVPLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVPLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE*CY*,GACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGCCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAG +MK115498.1,nef,8636,9257,8796,9417,forward,0.49848743916874616,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPMSLHGMEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPMSLHGMEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC*H*,ATGGGGGGCAAGTGGTCAAAAAGTAGTGGGGGTGGATGGCCTGCTGTAAGGGAAAGAATGAGACGAACTGAGCCAGCAGCAGAAGGGGTGGGAGCAGTATCTCGAGACCTGGAAAGACATGGAGCAGTCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGCGCCTGGCTGGAAGCACAAGAAGAGGACAGTGAAGTGGGTTTTCCAGTCAGACCTCAGGTGCCTTTAAGACCAATGACTTTCAAAGGAGCTCTCGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCCCAAAAAAGACAAGATATCCTTGACCTGTGGGTCTACAACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGACCAGATATCCACTGACCTTTGGGTGGTGTTTCAAGCTAGTACCAGTGGAGCCAGAAGAGGCCAATCAAGGAGAGAACAACTGCTTGTTACACCCTATGAGCCTGCATGGGATGGAGGACCCGGAAAAAGAAGTATTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCACATGGCCCGAGAGAAGCATCCGGAGTACTACAAAGACTGCTGACATTGA +MK115211.1,gag,250,1753,789,2292,forward,0.23814204964364727,MGARASVLSGGELDKWEKIRLRPGGKKRYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPALQTGSEELKSLFNTVAVLYCVHQKIEIKDTKEALDKIEEEQNKSKKKTQQAAADTGHNSQVSQNYPIVQNMQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSNAVMMQKGNFRSQRKMVKCFNCGKEGHIARNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFPQSRTEPTAPPEESFSFGEKTTTPSQKQEPIDQELYPLSSLKSLFGNDP,MGARASVLSGGELDKWEKIRLRPGGKKRYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPALQTGSEELKSLFNTVAVLYCVHQKIEIKDTKEALDKIEEEQNKSKKKTQQAAADTGHNSQVSQNYPIVQNMQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSNAVMMQKGNFRSQRKMVKCFNCGKEGHIARNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFPQSRTEPTAPPEESFSFGEKTTTPSQKQEPIDQELYPLSSLKSLFGNDP*SQ*,ATGGGTGCGAGAGCGTCGGTATTAAGCGGGGGAGAATTAGACAAATGGGAGAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAGATATAAGTTAAAACATATAGTATGGGCAAGCAGGGAACTGGAACGATTCGCAGTTAATCCTGGCCTGTTAGAAACATCAGAAGGCTGTAGACAAATACTGGGACAGCTACAACCAGCCCTTCAGACAGGATCAGAGGAACTTAAATCATTATTTAATACAGTAGCAGTCCTCTATTGTGTGCATCAAAAGATAGAGATAAAAGACACCAAGGAAGCTTTAGACAAGATAGAGGAAGAACAAAACAAAAGTAAGAAAAAGACACAGCAAGCAGCAGCTGACACAGGACATAACAGCCAGGTCAGCCAAAATTACCCTATAGTGCAGAACATGCAGGGGCAAATGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTGAAAGTAGTAGAAGAGAAGGCATTTAGCCCAGAAGTAATACCCATGTTTTCAGCCTTATCAGAAGGAGCCACCCCACAAGATTTGAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACTATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCGATTGCACCAGGCCAGATGAGAGAGCCGAGGGGAAGTGACATAGCAGGAACCACCAGTACCCTTCAGGAGCAAATAGGATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTACAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGAATGTATAGTCCTACCAGCATTCTGGACATAAGACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGATCGGTTCTATAAAACTCTAAGAGCCGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAGAATGCAAACCCAGATTGTAAAACCATTTTAAAAGCATTGGGTCCAGCAGCTACACTAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCCGGCCATAAGGCAAGAGTTTTGGCGGAAGCAATGAGCCAAGTAACAAACTCAAATGCCGTGATGATGCAGAAAGGCAATTTTAGGAGCCAAAGAAAGATGGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGGAAAAGGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGATTGTACTGAGAGACAGGCAAATTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGAAGGCCAGGGAACTTTCCTCAAAGCAGGACAGAACCAACAGCCCCACCAGAGGAGAGCTTCAGTTTTGGGGAAAAGACAACAACTCCTTCTCAGAAGCAGGAGCCGATAGACCAGGAACTATACCCTCTGTCTTCCCTCAAATCACTCTTTGGCAACGACCCTTAGTCACAGTAA +MK115211.1,pol,1545,4557,2084,5096,forward,0.24591953047316462,FFRENLAFPQGKARELSSKQDRTNSPTRGELQFWGKDNNSFSEAGADRPGTIPSVFPQITLWQRPLVTVRIGGQLKEALLDTGADDTVLEDMNLPGRWKPKMIGGIGGFIKVKQYDQISVEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPRVKQWPLTEEKIKALTEICKEMEKEGKISRIGPENPYNTPIFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKVEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGAKALTEVVPLTEEAELELAENREILKEPVHGVYYDPTKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWESWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIIGAETFYVDGAANRETKSGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIQKEKVYLAWVPAHKGIGGNEQVDKLVSSGIRKVLFLDGIDKAQEDHEKYHSNWRAMASDFNLPPVIAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPNFTSNAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKQLKQIIGQVREQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKVKIIRDYGKQMAGDGCVASRQDED,FFRENLAFPQGKARELSSKQDRTNSPTRGELQFWGKDNNSFSEAGADRPGTIPSVFPQITLWQRPLVTVRIGGQLKEALLDTGADDTVLEDMNLPGRWKPKMIGGIGGFIKVKQYDQISVEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPRVKQWPLTEEKIKALTEICKEMEKEGKISRIGPENPYNTPIFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKVEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGAKALTEVVPLTEEAELELAENREILKEPVHGVYYDPTKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWESWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIIGAETFYVDGAANRETKSGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIQKEKVYLAWVPAHKGIGGNEQVDKLVSSGIRKVLFLDGIDKAQEDHEKYHSNWRAMASDFNLPPVIAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPNFTSNAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKQLKQIIGQVREQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKVKIIRDYGKQMAGDGCVASRQDED*,TTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGAAGGCCAGGGAACTTTCCTCAAAGCAGGACAGAACCAACAGCCCCACCAGAGGAGAGCTTCAGTTTTGGGGAAAAGACAACAACTCCTTCTCAGAAGCAGGAGCCGATAGACCAGGAACTATACCCTCTGTCTTCCCTCAAATCACTCTTTGGCAACGACCCTTAGTCACAGTAAGGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTGTTAGAAGACATGAATTTACCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAAACAGTATGATCAGATATCAGTAGAAATTTGTGGACATAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAATATAATTGGAAGAAATCTGTTGACTCAGATTGGTTGTACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAGAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAACAGAAATTTGTAAGGAAATGGAAAAGGAAGGGAAAATTTCAAGAATTGGGCCTGAAAATCCATACAATACTCCAATATTTGCAATAAAGAAAAAAGACAGTACTAAATGGAGAAAGTTAGTAGATTTTAGAGAACTTAATAAGAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACACCCCGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCCTAGATAAAGACTTCAGGAAATATACTGCATTTACCATACCTAGTACAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTACTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCTGACATAGTTATATATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAGTAGAGGAACTGAGACAACATCTGTTGAAGTGGGGGTTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTTCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATACAACTGCCAGAGAAAGACAGCTGGACTGTCAATGATATACAGAAATTAGTGGGAAAGTTGAATTGGGCAAGTCAGATTTATCCAGGGATTAAAGTAAGGCAGTTATGTAAACTACTTAGAGGAGCCAAGGCGCTAACAGAAGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATCCTAAAAGAACCAGTACATGGAGTGTATTATGACCCAACAAAAGACTTAATAGCAGAAATACAGAAGCAGGGGCAAGGTCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAACTTGAAAACAGGAAAATATGCAAGAACAAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAGCCACAGAAAGCATAGTAATATGGGGAAAGACCCCTAAATTTAGACTACCCATTCAAAAAGAAACATGGGAATCATGGTGGACAGAATATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAAAAAGAACCCATAATAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACAAAATCAGGAAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAAGTTATTTCCCTAACTGACACAACAAATCAGAAGACTGAGTTACAAGCAATTCATCTAGCTTTGCAGGATTCAGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAGGCACAACCAGATAAAAGCGAATCAGAGTTAGTCAATCAAATAATAGAGCAATTAATACAAAAGGAAAAGGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGGGGAAATGAACAAGTAGATAAATTAGTCAGTTCTGGAATCAGAAAGGTACTATTTTTGGATGGAATAGATAAAGCCCAAGAAGATCATGAAAAATATCACAGTAATTGGAGAGCAATGGCTAGTGACTTTAACCTACCACCTGTAATAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGAGAAGCTATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAATTAGATTGTACACATTTAGAAGGAAAAATTATCCTGGTAGCAGTTCATGTAGCTAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGACAGGAAACAGCATACTTTCTCTTAAAATTAGCAGGAAGATGGCCAGTAACAACAATACATACAGACAATGGCCCCAACTTCACCAGTAATGCAGTTAAGGCCGCCTGTTGGTGGGCAGGGGTCAAACAAGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTTGTAGAATCTATGAATAAACAATTAAAACAAATTATAGGGCAGGTAAGAGAGCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAATAGACATAATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAGGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTGGTAATACAAGATAATAGTGACATAAAAGTAGTACCAAGAAGAAAAGTAAAAATTATTAGGGATTATGGAAAACAGATGGCAGGTGATGGTTGTGTGGCAAGTAGACAGGATGAGGATTAA +MK115211.1,vif,4501,5083,5040,5619,forward,0.3902888752304854,MENRWQVMVVWQVDRMRINMWKSLVKYHIHNSGKARGWCYRHHYESRHPRISSEVHIPLGGEARLVVTTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPELADQLIHLYYFNCFSESAIRQAILGHRVSPRCEYQAGHNKVGSLQYLALIALIPPKRRKPPLPSVRKLTEDRWNEPQRTKGHRESHTMNGH,MENRWQVMVVWQVDRMRINMWKSLVKYHIHNSGKARGWCYRHHYESRHPRISSEVHIPLGGEARLVVTTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPELADQLIHLYYFNCFSESAIRQAILGHRVSPRCEYQAGHNKVGSLQYLALIALIPPKRRKPPLPSVRKLTEDRWNEPQRTKGHRESHTMNGH*,ATGGAAAACAGATGGCAGGTGATGGTTGTGTGGCAAGTAGACAGGATGAGGATTAACATGTGGAAAAGCTTAGTAAAATACCATATACATAATTCAGGGAAGGCTAGGGGATGGTGTTATAGACATCACTATGAAAGCAGACATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGAGGAGAGGCTAGACTAGTAGTGACAACATATTGGGGCCTGCATACAGGAGAAAGAGACTGGCATTTGGGTCAAGGAGTCTCCATAGAATGGAGGAAAAGGAGATATAGCACACAAGTAGACCCTGAACTAGCAGACCAACTAATTCATCTGTATTATTTTAATTGTTTTTCAGAATCTGCTATAAGACAAGCCATATTAGGACATAGAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAATAAGGTAGGATCTCTGCAGTACTTGGCACTAATAGCATTAATACCACCAAAAAGGAGAAAGCCACCTTTGCCTAGTGTGAGGAAACTGACAGAGGATAGATGGAACGAGCCCCAGAGGACCAAGGGCCACAGAGAGAGCCATACAATGAATGGACACTAG +MK115211.1,vpr,5022,5316,5558,5850,forward,0.43675751222921066,MERAPEDQGPQREPYNEWTLELLEELKREAVRHFPRAWLHGLGQHIYETYGDTWAGVEALIRTLQQLVFIHFRIGCQHSRIGILTHRRARNGASRS,MERAPEDQGPQREPYNEWTLELLEELKREAVRHFPRAWLHGLGQHIYETYGDTWAGVEALIRTLQQLVFIHFRIGCQHSRIGILTHRRARNGASRS*T,ATGGAACGAGCCCCAGAGGACCAAGGGCCACAGAGAGAGCCATACAATGAATGGACACTAGAACTTTTAGAAGAGCTTAAAAGAGAAGCTGTTAGGCACTTTCCTAGGGCATGGCTTCACGGCCTAGGACAACATATCTATGAAACTTATGGAGATACTTGGGCAGGAGTGGAAGCTCTAATAAGAACTCTGCAACAACTGGTGTTTATTCATTTCAGAATTGGATGTCAGCACAGCAGGATAGGCATTCTTACCCATAGAAGGGCAAGAAATGGAGCCAGTAGATCCTAGACT +MK115211.1,tat_exon1,5293,5512,5830,6045,forward,0.4787482484820177,MEPVDPRLEPWKHPGSQPKTACTSCYCKRCCYHCPRCFLTKGLGISYGRKKRRQRRRTPQDNQNHQVSLSKQ,MEPVDPRLEPWKHPGSQPKTACTSCYCKRCCYHCPRCFLTKGLGISYGRKKRRQRRRTPQDNQNHQVSLSKQ*,ATGGAGCCAGTAGATCCTAGACTGGAGCCCTGGAAGCATCCAGGGAGTCAGCCTAAGACTGCTTGCACCAGTTGCTATTGTAAAAGGTGTTGCTATCATTGCCCGCGATGCTTCTTAACAAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAACTCCTCAGGATAACCAGAACCATCAAGTTTCTTTATCAAAACAGTGA +MK115211.1,rev_exon1,5432,5513,5969,6045,forward,0.5343731946851531,MAGRSGDSDEELLRITRTIKFLYQNSE,MAGRSGDSDEELLRITRTIKFLYQNSE,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAACTCCTCAGGATAACCAGAACCATCAAGTTTCTTTATCAAAACAGTGAG +MK115211.1,vpu,5524,5794,6061,6310,forward,0.5454220314735337,MQSLEILAIVALVVAFIIAIVVWSIVFIEYRKIRRQKRIDRILDRIRERAEDSGNESEGDQEELAALVEMGNHAHLGMGHHAPWEVNDL,MQSLEILAIVALVVAFIIAIVVWSIVFIEYRKIRRQKRIDRILDRIRERAEDSGNESEGDQEELAALVEMGNHAHLGMGHHAPWEVNDL*,ATGCAATCTTTAGAAATATTAGCAATAGTAGCATTAGTAGTAGCATTTATAATAGCAATAGTCGTTTGGTCTATAGTATTCATAGAATATAGGAAAATAAGAAGACAAAAGAGAATAGACAGGATACTTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGGGACCAAGAAGAATTGGCAGCCCTCGTGGAGATGGGGAACCATGCTCATTTGGGGATGGGCCACCATGCTCCTTGGGAGGTCAATGACCTGTAA +MK115211.1,env,5687,8198,6224,8795,forward,0.6604956436074259,MHSFNCRGEFFYCNTTQLFNSTWNSTTGVNGTGANNTEVNIITLPCKIKQIVNMWQEVGKAMYAPPISGQISCSSNITGLLLLRDGGNSNDTDNTTEIFRPGGGDMRDNWRSELYKYKVVQIEPLGVAPTKARRRVVQREKRAVGIGALFLGFLGAAGSTMGAASITLTVQARHLLSGIVQQQNNLLRAIEAQQHMLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTNVPWNSSWSNKNLSYIWNNMTWMQWEKEIDNYTEVIYNLIEQSQNQQEKNEQELLELDKWASLWTWFDITKWLWYIKIFIMIVGGLIGLRIVFTVLSIVNRVRQGYSPLSFQTLLPAARGPDRPEGIGEEGGERDRDRSSHLAHGFLTIIWVDLRSLFLFSYHHLRDLLLIVARGVELLGRRGWEALKYWWNLLQYWSQELKNSAVSLLNATAIAVAEGTDRFIEVLQRIFRAIIHIPTRIRQGLERALL,MRVKGTKKNWQPSWRWGTMLIWGWATMLLGRSMTCNAEDSWVTVYYGVPVWKEATTTLFCASDAKAYDPEVHNVWATHACVPTDPNPQEVELNVTENFNAWKNNMVDQMHEDIISLWDQSLKPCVKLTPLCVTLNCTELKNSTTINNTSSIEEGEMKNCSFNATTAIRDKVQKQYALFYRLDVVQIKDDNTSYNTRYRLINCNSATITQACPKVSFEPIPIH*VQCTHGIRPVVSTQLLLNGSLAEGDVVIRSKNFSNSAQTIIVQLNETVEINCTRPNNNTRKSIHIGPGRAFYATGDIIGDIRKAHCNISRAKWNETLKKIADKLREQFKRETIVFNQSSGGDPEIVMHSFNCRGEFFYCNTTQLFNSTWNSTTGVNGTGANNTEVNIITLPCKIKQIVNMWQEVGKAMYAPPISGQISCSSNITGLLLLRDGGNSNDTDNTTEIFRPGGGDMRDNWRSELYKYKVVQIEPLGVAPTKARRRVVQREKRAVGIGALFLGFLGAAGSTMGAASITLTVQARHLLSGIVQQQNNLLRAIEAQQHMLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTNVPWNSSWSNKNLSYIWNNMTWMQWEKEIDNYTEVIYNLIEQSQNQQEKNEQELLELDKWASLWTWFDITKWLWYIKIFIMIVGGLIGLRIVFTVLSIVNRVRQGYSPLSFQTLLPAARGPDRPEGIGEEGGERDRDRSSHLAHGFLTIIWVDLRSLFLFSYHHLRDLLLIVARGVELLGRRGWEALKYWWNLLQYWSQELKNSAVSLLNATAIAVAEGTDRFIEVLQRIFRAIIHIPTRIRQGLERALL*,ATGAGAGTGAAGGGGACCAAGAAGAATTGGCAGCCCTCGTGGAGATGGGGAACCATGCTCATTTGGGGATGGGCCACCATGCTCCTTGGGAGGTCAATGACCTGTAATGCAGAAGACTCGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAAAGAAGCAACCACCACTCTATTTTGTGCATCAGATGCCAAAGCATATGACCCAGAGGTACACAATGTCTGGGCCACACATGCTTGTGTACCCACAGACCCCAACCCACAAGAAGTAGAATTAAATGTGACAGAAAATTTTAATGCATGGAAAAATAACATGGTAGATCAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAACTGCACTGAGTTGAAGAATAGCACTACTATAAACAATACCAGTAGTATAGAAGAAGGAGAAATGAAAAACTGTTCTTTTAATGCCACCACAGCAATAAGAGATAAGGTGCAAAAACAATATGCACTTTTTTATAGACTTGATGTAGTACAAATTAAGGATGATAATACCAGCTATAATACCAGATATAGGTTGATAAATTGTAACTCCGCAACCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTAGGTACAATGTACACATGGAATTAGGCCAGTAGTATCAACTCAACTGTTGTTAAATGGCAGTCTAGCAGAAGGAGATGTAGTAATTAGATCTAAAAATTTCTCTAACAGTGCTCAAACCATAATAGTACAATTAAACGAAACTGTAGAAATTAATTGTACAAGACCCAACAATAATACAAGAAAAAGTATACATATAGGACCAGGGAGAGCATTTTATGCAACAGGAGACATAATAGGAGATATAAGAAAAGCACATTGTAACATTAGTAGAGCAAAATGGAATGAGACTTTAAAAAAGATAGCTGATAAATTAAGGGAACAATTTAAAAGAGAGACAATAGTCTTTAACCAATCCTCAGGAGGGGACCCAGAGATTGTAATGCACAGTTTTAATTGTAGAGGGGAATTTTTCTACTGTAATACAACACAACTGTTTAATAGTACTTGGAATAGTACTACAGGAGTAAATGGTACAGGAGCAAATAATACAGAAGTAAATATTATCACACTCCCATGCAAGATAAAGCAAATTGTAAACATGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCATCAGTGGACAAATTAGTTGTTCATCAAATATTACAGGGCTACTACTACTAAGAGATGGTGGTAATAGCAATGACACGGATAACACGACTGAAATCTTCAGACCTGGAGGAGGAGATATGAGAGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTACAAATTGAACCATTAGGAGTAGCACCCACCAAGGCAAGGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTCTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCATCAATAACGCTGACGGTACAAGCCAGACACTTATTGTCTGGTATAGTGCAACAGCAGAACAATTTGCTGAGAGCTATTGAGGCGCAACAGCATATGTTGCAGCTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTAGAAAGATACCTTAAGGATCAACAGCTCCTGGGGATTTGGGGTTGCTCTGGAAAACTCATCTGCACCACTAATGTGCCTTGGAATAGTAGTTGGAGTAATAAAAATCTGAGTTACATTTGGAATAACATGACCTGGATGCAGTGGGAAAAAGAAATTGACAATTACACAGAGGTAATATACAACTTAATTGAACAATCGCAAAACCAGCAAGAAAAGAATGAACAAGAATTATTGGAATTGGATAAATGGGCAAGTTTGTGGACTTGGTTTGACATAACAAAGTGGCTGTGGTATATAAAAATATTTATAATGATAGTAGGAGGCTTAATAGGTTTAAGAATAGTTTTTACTGTACTTTCTATAGTGAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCTCCTCCCAGCCGCGAGGGGACCCGACAGGCCCGAAGGAATCGGAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCAGTCACTTAGCGCATGGATTCTTAACAATTATCTGGGTCGACCTGCGGAGCCTGTTCCTCTTCAGCTACCACCACTTGAGAGACTTACTCTTGATTGTAGCGAGGGGTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAGTATTGGTGGAATCTCCTGCAGTATTGGAGCCAGGAACTAAAGAATAGTGCTGTCAGCTTGCTCAACGCCACAGCCATAGCAGTAGCTGAGGGGACAGATAGGTTTATAGAAGTATTGCAAAGAATTTTTAGAGCTATTATCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCTTTGCTATAA +MK115211.1,tat_exon2,7779,7872,8376,8469,forward,0.439759036144578,RPSSQPRGDPTGPKESEKKVERETETDPVT,RPSSQPRGDPTGPKESEKKVERETETDPVT*,AGACCCTCCTCCCAGCCGCGAGGGGACCCGACAGGCCCGAAGGAATCGGAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCAGTCACTTAG +MK115211.1,rev_exon2,7780,8056,8377,8653,forward,0.4267425320056898,DPPPSREGTRQARRNRRRRWRERQRQIQSLSAWILNNYLGRPAEPVPLQLPPLERLTLDCSEGCGTSGTQGVGSPQVLVESPAVLEPGTKE,DPPPSREGTRQARRNRRRRWRERQRQIQSLSAWILNNYLGRPAEPVPLQLPPLERLTLDCSEGCGTSGTQGVGSPQVLVESPAVLEPGTKE*,GACCCTCCTCCCAGCCGCGAGGGGACCCGACAGGCCCGAAGGAATCGGAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCAGTCACTTAGCGCATGGATTCTTAACAATTATCTGGGTCGACCTGCGGAGCCTGTTCCTCTTCAGCTACCACCACTTGAGAGACTTACTCTTGATTGTAGCGAGGGGTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAGTATTGGTGGAATCTCCTGCAGTATTGGAGCCAGGAACTAAAGAATAG +MK115211.1,nef,8199,8838,8796,9417,forward,0.5282692069776047,MGGIFSKRNGGGWPAIRERMRRAQPAADGVGAASRDLERHGALTSNNTPANNADCAWLEAQEEGEEVGFPVRPQVPLRPMTYKGAVDLSHFLKEKGGLEGLIYSQQRQDILDLWVYNTQGYFPDWQNYTPGPGIRYPLTFGWCFKLVPMEPEDVEKATEGEDNILLHPVNQHGMDDPDKEVLVWKFDSRLAFRHVAREIHPEYYKNC,MGGIFSKRNGGGWPAIRERMRRAQPAADGVGAASRDLERHGALTSNNTPANNADCAWLEAQEEGEEVGFPVRPQVPLRPMTYKGAVDLSHFLKEKGGLEGLIYSQQRQDILDLWVYNTQGYFPDWQNYTPGPGIRYPLTFGWCFKLVPMEPEDVEKATEGEDNILLHPVNQHGMDDPDKEVLVWKFDSRLAFRHVAREIHPEYYKNC*QRAF*,ATGGGAGGCATATTCTCAAAACGTAATGGGGGTGGGTGGCCTGCAATAAGGGAAAGAATGAGACGAGCTCAGCCAGCAGCAGATGGGGTAGGAGCAGCATCTCGAGACCTGGAAAGACATGGAGCTCTCACAAGTAACAATACACCAGCTAACAATGCTGATTGTGCCTGGCTGGAAGCACAGGAAGAGGGGGAAGAAGTGGGTTTCCCAGTCAGACCTCAGGTACCTTTAAGACCAATGACATACAAGGGAGCTGTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGTTAATTTACTCCCAACAAAGACAAGATATCCTTGATCTGTGGGTCTACAACACACAGGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGATAAGATATCCACTGACCTTTGGATGGTGCTTCAAGCTAGTGCCAATGGAACCAGAGGATGTAGAAAAGGCCACTGAAGGAGAGGACAACATCTTGTTACACCCTGTGAACCAGCATGGGATGGACGACCCAGATAAAGAAGTGTTAGTGTGGAAGTTTGACAGCCGCCTAGCATTCCGTCACGTGGCCCGAGAGATACATCCGGAGTACTACAAGAACTGCTGACAGCGAGCTTTCTAA +MK115158.1,gag,316,1819,234,1731,forward,0.36195426195426217,MGARASVLSGGELDKWEKIRLRPGGKKQYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPALQTGSEELKSLFNTVAVLYCVHQRIEIKDTKEALDKIEEEQNKSKKKTQQAAADPGNSNQVSQNYPIVQNMQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSASVMMQKGNFRSQRKMVKCFNCGKEGHIARNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFPQSRTEPTAPPEESFSFGEKTTTPSQKQEPIDQELYPMSSLKSLFGNDP,MGARASVLSGGELDKWEKIRLRPGGKKQYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPALQTGSEELKSLFNTVAVLYCVHQRIEIKDTKEALDKIEEEQNKSKKKTQQAAADPGNSNQVSQNYPIVQNMQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSASVMMQKGNFRSQRKMVKCFNCGKEGHIARNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFPQSRTEPTAPPEESFSFGEKTTTPSQKQEPIDQELYPMSSLKSLFGNDP*SQ*,ATGGGTGCGAGAGCGTCGGTATTAAGCGGGGGAGAATTAGACAAATGGGAGAAAATTCGGTTAAGGCCAGGGGGAAAGAAACAATATAAGTTAAAACATATAGTATGGGCAAGCAGGGAACTGGAACGATTCGCAGTTAATCCTGGCCTGTTAGAAACATCAGAAGGCTGTAGACAAATACTGGGACAGCTACAACCAGCCCTTCAGACAGGATCAGAGGAACTTAAATCATTATTTAATACAGTAGCAGTCCTCTATTGTGTGCATCAAAGGATAGAGATAAAAGACACCAAGGAAGCTTTAGACAAGATAGAGGAAGAACAAAACAAAAGTAAGAAAAAGACACAGCAAGCAGCAGCTGACCCAGGAAATAGCAACCAGGTCAGCCAAAATTACCCTATAGTGCAGAACATGCAGGGGCAAATGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTGAAAGTAGTAGAAGAGAAGGCTTTTAGCCCAGAAGTAATACCCATGTTTTCAGCCTTATCAGAAGGAGCCACCCCACAAGATTTGAACACGATGCTAAACACAGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACTATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCGATTGCACCAGGCCAGATGAGAGAACCGAGGGGAAGTGACATAGCAGGAACCACCAGTACCCTTCAGGAGCAAATAGGATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTACAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGAATGTATAGTCCTACCAGCATTCTGGACATAAGACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGATCGGTTCTATAAAACTCTAAGAGCCGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAGAATGCAAACCCAGATTGTAAGACCATTTTAAAAGCATTAGGTCCAGCAGCTACACTAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCCGGCCATAAGGCAAGAGTTTTGGCGGAAGCAATGAGCCAAGTAACAAACTCAGCTTCCGTGATGATGCAGAAAGGCAATTTTAGGAGCCAAAGAAAGATGGTTAAGTGTTTCAATTGTGGCAAAGAAGGACACATAGCCAGAAATTGCAGGGCCCCTAGGAAAAGGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGATTGTACTGAGAGACAGGCAAATTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGGAGGCCAGGGAACTTTCCTCAAAGCAGAACAGAACCAACAGCCCCACCAGAGGAGAGCTTCAGTTTTGGGGAAAAGACAACAACTCCTTCTCAGAAGCAGGAGCCGATAGACCAGGAACTATACCCTATGTCTTCCCTCAAATCACTCTTTGGCAACGACCCTTAGTCACAGTAA +MK115158.1,pol,1611,4623,1526,4535,forward,0.2990160678822892,FFRENLAFPQGEARELSSKQNRTNSPTRGELQFWGKDNNSFSEAGADRPGTIPYVFPQITLWQRPLVTVRIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVKQYDQISVEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPRVKQWPLTEEKIKALTEICKEMEKEGKISKIGPENPYNTPIFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTRILEPFRKQNPDMVIYQYMDDLYVGSDLEIGQHRTKVEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGAKALTEVVPLTEEAELELAENREILKEPVHGVYYDPTKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWESWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIIGAETFYVDGAANRETKSGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIQKEKVYLAWVPAHKGIGGNEQVDKLVSSGIRKVLFLDGIDKAQEDHEKYHSNWRAMASDFNIPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPNFTSNAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKQLKQIIGQVREQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDGCVASRQDED,FFRENLAFPQGEARELSSKQNRTNSPTRGELQFWGKDNNSFSEAGADRPGTIPYVFPQITLWQRPLVTVRIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVKQYDQISVEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPRVKQWPLTEEKIKALTEICKEMEKEGKISKIGPENPYNTPIFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTRILEPFRKQNPDMVIYQYMDDLYVGSDLEIGQHRTKVEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGAKALTEVVPLTEEAELELAENREILKEPVHGVYYDPTKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWESWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIIGAETFYVDGAANRETKSGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIQKEKVYLAWVPAHKGIGGNEQVDKLVSSGIRKVLFLDGIDKAQEDHEKYHSNWRAMASDFNIPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPNFTSNAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKQLKQIIGQVREQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDGCVASRQDED*,TTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGGAGGCCAGGGAACTTTCCTCAAAGCAGAACAGAACCAACAGCCCCACCAGAGGAGAGCTTCAGTTTTGGGGAAAAGACAACAACTCCTTCTCAGAAGCAGGAGCCGATAGACCAGGAACTATACCCTATGTCTTCCCTCAAATCACTCTTTGGCAACGACCCTTAGTCACAGTAAGGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTGTTAGAAGAAATGAGTCTACCAGGAAGATGGAAGCCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAAACAGTATGATCAGATATCAGTAGAAATTTGTGGACATAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAATATAATTGGAAGAAATCTGTTGACTCAGATTGGTTGTACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAGAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAACAGAAATTTGTAAGGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAATATTTGCAATAAAGAAAAAAGACAGTACTAAATGGAGAAAGTTAGTAGATTTTAGAGAACTTAATAAGAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACACCCCGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCCTAGATAAAGACTTCAGGAAATATACTGCATTTACCATACCTAGTACAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTACTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAGAATCTTAGAGCCTTTTAGAAAACAAAATCCAGACATGGTTATATATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAGTAGAGGAACTGAGACAACATCTGTTGAAGTGGGGGTTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTTCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATACAACTGCCAGAGAAAGACAGCTGGACTGTCAATGATATACAGAAATTAGTGGGAAAGTTGAATTGGGCAAGTCAGATTTATCCAGGGATTAAAGTAAGGCAGTTATGTAAACTACTTAGAGGAGCCAAGGCGCTAACAGAAGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATCCTAAAAGAACCAGTGCATGGAGTGTATTATGACCCAACAAAAGACTTAATAGCAGAAATACAGAAGCAGGGGCAAGGTCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAACTTGAAAACAGGAAAATATGCAAGAACAAGGGGTGCTCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAGCCACAGAAAGCATAGTAATATGGGGAAAGACCCCTAAATTTAGACTACCCATTCAAAAAGAAACATGGGAATCATGGTGGACAGAATATTGGCAAGCCACTTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAAAAAGAACCCATAATAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACAAAATCAGGAAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAAGTTATCTCCCTAACTGACACAACAAATCAGAAGACTGAGTTACAAGCAATTCATCTAGCTTTGCAGGATTCAGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAGGCACAACCAGATAAAAGCGAATCAGAGTTAGTCAATCAAATAATAGAGCAATTAATACAAAAGGAAAAGGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGGGGAAATGAACAAGTAGATAAATTAGTCAGTTCTGGAATCAGAAAGGTACTATTTTTGGATGGAATAGATAAGGCCCAAGAAGATCATGAAAAATATCACAGTAATTGGAGAGCAATGGCTAGTGACTTTAACATACCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGAGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAATTAGATTGTACACATTTAGAAGGAAAAATTATCCTGGTAGCAGTTCATGTAGCTAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGACAGGAAACAGCATACTTTCTCTTAAAATTAGCAGGAAGATGGCCAGTAACAACAATACATACAGACAATGGCCCCAACTTCACCAGTAATGCAGTTAAGGCCGCCTGTTGGTGGGCAGGGGTCAAACAAGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTTGTAGAATCTATGAATAAACAATTAAAACAAATTATAGGACAGGTAAGAGAGCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAATAGACATAATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAACTTCTTTGGAAAGGTGAGGGGGCAGTAGTAATACAAGATAATAGTGACATAAAAGTAGTACCAAGAAGAAAAGCAAAAATTATTAGGGATTATGGAAAACAGATGGCAGGTGATGGTTGTGTGGCAAGTAGACAGGATGAGGATTAA +MK115158.1,vif,4567,5149,4479,5061,forward,0.4776041211909543,MENRWQVMVVWQVDRMRINMWKSLVKYHIHNSGKARGWCYRHHYESRHPRISSEVHIPLGGEARLVVTTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPDLADQLIHLYYFNCFSESAIRQAILGHRVSPRCEYQAGHNKVGSLQYLALIALIPPKRRKPPLPSVRKRTEDRWNEPQRTKGHRESHTMNGH,MENRWQVMVVWQVDRMRINMWKSLVKYHIHNSGKARGWCYRHHYESRHPRISSEVHIPLGGEARLVVTTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPDLADQLIHLYYFNCFSESAIRQAILGHRVSPRCEYQAGHNKVGSLQYLALIALIPPKRRKPPLPSVRKRTEDRWNEPQRTKGHRESHTMNGH*,ATGGAAAACAGATGGCAGGTGATGGTTGTGTGGCAAGTAGACAGGATGAGGATTAACATGTGGAAAAGTTTAGTAAAATACCATATACATAATTCAGGGAAGGCTAGGGGATGGTGTTATAGACATCACTATGAAAGCAGACATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGAGGAGAGGCTAGACTAGTAGTGACAACATATTGGGGCCTGCATACAGGAGAAAGAGACTGGCATTTGGGTCAAGGAGTCTCCATAGAATGGAGGAAAAGGAGATATAGCACACAAGTAGACCCTGACCTAGCAGACCAACTAATTCATCTGTATTATTTTAATTGTTTTTCAGAATCTGCTATAAGACAAGCCATATTAGGACATAGAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAATAAGGTAGGATCTCTGCAGTACTTGGCACTAATAGCATTAATACCACCAAAAAGGAGAAAGCCACCTTTGCCTAGTGTGAGGAAACGGACAGAGGATAGATGGAACGAGCCCCAGAGGACCAAGGGCCACAGAGAGAGCCATACAATGAATGGACACTAG +MK115158.1,vpr,5088,5379,5000,5291,forward,0.43053960964408733,MERAPEDQGPQREPYNEWTLELLEELKREAVRHFPRAWLHGLGQHIYETYGDTWAGVEALIRILQQLVFIHFRIGCQHSRIGILTHRRARNGASRS,MERAPEDQGPQREPYNEWTLELLEELKREAVRHFPRAWLHGLGQHIYETYGDTWAGVEALIRILQQLVFIHFRIGCQHSRIGILTHRRARNGASRS*,ATGGAACGAGCCCCAGAGGACCAAGGGCCACAGAGAGAGCCATACAATGAATGGACACTAGAACTTTTAGAAGAGCTTAAAAGAGAAGCTGTTAGGCACTTTCCTAGGGCATGGCTTCACGGCCTGGGACAACATATCTATGAAACTTATGGAGATACTTGGGCAGGAGTGGAAGCTCTAATAAGAATTCTGCAACAACTGGTGTTTATTCATTTCAGAATTGGATGTCAGCACAGCAGGATAGGCATTCTTACCCATAGAAGAGCAAGAAATGGAGCCAGTAGATCCTAG +MK115158.1,tat_exon1,5359,5578,5271,5486,forward,0.46628407460545196,MEPVDPRLEPWKHPGSQPRTACTSCYCKKCCYHCPRCFLTKGLGISYGRKKRRQRRRTPQDNQNHQVSLSKQ,MEPVDPRLEPWKHPGSQPRTACTSCYCKKCCYHCPRCFLTKGLGISYGRKKRRQRRRTPQDNQNHQVSLSKQ*,ATGGAGCCAGTAGATCCTAGACTGGAGCCCTGGAAGCATCCAGGGAGTCAGCCTAGGACTGCGTGCACCAGTTGCTATTGTAAAAAGTGTTGCTATCATTGCCCGCGATGCTTCTTAACAAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAACTCCTCAAGATAACCAGAACCATCAAGTTTCTTTATCAAAACAGTGA +MK115158.1,rev_exon1,5498,5579,5410,5486,forward,0.5474452554744527,MAGRSGDSDEELLKITRTIKFLYQNSE,MAGRSGDSDEELLKITRTIKFLYQNSE,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAACTCCTCAAGATAACCAGAACCATCAAGTTTCTTTATCAAAACAGTGAG +MK115158.1,vpu,5590,5860,5502,5748,forward,0.4612744046341988,MQSLEILAIVALVVAFIIAIVVWSIVLIEYRKIRRQKRIDRILDRIRERAEDSGNESEGDQEELAALVEMGNHAHLGMGHHAPWDVNDL,MQSLEILAIVALVVAFIIAIVVWSIVLIEYRKIRRQKRIDRILDRIRERAEDSGNESEGDQEELAALVEMGNHAHLGMGHHAPWDVNDL*,ATGCAATCCTTAGAAATATTAGCAATAGTAGCATTAGTAGTAGCATTTATAATAGCAATAGTTGTTTGGTCTATAGTACTCATAGAATATAGGAAAATAAGAAGACAAAAGAGAATAGACAGGATACTTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGGGACCAAGAAGAATTGGCAGCCCTCGTGGAGATGGGGAACCATGCTCATTTGGGGATGGGCCACCATGCTCCTTGGGATGTCAATGACCTGTAA +MK115158.1,env,5753,8342,5665,8212,forward,0.48076163387848647,MRVKGTKKNWQPSWRWGTMLIWGWATMLLGMSMTCNAEDSWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVELNVTENFNAWKNNMVDQMHEDIISLWDQSLKPCVKLTPLCVTLNCTELKNSTGEMKNCSFNATTAIRDKVQKQYALFYRLDVVQIKDDNTSYNTRYRLINCNSSTITQACPKVSFEPIPIHYCAPAGFAILKCKDKNFNGTGLCENVSTVQCTHGIRPVVSTQLLLNGSLAEGDVVIRSKNFSNSAQTIIVQLNETVEINCTRPNNNTRKSIHIGPGRAFYATGDIIGDIRQAHCNISRAKWNETLKKIADKLREQFKRETIVFNQSSGGDPEIVMHSFNCRGEFFYCNTTQLFNSTWNSTTGVNGTGANNTEVNIITLPCKIKQIVNMWQEVGKAMYAPPISGQISCSSNITGLLLLRDGGNSNDTDNTTEIFRPGGGDMRDNWRSELYKYKVVQIEPLGVAPTKARRRVVQREKRAVGIGALFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQNNLLRAIEAQQHMLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTNVPWNSSWSNKNLSYIWNNMTWMQWEKEIDNYTEEIYNLIEQSQNQQEKNEQELLELDKWASLWTWFDITKWLWYIKIFIMIVGGLIGLRIVFTVLSIVNRVRQGYSPLSFQTLLPAARGPDRPEGIGEEGGERDRDRSSHLAHGFLTIIWVDLRSLFLFSYHHLRDLLLIVARGVELLGRRGWEALKYWWNLLQYWSQELKNSAVSLLNATAIAVAEGTDRFIEVLQRIFRAIIHIPTRIRQGLERALL,MRVKGTKKNWQPSWRWGTMLIWGWATMLLGMSMTCNAEDSWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVELNVTENFNAWKNNMVDQMHEDIISLWDQSLKPCVKLTPLCVTLNCTELKNSTGEMKNCSFNATTAIRDKVQKQYALFYRLDVVQIKDDNTSYNTRYRLINCNSSTITQACPKVSFEPIPIHYCAPAGFAILKCKDKNFNGTGLCENVSTVQCTHGIRPVVSTQLLLNGSLAEGDVVIRSKNFSNSAQTIIVQLNETVEINCTRPNNNTRKSIHIGPGRAFYATGDIIGDIRQAHCNISRAKWNETLKKIADKLREQFKRETIVFNQSSGGDPEIVMHSFNCRGEFFYCNTTQLFNSTWNSTTGVNGTGANNTEVNIITLPCKIKQIVNMWQEVGKAMYAPPISGQISCSSNITGLLLLRDGGNSNDTDNTTEIFRPGGGDMRDNWRSELYKYKVVQIEPLGVAPTKARRRVVQREKRAVGIGALFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQNNLLRAIEAQQHMLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTNVPWNSSWSNKNLSYIWNNMTWMQWEKEIDNYTEEIYNLIEQSQNQQEKNEQELLELDKWASLWTWFDITKWLWYIKIFIMIVGGLIGLRIVFTVLSIVNRVRQGYSPLSFQTLLPAARGPDRPEGIGEEGGERDRDRSSHLAHGFLTIIWVDLRSLFLFSYHHLRDLLLIVARGVELLGRRGWEALKYWWNLLQYWSQELKNSAVSLLNATAIAVAEGTDRFIEVLQRIFRAIIHIPTRIRQGLERALL*NGRHILKT*,ATGAGAGTGAAGGGGACCAAGAAGAATTGGCAGCCCTCGTGGAGATGGGGAACCATGCTCATTTGGGGATGGGCCACCATGCTCCTTGGGATGTCAATGACCTGTAATGCAGAAGACTCGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAAAGAAGCAACCACCACTCTATTTTGTGCATCAGATGCCAAAGCATATGACACAGAGGTACACAATGTCTGGGCCACACATGCTTGTGTACCCACAGACCCCAACCCACAAGAAGTAGAATTAAATGTGACAGAAAATTTTAATGCATGGAAAAATAACATGGTAGATCAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAACTGCACTGAGTTGAAGAATAGCACTGGAGAAATGAAAAACTGTTCTTTTAATGCCACCACAGCAATAAGAGATAAGGTGCAAAAACAATATGCACTTTTTTATAGACTTGATGTAGTACAAATTAAGGATGATAATACCAGCTATAATACCAGATATAGGTTGATAAATTGTAACTCCTCAACCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAGGATAAGAATTTCAATGGAACAGGACTATGTGAAAATGTTAGCACAGTACAATGTACACATGGAATTAGACCAGTAGTATCAACTCAACTGTTGTTAAATGGCAGTCTAGCAGAAGGAGATGTAGTAATTAGATCTAAAAATTTCTCTAACAGTGCTCAAACCATAATAGTACAATTAAACGAAACTGTAGAAATTAATTGTACAAGACCCAACAATAATACAAGAAAAAGTATACATATAGGACCAGGGAGAGCATTTTATGCAACAGGAGACATAATAGGAGATATAAGACAAGCACATTGTAACATTAGTAGAGCAAAATGGAATGAGACTTTAAAAAAGATAGCTGATAAATTAAGGGAACAATTTAAAAGGGAGACAATAGTCTTTAACCAATCCTCAGGAGGGGACCCAGAGATTGTAATGCACAGTTTTAATTGTAGAGGGGAATTTTTCTACTGTAATACAACACAACTGTTTAATAGTACTTGGAATAGTACTACAGGAGTAAATGGTACAGGAGCAAATAATACAGAAGTAAATATTATCACACTCCCATGCAAGATAAAGCAAATTGTAAACATGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCATCAGTGGACAAATTAGTTGTTCATCAAATATTACAGGGCTACTACTACTAAGAGATGGTGGTAATAGCAATGACACGGATAACACGACTGAAATCTTCAGACCTGGAGGAGGAGATATGAGAGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTACAAATTGAACCATTAGGAGTAGCACCCACCAAGGCAAGGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTCTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCATCAATAACGCTGACGGTACAAGCCAGACAATTATTGTCTGGTATAGTGCAACAGCAGAACAATTTGCTGAGAGCTATTGAGGCGCAACAGCATATGTTGCAGCTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTAGAAAGATACCTTAAGGATCAACAGCTCCTGGGGATTTGGGGTTGCTCTGGAAAACTCATCTGCACCACTAATGTGCCTTGGAATAGTAGTTGGAGTAATAAAAATCTGAGTTATATCTGGAATAACATGACCTGGATGCAGTGGGAAAAAGAAATTGACAATTACACAGAGGAAATATACAACTTAATTGAACAATCGCAAAACCAGCAAGAAAAGAATGAACAAGAATTATTGGAATTGGATAAATGGGCAAGTTTGTGGACTTGGTTTGACATAACAAAGTGGCTGTGGTATATAAAAATATTTATAATGATAGTAGGAGGCTTAATAGGTTTAAGAATAGTTTTTACTGTACTTTCTATAGTGAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCTCCTCCCAGCCGCGAGGGGACCCGACAGGCCCGAAGGAATCGGAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCAGTCACTTAGCGCATGGATTCTTAACAATTATCTGGGTCGACCTGCGGAGCCTGTTCCTCTTCAGCTACCACCACTTGAGAGACTTACTCTTGATTGTAGCGAGGGGAGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAGTATTGGTGGAATCTCCTGCAGTATTGGAGCCAGGAACTAAAGAATAGTGCTGTCAGCTTGCTCAACGCCACAGCCATAGCAGTAGCTGAGGGGACAGATAGGTTTATAGAAGTATTGCAAAGAATTTTTAGAGCTATTATCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCTTTGCTATAAAATGGGAGGCATATTCTCAAAACGTAA +MK115158.1,tat_exon2,7896,7992,7793,7886,forward,0.5279960707269156,RPSSQPRGDPTGPKESEKKVERETETDPVT,RPSSQPRGDPTGPKESEKKVERETETDPVT*R,AGACCCTCCTCCCAGCCGCGAGGGGACCCGACAGGCCCGAAGGAATCGGAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCAGTCACTTAGCGC +MK115158.1,rev_exon2,7897,8173,7794,8070,forward,0.45968205324650446,DPPPSREGTRQARRNRRRRWRERQRQIQSLSAWILNNYLGRPAEPVPLQLPPLERLTLDCSEGSGTSGTQGVGSPQVLVESPAVLEPGTKE,DPPPSREGTRQARRNRRRRWRERQRQIQSLSAWILNNYLGRPAEPVPLQLPPLERLTLDCSEGSGTSGTQGVGSPQVLVESPAVLEPGTKE*,GACCCTCCTCCCAGCCGCGAGGGGACCCGACAGGCCCGAAGGAATCGGAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCAGTCACTTAGCGCATGGATTCTTAACAATTATCTGGGTCGACCTGCGGAGCCTGTTCCTCTTCAGCTACCACCACTTGAGAGACTTACTCTTGATTGTAGCGAGGGGAGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAGTATTGGTGGAATCTCCTGCAGTATTGGAGCCAGGAACTAAAGAATAG +MK115158.1,nef,8316,8994,8213,8834,forward,0.518437523565342,MGGIFSKRNGGGWPAIRERMRRAQPAADGVGAASRDLERHGALTSNNTPANNADCAWLEAQEEGEEVGFPVRPQVPLRPMTYKGAVDLSHFLKEKGGLEGLIYSQQRQDILDLWVYNTQGYFPDWQNYTPGPGIRYPLTFGWCFKLVPMEPEDVEKATEGEDNILLHPVNQHGMDDSEREVLVWKFDSRLAFRHVAREIHPEYYKNC,MGGIFSKRNGGGWPAIRERMRRAQPAADGVGAASRDLERHGALTSNNTPANNADCAWLEAQEEGEEVGFPVRPQVPLRPMTYKGAVDLSHFLKEKGGLEGLIYSQQRQDILDLWVYNTQGYFPDWQNYTPGPGIRYPLTFGWCFKLVPMEPEDVEKATEGEDNILLHPVNQHGMDDSEREVLVWKFDSRLAFRHVAREIHPEYYKNC*QRAFYKGLSARDFPGEA*,ATGGGAGGCATATTCTCAAAACGTAATGGGGGTGGGTGGCCTGCAATAAGGGAAAGAATGAGACGAGCTCAGCCAGCAGCAGATGGGGTAGGAGCAGCATCTCGAGACCTGGAAAGACATGGAGCTCTCACAAGTAACAATACACCAGCTAACAATGCTGATTGTGCCTGGCTGGAAGCACAGGAAGAGGGGGAAGAAGTGGGTTTCCCAGTCAGACCTCAGGTACCTTTAAGACCAATGACATACAAGGGAGCTGTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGTTAATTTACTCCCAACAAAGACAAGATATCCTTGATCTGTGGGTCTACAACACACAGGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGATAAGATATCCACTGACCTTTGGATGGTGCTTCAAGCTAGTGCCAATGGAACCAGAGGATGTAGAAAAGGCCACTGAAGGAGAGGACAACATCTTGTTACACCCTGTGAACCAGCATGGGATGGACGACTCAGAGAGAGAAGTGTTAGTGTGGAAGTTTGACAGCCGCCTAGCATTCCGTCACGTGGCCCGAGAGATACATCCGGAGTACTACAAGAACTGCTGACAGCGAGCTTTCTACAAGGGACTTTCCGCTAGGGACTTTCCAGGGGAGGCGTGA +MK114705.1,gag,532,2053,789,2292,forward,0.25730713943459504,MGARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNTIAVLYCVHQRIDVKDTKEALNKIEEEQNKSKKKAQQAAADTGNSSQSSQVSQNYPIVQNHQGQMVYQALSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHNPPIPVGEIYKRWIIMGLNKIVRMYSPISILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPSHKARVLAEAMSQATGGATNIMMQKGNFRNQGKPIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCSERQANFLGKIWPSHKGRPGNFLQNRPEPTAPPEESFRFGEETTAPPQKQEPTDKELYPFSSLKSLFGNDPSSQ,MGARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNTIAVLYCVHQRIDVKDTKEALNKIEEEQNKSKKKAQQAAADTGNSSQSSQVSQNYPIVQNHQGQMVYQALSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHNPPIPVGEIYKRWIIMGLNKIVRMYSPISILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPSHKARVLAEAMSQATGGATNIMMQKGNFRNQGKPIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCSERQANFLGKIWPSHKGRPGNFLQNRPEPTAPPEESFRFGEETTAPPQKQEPTDKELYPFSSLKSLFGNDPSSQ*R*,ATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGCGAATTAGATAGATGGGAGAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAAGTTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCGGTTAATCCTGGCCTGTTAGAAACATCAGAGGGCTGTAGGCAAATACTGGGACAGCTACAACCGTCCCTTCAAACAGGATCAGAAGAACTTAAATCATTATTTAATACAATAGCAGTCCTTTATTGCGTACATCAAAGGATAGATGTAAAAGACACCAAGGAAGCTCTAAATAAGATAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGCAGCAGCTGACACAGGAAACAGCAGTCAGAGCAGTCAAGTCAGCCAAAATTACCCTATAGTGCAGAACCATCAGGGGCAAATGGTATATCAGGCTCTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAGAAGGCTTTCAGCCCCGAGGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAGGCAGCCATGCAAATGTTAAAAGAGACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTACATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGGACTACTAGTACCCTTCAGGAACAAATAGGATGGATGACACATAATCCACCTATCCCAGTAGGAGAAATTTATAAAAGATGGATAATCATGGGGTTAAATAAAATAGTAAGAATGTATAGCCCTATCAGCATTCTGGACATAAGACAAGGACCAAAAGAACCTTTTAGAGATTATGTAGACCGGTTCTATAAAACTCTAAGAGCCGAGCAAGCTTCACAAGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAACCCAGATTGTAAGACCATTCTAAAAGCATTAGGACCAGCAGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGGGGACCCAGCCACAAAGCAAGAGTCTTGGCTGAAGCAATGAGCCAAGCAACAGGTGGTGCAACTAACATAATGATGCAGAAAGGCAATTTTAGGAACCAAGGAAAACCTATTAAGTGTTTCAATTGTGGCAAAGAAGGGCACCTAGCTAGAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGACTGCTCTGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGAAGGCCAGGGAATTTCCTCCAGAACAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAACAGCTCCCCCTCAGAAGCAGGAGCCGACAGACAAGGAACTGTATCCCTTCTCTTCCCTCAAATCACTCTTTGGCAACGACCCCTCGTCACAGTAAAGATAG +MK114705.1,pol,1839,4851,2084,5096,forward,0.21764839091160715,FFRENLAFPQGKAREFPPEQTRANSPTRRELQVWGRDNSSPSEAGADRQGTVSLLFPQITLWQRPLVTVKIGGQLKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTKIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDESFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIEQHRAKVENLREHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTEVITLTEEAELELAENREILKEPVHGVYYDPSKDLVAEIQKQGQGQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKIATESIVVWGKIPKFRLPIQKETWETWWMEYWQATWIPEWEFVSTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKKGKAGYVTDRGRQKVIPLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKEKVYLTWVPAHKGIGGNEQVDKLVSAGIRKILFLDGIDKAQEDHEKYHSNWKAMASDFNIPPVVAKEIIASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKIIHTDNGSNFTSTTVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGEYCAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSEIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED,FFRENLAFPQGKAREFPPEQTRANSPTRRELQVWGRDNSSPSEAGADRQGTVSLLFPQITLWQRPLVTVKIGGQLKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTKIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDESFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIEQHRAKVENLREHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTEVITLTEEAELELAENREILKEPVHGVYYDPSKDLVAEIQKQGQGQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKIATESIVVWGKIPKFRLPIQKETWETWWMEYWQATWIPEWEFVSTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKKGKAGYVTDRGRQKVIPLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKEKVYLTWVPAHKGIGGNEQVDKLVSAGIRKILFLDGIDKAQEDHEKYHSNWKAMASDFNIPPVVAKEIIASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKIIHTDNGSNFTSTTVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGEYCAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSEIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGAAGGCCAGGGAATTTCCTCCAGAACAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAACAGCTCCCCCTCAGAAGCAGGAGCCGACAGACAAGGAACTGTATCCCTTCTCTTCCCTCAAATCACTCTTTGGCAACGACCCCTCGTCACAGTAAAGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAAATACCCATAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTAAGATTGGTTGCACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAACCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCCGTATTTGCCATAAAGAAAAAGGATAGTACTAAATGGAGAAAGTTAGTAGATTTCAGAGAGCTTAATAAAAGAACTCAAGACTTTTGGGAGGTTCAATTAGGAATACCACATCCCGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTAGATGTGGGTGATGCATATTTCTCAGTTCCTTTAGATGAAAGCTTCAGAAAGTATACTGCATTTACCATACCTAGTACTAACAATGAGACACCCGGGATTAGGTATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTTCAAAGTAGCATGACGAAAATCTTAGAACCTTTTAGAAAACAAAATCCAGACATAGTTATCTACCAATACATGGATGATTTATACGTAGGATCTGACTTAGAAATAGAGCAGCATAGAGCAAAAGTAGAGAACCTGAGAGAGCATCTGTTGAGGTGGGGATTTACCACACCAGACAAAAAGCATCAGAAAGAACCTCCATTTCTTTGGATGGGCTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTGAATTGGGCAAGTCAGATTTATGCAGGGATTAAAGTAAAGCAATTATGTAAACTCCTTAGGGGAGCTAAGGCACTAACAGAAGTGATAACACTAACAGAAGAAGCAGAGCTAGAATTGGCAGAAAACAGAGAGATTCTAAAAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAGTAGCAGAAATACAGAAGCAGGGGCAAGGTCAATGGACCTATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAGTATGCAAGAACAAGGGGTGCCCACACTAATGATGTAAAACAGTTAACAGAAGCAGTTCAAAAAATAGCCACAGAGAGCATAGTAGTATGGGGAAAGATTCCTAAATTTAGATTACCCATACAGAAAGAAACATGGGAAACATGGTGGATGGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAGTACCCCTCCCTTAGTAAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAGACTAAAAAAGGAAAAGCAGGATATGTTACTGACAGAGGAAGGCAAAAAGTTATCCCCTTAACTGACACAACAAATCAGAAGACTGAGTTACAAGCAATTCATCTAGCTTTGCAGGATTCAGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGACAAGAGTGAATCAGAGTTAGTCAATCAAATAATAGAGCAGTTAATAAAAAAGGAGAAGGTCTACCTGACATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTGCAGGAATCAGGAAAATACTATTTTTGGATGGAATAGATAAGGCCCAGGAAGATCATGAGAAATATCATAGTAATTGGAAAGCAATGGCTAGTGATTTTAACATACCACCTGTGGTAGCAAAAGAGATAATAGCCAGCTGTGATAAATGTCAGCTAAAAGGGGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAACTAGATTGTACACATTTAGAAGGAAAAATTATCCTGGTAGCAGTCCATGTAGCCAGTGGGTACATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTATCTTAAAATTAGCAGGAAGATGGCCAGTAAAAATAATACATACAGATAATGGTAGCAATTTCACCAGCACTACAGTCAAGGCCGCCTGCTGGTGGGCAGGTGTTAAGCAGGAGTTTGGAATTCCCTACAATCCCCAAAGTCAAGGAGTAGTGGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGAGTACTGTGCAGGGGAAAGAATAATAGACATAATAGCAACAGACATACAAACTAAAGAACTACAAAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAGGGACCAGCAAAGCTGCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGAAATCAAAGTAGTACCAAGAAGAAAAGCAAAGATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG +MK114705.1,vif,4795,5383,5040,5619,forward,0.3566796368352788,MENRWQVMIVWQVDRMRIRTWKSLVKHHMYISKKAKGWVYRHHYESTHPRISSEVHIPLGDAKLVITTYWGLHTGERDWHLGQGVSIEWRKKRYNTQVDPGLADQLIHMYYFDCFSESAIRQAILGHRVSPSCEYQAGHNKVGSLQYLALAVLVAPKKIKPPLPSVARLTEDRWNKPRKIKGHRESHTMNGH,MENRWQVMIVWQVDRMRIRTWKSLVKHHMYISKKAKGWVYRHHYESTHPRISSEVHIPLGDAKLVITTYWGLHTGERDWHLGQGVSIEWRKKRYNTQVDPGLADQLIHMYYFDCFSESAIRQAILGHRVSPSCEYQAGHNKVGSLQYLALAVLVAPKKIKPPLPSVARLTEDRWNKPRKIKGHRESHTMNGH*NF*,ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAAAAGTCTAGTAAAACACCATATGTATATTTCAAAGAAAGCTAAGGGATGGGTTTACAGACACCACTATGAAAGCACTCATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAAATTGGTAATAACAACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCATTTGGGCCAGGGAGTCTCCATAGAATGGAGGAAAAAGAGATATAACACACAAGTAGACCCTGGCCTAGCAGACCAACTAATTCATATGTACTATTTTGATTGTTTTTCAGAATCTGCTATAAGACAAGCCATATTAGGACATAGAGTTAGTCCTAGTTGTGAATATCAAGCAGGACATAACAAGGTAGGATCTCTGCAATACCTGGCACTAGCAGTATTAGTAGCACCAAAAAAGATAAAGCCACCTTTGCCTAGTGTCGCGAGACTGACAGAGGATAGATGGAACAAGCCCCGGAAGATCAAGGGCCACAGAGAGAGCCATACAATGAATGGGCACTAGAACTTTTAG +MK114705.1,vpr,5313,5601,5558,5850,forward,0.42674253200569023,MEQAPEDQGPQREPYNEWALELLEELKREAVRHFPREWLHSLGQHIYETYGDTWAGVGAIIRILQQLLFIHFRIGCHHSRIGILRRTRNGARRS,MEQAPEDQGPQREPYNEWALELLEELKREAVRHFPREWLHSLGQHIYETYGDTWAGVGAIIRILQQLLFIHFRIGCHHSRIGILRRTRNGARRS*T,ATGGAACAAGCCCCGGAAGATCAAGGGCCACAGAGAGAGCCATACAATGAATGGGCACTAGAACTTTTAGAGGAGCTTAAGAGGGAAGCTGTTAGACATTTTCCTAGGGAATGGCTCCATAGCTTAGGACAACATATCTATGAAACTTATGGGGACACTTGGGCAGGAGTAGGAGCCATAATAAGAATACTGCAACAATTACTGTTTATTCATTTCAGAATTGGGTGTCACCATAGCAGGATAGGCATACTGAGGAGAACAAGAAATGGAGCCCGTAGATCCTAGACT +MK114705.1,tat_exon1,5578,5797,5830,6045,forward,0.5008944543828265,MEPVDPRLEPWKHPGSQPRTPCNNCYCKKCCFHCQVCFTKKGLGISYGRKKRRQRRGPPRDSQIHQVPLPKQ,MEPVDPRLEPWKHPGSQPRTPCNNCYCKKCCFHCQVCFTKKGLGISYGRKKRRQRRGPPRDSQIHQVPLPKQ*,ATGGAGCCCGTAGATCCTAGACTGGAACCCTGGAAGCATCCAGGAAGTCAGCCTAGGACTCCTTGTAACAATTGCTATTGTAAAAAGTGCTGCTTTCATTGCCAAGTTTGCTTCACAAAAAAGGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGCGACAGAGACGAGGACCTCCTCGAGACAGTCAGATTCATCAAGTTCCTCTACCAAAACAGTAA +MK114705.1,rev_exon1,5717,5798,5969,6045,forward,0.5825996892801657,MAGRSGDRDEDLLETVRFIKFLYQNSK,MAGRSGDRDEDLLETVRFIKFLYQNSK,ATGGCAGGAAGAAGCGGCGACAGAGACGAGGACCTCCTCGAGACAGTCAGATTCATCAAGTTCCTCTACCAAAACAGTAAG +MK114705.1,vpu,5809,6055,6061,6310,forward,0.5622524539349062,MQPLEISAIVALVVVAIIAIVVWTIVLLEYRKILRQKKIDRLINRISERAEDSGNESDGDQEELSALMEMGRLAPWNVDDL,MQPLEISAIVALVVVAIIAIVVWTIVLLEYRKILRQKKIDRLINRISERAEDSGNESDGDQEELSALMEMGRLAPWNVDDL*,ATGCAACCTTTAGAGATATCAGCAATAGTAGCATTAGTAGTAGTAGCAATAATAGCAATAGTTGTGTGGACCATAGTACTCTTAGAGTATAGGAAAATATTAAGGCAAAAGAAAATAGACAGATTAATTAATAGAATAAGTGAAAGAGCAGAAGACAGTGGCAATGAGAGTGACGGGGATCAAGAAGAATTGTCAGCTCTTATGGAGATGGGGCGCCTTGCTCCTTGGAATGTTGATGATCTGTAG +MK114705.1,env,5972,8549,6224,8795,forward,0.47723646106262685,MRVTGIKKNCQLLWRWGALLLGMLMICSATNMWVTVYYGVPVWKDATTTLFCASDAKAYDTEIHNVWATHACVPTDPDPQEVVLENVTENYNMGKNNMVEQMHEDIISLWDQSLKPCVLLTPFCVTLNCTDANITSTNNSRDKKEGESTLEETKGEIKNCSFNMTSSMSDKSQKQRALFYKLDVVQIDETNNNSYRLISCNTSVVTQACPKVSFDPIPIHYCAPAGFAILKCNNKKFNGTGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENFTNNAKTIIVQLKTPVQINCTRPNNNTRKRISMGPGRVIYATGQIIGDIRKAHCNISRAEWNTTLKQIVTQLRKQWNRTIIFNSSSGGDPEIVMHSFNCRGEFFYCNTTKLFNSTWPRNSTWNNTEGSNDTEIITLPCRIKQIVNRWQEVGKAMYAPPIQGQISCSSNITGLLLVRDGGINTSESNETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQREKRAVGMLGAMFLGLLGAAGSTMGAASVTLTVQTRLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARLLAVERYLQDQQLLGIWGCSGKLICTTTVPWNTSWSNRSYEDIWNNMTWMEWEKEIDNYTGLIYTLIEKSQNQQEINEQELLSLDKWASLWNWFNITNWLWYIKIFIMIVGGLIGLRIVFAVLSIVNRVRQGYSPLSLQTPRPAPRGPDRPEEIEEGGGERDRDRSVRLVTGFFALFWDDLRSLCLFSYHHLRDLILIVVRVVEILGRRGWEALKYWWNLLQYWSQEIKNSAISLLNATAIAVAEGTDRIIGVVQRTWRAFIHIPRRIRQGFERALL,MRVTGIKKNCQLLWRWGALLLGMLMICSATNMWVTVYYGVPVWKDATTTLFCASDAKAYDTEIHNVWATHACVPTDPDPQEVVLENVTENYNMGKNNMVEQMHEDIISLWDQSLKPCVLLTPFCVTLNCTDANITSTNNSRDKKEGESTLEETKGEIKNCSFNMTSSMSDKSQKQRALFYKLDVVQIDETNNNSYRLISCNTSVVTQACPKVSFDPIPIHYCAPAGFAILKCNNKKFNGTGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENFTNNAKTIIVQLKTPVQINCTRPNNNTRKRISMGPGRVIYATGQIIGDIRKAHCNISRAEWNTTLKQIVTQLRKQWNRTIIFNSSSGGDPEIVMHSFNCRGEFFYCNTTKLFNSTWPRNSTWNNTEGSNDTEIITLPCRIKQIVNRWQEVGKAMYAPPIQGQISCSSNITGLLLVRDGGINTSESNETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQREKRAVGMLGAMFLGLLGAAGSTMGAASVTLTVQTRLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARLLAVERYLQDQQLLGIWGCSGKLICTTTVPWNTSWSNRSYEDIWNNMTWMEWEKEIDNYTGLIYTLIEKSQNQQEINEQELLSLDKWASLWNWFNITNWLWYIKIFIMIVGGLIGLRIVFAVLSIVNRVRQGYSPLSLQTPRPAPRGPDRPEEIEEGGGERDRDRSVRLVTGFFALFWDDLRSLCLFSYHHLRDLILIVVRVVEILGRRGWEALKYWWNLLQYWSQEIKNSAISLLNATAIAVAEGTDRIIGVVQRTWRAFIHIPRRIRQGFERALL*,ATGAGAGTGACGGGGATCAAGAAGAATTGTCAGCTCTTATGGAGATGGGGCGCCTTGCTCCTTGGAATGTTGATGATCTGTAGTGCTACAAACATGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAAAGATGCAACCACCACTCTATTCTGTGCATCAGATGCTAAAGCATATGATACAGAGATACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCGACCCACAAGAAGTAGTACTGGAAAATGTGACAGAAAATTATAATATGGGAAAAAATAACATGGTGGAACAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGCCTAAAGCCATGTGTACTCTTAACCCCATTCTGTGTCACTTTAAATTGCACTGATGCTAACATCACCAGCACTAATAATAGTAGAGATAAGAAGGAAGGAGAAAGTACATTGGAGGAGACGAAAGGAGAAATAAAAAACTGCTCTTTCAATATGACTTCAAGCATGAGCGATAAGTCTCAGAAACAACGTGCACTTTTTTATAAGCTTGATGTGGTACAAATAGATGAGACTAATAATAATAGTTATAGGTTGATAAGTTGTAACACCTCAGTCGTCACACAGGCTTGTCCAAAGGTATCCTTTGATCCAATCCCTATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAATAATAAGAAATTCAATGGAACAGGACCATGTAAAAATGTCAGCACAGTACAATGTACACATGGAATTAAACCTGTAGTGTCAACCCAACTGCTGTTAAATGGTAGTCTAGCAGAAGAAGAAGTAATGATTAGATCTGAAAATTTCACGAACAATGCTAAAACCATAATAGTGCAGCTGAAGACACCTGTACAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGGATAAGTATGGGACCAGGGAGAGTAATTTATGCAACAGGACAAATAATAGGAGATATAAGAAAAGCACATTGCAACATTAGTAGAGCAGAATGGAATACAACTTTAAAGCAGATAGTTACACAATTAAGAAAGCAGTGGAATAGAACCATAATCTTTAACTCATCCTCAGGAGGGGACCCAGAAATTGTGATGCACAGTTTTAATTGTAGAGGGGAATTTTTCTACTGTAATACAACAAAACTATTTAATAGTACTTGGCCACGTAATAGTACTTGGAATAATACTGAAGGGTCAAATGACACTGAAATAATCACACTCCCGTGCAGAATAAAACAAATTGTAAACAGGTGGCAGGAAGTAGGCAAAGCAATGTATGCCCCTCCCATCCAAGGACAAATTAGTTGTTCATCAAATATTACAGGGCTGCTACTAGTTAGAGATGGTGGAATTAACACCAGTGAGAGCAACGAGACCTTCAGACCTGGAGGAGGAGATATGAGGGACAATTGGAGAAGTGAATTATATAAATATAAGGTAGTAAAAATTGAACCATTAGGAGTAGCACCCACCAAGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATGCTGGGAGCTATGTTCCTTGGGCTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGTTGACGGTACAGACCAGACTATTATTGTCTGGTATAGTGCAACAGCAGAACAATCTGCTGAGGGCTATTGAGGCGCAGCAGCATCTGTTGCAACTCACAGTCTGGGGCATCAAACAGCTCCAGGCAAGACTCCTAGCTGTGGAAAGATACCTACAGGATCAACAGCTCCTAGGGATTTGGGGTTGCTCTGGAAAACTCATCTGCACCACTACTGTGCCTTGGAACACTAGTTGGAGTAATAGATCTTATGAAGATATTTGGAACAACATGACCTGGATGGAGTGGGAAAAAGAAATTGACAATTACACAGGCTTAATATACACCTTAATTGAAAAATCGCAGAACCAGCAGGAAATAAATGAACAAGAACTATTGTCATTGGATAAGTGGGCAAGCCTGTGGAATTGGTTTAATATAACAAATTGGCTGTGGTATATAAAAATATTCATAATGATAGTAGGAGGCTTGATAGGTTTAAGAATAGTTTTTGCTGTACTTTCTATAGTGAATAGAGTTAGGCAGGGATACTCACCATTGTCATTGCAGACCCCCCGCCCAGCCCCAAGGGGACCCGACAGGCCCGAAGAAATCGAAGAAGGAGGTGGAGAAAGAGACAGAGACAGATCAGTGCGATTAGTGACTGGATTCTTCGCACTTTTCTGGGACGATCTACGAAGCCTGTGCCTCTTCAGCTACCACCACTTGAGAGACTTAATCTTGATTGTAGTGAGGGTTGTGGAAATTCTGGGACGCAGGGGGTGGGAAGCCCTCAAATATTGGTGGAATCTCCTGCAGTACTGGAGTCAGGAAATAAAGAATAGTGCTATCAGCTTGCTCAACGCCACAGCTATAGCAGTAGCTGAGGGGACAGATAGAATCATAGGAGTAGTACAAAGAACTTGGAGAGCTTTTATCCACATACCTAGGAGAATAAGACAGGGCTTTGAAAGGGCTTTGCTATAA +MK114705.1,tat_exon2,8130,8226,8376,8469,forward,0.610878661087866,RPPAQPQGDPTGPKKSKKEVEKETETDQCD,RPPAQPQGDPTGPKKSKKEVEKETETDQCD**,AGACCCCCCGCCCAGCCCCAAGGGGACCCGACAGGCCCGAAGAAATCGAAGAAGGAGGTGGAGAAAGAGACAGAGACAGATCAGTGCGATTAGTGA +MK114705.1,rev_exon2,8131,8407,8377,8653,forward,0.46983649689907914,DPPPSPKGTRQARRNRRRRWRKRQRQISAISDWILRTFLGRSTKPVPLQLPPLERLNLDCSEGCGNSGTQGVGSPQILVESPAVLESGNKE,DPPPSPKGTRQARRNRRRRWRKRQRQISAISDWILRTFLGRSTKPVPLQLPPLERLNLDCSEGCGNSGTQGVGSPQILVESPAVLESGNKE*,GACCCCCCGCCCAGCCCCAAGGGGACCCGACAGGCCCGAAGAAATCGAAGAAGGAGGTGGAGAAAGAGACAGAGACAGATCAGTGCGATTAGTGACTGGATTCTTCGCACTTTTCTGGGACGATCTACGAAGCCTGTGCCTCTTCAGCTACCACCACTTGAGAGACTTAATCTTGATTGTAGTGAGGGTTGTGGAAATTCTGGGACGCAGGGGGTGGGAAGCCCTCAAATATTGGTGGAATCTCCTGCAGTACTGGAGTCAGGAAATAAAGAATAG +MK114705.1,nef,8550,9138,8796,9417,forward,0.4255799939740875,MGGKWSKKSGGGWPAVREKMKRTEPAAEGVGAASRDLDKYGAITSSNTAQTNPDCAWLEAQEEEEVGFPVRPQVPLRPMTYKAAVDMSHFLKEKGGLEGLIHSQKRQDILDLWIYHTQGYFPDWQNYTPGPGVRYPLTFGGCFK,MGGKWSKKSGGGWPAVREKMKRTEPAAEGVGAASRDLDKYGAITSSNTAQTNPDCAWLEAQEEEEVGFPVRPQVPLRPMTYKAAVDMSHFLKEKGGLEGLIHSQKRQDILDLWIYHTQGYFPDWQNYTPGPGVRYPLTFGGCFK*CVPVCCVTLVTRDPSDHFSQRGKSLAVAPEQGPESESRTRGDLSTQDSAC*,ATGGGTGGAAAATGGTCAAAAAAGAGTGGGGGTGGATGGCCTGCTGTAAGGGAAAAAATGAAGCGAACTGAGCCAGCAGCAGAGGGGGTGGGAGCAGCATCTCGAGACCTGGACAAATATGGAGCAATCACAAGTAGCAATACAGCACAGACCAATCCTGATTGTGCCTGGCTAGAAGCACAAGAAGAGGAAGAGGTAGGCTTTCCAGTCAGACCCCAGGTACCTTTGAGACCAATGACTTACAAGGCAGCTGTGGATATGAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCACTCCCAAAAGAGACAAGATATCCTTGATCTGTGGATCTATCACACACAAGGCTACTTCCCTGATTGGCAAAATTACACACCAGGGCCAGGGGTCAGATATCCACTGACCTTTGGAGGGTGCTTCAAGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGGTAACTAGAGATCCCTCAGACCATTTTAGTCAGCGTGGAAAATCTCTAGCAGTGGCGCCCGAACAGGGACCTGAAAGCGAAAGTAGAACCAGAGGAGATCTCTCGACGCAGGACTCGGCTTGCTGA +MK114856.1,gag,120,2022,789,2292,forward,0.7511039743075072,MTKTLLVQNANPDCKTILKALGPAATLEEMMTACQKVRRPGHKAKVLAEAMSQATGAANIMMQRGNFKNQRKPVKCFNCGKEKHIAKNCKAPKKKGC,MLHISSCFLPVLGLSGWTRSEPGSSLAN*GTHCLSLNKACLECFK*CVPVCCVTLVTRDPSGSNLVQPERPSSSGARTGT*KRK*NQRRSLDAGLGLLKRARQEAKGGDW*VRHF*LAEARRRKIGARASVLSRGELDR*EKIQLRPRRKKKYRLKHIV*ASKELERFAVNPGLLETSGGCKQILEQLQPSLQTRSEELRSLYNTVATLYYVHQKIDVKDTKEALDKVEEEQNKSKKKAQQAAADTRNRGQTSQNFPIVQNLQGQIVHQAISPRTLNA*VKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVSRHQAAMQMLKKVINEEAAE*DRLHPVHARPIAPGQIREPKRSDIARTTSTLQEQIR*MTHNPPIPVRKIYKR*IILGLNKIVKMYSPTSILDIKQRPKEPFRDYVDQFYKTLRAKQATQKVKN*MTKTLLVQNANPDCKTILKALGPAATLEEMMTACQKVRRPGHKAKVLAEAMSQATGAANIMMQRGNFKNQRKPVKCFNCGKEKHIAKNCKAPKKKGC*KYRKERHQMKNCTKRQANFLKKIWPSHKGRPENFPQSRPEIPQSRPEPTAPPAPPEKSFKFEEATTPSQKQETIDKELYPLTSLRSLFGNDPSSQ*,ATGCTGCATATAAGCAGCTGCTTTCTGCCTGTACTGGGTCTCTCTGGTTGGACCAGATCTGAGCCTGGGAGCTCTCTGGCTAACTAGGGAACCCACTGCTTAAGCCTCAATAAAGCTTGCCTTGAGTGTTTCAAGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGGTAACTAGAGATCCCTCAGGCTCAAATCTGGTCCAACCAGAGAGACCCAGTAGCAGTGGCGCCCGAACAGGGACCTGAAAGCGAAAGTAGAACCAGAGAAGATCTCTCGACGCAGGACTCGGCTTGCTGAAGCGCGCACGGCAAGAGGCGAAAGGCGGCGACTGGTGAGTACGCCATTTTTGACTAGCAGAGGCTAGAAGGAGAAAGATAGGTGCGAGAGCGTCAGTATTGAGCAGAGGAGAATTAGATAGATAGGAGAAAATTCAGTTAAGGCCAAGGAGAAAGAAAAAATATAGATTAAAACATATAGTATAGGCAAGCAAGGAACTAGAACGATTCGCAGTTAATCCTGGCCTGTTAGAAACATCAGGAGGCTGTAAACAGATATTAGAACAGCTACAACCATCCCTTCAGACAAGATCAGAAGAACTTAGATCATTATATAATACAGTAGCCACCCTCTATTATGTACATCAAAAGATAGATGTAAAAGACACCAAAGAAGCGTTAGACAAAGTAGAAGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGCGGCAGCTGACACAAGAAACAGAGGCCAGACCAGTCAAAATTTCCCTATAGTGCAGAACCTACAAGGGCAAATAGTACATCAGGCCATATCACCTAGAACTTTAAATGCATAAGTAAAAGTAGTAGAAGAAAAAGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACTATGCTAAACACAGTAAGTAGACACCAAGCAGCTATGCAAATGTTAAAAAAGGTCATCAATGAAGAAGCTGCAGAATAAGATAGATTACATCCAGTGCATGCAAGGCCTATTGCACCAGGCCAGATAAGAGAACCAAAAAGAAGTGACATAGCAAGAACTACTAGTACCCTTCAGGAACAAATAAGATAGATGACACATAATCCACCTATCCCAGTAAGAAAGATTTATAAAAGATAAATAATTCTAGGACTAAATAAAATAGTAAAAATGTATAGCCCTACCAGCATTTTAGACATAAAGCAAAGGCCAAAAGAACCCTTTAGAGACTATGTAGACCAGTTCTATAAAACTTTAAGAGCCAAGCAAGCTACACAGAAAGTAAAAAATTAGATGACAAAAACCTTGTTAGTCCAGAATGCAAATCCAGATTGTAAAACTATTTTAAAAGCATTAGGACCAGCAGCTACACTAGAAGAAATGATGACAGCATGTCAAAAAGTAAGAAGACCCGGCCATAAAGCAAAAGTTTTAGCTGAAGCAATGAGCCAAGCAACAGGTGCAGCCAACATAATGATGCAGAGAGGCAATTTTAAGAACCAAAGAAAGCCTGTTAAATGTTTCAATTGTGGCAAAGAAAAGCACATAGCCAAAAATTGCAAGGCCCCTAAGAAAAAAGGCTGTTAGAAATATAGAAAAGAAAGACACCAAATGAAAAATTGCACTAAGAGACAGGCTAATTTTTTAAAGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGAGAACTTTCCTCAAAGCCGACCAGAAATTCCTCAGAGCAGACCAGAGCCAACAGCCCCACCAGCCCCTCCAGAAAAGAGCTTCAAGTTTGAAGAAGCAACAACTCCCTCTCAGAAGCAGGAGACAATAGACAAGGAGCTGTATCCTCTAACTTCCCTCAGATCACTCTTTGGCAACGACCCATCGTCACAATAA +MK114856.1,pol,1787,4892,2084,5096,forward,0.7637184348711559,ASQIYAKIKVKQLCKLLKRTKALTEVVPLTEEAELELAENRKILKDPVHRAYYDPAKDLIAELQKQREGQWTYQIYQKPFKNLKTEKYARTKGAHTNDVKQLTEAVQKISTESIVI,FFKENLAFPQRKARELSSKPTRNSSEQTRANSPTSPSRKELQV*RSNNSLSEAGDNRQGAVSSNFPQITLWQRPIVTIKIREQLKKALLNTGADDTVLEDIDLPRK*KPKMIRRIRSFIKVRQYEQVPIEISRHKAISTVLVGPTPVNIIRRNLLTQLSCTLNFPISPIETVPVKLKPRMDGPKVKQ*PLTEEKIKALVEICTEIEKEKKISKIRPENPYNTPVFAIKKKDGTK*KKLVDFRELNKKTQDF*EIQLSIPHPAKLKKKKSVTVLDVGDAYFSVPLDKDFKKYTAFTIPSINNETPKIRYQYNVLPQR*KRSPAIFQSSMTKILEPFRKTNPDIVIYQYIDDLYVRSDLEIRQHRTKVKELRQHLMR*RFTTPDKKHQKEPPFL*MRYELHPDKWTVQPIVLPEKES*TVNDIQKLVRKLN*ASQIYAKIKVKQLCKLLKRTKALTEVVPLTEEAELELAENRKILKDPVHRAYYDPAKDLIAELQKQREGQWTYQIYQKPFKNLKTEKYARTKGAHTNDVKQLTEAVQKISTESIVI*RRTPKFRLPIQKET*ET*WTDYWQAT*IPK*EFVNTPPLVKL*YQLEKEPIIRAETFYVDKAANKDNKSRKARYVTDRRRQKVVTINDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALKIIQAQPDKSESELVSQIIEQLIKKKKVYLA*VPAHKRIKRNEQVNKLVSARIKKVLFLDKIEKAQEDHKKYHSN*RTMASNFNLPPIVAKEIVASCDKCQLKKEAMHRQVDCSPGIWQLDCTHLEEKIILVAVHVASRYIEAEVIPAETRQETAYFILKLARRWPVKTIHTDNGRNFTSNTVKAAC**AKIKQEFSIPYNPQSQEVVKSINNELKKIIRQVKDQAKHLKTAVQMAVFIHNFKRKGGIEGYSAEERIVDIIATEIQTKELQKQITKIQNFQVYYKDSRDPL*KGPAKLLWKGEKAVVIQDNSDIKVVPRRKAKIIKDYKKQMASDDCVASRQDED*NMEKFSKIPYVYFKESQEIGL*,TTTTTTAAAGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGAGAACTTTCCTCAAAGCCGACCAGAAATTCCTCAGAGCAGACCAGAGCCAACAGCCCCACCAGCCCCTCCAGAAAAGAGCTTCAAGTTTGAAGAAGCAACAACTCCCTCTCAGAAGCAGGAGACAATAGACAAGGAGCTGTATCCTCTAACTTCCCTCAGATCACTCTTTGGCAACGACCCATCGTCACAATAAAGATAAGAGAGCAACTAAAGAAAGCTTTATTAAATACAGGAGCAGATGATACAGTATTAGAAGACATAGATTTGCCAAGAAAATAGAAACCAAAAATGATAAGAAGAATTAGAAGTTTTATCAAAGTAAGACAATATGAACAGGTACCCATAGAAATTAGCAGACACAAAGCTATAAGTACAGTGTTAGTAGGACCTACACCTGTCAACATAATTAGAAGAAATCTGTTGACTCAGCTTAGTTGCACTCTAAATTTTCCCATCAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAAGAATGGACGGCCCAAAAGTTAAACAATAGCCATTAACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATAGAAAAAGAAAAGAAAATTTCAAAAATTAGGCCTGAAAATCCATACAATACTCCAGTGTTTGCCATAAAGAAAAAAGATGGCACTAAATAGAAAAAATTAGTAGATTTCAGAGAACTTAATAAGAAAACTCAAGATTTCTAAGAAATTCAATTAAGTATACCACATCCTGCAAAGCTAAAAAAGAAAAAATCAGTCACAGTACTAGATGTAGGTGATGCATATTTTTCAGTTCCCTTAGATAAAGACTTCAAGAAATATACTGCATTTACCATACCTAGTATAAACAATGAGACACCAAAGATTAGATATCAGTATAATGTGCTTCCACAAAGATAGAAAAGATCACCAGCAATATTCCAAAGTAGCATGACAAAGATCCTAGAGCCTTTTAGAAAGACAAATCCAGACATAGTTATCTATCAATACATAGATGATTTGTATGTAAGATCTGACTTAGAAATAAGGCAACATAGAACAAAAGTAAAGGAACTGAGGCAACATCTAATGAGGTAAAGATTTACCACACCAGACAAAAAGCACCAGAAAGAACCCCCATTCCTTTAGATGAGGTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTACTGCCAGAAAAAGAAAGTTAGACTGTCAATGACATACAGAAGTTAGTAAGAAAATTGAATTAGGCAAGTCAGATTTATGCAAAGATTAAAGTGAAGCAATTATGTAAGCTCCTTAAAAGAACCAAAGCATTAACAGAAGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGAAAGATTCTAAAAGATCCAGTACATAGAGCATATTATGACCCAGCAAAGGACTTAATAGCAGAACTACAGAAGCAAAGAGAAGGTCAGTGGACATATCAAATTTATCAAAAGCCATTTAAAAATCTAAAAACAGAGAAATATGCAAGAACGAAAGGTGCCCATACTAATGATGTAAAGCAATTAACAGAAGCAGTGCAAAAAATATCCACAGAAAGTATAGTAATATAAAGAAGGACTCCTAAATTTAGATTACCCATACAAAAAGAAACATAAGAAACATAGTGGACAGATTATTGGCAAGCCACCTAGATCCCTAAGTAAGAGTTTGTCAACACCCCTCCCTTAGTGAAATTATAGTACCAGTTAGAAAAAGAACCCATAATAAGAGCAGAAACCTTCTATGTAGATAAGGCAGCTAATAAAGATAATAAATCAAGAAAAGCAAGATATGTTACTGACAGAAGAAGACAAAAAGTTGTCACCATAAATGACACAACAAATCAGAAAACTGAATTACAAGCCATTCATCTAGCCTTGCAAGATTCAGGGCTAGAAGTAAACATAGTAACAGACTCACAGTATGCATTAAAGATCATTCAAGCACAACCAGATAAAAGTGAATCAGAGTTAGTCAGTCAAATAATAGAACAGTTAATAAAAAAGAAAAAAGTCTACCTGGCATAAGTGCCAGCCCACAAAAGAATTAAAAGAAATGAACAGGTAAATAAACTAGTCAGTGCTAGAATCAAGAAAGTACTATTTTTAGATAAAATAGAAAAAGCCCAAGAAGACCATAAAAAATATCACAGTAATTAAAGAACAATGGCTAGTAATTTTAACCTACCACCTATAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCTAAAAAAAGAAGCTATGCATAGGCAAGTAGACTGTAGTCCAGGTATATGGCAGCTAGATTGTACACATTTAGAAGAAAAAATTATCCTAGTAGCAGTTCATGTAGCCAGTAGATATATAGAAGCAGAAGTGATTCCAGCAGAGACAAGGCAAGAAACAGCATACTTTATTTTAAAACTAGCAAGAAGATGGCCAGTAAAAACAATACATACAGACAATGGCCGCAATTTCACCAGTAATACAGTGAAGGCCGCCTGTTAGTAGGCAAAAATCAAGCAAGAATTTAGTATTCCCTACAATCCCCAAAGTCAAGAAGTAGTAAAATCTATAAATAATGAATTAAAGAAAATTATAAGACAAGTAAAAGATCAGGCTAAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGAAGGATACAGTGCAGAGGAAAGAATAGTAGACATAATAGCAACAGAAATACAGACTAAAGAATTACAAAAACAAATTACAAAAATTCAAAATTTTCAGGTTTATTACAAGGACAGCAGAGATCCACTTTAGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAAAGGCAGTAGTAATACAAGATAACAGTGACATAAAAGTAGTGCCAAGAAGAAAAGCAAAAATCATTAAGGATTATAAAAAACAGATGGCAAGTGATGATTGTGTGGCAAGTAGACAGGATGAAGATTAGAACATGGAAAAGTTTAGTAAAATACCATATGTATATTTCAAAGAAAGCCAAGAAATAGGCTTATAG +MK114856.1,vif,4791,5349,5040,5619,forward,0.7566838361540349,MIVWQVDRMKIRTWKSLVKYHMYISKKAKK,MIVWQVDRMKIRTWKSLVKYHMYISKKAKK*AYRHHYETTHPRISSEVHIPLGGARLVITTY*GLHTGEKDWHLGQGVSIEWRKRRYSTQVDPDLADHLIHVHYFDCFSESAIRNAILGHRVSPRCEYQAGHNKVRSLQYLALTALITPKKIKPPLPSVKKLTEDR*NKPQKTKGHRKSHTMNRH*,ATGATTGTGTGGCAAGTAGACAGGATGAAGATTAGAACATGGAAAAGTTTAGTAAAATACCATATGTATATTTCAAAGAAAGCCAAGAAATAGGCTTATAGACACCATTACGAAACCACTCATCCAAGAATAAGTTCAGAAGTACATATCCCACTAGGAGGTGCTAGATTAGTAATAACAACATATTAAGGTCTGCATACAGGAGAAAAAGACTGGCATTTAGGCCAGGGAGTCTCCATAGAATGGAGAAAAAGGAGATATAGCACACAAGTAGACCCTGACTTAGCAGACCATCTAATTCATGTGCATTATTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACATAGAGTTAGCCCTAGGTGTGAATATCAAGCAGGACATAACAAAGTAAGATCTCTACAATACTTGGCACTAACAGCATTAATAACACCAAAGAAGATAAAGCCACCTTTGCCTAGTGTAAAGAAACTGACAGAAGATAGATAGAACAAGCCCCAGAAGACCAAAGGCCACAGAAAGAGCCATACAATGAATAGACACTAG +MK114856.1,vpr,5033,5582,5558,5850,forward,0.7680130480667754,MLFIHFRIKCHHSRIGIVLQRRARNRASRS,MEKKEI*HTSRP*LSRPSNSCALF*LFFRICYKKCHIRT*S*P*V*ISSRT*QSKISTILGTNSINNTKEDKATFA*CKETDRR*IEQAPEDQRPQKEPYNE*TLELLEELKREAVRHFPRPWLQNLRQYIYETYKDTWTRVEAIIRILQQMLFIHFRIKCHHSRIGIVLQRRARNRASRS*T,ATGGAGAAAAAGGAGATATAGCACACAAGTAGACCCTGACTTAGCAGACCATCTAATTCATGTGCATTATTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACATAGAGTTAGCCCTAGGTGTGAATATCAAGCAGGACATAACAAAGTAAGATCTCTACAATACTTGGCACTAACAGCATTAATAACACCAAAGAAGATAAAGCCACCTTTGCCTAGTGTAAAGAAACTGACAGAAGATAGATAGAACAAGCCCCAGAAGACCAAAGGCCACAGAAAGAGCCATACAATGAATAGACACTAGAGCTTTTAGAAGAGCTTAAGAGAGAAGCTGTTAGACATTTCCCTAGACCATGGCTACAAAACCTAAGACAATATATCTATGAAACTTATAAAGATACTTGGACAAGAGTAGAAGCCATAATAAGAATTCTGCAACAAATGCTGTTTATTCATTTCAGAATTAAGTGTCACCATAGCAGAATAGGCATTGTTCTGCAAAGAAGAGCAAGAAATAGAGCCAGTAGATCATAGACT +MK114856.1,tat_exon1,5427,5775,5830,6045,forward,0.7728706624605679,MKLIKILGQE,MKLIKILGQE*KP**EFCNKCCLFISELSVTIAE*ALFCKEEQEIEPVDHRLEP*KHPGSQPRTPCTNCYCKKCCFHCQVCFIQKALGISYGRKKRRQRRRSPQDSQTHQVPLPKQ,ATGAAACTTATAAAGATACTTGGACAAGAGTAGAAGCCATAATAAGAATTCTGCAACAAATGCTGTTTATTCATTTCAGAATTAAGTGTCACCATAGCAGAATAGGCATTGTTCTGCAAAGAAGAGCAAGAAATAGAGCCAGTAGATCATAGACTAGAGCCCTAGAAGCATCCAGGAAGTCAGCCTAGGACTCCTTGTACCAATTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTGTGTTTTATACAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGAGACGAAGATCTCCTCAAGACAGTCAGACTCATCAAGTTCCTCTACCAAAGCAG +MK114856.1,rev_exon1,5698,5776,5969,6045,forward,0.5275498241500586,MAGRSGDRDEDLLKTVRLIKFLYQSS,MAGRSGDRDEDLLKTVRLIKFLYQSS,ATGGCAGGAAGAAGCGGAGACAGAGACGAAGATCTCCTCAAGACAGTCAGACTCATCAAGTTCCTCTACCAAAGCAGT +MK114856.1,vpu,5790,6039,6061,6310,forward,0.6919534658264663,TIVGIKYKKILRQRKIDRIINRIRKRAEDSGNESEKDQEELSALVVEIRHDAP,MQPLKILAIVALVVAAIIAIVV*TIVGIKYKKILRQRKIDRIINRIRKRAEDSGNESEKDQEELSALVVEIRHDAP*DVDDL*,ATGCAACCTTTAAAGATATTAGCAATAGTAGCATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTAGACCATAGTAGGCATAAAATATAAGAAAATATTAAGACAAAGAAAAATAGATAGAATAATTAATAGAATAAGAAAAAGAGCAGAAGACAGTGGCAATGAGAGCGAAAAAGATCAGGAAGAATTGTCAGCACTTGTAGTAGAAATAAGGCACGATGCTCCTTAAGATGTTGATGATCTGTAG +MK114856.1,env,5953,8557,6224,8795,forward,0.7529489530867413,MTNCSFNITTEIRDKVRKEYALFYKLDVMPIDKDNTSYTLINCNTSVITQACPKVTFEPIPIHYCTPASFAILKCKDEMFNRTRPCKNVSTVQCTHRIRPVVSTQLLLNSSLAEKKIVLRSENFTDNTKNIIVQLNRSIVINCTRPNNNTRKSISVAKRAIYATRQIIEDIRQAHCNISETD,MRAKKIRKNCQHL**K*GTMLLKMLMICSAAENL*VTVYYEVPV*RDANTTLFCASDAKAYDTEVHNV*ATHACVPTDPNPHEVELKNVTENFNM*KNNMVDQMHEDIINL*DQSLKPCAKLTPLCVTLNCTDLKNNTVGNQTNYHLNETNTIQRKEMTNCSFNITTEIRDKVRKEYALFYKLDVMPIDKDNTSYTLINCNTSVITQACPKVTFEPIPIHYCTPASFAILKCKDEMFNRTRPCKNVSTVQCTHRIRPVVSTQLLLNSSLAEKKIVLRSENFTDNTKNIIVQLNRSIVINCTRPNNNTRKSISVAKRAIYATRQIIEDIRQAHCNISETD*SDTLSKIVEKLKEKFRKNKTIIFKQSSREDIEIETHSFNCREEFFYCNTTRLFNST*SVNRTSINRTNNKNITLPCRIKQIINRWQEVRKAMYAPPISKIIRCSSNITGLILTRDSSTTNSKEETFRPRERNMKDN*RSELYKYKVVKIEPLKVAPTKAQRKVVQREKRAIRTLGAMFLRFLRTAGSTIGAASLTLTVQARQLLSGIVQQQNNLLKAIEAQQHMLQLTV*GIKQLQARVLSVERYLQDQQLLKI*SCSRKLICTTTVP*NTS*SNKSYSTI*DNMT*MQ*DREIQNYTKIIYNLLKESQIQQKKNEKELLELDQ*ANL*N*FSITKWL*YIKIFIMIVGGLVSLKIIFAVFSIVNRVRQGYSPLSLQTLLPTPRRPDRPERIEEEGEKRDRGRSRRLVTRFLPLI*DDLQSLCLFSYHHLKDLLLIVLKTVQILGHKK*EILKY**SLLQY*IQELKNSAVSLLNTIAIAVAERTDKVIEVRQKISRAFLHIPRKIRQGLEKALQ*NKWQVVKKLYG*,ATGAGAGCGAAAAAGATCAGGAAGAATTGTCAGCACTTGTAGTAGAAATAAGGCACGATGCTCCTTAAGATGTTGATGATCTGTAGTGCTGCGGAAAATTTGTAAGTCACAGTCTATTATGAGGTACCTGTGTAAAGAGATGCAAATACCACTCTATTCTGTGCATCAGATGCTAAAGCATATGATACAGAAGTACATAATGTTTAGGCCACACATGCCTGTGTACCCACAGACCCTAACCCACATGAAGTAGAATTGAAAAATGTGACAGAAAATTTTAATATGTAGAAAAATAACATGGTAGACCAGATGCATGAGGATATAATCAATTTATGAGATCAAAGCCTAAAGCCATGTGCAAAATTGACCCCACTCTGTGTTACTTTAAATTGCACTGATTTAAAAAATAATACTGTAGGAAATCAAACAAATTATCATCTCAATGAAACTAATACAATACAAAGAAAAGAAATGACAAACTGCTCTTTCAATATCACCACAGAGATAAGAGATAAAGTGCGAAAAGAATATGCACTTTTTTATAAACTTGATGTCATGCCAATAGATAAAGATAATACAAGTTATACATTGATAAATTGCAATACCTCAGTCATTACACAGGCCTGTCCAAAGGTAACCTTTGAACCAATTCCCATACATTATTGTACTCCAGCTAGTTTTGCAATTCTAAAGTGTAAAGATGAGATGTTCAATAGAACAAGACCATGTAAGAATGTCAGCACAGTACAATGTACACATAGAATTAGACCAGTAGTGTCAACTCAACTGCTGTTAAATAGTAGCCTAGCAGAAAAAAAGATAGTACTTAGATCTGAAAATTTCACAGACAATACTAAAAATATAATAGTACAGCTAAATAGATCTATAGTAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAGTGTAGCAAAGAGAGCAATTTATGCAACAAGACAGATAATAGAAGATATAAGACAAGCACATTGTAACATCAGTGAGACAGATTGAAGTGACACTTTAAGCAAAATAGTTGAAAAATTAAAGGAAAAATTTAGAAAAAATAAAACAATAATCTTTAAGCAATCATCAAGAGAGGACATAGAAATTGAAACGCACAGTTTTAATTGTAGAGAGGAATTTTTCTACTGTAACACAACACGACTGTTTAATAGTACTTGAAGTGTTAATAGAACTAGCATAAACAGAACTAACAATAAAAATATCACACTCCCGTGCAGAATAAAACAAATTATCAACAGGTGGCAGGAAGTAAGAAAAGCAATGTATGCCCCTCCTATCAGTAAGATAATTAGGTGCTCATCAAATATTACAGGACTAATATTAACAAGAGATAGTAGTACAACTAATAGTAAAGAAGAGACCTTCAGACCTAGAGAAAGAAATATGAAGGACAATTAGAGAAGTGAATTATATAAATACAAAGTAGTAAAAATTGAGCCATTAAAAGTAGCACCCACCAAGGCACAAAGAAAAGTAGTGCAGAGAGAAAAAAGAGCAATAAGAACGTTAGGAGCTATGTTCCTCAGGTTCTTAAGAACAGCAGGAAGCACTATAGGCGCAGCGTCACTGACGCTGACAGTACAAGCCAGACAATTATTGTCTGGTATAGTGCAACAGCAGAACAATCTGCTGAAGGCTATTGAGGCGCAACAGCATATGTTGCAACTCACAGTCTAAGGCATCAAACAGCTCCAGGCAAGAGTCCTGTCTGTAGAAAGATACCTACAAGATCAACAGCTCCTGAAGATTTGAAGTTGCTCTAGAAAACTCATTTGCACCACTACTGTGCCTTAGAATACTAGTTAGAGCAATAAATCTTACAGTACCATCTAAGATAACATGACCTAGATGCAGTAGGACAGAGAAATTCAAAATTACACAAAGATAATATACAACTTACTTAAAGAATCGCAAATCCAACAGAAAAAGAATGAAAAAGAATTATTAGAACTAGATCAATGAGCAAATTTGTAGAATTAGTTTAGTATAACAAAATGGCTATAGTATATAAAAATATTCATAATGATAGTAGGAGGCTTAGTAAGTTTAAAAATAATTTTTGCTGTATTTTCTATAGTGAATAGAGTTAGGCAAGGATACTCACCATTATCATTGCAGACCCTCCTCCCAACCCCAAGAAGACCAGACAGGCCCGAAAGAATAGAAGAAGAAGGTGAAAAGAGAGACAGAGGCAGATCCAGAAGATTAGTGACTAGATTCTTACCACTCATCTAAGACGACCTGCAAAGCCTGTGCCTTTTCAGCTACCACCACTTAAAAGACTTACTCTTGATTGTGCTGAAGACTGTGCAAATTCTAGGACACAAGAAGTAAGAGATCCTCAAGTACTAGTAGAGTCTCCTGCAGTATTAAATTCAGGAACTAAAGAATAGTGCTGTTAGCTTGCTCAATACCATAGCTATCGCAGTAGCTGAAAGAACAGATAAAGTTATAGAAGTAAGACAAAAAATTAGCAGAGCTTTTCTCCACATACCTAGAAAGATAAGACAAGGCTTAGAAAAGGCTTTGCAATAAAATAAGTGGCAAGTAGTCAAAAAGTTGTATGGCTAG +MK114856.1,tat_exon2,8102,8198,8376,8469,forward,0.5633802816901408,RPSSQPQEDQTGPKE,RPSSQPQEDQTGPKE*KKKVKRETEADPED**,AGACCCTCCTCCCAACCCCAAGAAGACCAGACAGGCCCGAAAGAATAGAAGAAGAAGGTGAAAAGAGAGACAGAGGCAGATCCAGAAGATTAGTGA +MK114856.1,rev_exon2,8103,8379,8377,8653,forward,0.6888374145157732,ILTTHLRRPAKPVPFQLPPLKRLTLDCAEDCANSRTQEVRDPQVLVESPAVLNSGTKE,DPPPNPKKTRQARKNRRRR*KERQRQIQKISD*ILTTHLRRPAKPVPFQLPPLKRLTLDCAEDCANSRTQEVRDPQVLVESPAVLNSGTKE*,GACCCTCCTCCCAACCCCAAGAAGACCAGACAGGCCCGAAAGAATAGAAGAAGAAGGTGAAAAGAGAGACAGAGGCAGATCCAGAAGATTAGTGACTAGATTCTTACCACTCATCTAAGACGACCTGCAAAGCCTGTGCCTTTTCAGCTACCACCACTTAAAAGACTTACTCTTGATTGTGCTGAAGACTGTGCAAATTCTAGGACACAAGAAGTAAGAGATCCTCAAGTACTAGTAGAGTCTCCTGCAGTATTAAATTCAGGAACTAAAGAATAG +MK114856.1,nef,8549,9176,8796,9417,forward,0.7670454545454546,MSLHRMEDSEGEVLMWKFDSSLAFHHRAREQHPEYYKDC,MAR*PAVKERIERVNPRPAAKKEQAEPAAAKVRAASRDLEKYRAITSSNTSTTNAACA*LEAQEEEEVGFPVRPQVPLRPMTYKAALNLSHFLKEKGGLEGLI*SQRRQEILDLWVYHTQGYFPDWQNYTPGPGVRNPLTFGWCFKLVPVDPDQVEKANEGENNCLLHPMSLHRMEDSEGEVLMWKFDSSLAFHHRAREQHPEYYKDC*,ATGGCTAGATAGCCTGCTGTAAAAGAAAGAATAGAAAGAGTTAATCCAAGGCCTGCTGCAAAGAAAGAACAAGCTGAGCCAGCAGCAGCTAAGGTAAGAGCAGCATCTCGAGACTTAGAAAAATATAGAGCAATCACAAGTAGCAATACATCAACTACTAATGCTGCTTGTGCCTAGCTAGAAGCACAAGAGGAAGAAGAAGTAGGCTTTCCAGTCAGACCTCAAGTACCTTTAAGACCAATGACTTACAAAGCAGCTTTAAATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTAGTCCCAGAGAAGACAAGAAATCCTTGATTTGTGGGTTTACCACACACAAGGATACTTCCCTGATTGGCAAAACTACACACCAGGACCAGGGGTCAGAAATCCACTGACCTTTGGATGGTGCTTCAAGCTAGTACCAGTTGATCCAGACCAAGTAGAGAAGGCCAATGAAGGAGAGAACAACTGCTTGCTACACCCTATGAGCCTGCATAGGATGGAAGACTCAGAGGGAGAAGTGTTAATGTGGAAGTTTGACAGCAGCCTGGCGTTTCATCATAGAGCCCGAGAACAACATCCGGAGTACTACAAAGACTGCTGA +MK115009.1,gag,302,1715,789,2292,forward,0.7484174646972894,MTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVRGPGHKARVLAEAMSQVTKSASIIVQGGNFKNQRKNVKCFNCGKERHTAKNCRAPKKKGC,MGARASVLSGGKLDR*EKIYLRPEGKKKYRLKHIV*ASRELERFAVNPGLLESSEGCRQILGQLQPALQTGSEELRSLYNTVAVLYCVHQRINVKDTKEALDKIEEEQNKSKKKAQQAAADTGNSSNSQVSQNYPIVQNLQGQIVHQPLSPRTLNA*VKVIEEKAFSPEVIPMFSALSERATPQDLNTMLNTVRGHQAAMQMLKETINDEAAE*DRLHPVHAGPIAPGQMKEPRGSDIAGTTSTLQEQIR*MTHNPPIPVGEIYKRWIILRLNKIVRMYSPVSILDIRQRPKEPFKDYVDRFYKTLKAEQASQDVKN*MTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVRGPGHKARVLAEAMSQVTKSASIIVQGGNFKNQRKNVKCFNCGKERHTAKNCRAPKKKGC*KCRKERHQMKDCTKRPD*DG*FFKEDLAFPQGKAREFSPEQTRANSPASRELQV*,ATGGGTGCTAGAGCGTCAGTATTAAGCGGCGGAAAATTAGATAGATAGGAAAAAATTTACCTAAGGCCAGAAGGAAAGAAAAAATATAGATTAAAACATATAGTATAGGCAAGCAGGGAGCTAGAACGATTCGCAGTCAACCCTGGCCTGTTAGAGTCATCAGAAGGCTGCAGGCAAATTCTAGGACAGCTACAACCAGCCCTTCAGACAGGATCAGAAGAACTTAGATCATTATATAATACAGTAGCAGTCCTCTATTGCGTACATCAAAGGATAAATGTAAAAGACACCAAGGAAGCTCTAGACAAAATAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAACAAGCAGCAGCTGACACAGGAAACAGCAGCAACAGCCAGGTCAGCCAAAATTACCCTATAGTGCAGAACCTACAGGGGCAAATAGTACATCAACCATTATCACCTAGAACTTTAAATGCATAGGTAAAAGTAATAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCACTATCAGAAAGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGAGAGGACATCAAGCAGCCATGCAGATGTTAAAAGAAACCATCAATGATGAGGCTGCAGAATAGGATAGATTGCATCCAGTGCATGCAGGCCCTATTGCACCAGGCCAGATGAAAGAACCAAGAGGAAGTGACATAGCAGGAACCACTAGTACCCTTCAGGAACAAATAAGATAGATGACACATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCCTAAGGCTAAACAAAATAGTAAGAATGTATAGCCCTGTCAGCATTTTGGACATAAGACAAAGACCAAAAGAACCCTTTAAAGATTATGTAGACCGATTCTATAAAACTCTAAAGGCTGAGCAAGCGTCACAGGATGTAAAAAATTAGATGACAGAAACCTTGTTAGTCCAAAATGCGAATCCAGATTGTAAGACCATTTTAAAAGCATTAGGACCAGCAGCTACATTAGAAGAAATGATGACAGCATGTCAGGGAGTAAGAGGACCCGGCCACAAGGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAACAAAGTCAGCCTCCATAATAGTGCAAGGAGGCAATTTTAAGAACCAAAGAAAGAATGTTAAGTGTTTCAATTGTGGCAAAGAAAGACACACAGCCAAAAATTGCAGGGCCCCTAAGAAAAAAGGCTGTTAAAAATGTAGAAAGGAAAGACACCAAATGAAAGATTGTACTAAGAGACCAGACTAAGACGGCTAATTTTTTAAGGAAGATTTGGCCTTCCCACAAGGGAAGGCCAGAGAATTTTCTCCAGAGCAGACCAGAGCCAACAGCCCCGCCAGCAGAGAGCTTCAGGTTTGA +MK115009.1,pol,1613,4703,2084,5096,forward,0.7535099054247956,AEIKQEFSIPYNPQSQRVVKSMNNKLKKIIGQVKDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFQVYYRDSREPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKILRDYRKQMAGDDCVASRQDED,FFKEDLAFPQGKAREFSPEQTRANSPASRELQV*GRGNSSSSEAGDERPRTVSFSFPQITLWQRPIISIKIGGQLKEALLDTGADDTVLEEINLPGK*KPKMIKRIRSFIKVRQYDQVPIEICGHKAIGTVLIGPTPVNIIRRNLLTQLSCTLNFPISPIETVPVKLKSGIDSPRVKQWPLTEEKIKALIEICAEIEKEKKITKIRPENPYNTPVFAIKKKDSTK*KKLVDFRELNKRTQDF*EVQLRIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNEAPEVKYQYNVLPQR*KRSPAIFQSSMTKILEPFRKENPDIVIYQYIDDLYVRSDLEIEQHRTKIEELRQHLLR*GLTTPDKKHQKKPPFL*ISYELHPDK*TVQPIQLPDKDS*TVNDIQKLVRKLN*ASQIYPEIKVKQLCKLLRGTKALTEVVPLTEEAELELAENREILKEPVHGAYYDPSKDLIAEVQKQRRDQ*TYQIYQEPFKNLKTEKYARTRGAHTNDVKQLTEAVQKIALEAIVI*RKTPKFKLPIQKET*KMWWTKYWQAT*IPE*EFVNTPPLVKL*YQLEKEPIVRAETFYVNKAANRKTKLRKAEYVTDRRRQKVVSLIDTTNQRTKLHAIHLALQDSGSTVNIVTDSQYALKIIQAQPDKSESELVSQIIEQLIKKEKIYLA*VPAHKRIEGNEQVDKLVSNRIRRVLFLDRIDKAQEEHEKYHSN*RAMASNFNLPPVVAKEIVASCDKCQLKGEPMHRQVDCSPGIWQLDCTHLERKIILVAVHVASRYIEAEVIAAETGQETAYFILKLAGR*PVKIIHTDNGSNFTSTTVKAAC**AEIKQEFSIPYNPQSQRVVKSMNNKLKKIIGQVKDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFQVYYRDSREPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKILRDYRKQMAGDDCVASRQDED*NIEQFSKTPYAYFKESSEIGLQTSL*,TTTTTTAAGGAAGATTTGGCCTTCCCACAAGGGAAGGCCAGAGAATTTTCTCCAGAGCAGACCAGAGCCAACAGCCCCGCCAGCAGAGAGCTTCAGGTTTGAGGAAGAGGCAACAGCTCCTCCTCAGAAGCAGGAGACGAAAGACCAAGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCATAATATCAATAAAAATAGGAGGGCAACTAAAAGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATAAATTTGCCAGGAAAATAGAAACCAAAAATGATAAAAAGAATTAGAAGTTTTATCAAAGTAAGACAGTATGATCAGGTACCCATAGAAATTTGTGGACATAAAGCTATAGGTACAGTATTAATAGGACCTACGCCAGTCAACATAATTAGAAGAAATCTGTTGACCCAGCTTAGTTGCACTTTAAATTTTCCCATCAGTCCTATTGAAACTGTACCAGTAAAATTAAAGTCAGGAATAGATAGCCCAAGAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAGGCATTAATAGAAATTTGTGCAGAAATAGAAAAGGAAAAGAAAATTACAAAAATTAGGCCTGAGAATCCATATAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGAAAAAAATTAGTAGATTTCCGAGAACTTAATAAGAGAACACAAGACTTCTAAGAAGTTCAACTAAGAATACCACATCCCGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTAGATGTAGGTGATGCATATTTTTCAGTTCCTTTAGACAAAGACTTCAGAAAGTATACTGCATTTACCATACCCAGTATAAACAATGAGGCACCAGAAGTTAAATATCAGTACAATGTGCTTCCACAGAGATAGAAAAGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGGAAAATCCAGACATAGTTATCTATCAATACATAGATGATTTGTATGTAAGATCTGACTTAGAAATAGAGCAGCACAGAACAAAAATAGAAGAACTGAGACAACATCTGTTAAGGTGAGGACTCACCACACCAGACAAGAAACATCAGAAAAAACCTCCATTTCTTTAGATAAGTTATGAACTCCATCCTGATAAATAGACAGTACAGCCTATACAGCTGCCAGACAAAGACAGCTAGACTGTCAATGACATACAGAAGTTAGTAAGAAAGTTGAATTAGGCAAGCCAGATCTATCCAGAGATTAAAGTAAAGCAATTATGTAAACTCCTTAGAGGAACCAAAGCACTAACAGAAGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGAGAGATTCTAAAAGAACCAGTACATGGAGCATATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGAGGAGAGACCAATAGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGAGAAATATGCAAGAACGAGAGGTGCCCACACTAATGATGTAAAACAGTTAACAGAGGCAGTGCAAAAAATAGCCCTAGAAGCCATAGTAATATGAAGAAAGACTCCTAAATTTAAACTACCTATACAAAAAGAAACATAGAAAATGTGGTGGACAAAGTATTGGCAAGCCACCTAGATTCCTGAGTAAGAATTTGTCAATACCCCTCCCTTAGTAAAACTATAGTACCAGTTAGAGAAAGAACCCATAGTAAGAGCAGAAACTTTCTATGTAAATAAGGCAGCTAATAGAAAGACTAAATTAAGAAAAGCAGAGTATGTTACGGACAGAAGAAGACAAAAGGTTGTCTCCCTAATAGACACAACAAATCAGAGGACTAAGTTACACGCAATTCATCTAGCTTTGCAGGATTCAGGATCAACAGTAAACATAGTGACAGACTCACAATATGCCTTAAAGATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAGTCAAATAATAGAGCAGCTAATAAAAAAAGAAAAGATTTACCTGGCATAAGTCCCAGCACACAAAAGAATTGAAGGAAATGAACAAGTAGATAAATTAGTCAGTAATAGAATCAGAAGAGTACTATTTCTAGATAGAATAGATAAAGCCCAAGAAGAACATGAAAAATATCACAGTAATTAGAGAGCAATGGCTAGTAATTTTAACCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAGTGTCAGTTAAAAGGAGAACCTATGCATAGACAAGTAGACTGTAGTCCAGGAATATGGCAACTAGATTGTACACATTTAGAAAGAAAAATTATCCTAGTAGCAGTTCATGTAGCCAGTAGATACATAGAAGCAGAAGTTATTGCAGCAGAAACAGGGCAGGAAACAGCATACTTTATCTTAAAATTAGCAGGAAGATAGCCAGTAAAAATAATACATACAGACAATGGCAGCAATTTCACCAGCACTACAGTTAAAGCCGCCTGTTAGTAGGCAGAGATCAAGCAGGAATTTAGTATTCCCTACAATCCTCAAAGTCAAAGAGTAGTAAAATCTATGAATAATAAATTAAAGAAAATTATAGGACAGGTAAAAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATTCATAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAATAGACATAATAGCAACAGACATACAAACTAAAGAACTACAAAAACAAATTTCAAAAATTCAAAATTTTCAGGTTTATTACAGGGACAGCAGAGAACCACTTTGGAAAGGACCAGCAAAGCTCCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATCCTTAGAGATTATAGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATAGAACAGTTTAGTAAAACACCATATGCATATTTCAAAGAAAGCTCAGAGATAGGTTTACAGACATCACTATGA +MK115009.1,vif,4590,5148,5040,5619,forward,0.7690516839981375,MIVWQVDRMRIRT,MIVWQVDRMRIRT*NSLVKHHMHISKKAQR*VYRHHYESHNPKTSSEVHIPLEEARLVIKTY*GLHTGERDWHLGQGVSIEWRKRRYSTQVDPGLADQLIHLYYFDCFSESAIRNAILGHRVSPRCEYQAGHNKVGSLQYLALTALITPKRRKPPLPSVTKLTEDRWNKSQRTKGHKRSHTINGH*,ATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATAGAACAGTTTAGTAAAACACCATATGCATATTTCAAAGAAAGCTCAGAGATAGGTTTACAGACATCACTATGAAAGCCATAATCCAAAAACAAGTTCAGAAGTACACATCCCATTAGAGGAAGCAAGATTGGTAATAAAAACATATTAAGGTCTGCATACAGGAGAAAGAGACTGGCATTTAGGCCAGGGAGTATCCATAGAATGGAGGAAAAGGAGATATAGCACACAAGTAGACCCTGGCCTGGCAGACCAACTAATTCACCTGTATTATTTTGATTGTTTTTCAGAATCTGCTATAAGGAATGCCATATTAGGACATAGAGTTAGTCCTAGGTGTGAATATCAGGCAGGACATAACAAGGTAGGATCCCTACAATACTTGGCATTAACAGCATTAATAACACCAAAAAGGAGAAAGCCACCTTTGCCCAGTGTTACAAAATTAACAGAGGACAGATGGAACAAGTCCCAGAGGACCAAAGGCCACAAAAGGAGCCATACAATAAATGGACATTAG +MK115009.1,vpr,5087,5381,5558,5850,forward,0.6326902627981166,MEQVPEDQRPQKEPYNKWTLELLEELKSEAVRHFPRPWLHSLGQYIYETYGDT,MEQVPEDQRPQKEPYNKWTLELLEELKSEAVRHFPRPWLHSLGQYIYETYGDT*AEVEAIIRTLQQLLFIHFRIRCQHSRIGIIRQRRARNRASRS*L,ATGGAACAAGTCCCAGAGGACCAAAGGCCACAAAAGGAGCCATACAATAAATGGACATTAGAGCTCTTAGAAGAGCTTAAGAGTGAAGCTGTTAGGCATTTTCCTAGACCATGGCTTCATAGCTTAGGACAATATATCTATGAAACTTATGGAGATACTTAGGCAGAGGTAGAAGCCATAATAAGAACCCTGCAACAACTGTTGTTCATTCATTTCAGAATTAGGTGTCAACATAGCAGGATAGGAATTATTCGACAGAGGAGAGCAAGAAATAGAGCCAGTAGATCCTAGCTT +MK115009.1,tat_exon1,5412,5574,5830,6045,forward,0.6386595434677027,MTACNNCYCKRCCFHCQVCFTTKSLGISYGRKKQRQRRRASHSSQNHQAALPEQ,MTACNNCYCKRCCFHCQVCFTTKSLGISYGRKKQRQRRRASHSSQNHQAALPEQ,ATGACTGCTTGTAACAATTGCTATTGTAAACGGTGTTGCTTTCATTGCCAAGTTTGCTTCACAACAAAAAGCTTAGGCATCTCCTATGGCAGGAAGAAGCAGAGACAGCGACGAAGAGCTTCTCACAGCAGTCAGAATCATCAAGCGGCTCTACCAGAGCAG +MK115009.1,rev_exon1,5497,5575,5969,6045,forward,0.5537098560354374,MAGRSRDSDEELLTAVRIIKRLYQSS,MAGRSRDSDEELLTAVRIIKRLYQSS,ATGGCAGGAAGAAGCAGAGACAGCGACGAAGAGCTTCTCACAGCAGTCAGAATCATCAAGCGGCTCTACCAGAGCAGT +MK115009.1,vpu,5589,5835,6061,6310,forward,0.6167068757539205,MHALEIAAIAGLVVAAIIAIVVWSIVLIEYKKILRQRKIDRLINRIRERAEDSGNESDEDQEELSALVEMRHLVP,MHALEIAAIAGLVVAAIIAIVVWSIVLIEYKKILRQRKIDRLINRIRERAEDSGNESDEDQEELSALVEMRHLVP*DSNDM*,ATGCATGCCTTAGAAATAGCAGCAATAGCAGGATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGTCTATAGTATTAATAGAATATAAGAAAATTTTAAGACAAAGGAAAATAGACAGGTTAATTAATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGACGAGGACCAAGAGGAATTATCCGCACTTGTGGAGATGAGGCATCTTGTTCCTTAAGATAGTAATGATATGTAG +MK115009.1,env,5752,8353,6224,8795,forward,0.7518167619083244,MKEKGEIKNCSFNVTTGIRDKVTKEHALFYKLNVVPIDEDSKNTTGKYKMINCNTSVITQACPKVSFKPIPIHFCAPASFAILKCKDKKFNRTGECRNVSTVQCTHRIRPVVSTQLLLNGSLAEEKIVIRSANLSNNAKTIIVQLNKSVKINCTRPNNNTRRSIHIGPGRAFYRTDIIRDIRQAHYNISKKD,MRVTRTKRNYPHLWR*GILFLKIVMICSANNL*VTVYYKVPV*KEATTTLFCASDAKAYETEKHNV*ATHACVPTDPSPQEVALENVTETFNM*KNDMVEQMHEDIISL*DQSLKPCVKLTPLCVTLNCTDNLNLTCPNNNTCSNNTNYNMKEKGEIKNCSFNVTTGIRDKVTKEHALFYKLNVVPIDEDSKNTTGKYKMINCNTSVITQACPKVSFKPIPIHFCAPASFAILKCKDKKFNRTGECRNVSTVQCTHRIRPVVSTQLLLNGSLAEEKIVIRSANLSNNAKTIIVQLNKSVKINCTRPNNNTRRSIHIGPGRAFYRTDIIRDIRQAHYNISKKD*NDTLKQIVIKLKEKFKNKTIVFTQSSGEDPEIVMHSFNCREEFFYCNTTQLFNST*NNST*NSTDN*NSTESNSTITLPCRIKQIINLWQEVRRAMYAPPIQRQIRCSSNITGLLLVRDGRSNNSSNDTETFRPRGRDMKDN*RSKLYKYKVVKIKPLRIAPTHAKRRVVQKEKRAIRLEAFFLRFLRAAGSTIGAASVTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTV*GIKQLQAKVLALERYLKDQQLLRI*SCSGKLICTTNVPWNISWSPRWNRSLDKI*TNMT*KQ*EKEIDNYTDIIYNLIEQSQNQQEQNEQDLLALDK*ASL*N*FDITQ*L*YIKIFIIIVRGLISLRIVFTILSIVNKVRQGYSPLSLQTLLPTQRGPDRPERTEERGRKKDRGTSTRLVHRFLALI*DDLRSLFLFSYHRLKDLLLIAARIVELLGRRK*EALKY**NLLQY*SQEIKNSAVSLLNTTAIAVAERTDKIIEVLQRGFRAILHIPTRIRQGLEKALL*,ATGAGAGTGACGAGGACCAAGAGGAATTATCCGCACTTGTGGAGATGAGGCATCTTGTTCCTTAAGATAGTAATGATATGTAGTGCCAACAACTTGTAGGTCACAGTCTATTATAAAGTACCTGTATAGAAAGAAGCAACTACCACTCTATTTTGTGCATCAGATGCTAAAGCATATGAGACAGAGAAGCATAATGTTTAGGCAACCCATGCCTGTGTACCCACAGACCCCAGCCCACAGGAAGTAGCATTAGAAAATGTGACAGAAACATTTAACATGTAGAAAAATGACATGGTAGAGCAGATGCATGAGGATATAATCAGTTTATAGGATCAAAGCCTAAAGCCATGTGTGAAACTAACCCCACTCTGTGTTACTTTAAATTGCACTGATAATTTAAATCTAACTTGCCCTAACAATAATACTTGTAGTAATAATACTAATTATAATATGAAAGAAAAAGGAGAAATAAAAAACTGCTCTTTCAATGTCACCACAGGAATAAGAGATAAGGTGACAAAAGAACATGCACTTTTCTATAAACTTAATGTAGTACCAATAGATGAAGATAGTAAAAATACTACGGGCAAATATAAGATGATAAATTGTAACACCTCAGTCATTACACAAGCCTGTCCAAAGGTATCCTTTAAGCCAATTCCCATACATTTTTGTGCCCCGGCTAGTTTTGCGATTCTAAAGTGTAAAGATAAGAAATTCAATAGAACAGGAGAATGTAGAAATGTCAGCACAGTACAATGTACACATAGAATTAGGCCAGTAGTATCAACTCAACTGCTGCTAAACGGCAGTCTAGCAGAAGAAAAGATAGTAATTAGATCTGCCAATCTCTCGAACAATGCTAAAACCATAATAGTACAGCTGAATAAATCTGTAAAAATTAATTGTACAAGACCCAACAATAATACAAGAAGAAGTATACACATAGGACCAGGGAGGGCATTTTATAGAACAGACATAATAAGAGATATAAGACAAGCGCATTATAACATTAGTAAGAAAGATTAGAATGACACTTTAAAACAGATAGTTATAAAATTAAAAGAAAAATTTAAGAATAAAACAATAGTCTTTACTCAATCCTCAGGAGAAGACCCAGAGATAGTGATGCATAGTTTTAATTGTAGAGAGGAATTTTTCTACTGTAATACAACACAGCTGTTTAATAGTACTTAGAATAATAGTACTTAGAATAGTACTGATAATTAGAATAGTACTGAATCAAATAGCACTATCACACTCCCATGCAGAATAAAACAAATTATAAACTTGTGGCAGGAAGTAAGAAGAGCAATGTATGCCCCTCCCATCCAAAGGCAAATTAGATGTTCATCAAATATTACAGGGCTGCTGCTAGTAAGAGATGGTAGGAGCAACAATAGTAGTAATGATACAGAGACCTTCAGGCCTAGAGGAAGAGATATGAAGGACAATTAGAGAAGTAAATTATATAAATATAAAGTAGTCAAAATTAAACCATTAAGAATAGCACCCACCCATGCAAAGAGAAGAGTGGTGCAAAAGGAAAAAAGAGCAATAAGACTTGAAGCTTTCTTCCTTAGGTTCTTAAGAGCAGCAGGAAGCACTATAGGCGCAGCGTCAGTGACGCTGACAGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAGCAGCAAAACAATTTGCTGAGAGCTATTGAGGCGCAACAGCATCTGTTGCAACTCACAGTCTAAGGCATCAAGCAGCTCCAGGCAAAAGTCCTGGCTTTAGAAAGATACCTAAAAGATCAACAGCTCCTAAGGATTTAAAGTTGCTCTGGAAAACTCATTTGCACCACTAATGTGCCCTGGAATATTAGTTGGAGCCCTAGATGGAATAGATCTCTAGATAAGATTTAGACTAACATGACCTAGAAGCAGTAAGAAAAAGAAATTGACAATTACACAGACATAATATATAACTTAATTGAACAATCACAGAACCAACAAGAACAGAATGAACAAGACTTATTGGCATTAGATAAGTAGGCAAGTTTGTAAAATTAGTTTGACATTACACAGTAGCTATAGTATATAAAAATATTCATAATAATAGTAAGAGGCTTGATAAGTTTAAGAATAGTTTTTACTATACTGTCTATAGTGAATAAAGTTAGGCAAGGATACTCACCATTGTCATTGCAGACCCTCCTCCCAACCCAGAGAGGACCCGACAGGCCCGAAAGAACAGAAGAAAGAGGTAGAAAGAAAGACAGAGGCACATCCACGAGATTAGTGCATAGATTCTTAGCACTCATCTAGGACGACCTGCGGAGCCTGTTCCTCTTCAGTTACCACCGCTTGAAAGACTTACTCTTAATTGCGGCGAGAATTGTAGAACTTCTAGGACGCAGAAAGTAAGAAGCACTGAAGTATTAGTAGAATCTCCTGCAGTATTAGAGTCAGGAAATAAAGAATAGTGCAGTTAGCTTGCTCAACACCACAGCAATAGCAGTAGCTGAGAGGACAGATAAAATTATAGAAGTATTACAAAGAGGCTTTAGAGCTATTCTCCACATACCTACACGAATAAGACAGGGCTTAGAAAAGGCTTTGCTATAA +MK115009.1,tat_exon2,7934,8027,8376,8469,forward,0.5255102040816324,RPSSQPREDPTGPKEQKKEVERKTEAHPRD,RPSSQPREDPTGPKEQKKEVERKTEAHPRD*,AGACCCTCCTCCCAACCCAGAGAGGACCCGACAGGCCCGAAAGAACAGAAGAAAGAGGTAGAAAGAAAGACAGAGGCACATCCACGAGATTAG +MK115009.1,rev_exon2,7935,8211,8377,8653,forward,0.6781884553958476,ILSTHLGRPAEPVPLQLPPLERLTLNCGENCRTSRTQKVRSTEVLVESPAVLESGNKE,DPPPNPERTRQARKNRRKR*KERQRHIHEISA*ILSTHLGRPAEPVPLQLPPLERLTLNCGENCRTSRTQKVRSTEVLVESPAVLESGNKE*,GACCCTCCTCCCAACCCAGAGAGGACCCGACAGGCCCGAAAGAACAGAAGAAAGAGGTAGAAAGAAAGACAGAGGCACATCCACGAGATTAGTGCATAGATTCTTAGCACTCATCTAGGACGACCTGCGGAGCCTGTTCCTCTTCAGTTACCACCGCTTGAAAGACTTACTCTTAATTGCGGCGAGAATTGTAGAACTTCTAGGACGCAGAAAGTAAGAAGCACTGAAGTATTAGTAGAATCTCCTGCAGTATTAGAGTCAGGAAATAAAGAATAG +MK115009.1,nef,8609,8996,8796,9417,forward,0.7255452386093717,MTYKRALDISHFLKEKGGLDGLIYSKRRQDILDLWLYNTQGYFPDWQNYTPGPGVRFPLCFR,MTYKRALDISHFLKEKGGLDGLIYSKRRQDILDLWLYNTQGYFPDWQNYTPGPGVRFPLCFR*CFKLVPVDPDKVEEASVRENNCLLSPENLHRMEDEHREVLQWRFDSRLAFHHIARELHPEYYKDC*,ATGACTTACAAGAGAGCTCTAGATATTAGCCACTTTTTAAAAGAAAAAGGGGGACTGGATGGGCTAATTTACTCCAAAAGAAGACAAGACATCCTTGATCTGTGGCTCTACAACACACAAGGCTACTTCCCTGACTGGCAGAACTACACACCAGGGCCAGGAGTCAGATTTCCACTGTGTTTTAGATAGTGCTTCAAGCTAGTACCAGTTGATCCAGATAAAGTAGAAGAGGCCAGTGTAAGAGAGAACAACTGCTTGTTAAGCCCCGAAAACCTGCATAGAATGGAGGACGAACACAGAGAAGTATTGCAGTGGAGGTTTGACAGCCGCCTAGCATTTCATCACATAGCCCGAGAGCTGCATCCGGAGTATTACAAGGACTGCTGA +MK115387.1,gag,292,1795,789,2292,forward,0.25120772946859904,MGARASVLSGGELDKWEKIRLRPGGKKRYKLKHIVWASRELERFAVNPGLLETTEGCKQILEQLQPSLPTGSEELRSLFNTVATLYCVHKRIEVQDTKEALEKIEEEQNKSKKKAQQAVADTGSTSQVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPVAPGQMREPRGSDIAGTTSTLQEQIAWMTSNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYKVLRAEQASQDVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSNIIMMQRGNFRNQRKTVKCFNCGKEGHIARNCRAPRKKGCWKCGREGHQMKDCTERQANFLGKIWPSSKGRPGNFLQSRPEPTAPPEESFRFGEETATPPQKQEPVDKEVYPLASLKSLFGNDPSSQ,MGARASVLSGGELDKWEKIRLRPGGKKRYKLKHIVWASRELERFAVNPGLLETTEGCKQILEQLQPSLPTGSEELRSLFNTVATLYCVHKRIEVQDTKEALEKIEEEQNKSKKKAQQAVADTGSTSQVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPVAPGQMREPRGSDIAGTTSTLQEQIAWMTSNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYKVLRAEQASQDVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSNIIMMQRGNFRNQRKTVKCFNCGKEGHIARNCRAPRKKGCWKCGREGHQMKDCTERQANFLGKIWPSSKGRPGNFLQSRPEPTAPPEESFRFGEETATPPQKQEPVDKEVYPLASLKSLFGNDPSSQ*,ATGGGTGCGAGAGCGTCTGTATTAAGCGGGGGAGAATTAGATAAATGGGAAAAAATTCGGTTAAGGCCAGGAGGAAAGAAAAGATATAAATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTTAACCCCGGCCTTTTAGAAACAACAGAGGGATGTAAACAAATACTGGAACAGCTGCAACCATCCCTTCCGACAGGATCAGAAGAACTTAGATCATTATTTAATACAGTAGCAACCCTCTATTGTGTGCATAAGAGAATAGAGGTACAAGACACCAAGGAAGCCTTAGAAAAGATAGAAGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAGGCAGTAGCTGACACAGGAAGTACCAGCCAGGTCAGCCAAAATTACCCGATAGTGCAGAACCTCCAGGGGCAAATGGTACATCAGGCCATATCGCCTAGAACTTTAAATGCATGGGTGAAAGTAGTAGAAGAGAAGGCCTTTAGCCCAGAGGTAATACCCATGTTTTCAGCATTATCGGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATCAATGAGGAGGCTGCAGAATGGGATAGAGTGCATCCAGTGCATGCAGGGCCTGTTGCACCAGGCCAAATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAAGAACAAATAGCATGGATGACAAGTAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCCTGGGATTAAATAAGATAGTAAGAATGTATAGCCCTACCAGCATTTTGGACATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAAAGTCCTAAGAGCCGAGCAAGCATCGCAGGATGTAAAAAATTGGATGACAGAAACCTTATTGGTCCAAAATGCAAACCCAGATTGTAAGACTATTTTAAAAGCATTGGGACCAGCAGCAACACTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGGGGACCCGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAACAAATTCAAATATCATAATGATGCAGAGAGGCAATTTTAGGAACCAAAGAAAGACTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAGGGAAGGACACCAAATGAAAGATTGTACTGAGAGACAGGCTAATTTTTTAGGGAAGATCTGGCCTTCCTCCAAGGGAAGGCCAGGGAACTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAGGAGAGCTTCAGGTTTGGGGAGGAGACAGCAACTCCTCCTCAGAAGCAGGAGCCGGTGGACAAGGAAGTGTATCCTTTAGCTTCCCTCAAATCACTCTTTGGCAACGACCCCTCGTCACAATAA +MK115387.1,pol,1587,4599,2084,5096,forward,0.17509882471546434,FFREDLAFLQGKARELSSEQTRANSPTRGELQVWGGDSNSSSEAGAGGQGSVSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVQLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSITVLDVGDAYFSIPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMIKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLKWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPDKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLKGAKALTEVIQLTEEAELELAENREILKEPVHGVYYDPSKDLIAELQKQGQGQWTYQIYQEPFKNLKTGKYARTRGTHTNDVKQLTEAVQKITTESIVIWGKTPRFKLPIQKETWDTWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTSRGRQKVVSLTDTTNQKTELQAICLALQDSGLEVNIVTDSQYALGIIQAQPDRSESEIVNQIIEQLIKKERVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEATHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKAIHTDNGTNFTSATVKAACWWAGIKQECGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDNRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED,FFREDLAFLQGKARELSSEQTRANSPTRGELQVWGGDSNSSSEAGAGGQGSVSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVQLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSITVLDVGDAYFSIPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMIKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLKWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPDKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLKGAKALTEVIQLTEEAELELAENREILKEPVHGVYYDPSKDLIAELQKQGQGQWTYQIYQEPFKNLKTGKYARTRGTHTNDVKQLTEAVQKITTESIVIWGKTPRFKLPIQKETWDTWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTSRGRQKVVSLTDTTNQKTELQAICLALQDSGLEVNIVTDSQYALGIIQAQPDRSESEIVNQIIEQLIKKERVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEATHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKAIHTDNGTNFTSATVKAACWWAGIKQECGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDNRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAGATCTGGCCTTCCTCCAAGGGAAGGCCAGGGAACTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAGGAGAGCTTCAGGTTTGGGGAGGAGACAGCAACTCCTCCTCAGAAGCAGGAGCCGGTGGACAAGGAAGTGTATCCTTTAGCTTCCCTCAAATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAGGAGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGACACAGTATTAGAAGAAATGAGTTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACCTATAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGCAGAAATTTGTTGACTCAGATTGGTTGTACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTACAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAAGAAGGGAAGATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGGGAACTTAATAAAAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACACCCCGCAGGGTTAAAAAAGAAGAAATCAATAACAGTACTGGATGTGGGTGATGCATATTTTTCAATTCCCTTAGATAAAGACTTCAGGAAGTATACTGCATTTACCATACCTAGTATAAATAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGATAAAAATCTTAGAGCCTTTTAGAAAGCAAAATCCAGACATAGTTATCTATCAATACATGGATGACTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAACTGAGACAACACTTGTTGAAGTGGGGATTGACCACACCAGATAAAAAACATCAGAAAGAACCCCCATTCCTGTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAGACAAAGATAGCTGGACTGTCAATGACATACAGAAGCTAGTGGGAAAATTGAATTGGGCAAGTCAGATTTATGCAGGGATTAAAGTGAGACAATTATGTAAACTCCTTAAGGGAGCCAAAGCGCTAACAGAAGTGATACAACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTCTAAAAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAGTTACAGAAGCAGGGGCAAGGCCAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAGTATGCAAGAACGAGGGGTACCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTGATATGGGGAAAGACCCCTAGATTTAAACTACCCATACAGAAAGAAACATGGGATACCTGGTGGACAGAATATTGGCAAGCCACCTGGATTCCCGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAATTAGAAAAAGAACCTATTGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAGCAGAGGAAGACAAAAGGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAACTGCAAGCAATTTGTCTAGCATTGCAGGATTCAGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCACTAGGAATAATTCAAGCACAACCAGATAGGAGTGAATCAGAGATAGTCAATCAAATAATAGAGCAGTTAATAAAAAAGGAAAGGGTCTACCTTGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTGCTGGAATCAGGAAAGTCCTATTTTTGGATGGAATAGATAAGGCCCAAGAGGAGCATGAGAAATATCACAATAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCCAGTTGTGATAAATGCCAGCTAAAGGGAGAAGCCACGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAATTAGATTGTACACATTTAGAAGGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAAGAAACAGCATACTTCCTCTTAAAATTAGCAGGAAGGTGGCCAGTGAAAGCAATACATACAGACAATGGAACCAATTTCACCAGTGCTACGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATGTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAAGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTCCAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACAGACCTACAAACTAAAGAATTACAGAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAACAGAGATCCACTTTGGAAAGGACCAGCAAAACTTCTTTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGACATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG +MK115387.1,vif,4543,5122,5040,5619,forward,0.3291253381424706,MENRWQVMIVWQVDRMRISTWKSLVKHHMYISKKAQGWFYRHHYENPHPRISSEVHIPLGDARLVITTYWGLHTGERDWHLGQGVSIECRERKYSTQVTPDLADQLIHLYYFDCFAESAIREAILGHRVSPRCEYQAGHNKVGSLQYLALTALVTPKKTKPPLPSVTKLTEDRWNKPQKTKGHRGSQTMNGH,MENRWQVMIVWQVDRMRISTWKSLVKHHMYISKKAQGWFYRHHYENPHPRISSEVHIPLGDARLVITTYWGLHTGERDWHLGQGVSIECRERKYSTQVTPDLADQLIHLYYFDCFAESAIREAILGHRVSPRCEYQAGHNKVGSLQYLALTALVTPKKTKPPLPSVTKLTEDRWNKPQKTKGHRGSQTMNGH*,ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGCACATGGAAAAGTTTAGTAAAACACCATATGTACATTTCAAAGAAAGCCCAGGGATGGTTTTATAGACATCACTATGAAAATCCTCATCCAAGAATAAGTTCAGAAGTACACATCCCGCTAGGGGATGCTAGATTGGTAATAACAACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCATTTGGGTCAAGGAGTCTCCATAGAATGCAGGGAAAGGAAATATAGCACACAAGTAACCCCTGACCTAGCAGACCAACTAATTCACCTGTATTATTTTGATTGTTTTGCAGAATCTGCTATAAGAGAGGCCATATTAGGACATAGAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGATCTCTACAGTACTTGGCACTAACAGCATTAGTAACACCAAAAAAGACAAAGCCACCTTTGCCTAGTGTGACAAAACTGACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCAAACAATGAATGGACACTAG +MK115387.1,vpr,5061,5355,5558,5850,forward,0.39444027047332864,MEQAPEDQGPQREPNNEWTLELLEELKREAVRHFPRTWLHGLGQHIYETYGDTWTGVEALIRILQQLLFIHFRIGCQHSRIGITRQRRARNGASRS,MEQAPEDQGPQREPNNEWTLELLEELKREAVRHFPRTWLHGLGQHIYETYGDTWTGVEALIRILQQLLFIHFRIGCQHSRIGITRQRRARNGASRS*I,ATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCAAACAATGAATGGACACTAGAGCTCTTAGAAGAGCTTAAGAGAGAAGCTGTTAGACATTTTCCTAGGACATGGCTTCATGGCTTGGGACAACATATCTATGAAACTTATGGGGATACTTGGACAGGAGTGGAAGCCTTAATAAGAATTCTGCAACAACTGCTGTTTATTCATTTCAGAATTGGGTGCCAACATAGCAGAATAGGCATCACTCGACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGATT +MK115387.1,tat_exon1,5332,5551,5830,6045,forward,0.40192926045016075,MEPVDPRLEPWKHPGSQPKTPCTKCYCKKCCFHCQVCFITKGLGISYGRKKRRQRRRPPQDSQTHQVPLPKQ,MEPVDPRLEPWKHPGSQPKTPCTKCYCKKCCFHCQVCFITKGLGISYGRKKRRQRRRPPQDSQTHQVPLPKQ*,ATGGAGCCAGTAGATCCTAGATTAGAGCCCTGGAAGCATCCAGGAAGTCAGCCTAAGACTCCTTGTACCAAATGCTATTGTAAAAAATGCTGCTTTCATTGCCAAGTTTGTTTCATAACAAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGACCTCCTCAAGACAGTCAGACTCATCAAGTACCTCTACCAAAGCAGTGA +MK115387.1,rev_exon1,5471,5552,5969,6045,forward,0.5058246474555488,MAGRSGDSDEDLLKTVRLIKYLYQSSE,MAGRSGDSDEDLLKTVRLIKYLYQSSE,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGACCTCCTCAAGACAGTCAGACTCATCAAGTACCTCTACCAAAGCAGTGAG +MK115387.1,vpu,5563,5809,6061,6310,forward,0.5534082923401267,MQSLYILTIVALVVAAILAIVVWAIVLIEYKKILKQRRIDRLIDRIIDRAEDSGNESEGDQEELSALVEMGHHAPWNVDDL,MQSLYILTIVALVVAAILAIVVWAIVLIEYKKILKQRRIDRLIDRIIDRAEDSGNESEGDQEELSALVEMGHHAPWNVDDL*,ATGCAATCCTTATATATATTAACAATAGTAGCATTAGTAGTAGCAGCAATATTAGCAATAGTTGTGTGGGCCATAGTACTCATAGAATATAAGAAAATATTAAAACAAAGGAGAATAGATAGGTTAATTGATAGAATAATAGATAGGGCAGAAGACAGTGGCAATGAGAGTGAAGGAGATCAAGAGGAGTTATCAGCACTTGTGGAGATGGGGCATCATGCTCCTTGGAATGTTGATGATCTATAG +MK115387.1,env,5726,8288,6224,8795,forward,0.5032200089860714,MRVKEIKRSYQHLWRWGIMLLGMLMIYSTADQWWVTVYYGVPVWREANTTLFCASDAKAYSTEAHNVWATHACVPTDPNPQEIVIGNVTEDFNMWKNNMVDQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDIRNSTVTSNTTTWGEMTNCTFNITTSIKDKMKKEAALFYKIDLVEIDEEKNNSSTRYRLINCNTSAITQACPKVSFEPIPIHFCAPAGFAILKCNNKKFSGKGPCTNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSDNITDNTKNIIVQLKEAIQIFCIRPNNNTRKSINIGPGRAFYTTGDIIGDIRQAHCNISGNWNNTLKQIATQLGKQLNQTQQIIFNSSAGGDPEIVTHSFNCGGEFFYCNSSSLFNSTWTKNGTGSWQSNDTQNGNITLQCRIKQIINLWQGVGKAMYAPPISGQINCTSNITGLVLTRDGGKVINETETFRPGGGNMKDNWRSELYKYKVVRIEPLGIAPTKAKRRVVQREKRAVGLGAMFLGFLGAAGSTMGAASIALTEQARRVLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQLLGLWGCSGKLICTTTVPWNRSWGGHNKNLDDIWGNMTWMEWEKEIDNYTSLIYTLITESHSQQEKNEQELLALDKWASLWNWFDISQWLWYIKIFIMIVGGLVGLRIVFAVLSIVNKVRQGYSPLSFQTLLPAPRGADRPEGIEEGGGERDKGRSGRLVNGFLALIWDDLRSLCLFSYHRLSDLLLIVIRIVELLGRRGWEALKYWWNLLQYWSQELKNSAVSLLNTTAIVVAEGTDRIIEILQRIGRAFLHIPRRIRQGLERALL,MRVKEIKRSYQHLWRWGIMLLGMLMIYSTADQWWVTVYYGVPVWREANTTLFCASDAKAYSTEAHNVWATHACVPTDPNPQEIVIGNVTEDFNMWKNNMVDQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDIRNSTVTSNTTTWGEMTNCTFNITTSIKDKMKKEAALFYKIDLVEIDEEKNNSSTRYRLINCNTSAITQACPKVSFEPIPIHFCAPAGFAILKCNNKKFSGKGPCTNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSDNITDNTKNIIVQLKEAIQIFCIRPNNNTRKSINIGPGRAFYTTGDIIGDIRQAHCNISGNWNNTLKQIATQLGKQLNQTQQIIFNSSAGGDPEIVTHSFNCGGEFFYCNSSSLFNSTWTKNGTGSWQSNDTQNGNITLQCRIKQIINLWQGVGKAMYAPPISGQINCTSNITGLVLTRDGGKVINETETFRPGGGNMKDNWRSELYKYKVVRIEPLGIAPTKAKRRVVQREKRAVGLGAMFLGFLGAAGSTMGAASIALTEQARRVLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQLLGLWGCSGKLICTTTVPWNRSWGGHNKNLDDIWGNMTWMEWEKEIDNYTSLIYTLITESHSQQEKNEQELLALDKWASLWNWFDISQWLWYIKIFIMIVGGLVGLRIVFAVLSIVNKVRQGYSPLSFQTLLPAPRGADRPEGIEEGGGERDKGRSGRLVNGFLALIWDDLRSLCLFSYHRLSDLLLIVIRIVELLGRRGWEALKYWWNLLQYWSQELKNSAVSLLNTTAIVVAEGTDRIIEILQRIGRAFLHIPRRIRQGLERALL*,ATGAGAGTGAAGGAGATCAAGAGGAGTTATCAGCACTTGTGGAGATGGGGCATCATGCTCCTTGGAATGTTGATGATCTATAGTACTGCAGACCAGTGGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAGAGAAGCAAACACCACTCTATTTTGTGCATCAGATGCTAAAGCATATAGTACAGAGGCACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAATAGTAATAGGAAATGTAACAGAAGATTTTAACATGTGGAAGAATAACATGGTAGATCAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGTCTAAAGCCATGTGTGAAACTAACCCCACTCTGTGTTACTTTAAATTGTACTGATATTAGGAATAGTACCGTTACTTCTAATACTACTACTTGGGGAGAAATGACAAACTGCACTTTCAATATCACCACAAGCATAAAGGATAAGATGAAAAAAGAAGCGGCACTTTTTTATAAAATTGATTTAGTAGAAATAGATGAAGAGAAAAATAACAGTAGTACCAGATATAGGTTGATAAATTGTAACACCTCAGCCATTACACAAGCCTGCCCAAAGGTATCCTTTGAGCCAATTCCCATACATTTTTGTGCCCCGGCTGGTTTTGCAATTCTAAAGTGTAATAATAAGAAGTTCAGTGGAAAGGGACCATGTACAAATGTCAGCACAGTGCAATGTACACATGGAATTAAGCCAGTAGTATCAACTCAACTGCTGTTAAATGGCAGTCTAGCAGAAGAAGAGGTAATGATTAGATCTGACAATATCACAGACAATACTAAAAACATAATAGTACAGTTGAAGGAAGCCATACAAATTTTCTGTATAAGACCCAACAACAATACAAGAAAAAGTATAAATATAGGACCAGGGAGAGCATTTTACACAACAGGAGATATAATAGGAGACATAAGGCAAGCACATTGTAACATTAGTGGAAATTGGAATAACACTTTAAAACAGATAGCTACACAATTAGGAAAACAACTGAATCAAACACAACAAATAATCTTTAATTCATCCGCAGGAGGGGACCCAGAGATTGTAACACACAGTTTTAATTGTGGAGGGGAATTCTTCTATTGTAATTCATCATCACTGTTTAATAGTACCTGGACTAAAAATGGTACTGGTAGTTGGCAGTCTAATGATACTCAGAATGGTAATATCACACTCCAATGCAGAATAAAACAAATTATAAACCTGTGGCAGGGAGTAGGAAAAGCAATGTATGCCCCTCCCATCAGTGGACAAATTAACTGTACATCAAATATTACAGGGCTGGTTTTAACAAGAGATGGGGGGAAGGTGATTAATGAAACTGAGACCTTTAGACCTGGAGGAGGAAATATGAAGGATAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAGAATTGAACCATTAGGAATAGCACCCACCAAGGCAAAAAGAAGAGTGGTGCAAAGAGAGAAAAGAGCAGTAGGACTGGGAGCTATGTTCCTTGGGTTCTTGGGAGCAGCCGGAAGCACTATGGGCGCAGCGTCAATAGCGCTGACGGAACAGGCCAGACGAGTATTGTCTGGTATAGTGCAACAGCAGAACAATTTGCTGAGGGCTATTGAGGCGCAACAGCATTTGTTGCAACTCACAGTCTGGGGCATTAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTACAGGATCAACAGCTCCTAGGACTTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTACTGTGCCTTGGAATCGTAGTTGGGGTGGGCATAACAAAAATCTAGATGACATTTGGGGTAACATGACCTGGATGGAGTGGGAAAAAGAAATTGACAATTACACAAGCTTAATATACACCTTAATTACAGAATCACATTCCCAACAAGAAAAGAATGAACAAGAATTATTGGCATTAGATAAATGGGCAAGTTTGTGGAATTGGTTTGACATATCACAATGGCTGTGGTATATAAAAATATTCATAATGATAGTAGGAGGCTTGGTAGGTTTAAGAATAGTTTTTGCTGTACTTTCTATAGTGAATAAAGTTAGGCAGGGATACTCACCATTATCATTTCAGACCCTCCTCCCAGCTCCGAGGGGAGCCGACAGGCCCGAAGGAATAGAAGAAGGAGGTGGAGAGAGAGACAAAGGCAGATCCGGTCGATTAGTGAACGGATTCTTAGCACTTATCTGGGACGATCTACGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGCGACTTACTCTTGATTGTGATCAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAATATTGGTGGAATCTCCTGCAGTACTGGAGTCAGGAACTAAAGAATAGTGCTGTCAGCTTGCTCAACACCACAGCTATAGTAGTAGCTGAAGGGACAGATAGGATAATAGAAATATTACAAAGAATTGGTAGAGCTTTTCTCCACATACCTAGGAGAATAAGACAGGGCTTAGAAAGGGCTTTGCTATAA +MK115387.1,tat_exon2,7869,7965,8376,8469,forward,0.4918032786885247,RPSSQLRGEPTGPKE,RPSSQLRGEPTGPKE*KKEVERETKADPVD**,AGACCCTCCTCCCAGCTCCGAGGGGAGCCGACAGGCCCGAAGGAATAGAAGAAGGAGGTGGAGAGAGAGACAAAGGCAGATCCGGTCGATTAGTGA +MK115387.1,rev_exon2,7870,8146,8377,8653,forward,0.32366339007432277,DPPPSSEGSRQARRNRRRRWRERQRQIRSISERILSTYLGRSTEPVPLQLPPLERLTLDCDQDCGTSGTQGVGSPQILVESPAVLESGTKE,DPPPSSEGSRQARRNRRRRWRERQRQIRSISERILSTYLGRSTEPVPLQLPPLERLTLDCDQDCGTSGTQGVGSPQILVESPAVLESGTKE*,GACCCTCCTCCCAGCTCCGAGGGGAGCCGACAGGCCCGAAGGAATAGAAGAAGGAGGTGGAGAGAGAGACAAAGGCAGATCCGGTCGATTAGTGAACGGATTCTTAGCACTTATCTGGGACGATCTACGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGCGACTTACTCTTGATTGTGATCAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAATATTGGTGGAATCTCCTGCAGTACTGGAGTCAGGAACTAAAGAATAG +MK115387.1,nef,8289,8940,8796,9417,forward,0.4543503148254113,MGGKWSKSSRVGWNAVRERMRRAQPTADRERAEPAADGVGAASRDLEKYGALTSRNTAATNADCAWLEAQEEEDEVGFPVRPQVPLRPMTYKAALDLSHFLKEKGGLEGLVYSQKRQDILDLWIYHTQGYFPDWQNYTPGPGIRYPLTFGWCFKLVPLEPDQVEEANEGENNSLLHPLSQHGMDDPEKEVLVWRFDSRLAFHHMAREKHPEFYKDC,MGGKWSKSSRVGWNAVRERMRRAQPTADRERAEPAADGVGAASRDLEKYGALTSRNTAATNADCAWLEAQEEEDEVGFPVRPQVPLRPMTYKAALDLSHFLKEKGGLEGLVYSQKRQDILDLWIYHTQGYFPDWQNYTPGPGIRYPLTFGWCFKLVPLEPDQVEEANEGENNSLLHPLSQHGMDDPEKEVLVWRFDSRLAFHHMAREKHPEFYKDC*,ATGGGTGGCAAGTGGTCAAAAAGTAGTAGGGTTGGATGGAATGCAGTGAGGGAAAGAATGAGACGAGCTCAGCCAACAGCAGATAGGGAACGAGCTGAGCCAGCAGCAGATGGGGTGGGAGCAGCATCTAGAGACCTGGAAAAATATGGAGCACTTACAAGTAGGAATACAGCAGCTACTAATGCTGATTGTGCCTGGCTAGAAGCACAAGAGGAGGAGGATGAGGTGGGTTTTCCAGTCAGACCTCAGGTACCTTTAAGACCCATGACTTATAAAGCAGCTCTAGATCTGAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAGTTTACTCCCAAAAAAGGCAAGATATCCTTGATCTGTGGATCTACCACACACAAGGCTATTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGATCAGATATCCCCTGACCTTTGGATGGTGCTTCAAGCTAGTACCACTTGAGCCAGATCAGGTAGAAGAGGCCAATGAAGGAGAGAACAACAGCCTGTTACACCCTCTGAGCCAGCATGGGATGGATGACCCGGAGAAAGAAGTGCTAGTGTGGAGGTTTGACAGCCGCCTCGCATTTCATCACATGGCCCGAGAGAAGCATCCGGAGTTCTACAAAGACTGCTGA +MK115491.1,gag,521,2027,789,2292,forward,0.2932056543547651,MGARASILSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWTTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSANVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE,MGARASILSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWTTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSANVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE*R*,ATGGGTGCGAGAGCGTCAATATTAAGCGGGGGAAAATTAGATGCATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATTTAGTATGGGCAAGCAGGGAGCTAGAACGATTTGCCGTTAACCCTGGCCTGTTAGAAACATCAGAGGGATGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATTTAATGCAGTAGCAGTCCTCTATTGTGTACATCAAAGGATACAGGTACAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGTAGCAGCAGCTGACACTGACACAGGAAACAGCAGCCAAAATTACCCCATAGTGCAGAACCTCCAGGGGCAAATGGTACATCAGCCCCTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAAAAGGCCTTCAGCCCAGAAGTCATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGACGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCTTGGGATTAAATAAAATAGTAAGGATGTATAGCCCTACCAGTATTCTGGATATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAGAACTTTAAGAGCTGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATTCGAATCCAGATTGTAAGACTATTTTAAAAGCATTAGGACCAGCAGCAACACTAGAGGAAATGATGACAGCATGTCAAGGAGTGGGGGGACCAGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAAATTCAGCTAATGTAATGATGCAGAGAGGCAATTTTAGAAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACATCAAATGAAAGACTGTACAGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAG +MK115491.1,pol,1813,4825,2084,5096,forward,0.1922427454342348,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSTGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSTGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAGGGGGGCAATTTAAAGAAGCTTTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACCCATAGAAATCTGTGGACACAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGCTTGGTTGTACCTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTCAATAAGAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAATTCCCTTAGATAAAGAATTCAGGAAGTATACTGCATTTACCATACCTAGTACAAATAATGAGACACCAGGGATTAGGTATGAGTACAATGTGCTGCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGCAAAATCCAGATATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAACTGAGACAACATCTGTTAAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAGTGGACAGTACAGCCTATAATACTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTACGCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAGGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTTTAAGAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGCAATGGACAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTACAAAAGATAGCCACAGAAAGCATAGTAATATGGGGAAAAACTCCTAAATTTAGACTACCTATACAAAAAGAAACATGGGAGACATGGTGGGCAGAGTACTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAATTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACTAAATTAGGCAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAGGTTATCTCCCTAACGGACACAACAAATCAAAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATCAGAAGTAAACATAGTAACAGACTCACAATATACATTAGGAATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAATCAGATAATAGAGCAGTTAATAAAAAAGGAAAAAGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGACAAACTAGTCAGTACTGGAGTCAGGAGAGTACTATTTCTAGATGGAATAGATAAGGCCCAAGAAGACCATGAGAAATATCACAGTAATTGGAGAGCAATGGCTGGTGATTTTAATATACCCCCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCAAAAAGGAGAGGCCATGCATGGACAAGTAGATTGTAGTCCAGGAATATGGCAACTAGATTGTACACATCTAGAAGGGAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTCTCCTGAAACTAGCAGGGAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTAATGTGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCCATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTATAGTGCAGGGGAAAGAATAGTAGATATAATAGCAACAGACCTACAAACTAAAGAATTACAGAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGGAGAAAAGCAAAAATCATTAGGGATTATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG +MK115491.1,vif,4769,5348,5040,5619,forward,0.36355859709153127,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH*,ATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATGTTTCAAAGAAAACTAAAGGATGGTTTTATAGACATCACTATGAAAGCACTCATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTGGTAGTAACAACATATTGGGGCCTGAATACAGGAGAAAGAGAATGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGAAAAAGGAAATATAGCACACAAGTTGACCCTAACCTAGCAGACCAACTAATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACATATAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGCTCTCTACAATACTTGGCACTAAAAGCATTAACAACACCAAAGAGAAGAAAGCCACCTTTACCTAGTGTTAGGAAACTGACAGAGGATAGATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAG +MK115491.1,vpr,5287,5581,5558,5850,forward,0.39444027047332864,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS*T,ATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAGAGCTTTTAGAGGAACTTAAGAATGAAGCGGTTAGACATTTTCCTAGGCCGTGGCTCCATGGCTTAGGACAACATATCTATGAAACTTATGGGGACACTTGGACAGGAGTGGAGGCCATAATAAGAACCCTGCAACAACTGCTGTTTATTCATTTCAGACTTGGGTGTCGACATAGCAGAATAGGCATTGTGCCACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACT +MK115491.1,tat_exon1,5558,5777,5830,6045,forward,0.31992687385740404,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ*,ATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCACCCAGGAAGTCAGCCTAAAACTCCTTGTACTAACTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAAAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGTAA +MK115491.1,rev_exon1,5697,5775,5969,6045,forward,0.48200514138817474,MAGRSGDSDEELLKAVRLIKILYQSS,MAGRSGDSDEELLKAVRLIKILYQSS,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGT +MK115491.1,vpu,5789,6035,6061,6310,forward,0.5254806794847863,MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAKDSGNESEGDQEELSALMEMGHHAPGDVDDL,MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAKDSGNESEGDQEELSALMEMGHHAPGDVDDL*,ATGCAACCTCTGCACATAGCAGCAATAGTAGGATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGACCATAGTGTTAATAGAATATAGGAAAATATTAAGACAAAAAAGGATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAAAAGACAGTGGCAATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAG +MK115491.1,env,5952,8493,6224,8795,forward,0.4421225244922844,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEAHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRNKMQKEYALFYKLDVVPIDNDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYENKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSETETFRPGGGDMKDNWRSELYKYKVEKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEAHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRNKMQKEYALFYKLDVVPIDNDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYENKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSETETFRPGGGDMKDNWRSELYKYKVEKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL*,ATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTGACAGTCTATTATGGGGTACCTGTATGGAAAGAAGCAAACACCACTCTATTTTGTGCATCGGATGCTAAAGCATATACCACAGAGGCACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGGATTGGAAAATGTGACAGAAAATTTTAACATGTGGAAAAATAACATGGTAGAACAGATGCATGAGGATGTAATCAATTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCACTAATCTGAATGTTACTAATACCAATAGCAGTAGTGAGGAGGGAAAGATGGCGGAAGAAATGAGAAACTGCTCTTTCAATATCACCACAAAAATAAGAAATAAGATGCAGAAGGAATATGCACTTTTTTATAAACTTGATGTAGTACCAATAGATAATGATAATACAAGTTATACATTGATAAATTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCTATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAGGATAAGAAGTTCAATGGATCAGGACCATGTAAAAATGTCAGCACAGTACAATGTACACATGGAATTAAGCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTTTAGCAGAAGAAGAGGTAGTAATTAGATCTGAAAATTTCACGAACAATGCTAAAACCATAATAGTACATCTGAAGGAACCTATACAAATTAATTGTACAAGACCCAACAACAATACAATGAAAAGTATCCCTCTAGGACCAGGAAGAGCATTCTATGCAACAGGAGCCATAATAGGAGATATAAGACAAGCACATTGTAACCTTAGTAGAAAAGCATGGAATAATACTTTAAAACAGGTAGTTGAAAAATTAAAAGAACAATATGAGAATAAAACAATAATCTTTAATCACTCCTCAGGAGGGGACCCAGAAATTATAATGCATACTTTTAATTGTGGAGGGGAATTTTTCTATTGTAATACAACACAGCTGTTTAATAGTACTTGGAATAGTACTTGGACTGGGAATGCTACCGAATTAGATGGAAACATCACACTCCCATGCAGAATAAAACAGATTATAAACAGGTGGCAAGAAGTAGGAAAAGCAATGTATGCCCCTCCCATTAGAGGAAAAATTAGATGTTCATCAAATATTACAGGGTTACTATTAGTAAGAGATGGTGGTAACACGAGCGAGACTGAGACCTTCAGACCTGGAGGAGGAGATATGAAGGACAATTGGAGGAGTGAATTATATAAATATAAAGTAGAAAAAATTGAGCCATTAGGAGTAGCACCCACCAGGGCAAAGAGAAGAGTGGTGCAAAGAGAAAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAAGCCAGGCTGTTATTGTCTGGTATAGTGCAACAGCAAAACAATTTGCTGAGAGCTATTGAGGCGCAACAACATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTACAGGATCAACAGCGCCTGGGAATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCCTGGAATGCTAGTTGGAGTAATAAATCTCTGAATCAGATTTGGGATAACATGACCTGGATGGAGTGGGAAAGAGAAATTAACAATTACACAGACACAATATACACCTTAATTGAAAAGGCGCAGAACCAGCAGGAAAAAAATGAACAAGAATTATTGGAATTGGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAAATGGCTGTGGTACATAAAATTATTCATAATGATAGTAGGAGGATTGATAGGTTTAAGAATAGTTTTTGCTGTACTTGCTATAGTAAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGCCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAGCTTATTCAATGTCACAGCCATCGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAAGAGCTTGTAGAGCTCTTCTCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCATTGTTATAA +MK115491.1,tat_exon2,8074,8170,8376,8469,forward,0.3161764705882347,RPTSQPRGDPTGPKESKKKVEKETETDQFD,RPTSQPRGDPTGPKESKKKVEKETETDQFD**,AGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGA +MK115491.1,rev_exon2,8075,8360,8377,8653,forward,0.38952607660679506,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVPLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVPLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE*CY*,GACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGCCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAG +MK115491.1,nef,8494,9115,8796,9417,forward,0.49848743916874616,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPMSLHGMEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPMSLHGMEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC*H*,ATGGGGGGCAAGTGGTCAAAAAGTAGTGGGGGTGGATGGCCTGCTGTAAGGGAAAGAATGAGACGAACTGAGCCAGCAGCAGAAGGGGTGGGAGCAGTATCTCGAGACCTGGAAAGACATGGAGCAGTCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGCGCCTGGCTGGAAGCACAAGAAGAGGACAGTGAAGTGGGTTTTCCAGTCAGACCTCAGGTGCCTTTAAGACCAATGACTTTCAAAGGAGCTCTCGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCCCAAAAAAGACAAGATATCCTTGACCTGTGGGTCTACAACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGACCAGATATCCACTGACCTTTGGGTGGTGTTTCAAGCTAGTACCAGTGGAGCCAGAAGAGGCCAATCAAGGAGAGAACAACTGCTTGTTACACCCTATGAGCCTGCATGGGATGGAGGACCCGGAAAAAGAAGTATTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCACATGGCCCGAGAGAAGCATCCGGAGTACTACAAAGACTGCTGACATTGA +MK116110.1,gag,0,1557,140,1643,forward,0.77360695245746,MVFISCGVAPSANAENIGITSGLKAFSSTTFTHAFKVLGDMA,PESESRTREVLSTQDSAC*ALWPGPPTP*HAVIISSSVAAGPNAFKIVLQSGFAFWTNKVSVIQFFTSCEACSALRVL*NRST*SLKGSFGPCFMSKMLTGLYILTILFNPRITHLL*ISPTGIGGLFVIHPICS*RVLVVPAISLPLGSLIWPGATGPACTGCNLSHSAASSLMVSFNICIAA*CPPTVFSMVFISCGVAPSANAENIGITSGLKAFSSTTFTHAFKVLGDMA*CTICPWRFCTIG*FWLTWLLFPAPAAACCAFILLLFCSSSILSSAPLVSCISIL*CIQ*RTATVLYNDLSSSDPVWRDGCSCPSICLQPSDVSNRPGLTANRSSSLLAHTRCFNLYFFFPPGLNRIFSHWSNFPPLNTDALAPISLLLASAR*KLFWRTHQSPKQ*AK*IQLP**CRKAILGTKRRLLSVSTVVK*GI*QKIAGPPGERAVGNVDRKDTR*KIVVRDRLIF*GNSGLPTRGGQGISFRADQSQQPHQRRASGLGKRQQLPLRSRSR*TGNYIP*,CCTGAAAGCGAAAGTAGAACCAGAGAAGTTCTCTCGACGCAGGACTCGGCTTGCTGAGCTTTATGGCCGGGTCCCCCCACTCCCTGACATGCTGTCATCATTTCTTCTAGTGTAGCTGCTGGTCCCAATGCTTTTAAAATAGTCTTACAATCTGGGTTTGCATTTTGGACCAACAAGGTTTCTGTCATCCAATTTTTTACATCCTGTGAAGCTTGCTCGGCTCTTAGGGTTTTATAGAACCGGTCTACATAGTCTCTAAAGGGTTCCTTTGGTCCTTGTTTTATGTCCAAAATGCTGACAGGACTATACATTCTTACTATTTTATTTAATCCCAGGATTACCCATCTTTTATAGATATCTCCTACTGGGATAGGTGGATTATTTGTCATCCATCCTATTTGTTCCTGAAGGGTACTAGTAGTTCCTGCTATATCACTTCCCCTTGGTTCTCTCATTTGGCCTGGTGCAACAGGCCCTGCATGCACTGGATGCAATCTATCCCATTCTGCAGCTTCCTCATTGATGGTCTCTTTTAATATTTGCATTGCTGCTTGATGTCCCCCCACTGTATTTAGCATGGTGTTTATATCTTGTGGGGTGGCTCCTTCTGCTAATGCTGAAAACATAGGTATTACTTCTGGGCTAAAAGCCTTTTCTTCTACTACTTTTACCCATGCATTTAAAGTTCTAGGTGACATGGCCTGATGTACCATTTGCCCCTGGAGGTTTTGCACTATAGGGTAGTTTTGGCTGACCTGGCTGTTATTTCCTGCGCCAGCTGCTGCTTGCTGTGCTTTCATCTTGCTTTTGTTTTGCTCTTCCTCTATCTTATCTAGCGCTCCCTTGGTGTCTTGTATCTCTATCCTTTGATGTATACAATAGAGGACCGCTACTGTATTATATAATGATTTAAGCTCTTCTGACCCTGTTTGGAGGGATGGCTGTAGCTGTCCCAGTATTTGTCTACAGCCTTCTGATGTTTCTAACAGGCCAGGATTAACTGCGAATCGTTCTAGCTCCCTGCTTGCCCATACTAGATGTTTTAACCTATATTTTTTCTTTCCTCCTGGCCTTAACCGAATTTTTTCCCATTGGTCTAATTTTCCCCCGCTTAATACTGACGCTCTCGCACCCATCTCTCTCCTTCTAGCCTCCGCTAGGTAAAAACTTTTTTGGCGTACTCACCAGTCGCCGAAGCAATGAGCCAAGTAAATTCAACTACCGTAATGATGCAGAAAGGCAATTTTAGGAACCAAAAGAAGACTGTTAAGTGTTTCAACTGTGGTAAAATAGGGCATATAGCAAAAAATTGCAGGGCCCCCAGGAGAAAGGGCTGTTGGAAATGTGGACAGGAAGGACACCAGATGAAAGATTGTAGTGAGAGACAGGCTAATTTTTTAGGGAAACTCTGGCCTTCCCACAAGGGGAGGCCAGGGAATTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAGGAGAGCTTCAGGTTTGGGGAAGAGACAGCAACTCCCCCTCAGAAGCAGGAGCCGATAGACAGGGAACTATATTCCTTAG +MK116110.1,pol,1393,4405,1435,4447,forward,0.2409491492322341,FFRETLAFPQGEAREFPSEQTRANSPTRGELQVWGRDSNSPSEAGADRQGTIFLSFPQITLWQRPLVSIKVGGQLKEALLDTGADDTVLEEMCLPGKWKPKMIGGIGGFIKVRQYDQIPIEIYGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVRLKPGMDGPKIKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPIFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRKQNPDMVIYQYMDDLYIGSDLELGQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPITLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKSLTEVVPLTREAELELAENREILKEPVHGVYYDPSKDLIAELQKQGQGQWTYQIYQEPFKNLKTGKYARIKGTHTNDVKQLTQAVQKIATESIVIWGKTPKFRLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKDPIVGAETFYVDGAANRDTKLGKAGYVTDRGRQKIVPLTDTTNQKTELQAIYLALQDSGSEVNIVSDSQYAIGILQAQPDKSESELVNQIIEQLIKKEKVYLTWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVNTIHTDNGSNFTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGRYSAGERIVDMIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSEIKVVPRRKAKIIRDYGKQMAGDDCVAGRQDED,FFRETLAFPQGEAREFPSEQTRANSPTRGELQVWGRDSNSPSEAGADRQGTIFLSFPQITLWQRPLVSIKVGGQLKEALLDTGADDTVLEEMCLPGKWKPKMIGGIGGFIKVRQYDQIPIEIYGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVRLKPGMDGPKIKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPIFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRKQNPDMVIYQYMDDLYIGSDLELGQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPITLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKSLTEVVPLTREAELELAENREILKEPVHGVYYDPSKDLIAELQKQGQGQWTYQIYQEPFKNLKTGKYARIKGTHTNDVKQLTQAVQKIATESIVIWGKTPKFRLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKDPIVGAETFYVDGAANRDTKLGKAGYVTDRGRQKIVPLTDTTNQKTELQAIYLALQDSGSEVNIVSDSQYAIGILQAQPDKSESELVNQIIEQLIKKEKVYLTWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVNTIHTDNGSNFTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGRYSAGERIVDMIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSEIKVVPRRKAKIIRDYGKQMAGDDCVAGRQDED*,TTTTTTAGGGAAACTCTGGCCTTCCCACAAGGGGAGGCCAGGGAATTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAGGAGAGCTTCAGGTTTGGGGAAGAGACAGCAACTCCCCCTCAGAAGCAGGAGCCGATAGACAGGGAACTATATTCCTTAGCTTCCCTCAAATCACTCTTTGGCAACGACCCCTCGTCTCAATAAAAGTAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGTGTTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAATATGATCAGATACCCATAGAAATCTATGGACATAAAGCTATAGGTACAGTGTTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATTTGTTGACTCAGATTGGGTGCACTTTAAATTTTCCCATTAGTCCTATCGAAACTGTACCAGTAAGATTAAAGCCAGGAATGGATGGCCCAAAAATTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAGATTTCAAAGATTGGGCCTGAAAATCCATACAATACTCCAATATTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGGGAACTTAATAAGAGAACTCAAGATTTCTGGGAAGTTCAATTGGGAATACCGCATCCCGCAGGATTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCATTAGATAAAGACTTTAGGAAGTATACTGCATTTACCATACCCAGTGTAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAGCTAGCATGACAAAAATTTTAGAGCCTTTTAGGAAGCAAAATCCAGACATGGTTATTTATCAATACATGGATGATCTATATATAGGATCTGACTTGGAATTAGGACAGCATAGGACAAAAATAGAGGAACTGAGACAACATCTATTGAGGTGGGGGTTTACCACACCAGACAAGAAGCATCAGAAAGAACCTCCATTCCTCTGGATGGGGTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAACACTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTAGGAAAATTAAATTGGGCAAGTCAGATTTATGCAGGGATTAAAGTAAGGCAGTTATGTAAACTCCTTAGAGGAACCAAATCACTAACAGAAGTAGTACCACTAACAAGAGAGGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTCTAAAAGAACCGGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAATTACAAAAGCAGGGACAAGGCCAGTGGACTTATCAGATTTATCAAGAACCATTTAAAAATCTGAAAACAGGAAAGTATGCAAGAATAAAGGGTACCCACACTAATGATGTAAAACAATTAACACAGGCTGTGCAAAAAATAGCCACAGAAAGCATAGTAATATGGGGAAAAACTCCTAAATTTAGACTACCCATACAAAAAGAAACATGGGAAACATGGTGGACAGAGTATTGGCAAGCCACCTGGATCCCTGAGTGGGAGTTTGTTAATACCCCTCCCTTAGTAAAATTATGGTACCAGTTAGAGAAAGACCCCATAGTAGGAGCAGAAACATTCTATGTCGATGGGGCAGCCAATAGGGATACTAAATTAGGAAAAGCAGGATATGTTACTGACAGGGGAAGACAAAAAATTGTCCCCCTAACTGACACAACAAATCAGAAGACTGAGTTACAAGCAATTTACCTAGCTCTGCAGGATTCAGGATCAGAAGTAAACATAGTATCAGACTCACAGTATGCAATAGGAATTCTTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAATCAAATAATAGAGCAGTTAATAAAAAAGGAAAAAGTCTACCTGACATGGGTGCCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTGCTGGAATCAGGAAAGTATTATTCTTAGATGGAATAGATAAGGCCCAAGAAGAACATGAGAAATATCACAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCCATAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGTTAAAAGGAGAAGCCATACATGGACAAGTAGACTGTAGTCCAGGAATATGGCAACTAGATTGTACACATTTGGAAGGAAAAGTTATCCTGGTAGCAGTTCATGTGGCCAGTGGATATATTGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATATTTTATCTTAAAATTAGCAGGAAGATGGCCAGTAAACACAATACATACAGACAATGGCAGCAACTTCACTAGCACTGCGGTTAAAGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGGGATCAAGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGAGGTACAGTGCAGGGGAAAGAATAGTAGACATGATAGCATCAGACATACAAACTAAAGAATTACAAAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTCCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAACAGTGAAATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATCATTAGGGACTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAGGTAGACAGGATGAGGATTAA +MK116110.1,vif,4349,4928,4391,4970,forward,0.4686663095875737,MENRWQVMIVWQVDRMRINAWKSLVKHHMHVSRKVERWVYKHHYESTNPRISSEVHIPLGDARLKITTYWGLHTGERDWHLGQGVSIEWRKKSYNTQVDPEVADQLIHLYYFDCFSESAIRKAIVGHRVSPSCEYQAGHNKVGSLQYLALAALVKSKKTKPPLPSVTKLTEDRWNKPQRTKGRRGNHIMNGH,MENRWQVMIVWQVDRMRINAWKSLVKHHMHVSRKVERWVYKHHYESTNPRISSEVHIPLGDARLKITTYWGLHTGERDWHLGQGVSIEWRKKSYNTQVDPEVADQLIHLYYFDCFSESAIRKAIVGHRVSPSCEYQAGHNKVGSLQYLALAALVKSKKTKPPLPSVTKLTEDRWNKPQRTKGRRGNHIMNGH*,ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAGGTAGACAGGATGAGGATTAATGCATGGAAAAGCTTAGTAAAGCACCATATGCATGTTTCAAGGAAAGTTGAGAGATGGGTTTATAAACATCACTATGAAAGTACTAATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTAAAAATAACAACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCATTTGGGCCAGGGAGTCTCCATAGAATGGAGAAAAAAGAGCTATAATACACAAGTAGACCCTGAAGTAGCAGACCAACTAATCCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAAAGCCATAGTAGGACATAGAGTTAGTCCTAGTTGTGAATATCAAGCAGGACATAACAAGGTAGGATCCCTACAGTACTTGGCATTAGCAGCATTAGTAAAATCAAAAAAGACAAAGCCACCTTTGCCTAGCGTTACGAAGCTGACGGAGGATAGATGGAACAAGCCCCAGAGGACCAAGGGCCGCAGAGGGAACCATATAATGAATGGGCACTAG +MK116110.1,vpr,4867,5158,4909,5200,forward,0.4380664652567975,MEQAPEDQGPQREPYNEWALELLEELKREAVRHFPRIWLQSLGQYVYETYGDTWTGVEAIIRILQQMLFIHFRIGCQHSRIGIIRRGRTRNGASRP,MEQAPEDQGPQREPYNEWALELLEELKREAVRHFPRIWLQSLGQYVYETYGDTWTGVEAIIRILQQMLFIHFRIGCQHSRIGIIRRGRTRNGASRP*,ATGGAACAAGCCCCAGAGGACCAAGGGCCGCAGAGGGAACCATATAATGAATGGGCACTAGAGCTTTTAGAGGAGCTTAAGAGAGAAGCTGTTAGACATTTCCCTAGGATATGGCTTCAGAGCTTAGGACAATACGTCTATGAAACTTATGGGGATACTTGGACAGGAGTGGAAGCCATAATAAGAATTTTGCAACAAATGCTGTTCATTCATTTCAGAATTGGGTGTCAACATAGCAGAATAGGCATTATTCGACGAGGGAGAACAAGAAATGGAGCCAGTAGACCCTAG +MK116110.1,tat_exon1,5138,5357,5180,5395,forward,0.49638989169675096,MEPVDPSLAPWKHPGSQPKTACTNCYCKKCCLHCQVCFTKKGLGISYGRKKRRQRRRPPQSSKAHQNPLPKQ,MEPVDPSLAPWKHPGSQPKTACTNCYCKKCCLHCQVCFTKKGLGISYGRKKRRQRRRPPQSSKAHQNPLPKQ*,ATGGAGCCAGTAGACCCTAGCCTAGCGCCCTGGAAGCACCCAGGAAGTCAGCCTAAGACTGCTTGTACCAATTGCTATTGTAAAAAGTGCTGCTTACATTGCCAAGTTTGTTTCACAAAAAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGACCTCCTCAAAGCAGTAAGGCTCATCAAAATCCTCTACCAAAGCAGTAA +MK116110.1,rev_exon1,5277,5355,5319,5395,forward,0.48200514138817474,MAGRSGDSDEDLLKAVRLIKILYQSS,MAGRSGDSDEDLLKAVRLIKILYQSS,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGACCTCCTCAAAGCAGTAAGGCTCATCAAAATCCTCTACCAAAGCAGT +MK116110.1,vpu,5369,5615,5411,5657,forward,0.4370034052213393,MQSLQIGAIVALVVGTIIAIVVWSIVLIEYRKILRQKKIDRIIDRIVERAEDSGNESEGDQEELSALVERGHDAPWNVNDL,MQSLQIGAIVALVVGTIIAIVVWSIVLIEYRKILRQKKIDRIIDRIVERAEDSGNESEGDQEELSALVERGHDAPWNVNDL*,ATGCAATCTTTGCAAATAGGAGCAATAGTAGCATTAGTAGTAGGAACAATAATAGCAATAGTTGTGTGGTCTATAGTACTCATAGAATATAGGAAAATATTAAGACAAAAGAAAATAGATAGAATAATAGATAGAATAGTAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGAGACCAGGAAGAGTTATCAGCACTGGTGGAAAGGGGGCATGATGCTCCTTGGAATGTTAATGATCTGTAG +MK116110.1,env,5532,8073,5574,8124,forward,0.4589466326782341,MRVKETRKSYQHWWKGGMMLLGMLMICSAATNLWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVLLGNVTEDFNAWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVILHCTDVNNTRNGMTGELKNCSFNITTKITNKVQKEYALFYKLDVVPINNKDNDTSFNNNSYRLISCNTSVITQACPKVSFEPIPIHYCTPAGYAILRCNNETFSGKGPCTNVSSIQCTHGIRPVVSTQLLLNGSLAKQEVVIRSQNFSDNVKTIIVQLKTPVKINCTRPNNNTRKSIHAGPGKVIYATGEIIGDIRQAHCNISAAEWNDTLGQIVTKLQEQFGNKTIVFNQSSGGDPEIVTHSFNCGGEFFYCNSTQLFNSTWNNNGTNTWNSTGNITLPCKIRQIVNMWQKVGKAMYAPPIRGQIKCSSNITGLLLTRDGGNESESETFRPGGGDMRDNWRSELYKYKVVRIEPLGLAPTKAKRRVVQREKRAIGTLGAVFLGFLGTAGSTMGAASMTLTVQARQLLSGIVQQQNNLLKAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQLLGIWGCSGKLICTTAVPWNASWSNKSLNEIWDNMTWMEWEKEISNYTQLIYTLIEESQSQQEKNEQELLALDKWDSLWSWFSITKWLWYIKIFIMIVGGLIGLRIVFTVLSIVNRVRQGYSPLSFQTRFPAPRGPDRPEGIEEDGGERDRDRSTRLVTGFLPLFWDDLRSLCLFSYHRLRDLLLIAARIVELLGHRGWEILKHWWSLLQYWSQELKKSAVSLLNATAIAVAEGTDRIIEVVQRACRAILHIPVRLRQGLERALL,MRVKETRKSYQHWWKGGMMLLGMLMICSAATNLWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVLLGNVTEDFNAWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVILHCTDVNNTRNGMTGELKNCSFNITTKITNKVQKEYALFYKLDVVPINNKDNDTSFNNNSYRLISCNTSVITQACPKVSFEPIPIHYCTPAGYAILRCNNETFSGKGPCTNVSSIQCTHGIRPVVSTQLLLNGSLAKQEVVIRSQNFSDNVKTIIVQLKTPVKINCTRPNNNTRKSIHAGPGKVIYATGEIIGDIRQAHCNISAAEWNDTLGQIVTKLQEQFGNKTIVFNQSSGGDPEIVTHSFNCGGEFFYCNSTQLFNSTWNNNGTNTWNSTGNITLPCKIRQIVNMWQKVGKAMYAPPIRGQIKCSSNITGLLLTRDGGNESESETFRPGGGDMRDNWRSELYKYKVVRIEPLGLAPTKAKRRVVQREKRAIGTLGAVFLGFLGTAGSTMGAASMTLTVQARQLLSGIVQQQNNLLKAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQLLGIWGCSGKLICTTAVPWNASWSNKSLNEIWDNMTWMEWEKEISNYTQLIYTLIEESQSQQEKNEQELLALDKWDSLWSWFSITKWLWYIKIFIMIVGGLIGLRIVFTVLSIVNRVRQGYSPLSFQTRFPAPRGPDRPEGIEEDGGERDRDRSTRLVTGFLPLFWDDLRSLCLFSYHRLRDLLLIAARIVELLGHRGWEILKHWWSLLQYWSQELKKSAVSLLNATAIAVAEGTDRIIEVVQRACRAILHIPVRLRQGLERALL*,ATGAGAGTGAAGGAGACCAGGAAGAGTTATCAGCACTGGTGGAAAGGGGGCATGATGCTCCTTGGAATGTTAATGATCTGTAGTGCTGCAACAAATTTGTGGGTCACAGTCTATTATGGGGTACCTGTATGGAAGGAAGCAACCACCACTCTATTTTGTGCATCAGATGCTAAAGCATATGATACAGAGGTACATAATGTTTGGGCCACGCATGCCTGTGTACCCACGGACCCCAACCCACAAGAAGTATTATTGGGAAATGTGACAGAAGATTTTAATGCATGGAAAAATAACATGGTAGAGCAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGCTTAAAGCCATGTGTAAAATTAACCCCACTTTGTGTTATTTTGCATTGCACTGATGTCAACAATACTAGAAATGGGATGACAGGAGAACTAAAAAACTGCTCTTTCAATATCACCACAAAAATAACAAATAAGGTACAGAAAGAATATGCACTCTTTTATAAACTTGATGTAGTACCAATAAATAATAAGGATAATGATACTAGCTTTAATAATAATAGCTATAGGTTGATAAGTTGTAACACCTCAGTTATTACACAGGCTTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTACTGTACCCCGGCTGGTTATGCAATTCTAAGGTGTAACAATGAGACATTCAGTGGAAAAGGGCCATGTACAAATGTCAGCTCAATACAATGTACACATGGAATTAGGCCAGTAGTGTCAACTCAACTGCTGTTAAATGGCAGTCTAGCAAAACAGGAGGTAGTAATTAGATCTCAAAATTTCTCGGACAATGTTAAAACCATAATAGTACAGCTGAAGACCCCTGTAAAAATTAACTGTACAAGGCCCAATAACAATACAAGAAAAAGTATACATGCAGGACCAGGGAAAGTAATTTATGCAACAGGAGAAATAATAGGAGATATAAGACAAGCACATTGCAACATTAGTGCAGCAGAGTGGAATGATACTTTAGGACAGATAGTTACAAAATTACAAGAACAATTTGGGAATAAAACAATAGTCTTCAATCAATCGTCAGGAGGGGACCCAGAAATTGTAACACACAGTTTTAATTGTGGAGGGGAATTTTTTTACTGTAATTCAACACAACTGTTTAATAGTACTTGGAATAATAATGGTACTAATACTTGGAATAGTACAGGTAATATCACACTCCCATGTAAAATAAGGCAAATTGTAAACATGTGGCAGAAAGTAGGAAAAGCAATGTATGCTCCTCCCATCCGTGGACAAATTAAATGTTCATCAAATATTACAGGGCTGCTATTAACAAGAGATGGTGGTAACGAGAGTGAGAGCGAAACCTTCAGACCTGGCGGAGGAGATATGAGGGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAGAATTGAACCATTAGGACTAGCACCCACTAAGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAATAGGAACACTGGGAGCTGTGTTCCTTGGGTTCTTGGGAACAGCAGGAAGCACTATGGGCGCAGCGTCAATGACGCTGACGGTACAGGCCAGGCAATTATTGTCTGGTATAGTGCAGCAGCAGAACAATCTGCTGAAGGCTATTGAGGCGCAACAGCATCTGTTGCAACTCACAGTCTGGGGCATTAAACAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTACAGGATCAACAGCTCCTGGGGATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCTTGGAATGCTAGTTGGAGCAATAAATCTCTGAATGAAATTTGGGATAACATGACCTGGATGGAGTGGGAAAAAGAAATTAGTAATTACACACAATTAATATACACTTTAATTGAAGAATCGCAGAGCCAGCAAGAAAAGAATGAACAAGAATTATTGGCACTAGATAAGTGGGACAGCTTGTGGAGTTGGTTTAGTATAACAAAATGGCTGTGGTATATAAAAATATTCATAATGATAGTAGGAGGCTTAATAGGGTTAAGAATAGTTTTTACTGTACTTTCTATAGTAAATAGAGTTAGGCAGGGATATTCACCATTGTCATTTCAGACCCGCTTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGACGGTGGAGAGAGAGACAGAGACAGATCCACACGCTTAGTAACCGGATTCTTACCACTTTTCTGGGACGACCTGAGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGCAGCGAGGATTGTGGAACTTCTGGGACACAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTACAATATTGGAGTCAGGAACTAAAAAAAAGTGCTGTTAGCTTGCTCAATGCCACAGCTATAGCAGTAGCTGAGGGGACAGATAGGATTATAGAAGTAGTACAAAGAGCTTGTAGAGCTATTCTCCACATACCTGTAAGACTAAGACAAGGCTTAGAAAGAGCTTTGCTATAA +MK116110.1,tat_exon2,7654,7750,7705,7798,forward,0.4464285714285715,RPASQPRGDPTGPKESKKTVERETETDPHA,RPASQPRGDPTGPKESKKTVERETETDPHA**,AGACCCGCTTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGACGGTGGAGAGAGAGACAGAGACAGATCCACACGCTTAGTAA +MK116110.1,rev_exon2,7655,7940,7706,7982,forward,0.43759968102073354,DPLPSPEGTRQARRNRRRRWRERQRQIHTLSNRILTTFLGRPEEPVPLQLPPLERLTLDCSEDCGTSGTQGVGNPQTLVESPTILESGTKKKCC,DPLPSPEGTRQARRNRRRRWRERQRQIHTLSNRILTTFLGRPEEPVPLQLPPLERLTLDCSEDCGTSGTQGVGNPQTLVESPTILESGTKKKCC*,GACCCGCTTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGACGGTGGAGAGAGAGACAGAGACAGATCCACACGCTTAGTAACCGGATTCTTACCACTTTTCTGGGACGACCTGAGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGCAGCGAGGATTGTGGAACTTCTGGGACACAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTACAATATTGGAGTCAGGAACTAAAAAAAAGTGCTGTTAG +MK116110.1,nef,8074,8695,8125,8752,forward,0.429531982659471,MGGKWSKSSVVGWPAVRERIRRAGPAAEGVGAVSRDLDKHGAITSNNTPATNAACAWLEAQEEEEVGFPVRPQVPLRPMTYKGALDLSHFLKEKGGLEGMIYSQQRQDILDLWVYHTQGYFPDWQNYTPGPGVRFPLTFGWCFKLVPLETEQVEAATGGENNCLLHPLNQHGMDDPEREVLMWKFDSSLAFHHRAKELHPEYYKDC,MGGKWSKSSVVGWPAVRERIRRAGPAAEGVGAVSRDLDKHGAITSNNTPATNAACAWLEAQEEEEVGFPVRPQVPLRPMTYKGALDLSHFLKEKGGLEGMIYSQQRQDILDLWVYHTQGYFPDWQNYTPGPGVRFPLTFGWCFKLVPLETEQVEAATGGENNCLLHPLNQHGMDDPEREVLMWKFDSSLAFHHRAKELHPEYYKDC*,ATGGGTGGCAAGTGGTCAAAAAGTAGTGTGGTTGGATGGCCTGCTGTAAGGGAAAGAATAAGAAGAGCTGGGCCAGCAGCAGAAGGGGTGGGAGCAGTATCTCGAGACCTGGACAAACATGGAGCAATCACAAGTAACAATACACCAGCTACTAATGCTGCTTGTGCCTGGCTAGAAGCACAAGAGGAGGAGGAGGTGGGTTTTCCAGTTAGGCCTCAAGTACCTTTAAGACCAATGACTTACAAGGGAGCTTTGGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGATGATATACTCCCAGCAAAGACAAGATATCCTTGATCTGTGGGTCTACCACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGACCAGGGGTCAGGTTTCCACTGACCTTTGGATGGTGCTTCAAACTAGTACCACTTGAGACAGAGCAGGTAGAAGCGGCCACTGGAGGAGAGAACAACTGCTTGTTACACCCTTTGAACCAGCATGGGATGGATGACCCGGAGAGAGAAGTACTAATGTGGAAGTTTGACAGCAGCCTAGCATTTCATCACAGAGCCAAAGAGCTGCATCCGGAGTACTACAAAGACTGCTGA +MK115527.1,gag,683,2189,789,2292,forward,0.2932056543547651,MGARASILSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWTTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSANVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE,MGARASILSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWTTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSANVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE*R*,ATGGGTGCGAGAGCGTCAATATTAAGCGGGGGAAAATTAGATGCATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATTTAGTATGGGCAAGCAGGGAGCTAGAACGATTTGCCGTTAACCCTGGCCTGTTAGAAACATCAGAGGGATGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATTTAATGCAGTAGCAGTCCTCTATTGTGTACATCAAAGGATACAGGTACAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGTAGCAGCAGCTGACACTGACACAGGAAACAGCAGCCAAAATTACCCCATAGTGCAGAACCTCCAGGGGCAAATGGTACATCAGCCCCTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAAAAGGCCTTCAGCCCAGAAGTCATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGACGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCTTGGGATTAAATAAAATAGTAAGGATGTATAGCCCTACCAGTATTCTGGATATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAGAACTTTAAGAGCTGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATTCGAATCCAGATTGTAAGACTATTTTAAAAGCATTAGGACCAGCAGCAACACTAGAGGAAATGATGACAGCATGTCAAGGAGTGGGGGGACCAGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAAATTCAGCTAATGTAATGATGCAGAGAGGCAATTTTAGAAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACATCAAATGAAAGACTGTACAGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAG +MK115527.1,pol,1975,4987,2084,5096,forward,0.1922427454342348,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSTGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSTGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAGGGGGGCAATTTAAAGAAGCTTTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACCCATAGAAATCTGTGGACACAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGCTTGGTTGTACCTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTCAATAAGAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAATTCCCTTAGATAAAGAATTCAGGAAGTATACTGCATTTACCATACCTAGTACAAATAATGAGACACCAGGGATTAGGTATGAGTACAATGTGCTGCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGCAAAATCCAGATATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAACTGAGACAACATCTGTTAAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAGTGGACAGTACAGCCTATAATACTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTACGCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAGGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTTTAAGAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGCAATGGACAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTACAAAAGATAGCCACAGAAAGCATAGTAATATGGGGAAAAACTCCTAAATTTAGACTACCTATACAAAAAGAAACATGGGAGACATGGTGGGCAGAGTACTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAATTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACTAAATTAGGCAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAGGTTATCTCCCTAACGGACACAACAAATCAAAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATCAGAAGTAAACATAGTAACAGACTCACAATATACATTAGGAATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAATCAGATAATAGAGCAGTTAATAAAAAAGGAAAAAGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGACAAACTAGTCAGTACTGGAGTCAGGAGAGTACTATTTCTAGATGGAATAGATAAGGCCCAAGAAGACCATGAGAAATATCACAGTAATTGGAGAGCAATGGCTGGTGATTTTAATATACCCCCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCAAAAAGGAGAGGCCATGCATGGACAAGTAGATTGTAGTCCAGGAATATGGCAACTAGATTGTACACATCTAGAAGGGAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTCTCCTGAAACTAGCAGGGAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTAATGTGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCCATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTATAGTGCAGGGGAAAGAATAGTAGATATAATAGCAACAGACCTACAAACTAAAGAATTACAGAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGGAGAAAAGCAAAAATCATTAGGGATTATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG +MK115527.1,vif,4931,5510,5040,5619,forward,0.36355859709153127,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH*,ATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATGTTTCAAAGAAAACTAAAGGATGGTTTTATAGACATCACTATGAAAGCACTCATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTGGTAGTAACAACATATTGGGGCCTGAATACAGGAGAAAGAGAATGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGAAAAAGGAAATATAGCACACAAGTTGACCCTAACCTAGCAGACCAACTAATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACATATAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGCTCTCTACAATACTTGGCACTAAAAGCATTAACAACACCAAAGAGAAGAAAGCCACCTTTACCTAGTGTTAGGAAACTGACAGAGGATAGATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAG +MK115527.1,vpr,5449,5743,5558,5850,forward,0.39444027047332864,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS*T,ATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAGAGCTTTTAGAGGAACTTAAGAATGAAGCGGTTAGACATTTTCCTAGGCCGTGGCTCCATGGCTTAGGACAACATATCTATGAAACTTATGGGGACACTTGGACAGGAGTGGAGGCCATAATAAGAACCCTGCAACAACTGCTGTTTATTCATTTCAGACTTGGGTGTCGACATAGCAGAATAGGCATTGTGCCACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACT +MK115527.1,tat_exon1,5720,5939,5830,6045,forward,0.31992687385740404,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ*,ATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCACCCAGGAAGTCAGCCTAAAACTCCTTGTACTAACTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAAAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGTAA +MK115527.1,rev_exon1,5859,5937,5969,6045,forward,0.48200514138817474,MAGRSGDSDEELLKAVRLIKILYQSS,MAGRSGDSDEELLKAVRLIKILYQSS,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGT +MK115527.1,vpu,5951,6197,6061,6310,forward,0.5254806794847863,MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAKDSGNESEGDQEELSALMEMGHHAPGDVDDL,MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAKDSGNESEGDQEELSALMEMGHHAPGDVDDL*,ATGCAACCTCTGCACATAGCAGCAATAGTAGGATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGACCATAGTGTTAATAGAATATAGGAAAATATTAAGACAAAAAAGGATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAAAAGACAGTGGCAATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAG +MK115527.1,env,6114,8655,6224,8795,forward,0.4421225244922844,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEAHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRNKMQKEYALFYKLDVVPIDNDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYENKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSETETFRPGGGDMKDNWRSELYKYKVEKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEAHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRNKMQKEYALFYKLDVVPIDNDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYENKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSETETFRPGGGDMKDNWRSELYKYKVEKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL*,ATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTGACAGTCTATTATGGGGTACCTGTATGGAAAGAAGCAAACACCACTCTATTTTGTGCATCGGATGCTAAAGCATATACCACAGAGGCACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGGATTGGAAAATGTGACAGAAAATTTTAACATGTGGAAAAATAACATGGTAGAACAGATGCATGAGGATGTAATCAATTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCACTAATCTGAATGTTACTAATACCAATAGCAGTAGTGAGGAGGGAAAGATGGCGGAAGAAATGAGAAACTGCTCTTTCAATATCACCACAAAAATAAGAAATAAGATGCAGAAGGAATATGCACTTTTTTATAAACTTGATGTAGTACCAATAGATAATGATAATACAAGTTATACATTGATAAATTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCTATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAGGATAAGAAGTTCAATGGATCAGGACCATGTAAAAATGTCAGCACAGTACAATGTACACATGGAATTAAGCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTTTAGCAGAAGAAGAGGTAGTAATTAGATCTGAAAATTTCACGAACAATGCTAAAACCATAATAGTACATCTGAAGGAACCTATACAAATTAATTGTACAAGACCCAACAACAATACAATGAAAAGTATCCCTCTAGGACCAGGAAGAGCATTCTATGCAACAGGAGCCATAATAGGAGATATAAGACAAGCACATTGTAACCTTAGTAGAAAAGCATGGAATAATACTTTAAAACAGGTAGTTGAAAAATTAAAAGAACAATATGAGAATAAAACAATAATCTTTAATCACTCCTCAGGAGGGGACCCAGAAATTATAATGCATACTTTTAATTGTGGAGGGGAATTTTTCTATTGTAATACAACACAGCTGTTTAATAGTACTTGGAATAGTACTTGGACTGGGAATGCTACCGAATTAGATGGAAACATCACACTCCCATGCAGAATAAAACAGATTATAAACAGGTGGCAAGAAGTAGGAAAAGCAATGTATGCCCCTCCCATTAGAGGAAAAATTAGATGTTCATCAAATATTACAGGGTTACTATTAGTAAGAGATGGTGGTAACACGAGCGAGACTGAGACCTTCAGACCTGGAGGAGGAGATATGAAGGACAATTGGAGGAGTGAATTATATAAATATAAAGTAGAAAAAATTGAGCCATTAGGAGTAGCACCCACCAGGGCAAAGAGAAGAGTGGTGCAAAGAGAAAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAAGCCAGGCTGTTATTGTCTGGTATAGTGCAACAGCAAAACAATTTGCTGAGAGCTATTGAGGCGCAACAACATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTACAGGATCAACAGCGCCTGGGAATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCCTGGAATGCTAGTTGGAGTAATAAATCTCTGAATCAGATTTGGGATAACATGACCTGGATGGAGTGGGAAAGAGAAATTAACAATTACACAGACACAATATACACCTTAATTGAAAAGGCGCAGAACCAGCAGGAAAAAAATGAACAAGAATTATTGGAATTGGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAAATGGCTGTGGTACATAAAATTATTCATAATGATAGTAGGAGGATTGATAGGTTTAAGAATAGTTTTTGCTGTACTTGCTATAGTAAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGCCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAGCTTATTCAATGTCACAGCCATCGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAAGAGCTTGTAGAGCTCTTCTCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCATTGTTATAA +MK115527.1,tat_exon2,8236,8332,8376,8469,forward,0.3161764705882347,RPTSQPRGDPTGPKESKKKVEKETETDQFD,RPTSQPRGDPTGPKESKKKVEKETETDQFD**,AGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGA +MK115527.1,rev_exon2,8237,8522,8377,8653,forward,0.38952607660679506,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVPLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVPLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE*CY*,GACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGCCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAG +MK115527.1,nef,8656,9277,8796,9417,forward,0.49848743916874616,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPMSLHGMEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPMSLHGMEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC*H*,ATGGGGGGCAAGTGGTCAAAAAGTAGTGGGGGTGGATGGCCTGCTGTAAGGGAAAGAATGAGACGAACTGAGCCAGCAGCAGAAGGGGTGGGAGCAGTATCTCGAGACCTGGAAAGACATGGAGCAGTCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGCGCCTGGCTGGAAGCACAAGAAGAGGACAGTGAAGTGGGTTTTCCAGTCAGACCTCAGGTGCCTTTAAGACCAATGACTTTCAAAGGAGCTCTCGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCCCAAAAAAGACAAGATATCCTTGACCTGTGGGTCTACAACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGACCAGATATCCACTGACCTTTGGGTGGTGTTTCAAGCTAGTACCAGTGGAGCCAGAAGAGGCCAATCAAGGAGAGAACAACTGCTTGTTACACCCTATGAGCCTGCATGGGATGGAGGACCCGGAAAAAGAAGTATTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCACATGGCCCGAGAGAAGCATCCGGAGTACTACAAAGACTGCTGACATTGA +MK114997.1,gag,210,1725,789,2292,forward,0.2704165686043777,MGARASVLSGGELDRWEKIYLRPGGKKKYRLKHIVWASRELERFAVNPGLLESSEGCRQILGQLQPSLQTGSEELRSLYNTVAVLYCVHQRINVKDTKEALDTIEEEQNKSKKKAQQAAADTGNSSNSQVSQNYPIVQNLQGQMVHQPISPSTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINDEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHTPPIPVGEIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFYKTLRAEQASQDVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSASIMAQGGNFRNQKRNVKCFNCGKEGHIARNCRAPRKKGCWKCGREGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPAESFRFGEEATAPPQKQETKDKELYPLASLRSLFGNDP,MGARASVLSGGELDRWEKIYLRPGGKKKYRLKHIVWASRELERFAVNPGLLESSEGCRQILGQLQPSLQTGSEELRSLYNTVAVLYCVHQRINVKDTKEALDTIEEEQNKSKKKAQQAAADTGNSSNSQVSQNYPIVQNLQGQMVHQPISPSTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINDEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHTPPIPVGEIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFYKTLRAEQASQDVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSASIMAQGGNFRNQKRNVKCFNCGKEGHIARNCRAPRKKGCWKCGREGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPAESFRFGEEATAPPQKQETKDKELYPLASLRSLFGNDP*YQ*E*,ATGGGTGCGAGAGCGTCAGTATTAAGCGGCGGAGAATTAGATAGATGGGAAAAAATTTACCTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTCAACCCTGGCCTGTTAGAGTCATCAGAAGGCTGCAGGCAAATTCTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAGATCATTATATAATACAGTAGCAGTCCTCTATTGCGTACATCAAAGGATAAATGTAAAAGACACCAAGGAAGCTCTAGACACAATAGAGGAAGAACAAAACAAAAGTAAGAAAAAGGCACAACAAGCAGCAGCTGACACAGGAAACAGCAGCAACAGCCAGGTCAGCCAAAATTACCCTATAGTGCAGAACCTACAGGGGCAAATGGTACATCAACCCATATCACCTAGCACTTTAAATGCATGGGTAAAAGTGATAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCACTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAGATGTTAAAAGAAACCATCAATGATGAGGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGCCCTATTGCACCAGGCCAGATGAGGGAACCAAGGGGAAGTGACATAGCAGGAACCACTAGTACCCTTCAGGAACAAATAGGATGGATGACACATACTCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCCTGGGGTTAAATAAAATAGTAAGAATGTATAGCCCTGTCAGCATTTTGGACATAAGACAAGGACCAAAGGAACCCTTTAGGGATTATGTAGATCGGTTCTATAAAACTCTAAGGGCTGAGCAAGCGTCACAGGATGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAACCCAGATTGTAAGACCATTTTAAAAGCATTAGGACCAGCAGCTACATTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGGGGACCCGGCCACAAGGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAACAAATTCAGCCTCCATAATGGCGCAAGGAGGCAATTTTAGGAACCAAAAAAGGAATGTTAAGTGTTTCAATTGTGGCAAAGAAGGACACATAGCCAGAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAGGGAAGGACACCAAATGAAAGATTGTACTGAGAGACAGGCTAATTTTTTAGGGAAGATTTGGCCTTCCCACAAGGGAAGGCCAGGGAATTTTCTCCAGAGCAGACCAGAGCCAACAGCCCCGCCAGCAGAGAGCTTCAGGTTTGGGGAAGAGGCAACAGCTCCCCCTCAGAAGCAGGAGACGAAGGACAAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCATAATATCAATAAGAATAG +MK114997.1,pol,1511,4601,2084,5096,forward,0.2613261112298957,FFREDLAFPQGKAREFSPEQTRANSPASRELQVWGRGNSSPSEAGDEGQGTVSFSFPQITLWQRPIISIRIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYDQVPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPRVKQWPLTEDKIKALIEICAEMEKEGKITKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKRKKSVTVLDVGDAYFSVPLDQDFRKYTAFTIPSINNEAPGVRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKENPDIVIYQYMDDLYVGSDLEIEQHRTKIEELRQHLLGWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPDKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTEVVPLTEEAELELAENREILKEPVHGAYYDPSKDLIAEVQKQGGDQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKIALEAIVIWGKTPKFKLPIQKETWEMWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIIGAETFYVDGAANRETKLGKAGYVTDRGRQKVVSLMDTTNQRTELHAIHLALQDSGSTVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHKGIGGNEQVDKLVSNGIRKILFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEPMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIAAETGQETAYFILKLAGRWPVKIIHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDSREPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKILRDYGKQMAGDDCVASRQDED,FFREDLAFPQGKAREFSPEQTRANSPASRELQVWGRGNSSPSEAGDEGQGTVSFSFPQITLWQRPIISIRIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYDQVPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPRVKQWPLTEDKIKALIEICAEMEKEGKITKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKRKKSVTVLDVGDAYFSVPLDQDFRKYTAFTIPSINNEAPGVRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKENPDIVIYQYMDDLYVGSDLEIEQHRTKIEELRQHLLGWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPDKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTEVVPLTEEAELELAENREILKEPVHGAYYDPSKDLIAEVQKQGGDQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKIALEAIVIWGKTPKFKLPIQKETWEMWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIIGAETFYVDGAANRETKLGKAGYVTDRGRQKVVSLMDTTNQRTELHAIHLALQDSGSTVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHKGIGGNEQVDKLVSNGIRKILFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEPMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIAAETGQETAYFILKLAGRWPVKIIHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDSREPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKILRDYGKQMAGDDCVASRQDED*NMEQFSKTPYAYFKESSEMGLQTSL*,TTTTTTAGGGAAGATTTGGCCTTCCCACAAGGGAAGGCCAGGGAATTTTCTCCAGAGCAGACCAGAGCCAACAGCCCCGCCAGCAGAGAGCTTCAGGTTTGGGGAAGAGGCAACAGCTCCCCCTCAGAAGCAGGAGACGAAGGACAAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCATAATATCAATAAGAATAGGAGGGCAACTAAAAGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAATTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGGTACCCATAGAAATTTGTGGACATAAAGCTATAGGTACAGTATTAATAGGACCTACACCAGTCAACATAATTGGAAGAAATCTGTTGACCCAGCTTGGTTGCACTTTAAATTTTCCCATCAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAGAGTTAAACAATGGCCATTGACAGAAGACAAAATAAAGGCATTAATAGAAATTTGTGCAGAAATGGAAAAGGAAGGGAAAATTACAAAAATTGGGCCTGAGAATCCATATAATACTCCAGTGTTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCCGAGAACTTAATAAGAGAACACAAGACTTCTGGGAAGTTCAACTAGGAATACCACATCCCGCAGGGTTAAAAAGGAAAAAATCAGTAACAGTACTAGATGTGGGTGATGCATATTTTTCAGTTCCTTTAGACCAAGACTTCAGAAAGTATACTGCATTTACCATACCCAGTATAAACAATGAGGCACCAGGAGTTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGGAAAATCCAGACATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGAGCAGCACAGAACAAAAATAGAGGAACTGAGACAACATCTGTTGGGGTGGGGACTCACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTTCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATACAGCTGCCAGACAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAGTTGAATTGGGCAAGCCAGATCTATCCAGGGATTAAAGTAAAGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAAGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAGATTCTAAAAGAACCAGTCCATGGAGCATATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGGGGAGACCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGGAAATATGCAAGAACGAGGGGTGCCCACACTAATGATGTAAAACAGTTAACAGAGGCAGTGCAAAAAATAGCCCTAGAAGCCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTACCTATACAAAAGGAAACATGGGAAATGTGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAATTTGTCAATACCCCTCCCTTAGTAAAATTATGGTACCAGTTAGAGAAAGAACCCATAATAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAGACTAAATTAGGAAAAGCAGGGTATGTTACGGACAGAGGAAGACAAAAGGTTGTCTCCCTAATGGACACAACAAATCAGAGGACTGAGTTACACGCAATTCATCTAGCTTTGCAGGATTCAGGATCAACAGTAAACATAGTAACAGACTCACAATATGCCTTAGGGATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAGTCAAATAATAGAGCAGCTAATAAAAAAGGAAAAGATTTACCTGGCATGGGTCCCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTAATGGAATCAGAAAAATACTATTTCTGGATGGAATAGATAAGGCCCAAGAAGAACATGAAAAATATCACAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAGTGTCAGTTAAAAGGAGAACCTATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAACTGGATTGTACACATTTAGAAGGAAAAATTATCCTGGTAGCAGTTCATGTAGCCAGTGGATACATAGAAGCAGAAGTTATTGCCGCAGAAACAGGGCAGGAAACAGCATACTTTATCTTAAAATTGGCAGGAAGATGGCCAGTAAAAATAATACATACAGACAATGGCAGCAATTTCACCAGCACTACGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGTATTCCCTACAATCCTCAAAGTCAAGGAGTAGTAGAATCTATGAATAATGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAATAGACATAATAGCAACAGACATACAAACTAAAGAACTACAAAAACAAATTTCAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGAACCACTTTGGAAAGGACCAGCAAAGCTCCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATCCTTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATATTTCAAAGAAAGCTCAGAGATGGGTTTACAGACATCACTATGA +MK114997.1,vif,4467,5046,5040,5619,forward,0.38012913976254936,MENRWQVMIVWQVDRMRIRTWNSLVKHHMHISKKAQRWVYRHHYESHNPKTSSEVHIPLGEARLVIKTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPSLADQLIHLYYFDCFSESAIRNAILGHRVSPRCEYQAGHNKVGSLQYLALTALITPKRRKPPLPSVTKLTEDRWNKSQRTKGHKGSHTMNGH,MENRWQVMIVWQVDRMRIRTWNSLVKHHMHISKKAQRWVYRHHYESHNPKTSSEVHIPLGEARLVIKTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPSLADQLIHLYYFDCFSESAIRNAILGHRVSPRCEYQAGHNKVGSLQYLALTALITPKRRKPPLPSVTKLTEDRWNKSQRTKGHKGSHTMNGH*,ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATATTTCAAAGAAAGCTCAGAGATGGGTTTACAGACATCACTATGAAAGCCATAATCCAAAAACAAGTTCAGAAGTACACATCCCATTAGGGGAAGCAAGATTGGTAATAAAAACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCATTTGGGCCAGGGAGTATCCATAGAATGGAGGAAAAGGAGATATAGCACACAAGTAGACCCTAGCCTGGCAGACCAACTAATTCACCTGTATTATTTTGATTGTTTTTCAGAATCTGCTATAAGGAATGCCATATTAGGACATAGAGTTAGCCCTAGGTGTGAATATCAGGCAGGACATAACAAGGTAGGATCCCTACAATACTTGGCATTAACAGCATTAATAACACCAAAAAGGAGAAAGCCACCCTTGCCCAGTGTTACAAAATTAACAGAGGACAGATGGAACAAGTCCCAGAGGACCAAGGGCCACAAAGGGAGCCATACAATGAATGGACATTAG +MK114997.1,vpr,4985,5279,5558,5850,forward,0.41636495293265796,MEQVPEDQGPQREPYNEWTLELLEELKSEAVRHFPRPWLHSLGQYIYETYGDTWAGVEAIIRILQQLLFIHFRIGCQHSRIGIIRQRRARNGASRS,MEQVPEDQGPQREPYNEWTLELLEELKSEAVRHFPRPWLHSLGQYIYETYGDTWAGVEAIIRILQQLLFIHFRIGCQHSRIGIIRQRRARNGASRS*L,ATGGAACAAGTCCCAGAGGACCAAGGGCCACAAAGGGAGCCATACAATGAATGGACATTAGAGCTCTTAGAAGAGCTTAAGAGTGAAGCTGTTAGGCATTTTCCTAGACCATGGCTTCATAGCTTAGGACAATATATCTATGAAACTTATGGAGATACTTGGGCAGGGGTGGAAGCCATAATAAGAATCCTGCAACAACTGTTGTTCATTCATTTCAGAATTGGGTGTCAACATAGCAGGATAGGAATTATTCGACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGCTT +MK114997.1,tat_exon1,5256,5472,5830,6045,forward,0.4787482484820177,MEPVDPSLEPWKHPGSQPMTACNNCYCKRCCFHCQVCFTTKGLGISYGRKKRRQRRRASHSSQNHQAALPEQ,MEPVDPSLEPWKHPGSQPMTACNNCYCKRCCFHCQVCFTTKGLGISYGRKKRRQRRRASHSSQNHQAALPEQ,ATGGAGCCAGTAGATCCTAGCTTAGAGCCCTGGAAACATCCAGGAAGTCAACCTATGACTGCTTGTAACAATTGCTATTGTAAACGGTGTTGCTTTCATTGCCAAGTTTGCTTCACCACAAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTTCTCACAGCAGTCAGAATCATCAAGCGGCTCTACCAGAGCAG +MK114997.1,rev_exon1,5395,5473,5969,6045,forward,0.5132850241545894,MAGRSGDSDEELLTAVRIIKRLYQSS,MAGRSGDSDEELLTAVRIIKRLYQSS,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTTCTCACAGCAGTCAGAATCATCAAGCGGCTCTACCAGAGCAGT +MK114997.1,vpu,5487,5733,6061,6310,forward,0.5478477410174315,MHALKIAAIVGLVVATIIAIVVWSIVLIEYRKILRQRKIDRLIDRIRERAEDSGNESDGDQEELSALVEMGHLVPWDGDDM,MHALKIAAIVGLVVATIIAIVVWSIVLIEYRKILRQRKIDRLIDRIRERAEDSGNESDGDQEELSALVEMGHLVPWDGDDM*,ATGCATGCCTTAAAAATAGCAGCAATAGTAGGATTAGTAGTAGCAACAATAATAGCAATAGTTGTGTGGTCTATAGTATTAATAGAATATAGGAAAATTTTAAGACAAAGGAAAATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAAAGTGACGGAGACCAGGAGGAATTATCAGCACTTGTGGAGATGGGGCATCTTGTTCCTTGGGATGGTGATGATATGTAG +MK114997.1,env,5762,8216,6224,8795,forward,0.6642330224848478,MHSFNCGGEFFYCNTTQLFNSTWNGTDNWNGTESNNTITLPCRIKQIINLWQEVGRAMYAPPIQGQIRCSSNITGLLLVRDGGSNNSSNDTETFRPGGGDMRDNWRSELYKYKVVKIEPLGIAPTHAKRRVVQREKRAVGLGAFFLGFLGAAGSTMGAASVTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLALERYLKDQQLLGIWGCSGKLICTTNVPWNISWSPRWNRSLDEIWTNMTWRQWEKEIDNYTDTIYNLIELSQNQQEQNEQDLLALDKWASLWSWFDITQWLWYIKIFIMIVGGLIGLRIVFTILSIVNRVRQGYSPLSLQTLLPTQRGPDRPEGTEEGGGERDRGTSTRLVHGFLALIWDDLRSLFLFSYHRLRDLLLIAARIVELLGRRGWEALKYWWNLLQYWSQEIKNSAVSLLNTTAIAVAEGTDRIIEVLQRGFRAILHIPTRIRQGLERALL,MGYLYGKKQLPLYFVHQMLKHMRQRSIMFGQPMPVYPQTPAHRK*H*KM*QKHLTCGKMTW*SRCMRI*SVYGIKA*SHV*N*PHSVLL*IALIV*VIILIII*RKKEK*KTALSMSPQE*EIG*QKNMHFSIDLM*YQ*MKIVEILRANIG**IVTPQSLHKPVQRYPLSQFPYIFVPRLVLRF*SVEIRNSMEQENVEMSAQYNVHMELGQ*YQLNCC*TAV*QKKR**LDLPISRTMLKP**YS*INL*KLIVQDPTIIQEEVYT*DQGEHFMEQT**GI*DKRIVTLVGKIGMTL*KKIVIKLKEKFENKTIVFNQSSGGDPEIVMHSFNCGGEFFYCNTTQLFNSTWNGTDNWNGTESNNTITLPCRIKQIINLWQEVGRAMYAPPIQGQIRCSSNITGLLLVRDGGSNNSSNDTETFRPGGGDMRDNWRSELYKYKVVKIEPLGIAPTHAKRRVVQREKRAVGLGAFFLGFLGAAGSTMGAASVTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLALERYLKDQQLLGIWGCSGKLICTTNVPWNISWSPRWNRSLDEIWTNMTWRQWEKEIDNYTDTIYNLIELSQNQQEQNEQDLLALDKWASLWSWFDITQWLWYIKIFIMIVGGLIGLRIVFTILSIVNRVRQGYSPLSLQTLLPTQRGPDRPEGTEEGGGERDRGTSTRLVHGFLALIWDDLRSLFLFSYHRLRDLLLIAARIVELLGRRGWEALKYWWNLLQYWSQEIKNSAVSLLNTTAIAVAEGTDRIIEVLQRGFRAILHIPTRIRQGLERALL*DG*,ATGGGGTACCTGTATGGAAAGAAGCAACTACCACTCTATTTTGTGCATCAGATGCTAAAGCATATGAGACAGAGAAGCATAATGTTTGGGCAACCCATGCCTGTGTACCCACAGACCCCAGCCCACAGGAAGTAGCATTGAAAAATGTGACAGAAACATTTAACATGTGGAAAAATGACATGGTAGAGCAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGCCTAAAGCCATGTGTGAAACTAACCCCACTCTGTGTTACTTTAAATTGCACTGATAGTTTAAGTAATAATACTAATTATAATATAACGGAAAAAGGAGAAATAAAAAACTGCTCTTTCAATGTCACCACAGGAATAAGAGATAGGGTGACAAAAGAACATGCACTTTTCTATAGACTTGATGTAGTATCAATAGATGAAGATAGTGGAAATACTACGGGCAAATATAGGATGATAAATTGTAACACCTCAGTCATTACACAAGCCTGTCCAAAGATATCCTTTGAGCCAATTCCCATACATTTTTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAGAGATAAGAAATTCAATGGAACAGGAGAATGTAGAAATGTCAGCACAGTACAATGTACACATGGAATTAGGCCAGTAGTATCAACTCAACTGCTGCTGAACGGCAGTCTAGCAGAAGAAGAGATAGTAATTAGATCTGCCAATCTCTCGAACAATGCTAAAACCATAATAGTACAGCTGAATAAACCTGTAAAAATTAATTGTACAAGACCCAACAATAATACAAGAAGAAGTATACACATAGGACCAGGGAGAGCATTTTATGGAACAGACATAATAGGGGATATAAGACAAGCGCATTGTAACATTAGTGGGAAAGATTGGAATGACACTTTAAAAAAAGATAGTTATAAAATTAAAAGAAAAATTTGAGAATAAAACAATAGTCTTTAATCAATCCTCAGGAGGGGACCCAGAGATAGTGATGCATAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAATACAACACAGCTGTTTAATAGTACTTGGAATGGTACTGATAATTGGAATGGTACTGAATCAAATAACACTATCACACTCCCATGCAGAATAAAACAAATTATAAACTTGTGGCAGGAAGTAGGAAGAGCAATGTATGCTCCTCCCATCCAAGGGCAAATTAGATGTTCATCAAATATTACAGGGCTGCTGCTAGTAAGAGATGGTGGGAGCAACAATAGTAGTAATGATACAGAGACATTCAGGCCTGGAGGAGGAGATATGAGGGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTCAAAATTGAACCATTAGGAATAGCACCCACCCATGCAAAGAGAAGAGTGGTGCAAAGGGAAAAAAGAGCAGTGGGACTTGGAGCTTTCTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAGCAGCAAAACAATTTGCTGAGAGCTATTGAGGCGCAACAGCATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTCTGGAAAGATACCTAAAGGATCAACAGCTCCTGGGGATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTAATGTGCCCTGGAATATTAGTTGGAGCCCTAGATGGAATAGATCTCTAGATGAGATTTGGACTAACATGACCTGGAGGCAGTGGGAAAAGGAAATTGACAATTACACAGACACAATATATAACTTAATTGAACTATCACAGAACCAACAAGAACAGAATGAACAAGACTTATTGGCATTAGATAAGTGGGCAAGTTTGTGGAGTTGGTTTGACATTACACAGTGGCTATGGTATATAAAAATATTCATAATGATAGTAGGAGGCTTGATAGGTTTAAGAATAGTTTTTACTATACTGTCTATAGTGAATAGAGTTAGGCAGGGATACTCACCATTGTCATTGCAGACCCTCCTCCCAACCCAGAGGGGACCCGACAGGCCCGAAGGAACAGAAGAAGGAGGTGGAGAGAGAGACAGAGGCACATCCACGAGATTAGTGCATGGATTCTTAGCACTCATCTGGGACGACCTGCGGAGCCTGTTCCTCTTCAGTTACCACCGCTTGAGAGACTTACTCTTGATTGCGGCGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCACTGAAGTATTGGTGGAATCTCCTGCAGTATTGGAGTCAGGAAATAAAGAATAGTGCAGTTAGCTTGCTCAACACCACAGCAATAGCAGTAGCTGAGGGGACAGATAGGATTATAGAAGTACTACAAAGAGGCTTTAGAGCTATTCTCCACATACCTACACGAATAAGACAGGGCTTAGAAAGGGCTTTGCTATAAGATGGGTAA +MK114997.1,tat_exon2,7788,7881,8376,8469,forward,0.439759036144578,RPSSQPRGDPTGPKEQKKEVERETEAHPRD,RPSSQPRGDPTGPKEQKKEVERETEAHPRD*,AGACCCTCCTCCCAACCCAGAGGGGACCCGACAGGCCCGAAGGAACAGAAGAAGGAGGTGGAGAGAGAGACAGAGGCACATCCACGAGATTAG +MK114997.1,rev_exon2,7789,8065,8377,8653,forward,0.40871934604904625,DPPPNPEGTRQARRNRRRRWRERQRHIHEISAWILSTHLGRPAEPVPLQLPPLERLTLDCGEDCGTSGTQGVGSTEVLVESPAVLESGNKE,DPPPNPEGTRQARRNRRRRWRERQRHIHEISAWILSTHLGRPAEPVPLQLPPLERLTLDCGEDCGTSGTQGVGSTEVLVESPAVLESGNKE*,GACCCTCCTCCCAACCCAGAGGGGACCCGACAGGCCCGAAGGAACAGAAGAAGGAGGTGGAGAGAGAGACAGAGGCACATCCACGAGATTAGTGCATGGATTCTTAGCACTCATCTGGGACGACCTGCGGAGCCTGTTCCTCTTCAGTTACCACCGCTTGAGAGACTTACTCTTGATTGCGGCGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCACTGAAGTATTGGTGGAATCTCCTGCAGTATTGGAGTCAGGAAATAAAGAATAG +MK114997.1,nef,8208,8856,8796,9417,forward,0.5621267799724368,MGNKLSRGLRAGWPAIRERMRRARPVREPEPAAAGVGAASRDLERHGALTSSNTAATNADVACLEAQQEEEEVGFPVRPQVPLRPMTFKGALDISHFLKEKGGLDGLIYSKRRQDILDLWLYNTQGYFPDWQNYTPGPGVRFPLCFGWCFKLVPVDPDKVEEASVGENNCLLSPENLHGMEDEHREVLQWRFDSRLAFHHMARELHPEYFKDC,MGNKLSRGLRAGWPAIRERMRRARPVREPEPAAAGVGAASRDLERHGALTSSNTAATNADVACLEAQQEEEEVGFPVRPQVPLRPMTFKGALDISHFLKEKGGLDGLIYSKRRQDILDLWLYNTQGYFPDWQNYTPGPGVRFPLCFGWCFKLVPVDPDKVEEASVGENNCLLSPENLHGMEDEHREVLQWRFDSRLAFHHMARELHPEYFKDC*H*,ATGGGTAACAAGTTGTCAAGAGGGCTCAGGGCTGGATGGCCTGCCATAAGGGAGAGAATGAGACGAGCTAGGCCAGTAAGAGAGCCAGAGCCAGCAGCAGCTGGGGTGGGAGCAGCATCTCGAGACCTGGAAAGACATGGAGCACTTACAAGTAGCAATACAGCAGCTACCAATGCTGATGTTGCCTGCCTGGAAGCACAACAGGAGGAGGAAGAGGTGGGTTTTCCAGTCAGACCTCAGGTACCTTTAAGGCCAATGACTTTCAAGGGAGCTCTAGATATTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGATGGGCTAATTTACTCCAAAAGAAGACAAGACATCCTTGATCTGTGGCTCTACAACACACAAGGCTACTTCCCTGACTGGCAGAACTACACACCAGGGCCAGGAGTCAGATTTCCACTGTGTTTTGGATGGTGCTTCAAGCTAGTACCAGTTGATCCAGATAAGGTAGAAGAGGCCAGTGTAGGAGAGAACAACTGCTTGTTAAGCCCCGAAAACCTTCATGGAATGGAGGACGAACACAGAGAAGTATTGCAGTGGAGGTTTGACAGTCGCCTAGCATTTCATCACATGGCCCGAGAGCTGCATCCGGAATATTTCAAGGACTGCTGACACTGA +MK115518.1,gag,739,2245,789,2292,forward,0.2932056543547651,MGARASILSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWTTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSANVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE,MGARASILSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWTTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSANVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE*R*,ATGGGTGCGAGAGCGTCAATATTAAGCGGGGGAAAATTAGATGCATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATTTAGTATGGGCAAGCAGGGAGCTAGAACGATTTGCCGTTAACCCTGGCCTGTTAGAAACATCAGAGGGATGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATTTAATGCAGTAGCAGTCCTCTATTGTGTACATCAAAGGATACAGGTACAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGTAGCAGCAGCTGACACTGACACAGGAAACAGCAGCCAAAATTACCCCATAGTGCAGAACCTCCAGGGGCAAATGGTACATCAGCCCCTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAAAAGGCCTTCAGCCCAGAAGTCATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGACGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCTTGGGATTAAATAAAATAGTAAGGATGTATAGCCCTACCAGTATTCTGGATATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAGAACTTTAAGAGCTGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATTCGAATCCAGATTGTAAGACTATTTTAAAAGCATTAGGACCAGCAGCAACACTAGAGGAAATGATGACAGCATGTCAAGGAGTGGGGGGACCAGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAAATTCAGCTAATGTAATGATGCAGAGAGGCAATTTTAGAAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACATCAAATGAAAGACTGTACAGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAG +MK115518.1,pol,2031,5043,2084,5096,forward,0.1922427454342348,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSTGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSTGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAGGGGGGCAATTTAAAGAAGCTTTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACCCATAGAAATCTGTGGACACAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGCTTGGTTGTACCTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTCAATAAGAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAATTCCCTTAGATAAAGAATTCAGGAAGTATACTGCATTTACCATACCTAGTACAAATAATGAGACACCAGGGATTAGGTATGAGTACAATGTGCTGCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGCAAAATCCAGATATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAACTGAGACAACATCTGTTAAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAGTGGACAGTACAGCCTATAATACTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTACGCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAGGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTTTAAGAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGCAATGGACAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTACAAAAGATAGCCACAGAAAGCATAGTAATATGGGGAAAAACTCCTAAATTTAGACTACCTATACAAAAAGAAACATGGGAGACATGGTGGGCAGAGTACTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAATTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACTAAATTAGGCAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAGGTTATCTCCCTAACGGACACAACAAATCAAAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATCAGAAGTAAACATAGTAACAGACTCACAATATACATTAGGAATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAATCAGATAATAGAGCAGTTAATAAAAAAGGAAAAAGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGACAAACTAGTCAGTACTGGAGTCAGGAGAGTACTATTTCTAGATGGAATAGATAAGGCCCAAGAAGACCATGAGAAATATCACAGTAATTGGAGAGCAATGGCTGGTGATTTTAATATACCCCCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCAAAAAGGAGAGGCCATGCATGGACAAGTAGATTGTAGTCCAGGAATATGGCAACTAGATTGTACACATCTAGAAGGGAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTCTCCTGAAACTAGCAGGGAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTAATGTGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCCATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTATAGTGCAGGGGAAAGAATAGTAGATATAATAGCAACAGACCTACAAACTAAAGAATTACAGAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGGAGAAAAGCAAAAATCATTAGGGATTATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG +MK115518.1,vif,4987,5566,5040,5619,forward,0.36355859709153127,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH*,ATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATGTTTCAAAGAAAACTAAAGGATGGTTTTATAGACATCACTATGAAAGCACTCATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTGGTAGTAACAACATATTGGGGCCTGAATACAGGAGAAAGAGAATGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGAAAAAGGAAATATAGCACACAAGTTGACCCTAACCTAGCAGACCAACTAATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACATATAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGCTCTCTACAATACTTGGCACTAAAAGCATTAACAACACCAAAGAGAAGAAAGCCACCTTTACCTAGTGTTAGGAAACTGACAGAGGATAGATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAG +MK115518.1,vpr,5505,5799,5558,5850,forward,0.39444027047332864,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS*T,ATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAGAGCTTTTAGAGGAACTTAAGAATGAAGCGGTTAGACATTTTCCTAGGCCGTGGCTCCATGGCTTAGGACAACATATCTATGAAACTTATGGGGACACTTGGACAGGAGTGGAGGCCATAATAAGAACCCTGCAACAACTGCTGTTTATTCATTTCAGACTTGGGTGTCGACATAGCAGAATAGGCATTGTGCCACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACT +MK115518.1,tat_exon1,5776,5995,5830,6045,forward,0.31992687385740404,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ*,ATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCACCCAGGAAGTCAGCCTAAAACTCCTTGTACTAACTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAAAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGTAA +MK115518.1,rev_exon1,5915,5996,5969,6045,forward,0.5058246474555488,MAGRSGDSDEELLKAVRLIKILYQSSK,MAGRSGDSDEELLKAVRLIKILYQSSK,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGTAAG +MK115518.1,vpu,6007,6253,6061,6310,forward,0.5254806794847863,MQPLHIAAIVGLIVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAEDSGNESEGDQEELSALMEMGHHAPGDVDDL,MQPLHIAAIVGLIVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAEDSGNESEGDQEELSALMEMGHHAPGDVDDL*,ATGCAACCTCTGCACATAGCAGCAATAGTAGGATTAATAGTAGCAGCAATAATAGCAATAGTTGTGTGGACCATAGTGTTAATAGAATATAGGAAAATATTAAGACAAAAAAGGATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAG +MK115518.1,env,6170,8711,6224,8795,forward,0.4415354827847462,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTPEAHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRNKMQKEYALFYKLDVVPIDNDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYENKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSETETFRPGGGDMKDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTPEAHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRNKMQKEYALFYKLDVVPIDNDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYENKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSETETFRPGGGDMKDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL*,ATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTGACAGTCTATTATGGGGTACCTGTATGGAAAGAAGCAAACACCACTCTATTTTGTGCATCGGATGCTAAAGCATATACCCCAGAGGCACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGGATTGGAAAATGTGACAGAAAATTTTAACATGTGGAAAAATAACATGGTAGAACAGATGCATGAGGATGTAATCAATTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCACTAATCTGAATGTTACTAATACCAATAGCAGTAGTGAGGAGGGAAAGATGGCGGAAGAAATGAGAAACTGCTCTTTCAATATCACCACAAAAATAAGAAATAAGATGCAGAAGGAATATGCACTTTTTTATAAACTTGATGTAGTACCAATAGATAATGATAATACAAGTTATACATTGATAAATTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCTATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAGGATAAGAAGTTCAATGGATCAGGACCATGTAAAAATGTCAGCACAGTACAATGTACACATGGAATTAAGCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTTTAGCAGAAGAAGAGGTAGTAATTAGATCTGAAAATTTCACGAACAATGCTAAAACCATAATAGTACATCTGAAGGAACCTATACAAATTAATTGTACAAGACCCAACAACAATACAATGAAAAGTATCCCTCTAGGACCAGGAAGAGCATTCTATGCAACAGGAGCCATAATAGGAGATATAAGACAAGCACATTGTAACCTTAGTAGAAAAGCATGGAATAATACTTTAAAACAGGTAGTTGAAAAATTAAAAGAACAATATGAGAATAAAACAATAATCTTTAATCACTCCTCAGGAGGGGACCCAGAAATTATAATGCATACTTTTAATTGTGGAGGGGAATTTTTCTATTGTAATACAACACAGCTGTTTAATAGTACTTGGAATAGTACTTGGACTGGGAATGCTACCGAATTAGATGGAAACATCACACTCCCATGCAGAATAAAACAGATTATAAACAGGTGGCAAGAAGTAGGAAAAGCAATGTATGCCCCTCCCATTAGAGGAAAAATTAGATGTTCATCAAATATTACAGGGTTACTATTAGTAAGAGATGGTGGTAACACGAGCGAGACTGAGACCTTCAGACCTGGAGGAGGAGATATGAAGGACAATTGGAGGAGTGAATTATATAAATATAAAGTAGTAAAAATTGAGCCATTAGGAGTAGCACCCACCAGGGCAAAGAGAAGAGTGGTGCAAAGAGAAAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAAGCCAGGCTGTTATTGTCTGGTATAGTGCAACAGCAAAACAATTTGCTGAGAGCTATTGAGGCGCAACAACATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTACAGGATCAACAGCGCCTGGGAATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCCTGGAATGCTAGTTGGAGTAATAAATCTCTGAATCAGATTTGGGATAACATGACCTGGATGGAGTGGGAAAGAGAAATTAACAATTACACAGACACAATATACACCTTAATTGAAAAGGCGCAGAACCAGCAGGAAAAGAATGAACAAGAATTATTGGAATTGGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAAATGGCTGTGGTACATAAAATTATTCATAATGATAGTAGGAGGATTGATAGGTTTAAGAATAGTTTTTGCTGTACTTGCTATAGTAAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGCCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAGCTTATTCAATGTCACAGCCATCGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAAGAGCTTGTAGAGCTCTTCTCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCATTGTTATAA +MK115518.1,tat_exon2,8292,8388,8376,8469,forward,0.3161764705882347,RPTSQPRGDPTGPKESKKKVEKETETDQFD,RPTSQPRGDPTGPKESKKKVEKETETDQFD**,AGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGA +MK115518.1,rev_exon2,8293,8578,8377,8653,forward,0.38952607660679506,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVPLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVPLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE*CY*,GACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGCCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAG +MK115518.1,nef,8712,9333,8796,9417,forward,0.49848743916874616,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPTSLHGMEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPTSLHGMEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC*H*,ATGGGGGGCAAGTGGTCAAAAAGTAGTGGGGGTGGATGGCCTGCTGTAAGGGAAAGAATGAGACGAACTGAGCCAGCAGCAGAAGGGGTGGGAGCAGTATCTCGAGACCTGGAAAGACATGGAGCAGTCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGCGCCTGGCTGGAAGCACAAGAAGAGGACAGTGAAGTGGGTTTTCCAGTCAGACCTCAGGTGCCTTTAAGACCAATGACTTTCAAAGGAGCTCTCGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCCCAAAAAAGACAAGATATCCTTGACCTGTGGGTCTACAACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGACCAGATATCCACTGACCTTTGGGTGGTGTTTCAAGCTAGTACCAGTGGAGCCAGAAGAGGCCAATCAAGGAGAGAACAACTGCTTGTTACACCCTACGAGCCTGCATGGGATGGAGGACCCGGAAAAAGAAGTATTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCACATGGCCCGAGAGAAGCATCCGGAGTACTACAAAGACTGCTGACATTGA +MK115065.1,gag,221,1736,789,2292,forward,0.28224125955082213,MGARASVLSGGELDRWEKIYLRPGGKKKYRLKHIVWASRELERFAVNPGLLESSEGCRQILGQLQPALQTGSEELRSLYNTVAVLYCVHPRINVKDTKEALDKIEEEQNKSKKKAQQAAADTGNSSNSQVSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINAEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHNPPIPVGDIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFYKTLRAEQASQDVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTKSASIMVQGGNFRNQRRNVKCFNCGKEGHTAKNCRAPRKKGCWKCGREGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPAESFRFGEEATAPPQKQETKDQELYPLASLRSLFGNDP,MGARASVLSGGELDRWEKIYLRPGGKKKYRLKHIVWASRELERFAVNPGLLESSEGCRQILGQLQPALQTGSEELRSLYNTVAVLYCVHPRINVKDTKEALDKIEEEQNKSKKKAQQAAADTGNSSNSQVSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINAEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHNPPIPVGDIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFYKTLRAEQASQDVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTKSASIMVQGGNFRNQRRNVKCFNCGKEGHTAKNCRAPRKKGCWKCGREGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPAESFRFGEEATAPPQKQETKDQELYPLASLRSLFGNDP*YQ*K*,ATGGGTGCGAGAGCGTCAGTATTAAGCGGCGGAGAATTAGATAGATGGGAAAAAATTTACCTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTCAACCCTGGCCTGTTAGAGTCATCAGAAGGCTGCAGGCAAATTCTGGGACAGCTACAACCAGCCCTTCAGACAGGATCAGAAGAACTTAGATCATTATATAATACAGTAGCAGTCCTCTATTGCGTACATCCAAGGATAAATGTAAAAGACACCAAAGAAGCTCTAGACAAAATAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAACAAGCAGCAGCTGACACAGGAAACAGCAGCAACAGCCAGGTCAGCCAAAATTACCCTATAGTGCAGAACCTACAGGGGCAAATGGTACATCAACCCTTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAATAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCACTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAGATGTTAAAAGAAACCATCAATGCTGAGGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGCCCTATTGCACCAGGCCAGATGAGGGAACCAAGGGGAAGTGACATAGCAGGAACCACTAGTACCCTTCAGGAACAAATAGGATGGATGACACATAATCCACCTATCCCAGTAGGAGATATCTATAAAAGATGGATAATCCTGGGGTTAAATAAAATAGTAAGAATGTATAGCCCTGTCAGCATTTTGGACATAAGACAAGGACCAAAGGAACCCTTTAGGGATTATGTAGACCGGTTCTATAAAACTCTAAGGGCTGAGCAAGCGTCACAGGATGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAATCCAGATTGTAAGACCATTTTAAAAGCATTAGGACCAGCAGCTACATTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGGGGACCCGGCCACAAGGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAACAAAATCAGCCTCCATAATGGTGCAGGGAGGCAATTTTAGGAACCAAAGAAGGAATGTTAAGTGTTTCAATTGTGGCAAAGAAGGACACACAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAGGGAAGGACACCAAATGAAAGATTGTACTGAGAGACAGGCTAATTTTTTAGGGAAGATTTGGCCTTCCCACAAGGGAAGGCCAGGGAATTTTCTCCAGAGCAGACCAGAGCCAACAGCCCCGCCAGCAGAGAGCTTCAGGTTTGGGGAAGAGGCAACAGCTCCCCCTCAGAAGCAGGAGACGAAGGACCAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCATAATATCAATAAAAATAG +MK115065.1,pol,1522,4534,2084,5096,forward,0.24792588830031692,FFREDLAFPQGKAREFSPEQTRANSPASRELQVWGRGNSSPSEAGDEGPGTVSFSFPQITLWQRPIISIKIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPRVKQWPLTEEKIKALIEICAEMEKEGKITKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNEAPGVRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKENPDIVIYQYMDDLYVGSDLEIEQHRTKIEELRQHLLGWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPDKDSWTINDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTEVVPLTEEAELELAENREILKEPVHGAYYDPSKDLIAEVQKQGGDQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKIALEAIVIWGKTPKFKLPIQKETWEMWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVVSLMDTTNQRTELHAIHLALQDSGSTVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHKGIGGNEQVDKLVSSGIRKVLFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEPMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIAAETGQETAYFILKLAGRWPVKIIHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDSREPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKILRDYGKQMAGDDCVASRQDED,FFREDLAFPQGKAREFSPEQTRANSPASRELQVWGRGNSSPSEAGDEGPGTVSFSFPQITLWQRPIISIKIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPRVKQWPLTEEKIKALIEICAEMEKEGKITKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNEAPGVRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKENPDIVIYQYMDDLYVGSDLEIEQHRTKIEELRQHLLGWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPDKDSWTINDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTEVVPLTEEAELELAENREILKEPVHGAYYDPSKDLIAEVQKQGGDQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKIALEAIVIWGKTPKFKLPIQKETWEMWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVVSLMDTTNQRTELHAIHLALQDSGSTVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHKGIGGNEQVDKLVSSGIRKVLFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEPMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIAAETGQETAYFILKLAGRWPVKIIHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDSREPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKILRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAGATTTGGCCTTCCCACAAGGGAAGGCCAGGGAATTTTCTCCAGAGCAGACCAGAGCCAACAGCCCCGCCAGCAGAGAGCTTCAGGTTTGGGGAAGAGGCAACAGCTCCCCCTCAGAAGCAGGAGACGAAGGACCAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCATAATATCAATAAAAATAGGAGGGCAACTAAAAGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAATTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACCCATAGAAATTTGTGGACATAAAGCTATAGGTACAGTATTAATAGGACCTACACCAGTCAACATAATTGGAAGAAATCTGTTGACCCAGCTTGGTTGCACTTTAAATTTTCCCATCAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAGAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAGGCATTAATAGAAATTTGTGCAGAAATGGAAAAGGAAGGGAAAATTACAAAAATTGGGCCTGAGAATCCATATAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCCGAGAACTTAATAAGAGAACACAAGACTTCTGGGAAGTTCAACTAGGAATACCACATCCCGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTAGATGTGGGTGATGCATATTTTTCAGTTCCTTTAGACAAAGACTTCAGAAAGTATACTGCATTTACCATACCCAGTATAAACAATGAGGCACCAGGAGTTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGGAAAATCCAGACATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGATTTAGAAATAGAGCAGCACAGAACAAAAATAGAGGAACTGAGACAACATCTGTTGGGGTGGGGACTCACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTTCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATACAGCTGCCAGACAAAGACAGCTGGACTATCAATGACATACAGAAGTTAGTGGGAAAGTTGAATTGGGCAAGCCAAATCTATCCAGGGATTAAAGTAAAGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAAGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAGATTCTAAAAGAACCAGTACATGGAGCATATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGGGGAGACCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGGAAATATGCAAGAACGAGGGGTGCCCACACTAATGATGTAAAACAGTTAACAGAGGCAGTGCAAAAAATAGCCCTAGAAGCCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTACCTATACAAAAGGAAACATGGGAAATGTGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAATTTGTCAATACCCCTCCCTTAGTAAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAGACTAAATTAGGAAAAGCAGGGTATGTTACGGACAGAGGAAGACAAAAGGTTGTCTCCCTAATGGACACAACAAATCAGAGGACTGAGTTACACGCTATTCATCTAGCTTTGCAGGATTCAGGATCAACAGTAAACATAGTGACAGACTCACAATATGCCTTAGGGATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAGTCAAATAATAGAGCAGCTAATAAAAAAGGAAAAGATTTACCTGGCATGGGTCCCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTAGTGGAATCAGAAAAGTACTATTTCTGGATGGAATAGATAAGGCCCAAGAAGAACATGAAAAATATCACAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAGTGTCAGTTAAAAGGAGAACCTATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAACTGGATTGTACACATTTAGAAGGAAAAATTATCCTGGTAGCAGTTCATGTAGCCAGTGGATACATAGAAGCAGAAGTTATTGCAGCAGAAACAGGGCAGGAAACAGCATACTTTATCTTAAAATTGGCAGGAAGATGGCCAGTAAAAATAATACATACAGACAATGGCAGCAATTTCACCAGCACTACGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGTATTCCCTACAATCCTCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAATAGACATAATAGCAACAGACATACAAACTAAAGAACTACAAAAACAAATTTCAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGAACCACTTTGGAAAGGACCAGCAAAGCTCCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATCCTTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG +MK115065.1,vif,4478,5057,5040,5619,forward,0.38012913976254936,MENRWQVMIVWQVDRMRIRTWNSLVKHHMHISKKAQRWVYRHHYESHNPKTSSEVHIPLGEARLVIKTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPGLADQLIHLYYFDCFSESAIRNAILGHRVSPRCEYQAGHNKVGSLQYLALTALITPKRRKPPLPSVTKLTEDRWNKSQRTKGHKGSHTMNGH,MENRWQVMIVWQVDRMRIRTWNSLVKHHMHISKKAQRWVYRHHYESHNPKTSSEVHIPLGEARLVIKTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPGLADQLIHLYYFDCFSESAIRNAILGHRVSPRCEYQAGHNKVGSLQYLALTALITPKRRKPPLPSVTKLTEDRWNKSQRTKGHKGSHTMNGH*,ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATATTTCAAAGAAAGCTCAGAGATGGGTTTACAGACATCACTATGAAAGCCATAATCCAAAAACAAGTTCAGAAGTACACATCCCATTAGGGGAAGCAAGATTGGTAATAAAAACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCATTTGGGCCAGGGAGTATCCATAGAATGGAGGAAAAGGAGATATAGCACACAAGTAGACCCTGGCCTGGCAGACCAACTAATTCACCTGTATTATTTTGATTGTTTTTCAGAATCTGCTATAAGGAATGCCATATTAGGACATAGAGTTAGTCCTAGGTGTGAATATCAGGCAGGACATAACAAGGTAGGATCCCTACAATACTTGGCATTAACAGCATTAATAACACCAAAAAGGAGAAAGCCACCTTTGCCCAGTGTTACAAAATTAACAGAGGACAGATGGAACAAGTCCCAGAGGACCAAGGGCCACAAAGGGAGCCATACAATGAATGGACATTAG +MK115065.1,vpr,4996,5290,5558,5850,forward,0.43675751222921066,MEQVPEDQGPQREPYNEWTLELLEELKSEAVRHFPRPWLHSLGQYIYETYGDTWAGVEAIIRTLQQLLFIHFRIGCQHSRIGIIRQRRARNGASRS,MEQVPEDQGPQREPYNEWTLELLEELKSEAVRHFPRPWLHSLGQYIYETYGDTWAGVEAIIRTLQQLLFIHFRIGCQHSRIGIIRQRRARNGASRS*L,ATGGAACAAGTCCCAGAGGACCAAGGGCCACAAAGGGAGCCATACAATGAATGGACATTAGAGCTCTTAGAAGAACTTAAGAGTGAAGCTGTTAGGCATTTTCCTAGACCATGGCTTCATAGCTTAGGACAATATATCTATGAAACTTATGGAGATACTTGGGCAGGGGTGGAAGCCATAATAAGAACCCTGCAACAACTGTTGTTCATTCATTTCAGAATTGGGTGTCAACATAGCAGGATAGGAATTATTCGACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGCTT +MK115065.1,tat_exon1,5267,5486,5830,6045,forward,0.49064354176175273,MEPVDPSLEPWKHPGSQPMTACNNCYCKRCCFHCQVCFTRKGLGISYGRKKRRQRRRASHSSQNHQAALPEQ,MEPVDPSLEPWKHPGSQPMTACNNCYCKRCCFHCQVCFTRKGLGISYGRKKRRQRRRASHSSQNHQAALPEQ*,ATGGAGCCAGTAGATCCTAGCTTAGAGCCCTGGAAACATCCAGGAAGTCAACCTATGACTGCTTGTAACAATTGCTATTGTAAACGGTGTTGCTTTCATTGCCAAGTTTGCTTCACAAGAAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTTCTCACAGCAGTCAGAATCATCAAGCGGCTCTACCAGAGCAGTAA +MK115065.1,rev_exon1,5406,5484,5969,6045,forward,0.5132850241545894,MAGRSGDSDEELLTAVRIIKRLYQSS,MAGRSGDSDEELLTAVRIIKRLYQSS,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTTCTCACAGCAGTCAGAATCATCAAGCGGCTCTACCAGAGCAGT +MK115065.1,vpu,5498,5744,6061,6310,forward,0.5478477410174315,MHALEIAAIVGLVVAAIIAIVVWSIVLIEYRKILRQRKIDRLIDRIRERAEDSGNESDGDQEELSALVEMGHLVPWDGDDM,MHALEIAAIVGLVVAAIIAIVVWSIVLIEYRKILRQRKIDRLIDRIRERAEDSGNESDGDQEELSALVEMGHLVPWDGDDM*,ATGCATGCCTTAGAAATAGCAGCAATAGTAGGATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGTCTATAGTATTAATAGAATATAGGAAAATTTTAAGACAAAGGAAAATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAAAGTGACGGGGACCAGGAGGAGTTATCAGCACTTGTGGAGATGGGGCATCTTGTTCCTTGGGATGGTGATGATATGTAG +MK115065.1,env,5661,8262,6224,8795,forward,0.4773908933354344,MKVTGTRRSYQHLWRWGILFLGMVMICSANNLWVTVYYGVPVWKEATTTLFCASDAKAYETEKHNVWATHACVPTDPSPQEVALENVTETFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDNLNLNRPNNNTCSNNTNYNITEKGEIKNCSFNVTTGIRDRVTKEHALFYKLDVVPIDEGSGNTTGKYRMINCNTSVITQACPKVSFEPIPIHFCAPAGFAILKCKDKKFNGTGECRNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVIRSANLSNNAKTIIVQLNKSVKINCTRPNNNTRRSIHIGPGRAFYGTDIIGDIRQAHCNISGKDWNDTLKQIVIKLKEKFENKTIVFTQSSGGDPEIVMHSFNCGGEFFYCNTTQLFNSTWNNSTWNGTDNWNGTESNSTITLPCRIKQIINLWQEVGRAMYAPPIQGQIRCSSNITGLLLVRDGGSNNSSNDTETFRPGGGDMRDNWRSELYKYKVVKIEPLGIAPTHAKRRVVQREKRAIGLGAFFLGFLGAAGSTMGAASVTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLALERYLKDQQLLGIWGCSGKLICTTNVPWNISWSPRWNRSLDEIWTNMTWKQWEKEIDNYTDIIYNLIEQSQNQQEQNEQDLLALDKWASLWNWFDITQWLWYIKIFIMIVGGLIGLRIVFTILSIVNRVRQGYSPLSLQTLLPTQRGPDRPEGTEEGGGERDRGTSTRLVHGFLALIWDDLRSLFLFSYHRLRDLLLIAARIVELLGRRGWEALKYWWNLLQYWSQEIKNSAVSLLNTTAIAVAEGTDRIIEVLQRGFRAILHIPTRIRQGLERALL,MKVTGTRRSYQHLWRWGILFLGMVMICSANNLWVTVYYGVPVWKEATTTLFCASDAKAYETEKHNVWATHACVPTDPSPQEVALENVTETFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDNLNLNRPNNNTCSNNTNYNITEKGEIKNCSFNVTTGIRDRVTKEHALFYKLDVVPIDEGSGNTTGKYRMINCNTSVITQACPKVSFEPIPIHFCAPAGFAILKCKDKKFNGTGECRNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVIRSANLSNNAKTIIVQLNKSVKINCTRPNNNTRRSIHIGPGRAFYGTDIIGDIRQAHCNISGKDWNDTLKQIVIKLKEKFENKTIVFTQSSGGDPEIVMHSFNCGGEFFYCNTTQLFNSTWNNSTWNGTDNWNGTESNSTITLPCRIKQIINLWQEVGRAMYAPPIQGQIRCSSNITGLLLVRDGGSNNSSNDTETFRPGGGDMRDNWRSELYKYKVVKIEPLGIAPTHAKRRVVQREKRAIGLGAFFLGFLGAAGSTMGAASVTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLALERYLKDQQLLGIWGCSGKLICTTNVPWNISWSPRWNRSLDEIWTNMTWKQWEKEIDNYTDIIYNLIEQSQNQQEQNEQDLLALDKWASLWNWFDITQWLWYIKIFIMIVGGLIGLRIVFTILSIVNRVRQGYSPLSLQTLLPTQRGPDRPEGTEEGGGERDRGTSTRLVHGFLALIWDDLRSLFLFSYHRLRDLLLIAARIVELLGRRGWEALKYWWNLLQYWSQEIKNSAVSLLNTTAIAVAEGTDRIIEVLQRGFRAILHIPTRIRQGLERALL*,ATGAAAGTGACGGGGACCAGGAGGAGTTATCAGCACTTGTGGAGATGGGGCATCTTGTTCCTTGGGATGGTGATGATATGTAGTGCCAACAACTTGTGGGTCACAGTCTATTATGGGGTACCTGTATGGAAAGAAGCAACTACCACTCTATTTTGTGCATCAGATGCTAAAGCATATGAGACAGAGAAGCATAATGTTTGGGCAACCCATGCCTGTGTACCCACAGACCCCAGCCCACAGGAAGTAGCATTGGAAAATGTGACAGAAACATTTAACATGTGGAAAAATGACATGGTAGAGCAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGCCTAAAGCCATGTGTGAAACTAACCCCACTCTGTGTTACTTTAAATTGCACTGATAATTTAAATCTAAATCGCCCTAACAATAATACTTGTAGTAATAATACTAATTATAATATAACGGAAAAAGGAGAAATAAAAAACTGCTCTTTCAATGTCACCACAGGAATAAGAGATAGGGTGACAAAAGAACATGCACTTTTCTATAAACTTGATGTAGTACCAATAGATGAAGGTAGTGGAAATACTACGGGCAAATATAGGATGATAAATTGTAACACCTCAGTCATTACACAAGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTTTTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAAGATAAGAAATTCAATGGAACAGGAGAATGTAGAAATGTCAGCACAGTACAATGTACACATGGAATTAGGCCAGTAGTATCAACTCAACTGCTGCTGAACGGCAGTCTAGCAGAAGAAGAGATAGTAATTAGATCTGCCAATCTCTCGAACAATGCTAAAACCATAATAGTACAGCTGAATAAATCTGTAAAAATTAATTGTACAAGACCCAACAATAATACAAGAAGAAGTATACACATAGGACCAGGGAGGGCATTTTATGGAACAGACATAATAGGAGATATAAGACAAGCGCATTGTAACATTAGTGGGAAAGATTGGAATGACACTTTAAAACAGATAGTTATAAAATTAAAAGAAAAATTTGAGAATAAAACAATAGTCTTTACTCAATCCTCAGGAGGGGACCCAGAGATAGTGATGCATAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAATACAACACAGCTGTTTAATAGTACTTGGAATAATAGTACTTGGAATGGTACTGACAATTGGAATGGTACTGAATCAAATAGCACTATCACACTCCCATGCAGAATAAAACAAATTATAAACTTGTGGCAGGAAGTAGGAAGAGCAATGTATGCCCCTCCCATCCAAGGGCAAATTAGATGTTCATCAAATATTACAGGGCTGCTGCTAGTAAGAGATGGTGGGAGCAACAATAGTAGTAATGATACAGAGACCTTCAGGCCTGGAGGAGGAGATATGAGGGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTCAAAATTGAACCATTAGGAATAGCACCCACCCATGCAAAGAGAAGAGTGGTGCAAAGGGAAAAAAGAGCAATAGGACTTGGAGCTTTCTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAGCAGCAAAACAATTTGCTGAGAGCTATTGAGGCGCAACAGCATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTTTGGAAAGATACCTAAAGGATCAACAGCTCCTGGGGATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTAATGTGCCCTGGAATATTAGTTGGAGCCCTAGATGGAATAGATCTCTAGATGAGATTTGGACTAACATGACCTGGAAGCAGTGGGAAAAGGAAATTGACAATTACACAGACATAATATATAACCTAATTGAACAATCACAGAACCAACAAGAACAGAATGAACAAGACTTATTGGCATTAGATAAGTGGGCAAGTTTGTGGAATTGGTTTGACATTACACAGTGGCTATGGTATATAAAAATATTCATAATGATAGTAGGAGGCTTGATAGGTTTAAGAATAGTTTTTACTATACTGTCTATAGTGAATAGAGTTAGGCAGGGATACTCACCATTGTCATTGCAGACCCTCCTCCCAACCCAGAGGGGACCCGACAGGCCCGAAGGAACAGAAGAAGGAGGTGGAGAGAGAGACAGAGGCACATCCACGAGATTAGTGCATGGATTCTTAGCACTCATCTGGGACGACCTGCGGAGCCTGTTCCTCTTCAGTTACCACCGCTTGAGAGACTTACTCTTGATTGCGGCGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCACTGAAGTATTGGTGGAATCTCCTGCAGTATTGGAGTCAGGAAATAAAGAATAGTGCAGTTAGCTTGCTCAACACCACAGCAATAGCAGTAGCTGAGGGGACAGATAGGATTATAGAAGTATTACAAAGAGGCTTTAGAGCTATTCTCCACATACCTACACGAATAAGACAGGGCTTAGAAAGGGCTTTGCTATAA +MK115065.1,tat_exon2,7843,7936,8376,8469,forward,0.439759036144578,RPSSQPRGDPTGPKEQKKEVERETEAHPRD,RPSSQPRGDPTGPKEQKKEVERETEAHPRD*,AGACCCTCCTCCCAACCCAGAGGGGACCCGACAGGCCCGAAGGAACAGAAGAAGGAGGTGGAGAGAGAGACAGAGGCACATCCACGAGATTAG +MK115065.1,rev_exon2,7844,8120,8377,8653,forward,0.40871934604904625,DPPPNPEGTRQARRNRRRRWRERQRHIHEISAWILSTHLGRPAEPVPLQLPPLERLTLDCGEDCGTSGTQGVGSTEVLVESPAVLESGNKE,DPPPNPEGTRQARRNRRRRWRERQRHIHEISAWILSTHLGRPAEPVPLQLPPLERLTLDCGEDCGTSGTQGVGSTEVLVESPAVLESGNKE*,GACCCTCCTCCCAACCCAGAGGGGACCCGACAGGCCCGAAGGAACAGAAGAAGGAGGTGGAGAGAGAGACAGAGGCACATCCACGAGATTAGTGCATGGATTCTTAGCACTCATCTGGGACGACCTGCGGAGCCTGTTCCTCTTCAGTTACCACCGCTTGAGAGACTTACTCTTGATTGCGGCGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCACTGAAGTATTGGTGGAATCTCCTGCAGTATTGGAGTCAGGAAATAAAGAATAG +MK115065.1,nef,8263,8911,8796,9417,forward,0.5465033301617482,MGNKLSRGLRAGWPTIRERMRRARPVREPEPAAAGVGAASRDLERHGALTSSNTAATNADVACLEAQQEEEEVGFPVRPQVPLRPMTYKGALDISHFLKEKGGLDGLIYSKRRQDILDLWLYNTQGYFPDWQNYTPGPGVRFPLCFGWCFKLVPVDPDKVEEASVGENNCLLSPENLHGMEDEHREVLQWRFDSRLAFHHVARELHPEYYKDC,MGNKLSRGLRAGWPTIRERMRRARPVREPEPAAAGVGAASRDLERHGALTSSNTAATNADVACLEAQQEEEEVGFPVRPQVPLRPMTYKGALDISHFLKEKGGLDGLIYSKRRQDILDLWLYNTQGYFPDWQNYTPGPGVRFPLCFGWCFKLVPVDPDKVEEASVGENNCLLSPENLHGMEDEHREVLQWRFDSRLAFHHVARELHPEYYKDC*H*,ATGGGTAACAAGTTGTCAAGAGGGCTCAGGGCTGGATGGCCTACCATAAGGGAGAGAATGAGACGAGCTAGGCCAGTAAGAGAGCCAGAGCCAGCAGCAGCTGGGGTGGGAGCAGCATCTCGAGACCTGGAAAGACATGGAGCACTTACAAGTAGCAATACAGCAGCTACCAATGCTGATGTTGCCTGCCTGGAAGCACAACAGGAGGAGGAAGAGGTGGGTTTTCCAGTCAGACCTCAGGTACCTTTAAGGCCAATGACTTACAAGGGAGCTCTAGATATTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGATGGGCTAATTTACTCCAAAAGAAGACAAGACATCCTTGATCTGTGGCTCTACAACACACAAGGCTACTTCCCTGACTGGCAGAACTACACACCAGGGCCAGGAGTCAGATTTCCACTGTGTTTTGGATGGTGCTTCAAGCTAGTACCAGTTGATCCAGATAAGGTAGAAGAGGCCAGTGTAGGAGAGAACAACTGCTTGTTAAGCCCCGAGAACCTGCATGGAATGGAGGACGAACACAGAGAAGTATTGCAGTGGAGGTTTGACAGCCGCCTAGCATTTCATCACGTGGCCCGAGAGCTGCATCCGGAGTATTACAAGGACTGCTGACACTGA +MK115464.1,gag,527,2297,789,2292,forward,0.706855791962175,MTETLLVQNANPDCKTILKALRPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSNIIMMQRGNFRNQRKTVKCFNCGKERHIARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLRKIWPSSKGRPRNFLQSRPEPTAPPEESFRFREETATPPQKQEPVDKEVYPLASLKSLFGNDPSSQ,MLQAIPGLRVGPAGSHPFALTSLSASCCHQSQSPGCSGATARTGT*KRK*NQRSSLDAGLGLLKRARQEARGGDW*VRQF*LAEARRREISARASVLSGGELDKWEKIRLRPGGKKRYKLKHIVWASRELERFAVNPGLLETTEGCKQILEQLQPSLPTGSEELRSLFNTVATLYCVHKRIEVQDTKEALEKIEEEQNKSKKKAQQAVADKGSTSQVSQNYPIVQNLQGQMVHQAISPRTLNA*VKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAE*DRVHPVHAGPVAPGQMREPRGSDIAGTTSTLQEQIA*MTSNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYKVLRAEQASQDVKN*MTETLLVQNANPDCKTILKALRPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSNIIMMQRGNFRNQRKTVKCFNCGKERHIARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLRKIWPSSKGRPRNFLQSRPEPTAPPEESFRFREETATPPQKQEPVDKEVYPLASLKSLFGNDPSSQ*,ATGCTTCAGGCCATCCCTGGTTTGAGGGTGGGTCCCGCCGGGTCCCACCCCTTTGCACTCACGAGCCTGTCTGCCTCCTGCTGCCATCAATCACAGAGCCCAGGCTGTTCGGGCGCCACTGCCCGAACAGGGACCTGAAAGCGAAAGTAGAACCAGAGGAGCTCTCTCGACGCAGGACTCGGCTTGCTGAAGCGCGCACGGCAAGAGGCGAGAGGCGGCGACTGGTGAGTACGCCAATTTTGACTAGCAGAGGCTAGAAGGAGAGAGATAAGTGCGAGAGCGTCTGTATTAAGCGGGGGAGAATTAGATAAATGGGAAAAAATTCGGTTAAGGCCAGGAGGAAAGAAAAGATATAAATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTTAACCCCGGCCTTTTAGAAACAACAGAAGGATGTAAACAAATACTGGAACAGCTGCAACCATCCCTTCCGACAGGATCAGAAGAACTTAGATCATTATTTAATACAGTAGCAACCCTCTATTGTGTGCATAAGAGAATAGAGGTACAAGACACCAAGGAAGCCTTAGAAAAGATAGAAGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAGGCAGTAGCTGACAAAGGAAGTACCAGCCAGGTCAGCCAAAATTACCCGATAGTGCAGAACCTCCAGGGGCAAATGGTACATCAGGCCATATCGCCTAGAACTTTAAATGCATAGGTGAAAGTAGTAGAAGAGAAGGCCTTTAGCCCAGAGGTAATACCCATGTTTTCAGCATTATCGGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATCAATGAGGAGGCTGCAGAATAAGATAGAGTGCATCCAGTGCATGCAGGGCCTGTTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATAGATGACAAGTAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCCTAGGATTAAATAAGATAGTAAGAATGTATAGCCCTACCAGCATTTTGGACATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAAAGTCCTAAGAGCCGAGCAAGCATCACAGGATGTAAAAAATTAGATGACAGAAACCTTATTAGTCCAAAATGCAAACCCAGATTGTAAGACTATTTTAAAAGCATTAAGACCAGCAGCAACACTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCCGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAACAAATTCAAATATCATAATGATGCAGAGAGGCAATTTTAGGAACCAAAGAAAGACTGTTAAGTGTTTCAATTGTGGCAAAGAAAGGCACATAGCCAGAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGATTGTACTGAGAGACAGGCTAATTTTTTAAGGAAGATCTGGCCTTCCTCCAAAGGAAGGCCAAGGAACTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTAGGGAGGAGACAGCAACTCCTCCTCAGAAGCAGGAGCCGGTGGACAAAGAAGTGTATCCTTTAGCTTCCCTCAAATCACTCTTTGGCAACGACCCCTCGTCACAATAA +MK115464.1,pol,2089,5101,2084,5096,forward,0.7518376924488996,AKIKQECGIPYNPQSQEVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDNRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIKDYGKQMAGDDCVASRQDED,FFKEDLAFLQRKAKELSSEQTRANSPTRRELQV*GGDSNSSSEAGAGGQRSVSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEISLPGR*KPKMIEGIGGFIKVRQYDQITIEICGHKAIGTVLVGPTPVNIIGRNLLTQISCTLNFPISPIETVPVQLKPGIDSPKVKQWPLTEEKIKALVEICTEMEKEKKISKIRPENPYNTPVFAIKKKDSTK*RKLVDFKELNKRTQDF*EVQLRIPHPARLKKKKSITVLDVGDAYFSIPLDKDFKKYTAFTIPSINNKTPEIRYQYNVLPQG*KRSPAIFQSSMIKILEPFRKQNPDIVIYQYIDDLYVRSDLEIRQHRTKIEELRQHLLK*RLTTPDKKHQKEPPFLWISYELHPDKWTVQPIVLPDKDSWTVNDIQKLVRKLN*ASQIYAEIKVRQLCKLLKGAKALTEVIQLTEEAELELAENKEILKEPVHEVYYDPSKDLIAELQKQRQGQWTYQIYQEPFKNLKTGKYARTRGTHTNDVKQLTEAVQKITTESIVI*GKTPRFKLPIQKET*DT*WTEYWQAT*IPE*EFVNTPPLVKL*YQLEKEPIVGAETFYVDRAANKETKLRKAGYVTSRGRQKVVSLTDTTNQKTELQAICLALQDSGLEVNIVTDSQYALRIIQAQPDKSESEIVNQIIEQLIKKEKVYLA*VPAHKRIRRNEQVDKLVSARIRKVLFLDRIDKAQEEHKKYHNN*RAMASDFNLPPVVAKKIVASCDKCQLKKEATHRQVDCSPRIWQLDCTHLEGKVILVAVHVASRYIEAEVIPAETGQETAYFLLKLAGR*PVKAIHTDNGTNFTSATVKAAC**AKIKQECGIPYNPQSQEVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDNRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIKDYGKQMAGDDCVASRQDED*,TTTTTTAAGGAAGATCTGGCCTTCCTCCAAAGGAAGGCCAAGGAACTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTAGGGAGGAGACAGCAACTCCTCCTCAGAAGCAGGAGCCGGTGGACAAAGAAGTGTATCCTTTAGCTTCCCTCAAATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAGGAGGGCAGCTAAAGGAAGCTCTATTAGATACAGGAGCAGATGACACAGTATTAGAAGAAATAAGTTTGCCAGGAAGATAGAAACCAAAAATGATAGAAGGAATTGGAGGCTTTATCAAAGTAAGACAGTATGATCAGATAACTATAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGCAGAAATTTGTTGACTCAGATTAGTTGTACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTACAATTAAAACCAGGAATAGATAGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAAGAAAAAAAGATTTCAAAAATTAGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGAAGAAAATTAGTAGATTTCAAGGAACTTAATAAAAGAACTCAAGACTTCTAAGAAGTTCAATTAAGAATACCACACCCCGCAAGGTTAAAAAAGAAGAAATCAATAACAGTACTAGATGTAGGTGATGCATATTTTTCAATTCCCTTAGATAAAGACTTCAAGAAGTATACTGCATTTACCATACCTAGTATAAATAATAAGACACCAGAGATTAGATATCAGTACAATGTGCTTCCACAGGGATAGAAAAGATCACCAGCAATATTCCAAAGTAGCATGATAAAAATCTTAGAGCCTTTTAGAAAGCAAAATCCAGACATAGTTATCTATCAATACATAGATGACTTGTATGTAAGATCTGACTTAGAAATAAGGCAGCATAGAACAAAAATAGAGGAACTGAGACAACACTTGTTGAAGTAGAGATTGACCACACCAGATAAAAAACATCAGAAAGAACCCCCATTCCTGTGGATAAGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAGACAAAGATAGCTGGACTGTCAATGACATACAGAAGCTAGTAAGAAAATTGAATTGAGCAAGTCAGATTTATGCAGAGATTAAAGTGAGACAATTATGTAAACTCCTTAAAGGAGCCAAAGCGCTAACAGAAGTGATACAACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAAAGAAATTCTAAAAGAACCAGTACATGAAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAGTTACAGAAGCAGAGGCAAGGCCAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAGTATGCAAGAACGAGAGGTACCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTGATATGAGGAAAGACCCCTAGATTTAAACTACCCATACAGAAAGAAACATAAGATACCTAGTGGACAGAATATTGGCAAGCCACCTAGATTCCCGAGTAAGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATAGTACCAATTAGAAAAAGAGCCTATTGTAGGAGCAGAAACTTTCTATGTAGATAGGGCAGCTAATAAAGAGACTAAATTAAGAAAAGCAGGATATGTTACTAGCAGAGGAAGACAAAAGGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAACTGCAAGCAATTTGTCTAGCATTGCAGGATTCAGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCACTAAGAATAATTCAAGCACAACCAGATAAGAGTGAATCAGAGATAGTCAATCAAATAATAGAGCAGTTAATAAAAAAGGAAAAGGTCTACCTTGCATAGGTACCAGCACACAAAAGAATTAGAAGAAATGAACAAGTAGATAAATTAGTCAGTGCTAGAATCAGGAAAGTCCTATTTTTAGATAGAATAGATAAGGCCCAAGAAGAGCATAAGAAATATCACAATAATTAAAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTAGTAGCAAAAAAAATAGTAGCCAGTTGTGATAAATGCCAGCTAAAAAAAGAAGCCACGCATAGACAAGTAGACTGTAGTCCAAGAATATGGCAATTAGATTGTACACATTTAGAAGGAAAAGTTATCCTAGTAGCAGTTCATGTAGCCAGTAGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAAGAAACAGCATACTTCCTCTTAAAATTAGCAGGAAGGTAGCCAGTGAAAGCAATACATACAGACAATGGAACCAATTTCACCAGTGCTACGGTTAAGGCCGCCTGTTAGTAGGCAAAGATCAAGCAGGAATGTGGCATTCCCTACAATCCCCAAAGTCAAGAAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAAGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTCCAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACAGACCTACAAACTAAAGAATTACAGAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAACAGAGATCCACTTTGGAAAGGACCAGCAAAACTTCTTTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGACATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATCATTAAGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG +MK115464.1,vif,5045,5624,5040,5619,forward,0.7067546928117459,MENRWQVMIVWQVDRMRISTWKSLVKHHMYISKKAQGWFYRHHYENPHPRISSEVHIPLGDARLVITTY,MENRWQVMIVWQVDRMRISTWKSLVKHHMYISKKAQGWFYRHHYENPHPRISSEVHIPLGDARLVITTY*GLHTGERDWHLGQGVSIEWKERKYSTQVTPDLADQLIHLYYFDCFAESAIREAILGHRVSPRCEYQAGHNKVGSLQYLALTALVTPKKTKPPLPSVTKLTEDRWNKPQKTKGHRRSQTMNGH*,ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGCACATGGAAAAGTTTAGTAAAACACCATATGTACATTTCAAAGAAAGCCCAAGGATGGTTTTATAGACATCACTATGAAAATCCTCATCCAAGAATAAGTTCAGAAGTACACATCCCGCTAGGGGATGCTAGATTGGTAATAACAACATATTAGGGTCTGCATACAGGAGAAAGAGACTGGCATTTAGGTCAAGGAGTCTCCATAGAATGGAAGGAAAGGAAATATAGCACACAAGTAACCCCTGACCTAGCAGACCAACTAATTCACCTGTATTATTTTGATTGTTTTGCAGAATCTGCTATAAGAGAGGCCATATTAGGACATAGAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGATCTCTACAGTACTTGGCACTAACAGCATTAGTAACACCAAAAAAGACAAAGCCACCTTTGCCTAGTGTGACAAAACTGACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAAGGAGCCAAACAATGAATGGACACTAG +MK115464.1,vpr,5563,5857,5558,5850,forward,0.4557731262660367,MEQAPEDQGPQKEPNNEWTLELLEELKREAVRHFPRTWLHGLGQHIYETYEDTWTGVGALIRILQQLLFIHFRIRCQHSRIGITRQRRARNRASRS,MEQAPEDQGPQKEPNNEWTLELLEELKREAVRHFPRTWLHGLGQHIYETYEDTWTGVGALIRILQQLLFIHFRIRCQHSRIGITRQRRARNRASRS*I,ATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAAGGAGCCAAACAATGAATGGACACTAGAGCTCTTAGAAGAGCTTAAGAGAGAAGCTGTTAGACATTTTCCTAGGACATGGCTTCATGGCTTAGGACAACATATCTATGAAACTTATGAGGATACTTGGACAGGAGTAGGAGCCTTAATAAGAATTCTGCAACAACTGCTGTTTATTCATTTCAGAATTAGGTGCCAACATAGCAGAATAGGCATCACTCGACAGAGGAGAGCAAGAAATAGAGCCAGTAGATCCTAGATT +MK115464.1,tat_exon1,5711,6053,5830,6045,forward,0.7735619356802272,MRILGQE,MRILGQE*EP**EFCNNCCLFISELGANIAE*ASLDRGEQEIEPVDPRLEPWKHPGSQPKTPCTKCYCKKCCFHCQVCFTTKGLGISYGRKKRRQRRRPPQDSQTHQVPLPKQ*,ATGAGGATACTTGGACAGGAGTAGGAGCCTTAATAAGAATTCTGCAACAACTGCTGTTTATTCATTTCAGAATTAGGTGCCAACATAGCAGAATAGGCATCACTCGACAGAGGAGAGCAAGAAATAGAGCCAGTAGATCCTAGATTAGAGCCCTGGAAGCATCCAGGAAGTCAGCCTAAGACTCCTTGTACCAAATGCTATTGTAAAAAATGCTGCTTTCATTGCCAAGTTTGTTTCACAACAAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGACCTCCTCAAGACAGTCAGACTCATCAAGTACCTCTACCAAAGCAGTGA +MK115464.1,rev_exon1,5973,6051,5969,6045,forward,0.48200514138817474,MAGRSGDSDEDLLKTVRLIKYLYQSS,MAGRSGDSDEDLLKTVRLIKYLYQSS,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGACCTCCTCAAGACAGTCAGACTCATCAAGTACCTCTACCAAAGCAGT +MK115464.1,vpu,6065,6347,6061,6310,forward,0.6799294887937548,AIVLIEYKKILKQRRIDRLIDRIIDKAEDSGNESEGDQEELSAFVEIGHHAP,MQSLYILTIVALVVAAILAIVV*AIVLIEYKKILKQRRIDRLIDRIIDKAEDSGNESEGDQEELSAFVEIGHHAP*NVDDL*YCRPVVGHSLL*,ATGCAATCTTTATATATATTAACAATAGTAGCATTAGTAGTAGCAGCAATATTAGCAATAGTTGTGTAGGCCATAGTACTCATAGAATATAAGAAAATATTAAAACAAAGGAGAATAGATAGGTTAATTGATAGAATAATAGATAAGGCAGAAGACAGTGGCAATGAGAGTGAAGGAGATCAAGAGGAGTTATCAGCATTTGTAGAGATAGGGCATCATGCTCCTTAGAATGTTGATGATCTATAGTACTGCAGACCAGTGGTGGGTCACAGTCTATTATAA +MK115464.1,env,6228,8826,6224,8795,forward,0.7468204673173611,MTNCTFNITTSIKDKIKKEAALFYKIDLVEIDEKKNNSSTRYRLINCNTSAITQACPKVSFKPIPIHFCAPASFAILKCNNKKFSGKGPCTNVSTVQCTHRIKPVVSTQLLLNGSLAEEEVMIRSDNITDNTKNIIVQLKEAIRIFCIRPNNNTRKSINIRPGRAFYTTGDIIRDIRQAHCNISGNWSNTLKQIATQLGKQLNQTQQIIFNSSAGKDPEIVTHSFNCGKKFFYCNSSSLFNST,MRVKEIKRSYQHL*R*GIMLLRMLMIYSTADQWWVTVYYKVPVWREANTTLFCASDAKAYSTEAHNV*ATHACVPTDPNPQEIVIENVTEDFNMWKNNMVDQMHEDIISL*DQSLKPCVKLTPLCVTLNCTDIRNSTVTSNTTSNTT*GEMTNCTFNITTSIKDKIKKEAALFYKIDLVEIDEKKNNSSTRYRLINCNTSAITQACPKVSFKPIPIHFCAPASFAILKCNNKKFSGKGPCTNVSTVQCTHRIKPVVSTQLLLNGSLAEEEVMIRSDNITDNTKNIIVQLKEAIRIFCIRPNNNTRKSINIRPGRAFYTTGDIIRDIRQAHCNISGNWSNTLKQIATQLGKQLNQTQQIIFNSSAGKDPEIVTHSFNCGKKFFYCNSSSLFNST*TKNGTDSWQSNDTQNSNITLQCRIKQIINLWQEVRKAMYAPPISRQINCTSNITGLVLTRDRRNETKTFRPGRENMKDNWRSKLYKYKVVRIEPLRIAPTKAKRRVVQREKRAVRLGAMFLKFLGAARSTIGAASIALTEQARRVLSGIVQQQNNLLRAIEAQQHLLQLTV*GIKQLQARVLAVERYLQDQQLLGL*GCSRKLICTTTVP*NRS*GRHNKNYKSLDDI*DNMT*IE*EKEIDNYTSLIYTLITESHSQQKKNEQELLALDK*ASL*N*FDISQWLWYIKIFIMIVGGLVSLRIVFAVLSIVNKVRQGYSPLSFQTLLPAPRGADRPERIEERGRERDKGRSGRLVNGFLALI*DDLRSLCLFSYHRLSDLLLIVIKIVELLRRKR*EALKY**NLLQY*SQELKNSAVSLLNTTAIVVAERTDKIIEILQRISRAFLHIPRRIRQGLEKALL*DRWQVVKK*,ATGAGAGTGAAGGAGATCAAGAGGAGTTATCAGCATTTGTAGAGATAGGGCATCATGCTCCTTAGAATGTTGATGATCTATAGTACTGCAGACCAGTGGTGGGTCACAGTCTATTATAAGGTACCTGTGTGGAGAGAAGCAAACACCACTCTATTTTGTGCATCAGATGCTAAAGCATATAGTACAGAGGCACATAATGTTTAGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAATAGTAATAGAAAATGTAACAGAAGATTTTAACATGTGGAAGAATAACATGGTAGATCAGATGCATGAGGATATAATCAGTTTATAGGATCAAAGTCTAAAGCCATGTGTGAAACTAACCCCACTCTGTGTTACTTTAAATTGTACTGATATTAGGAATAGTACCGTTACTTCTAATACTACTTCTAATACTACTTAGGGAGAAATGACAAACTGCACTTTCAATATCACCACAAGCATAAAGGATAAGATAAAAAAAGAAGCGGCACTTTTTTATAAAATTGATTTAGTAGAAATAGATGAAAAGAAAAATAACAGTAGTACCAGATATAGGTTGATAAATTGTAACACCTCAGCCATTACACAAGCCTGCCCAAAGGTATCCTTTAAGCCAATTCCCATACATTTTTGTGCCCCGGCTAGTTTTGCAATTCTAAAGTGTAATAATAAGAAGTTCAGTGGAAAAGGACCATGTACAAATGTCAGCACAGTGCAATGTACACATAGAATTAAGCCAGTAGTATCAACTCAACTGCTGTTAAATGGCAGTCTAGCAGAAGAAGAGGTAATGATTAGATCTGACAATATCACAGACAATACTAAAAACATAATAGTACAGTTGAAAGAAGCCATACGAATTTTCTGTATAAGACCCAACAACAATACAAGAAAAAGTATAAATATAAGACCAGGAAGAGCATTTTATACAACAGGAGATATAATAAGAGACATAAGGCAAGCACATTGTAACATTAGTGGAAATTGGAGTAACACTTTAAAACAGATAGCTACACAATTAGGAAAACAACTGAATCAAACACAACAAATAATCTTTAATTCATCCGCAGGAAAGGACCCAGAGATTGTAACACACAGTTTTAATTGTGGAAAGAAATTCTTCTATTGTAATTCATCATCACTGTTTAATAGTACCTAGACTAAAAATGGTACTGATAGTTGGCAGTCTAATGATACTCAGAATAGTAATATCACACTCCAATGCAGAATAAAACAAATTATAAACCTGTGGCAGGAAGTAAGAAAAGCAATGTATGCCCCTCCCATCAGTAGACAAATTAACTGTACATCAAATATTACAGGGCTAGTTTTAACAAGAGATAGGAGGAATGAAACTAAGACCTTTAGACCTGGAAGAGAAAATATGAAGGATAATTGGAGAAGTAAATTATATAAATATAAAGTAGTAAGAATTGAACCATTAAGAATAGCACCCACCAAGGCAAAAAGAAGAGTGGTGCAGAGAGAGAAAAGAGCAGTAAGACTAGGAGCTATGTTCCTTAAGTTCTTAGGAGCAGCCAGAAGCACTATAGGCGCAGCGTCGATAGCGCTGACGGAACAGGCCAGACGAGTCTTGTCTGGTATAGTGCAACAGCAGAACAATTTGCTGAGAGCTATTGAGGCGCAACAGCATTTGTTGCAACTCACAGTCTAAGGCATTAAGCAGCTCCAGGCAAGAGTCCTGGCTGTAGAAAGATACCTACAGGATCAACAGCTCCTAGGACTTTGAGGTTGCTCTAGAAAACTCATTTGCACCACTACTGTGCCTTAGAATCGTAGTTGAGGTAGGCATAACAAAAATTACAAAAGTCTAGATGACATTTAGGATAACATGACCTAGATAGAGTAGGAAAAAGAAATTGACAATTACACAAGCTTAATATACACCTTAATTACAGAATCACATTCCCAACAAAAAAAGAATGAACAAGAATTATTGGCATTAGATAAATAGGCAAGTTTGTAGAATTAGTTTGACATATCACAATGGCTGTGGTATATAAAAATATTCATAATGATAGTAGGAGGCTTAGTAAGTTTAAGAATAGTTTTTGCTGTACTTTCTATAGTGAATAAAGTTAGGCAAGGATACTCACCATTATCATTTCAGACCCTCCTCCCAGCCCCGAGAGGAGCCGACAGGCCCGAAAGAATAGAAGAAAGAGGTAGAGAGAGAGACAAAGGCAGATCCGGTCGATTAGTGAACGGATTCTTAGCACTTATCTAGGACGATCTACGGAGCCTATGCCTCTTCAGCTACCACCGCTTGAGCGACTTACTCTTGATTGTGATCAAGATTGTGGAACTTCTAAGACGCAAGAGGTAAGAAGCCCTCAAATATTAGTAGAATCTCCTGCAGTACTAGAGTCAGGAACTAAAGAATAGTGCTGTCAGCTTGCTCAACACCACAGCTATAGTAGTAGCTGAAAGGACAGATAAGATAATAGAAATATTACAAAGAATTAGTAGAGCTTTTCTCCACATACCTAGGAGAATAAGACAGGGCTTAGAAAAGGCTTTGCTATAAGATAGGTGGCAAGTGGTCAAAAAGTAG +MK115464.1,tat_exon2,8380,8476,8376,8469,forward,0.4918032786885247,RPSSQPREEPTGPKE,RPSSQPREEPTGPKE*KKEVERETKADPVD**,AGACCCTCCTCCCAGCCCCGAGAGGAGCCGACAGGCCCGAAAGAATAGAAGAAAGAGGTAGAGAGAGAGACAAAGGCAGATCCGGTCGATTAGTGA +MK115464.1,rev_exon2,8381,8657,8377,8653,forward,0.5716671727907683,RERQRQIRSISERILSTYLGRSTEPMPLQLPPLERLTLDCDQDCGTSKTQEVRSPQILVESPAVLESGTKE,DPPPSPERSRQARKNRRKR*RERQRQIRSISERILSTYLGRSTEPMPLQLPPLERLTLDCDQDCGTSKTQEVRSPQILVESPAVLESGTKE*,GACCCTCCTCCCAGCCCCGAGAGGAGCCGACAGGCCCGAAAGAATAGAAGAAAGAGGTAGAGAGAGAGACAAAGGCAGATCCGGTCGATTAGTGAACGGATTCTTAGCACTTATCTAGGACGATCTACGGAGCCTATGCCTCTTCAGCTACCACCGCTTGAGCGACTTACTCTTGATTGTGATCAAGATTGTGGAACTTCTAAGACGCAAGAGGTAAGAAGCCCTCAAATATTAGTAGAATCTCCTGCAGTACTAGAGTCAGGAACTAAAGAATAG +MK115464.1,nef,9064,9496,8796,9417,forward,0.7267254353902389,MTYKAALDLSHFLKEKGGLEGLVYSQKRQDILDLWIYHTQGYFPDWQNYTPGPRIRYPLTFGWCFKLVPLEPDQVEEANEGENNSLLHPLSQHRMDDPEKEVLVWRFDSRLAFHHMAREKHPEFYKDC,MTYKAALDLSHFLKEKGGLEGLVYSQKRQDILDLWIYHTQGYFPDWQNYTPGPRIRYPLTFGWCFKLVPLEPDQVEEANEGENNSLLHPLSQHRMDDPEKEVLVWRFDSRLAFHHMAREKHPEFYKDC*HRAFHQGLSRRGVA*,ATGACTTATAAAGCAGCTCTAGATCTGAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAGTTTACTCCCAAAAAAGGCAAGATATCCTTGATCTGTGGATCTACCACACACAAGGCTATTTCCCTGATTGGCAGAACTACACACCAGGGCCAAGGATCAGATATCCCCTGACCTTTGGATGGTGCTTCAAGCTAGTACCACTTGAGCCAGATCAGGTAGAAGAGGCCAATGAAGGAGAGAACAACAGCCTGTTACACCCTCTGAGCCAGCATAGGATGGATGACCCGGAGAAAGAAGTGCTAGTGTGGAGATTTGACAGCCGCCTCGCATTTCATCACATGGCCCGAGAGAAGCATCCGGAGTTCTACAAAGACTGCTGACATAGAGCTTTCCACCAGGGACTTTCCAGAAGAGGCGTGGCCTAG +MK115530.1,gag,746,2252,789,2292,forward,0.2932056543547651,MGARASILSGGKLDSWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSVNVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE,MGARASILSGGKLDSWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSVNVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE*R*,ATGGGTGCGAGAGCGTCAATATTAAGCGGGGGAAAATTAGATTCATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATTTAGTATGGGCAAGCAGGGAGCTAGAACGATTTGCCGTTAACCCTGGCCTGTTAGAAACATCAGAGGGATGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATTTAATGCAGTAGCAGTCCTCTATTGTGTACATCAAAGGATACAGGTACAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGTAGCAGCAGCTGACACTGACACAGGAAACAGCAGCCAAAATTACCCCATAGTGCAGAACCTCCAGGGGCAAATGGTACATCAGCCCCTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAAAAGGCCTTCAGCCCAGAAGTCATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGTCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCTTGGGATTAAATAAAATAGTAAGGATGTATAGCCCTACCAGTATTCTGGATATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAGAACTTTAAGAGCTGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATTCGAATCCAGATTGTAAGACTATTTTAAAAGCATTAGGACCAGCAGCAACACTAGAGGAAATGATGACAGCATGTCAAGGAGTGGGGGGACCAGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAAATTCAGTTAATGTAATGATGCAAAGAGGCAATTTTAGAAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACATCAAATGAAAGACTGTACAGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAG +MK115530.1,pol,2038,5050,2084,5096,forward,0.1922427454342348,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVHQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVHQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAGGGGGGCAATTTAAAGAAGCTTTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACCCATAGAAATCTGTGGACACAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGCTTGGTTGTACCTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTCAATAAGAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAATTCCCTTAGATAAAGAATTCAGGAAGTATACTGCATTTACCATACCTAGTACAAATAATGAGACACCAGGGATTAGGTATGAGTACAATGTGCTGCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGCAAAATCCAGATATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAACTGAGACAACATCTGTTAAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAGTGGACAGTACAGCCTATAATACTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTACGCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAGGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTTTAAGAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGCAATGGACAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTACAAAAGATAGCCACAGAAAGCATAGTAATATGGGGAAAAACTCCTAAATTTAGACTACCTATACAAAAAGAAACGTGGGAGACATGGTGGGCAGAGTACTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAATTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACTAAATTAGGCAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAGGTTATCTCCCTAACGGACACAACAAATCAAAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATCAGAAGTAAACATAGTAACAGACTCACAATATACATTAGGAATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCCATCAGATAATAGAGCAGTTAATAAAAAAGGAAAAAGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGACAAACTAGTCAGTGCTGGAGTCAGGAGAGTACTATTTCTAGATGGAATAGATAAGGCCCAAGAAGACCATGAGAAATATCACAGTAATTGGAGAGCAATGGCTGGTGATTTTAATATACCCCCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCAAAAAGGAGAGGCCATGCATGGACAAGTAGATTGTAGTCCAGGAATATGGCAACTAGATTGTACACATCTAGAAGGGAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTCTCCTGAAACTAGCAGGGAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTAATGTGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCCATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTATAGTGCAGGGGAAAGAATAGTAGATATAATAGCAACAGACCTACAAACTAAAGAATTACAGAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGGAGAAAAGCAAAAATCATTAGGGATTATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG +MK115530.1,vif,4994,5573,5040,5619,forward,0.37360555672490003,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPDLADQLIHLYYFDCFSESAIRNAILGHIVNPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPDLADQLIHLYYFDCFSESAIRNAILGHIVNPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH*,ATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATGTTTCAAAGAAAACTAAAGGATGGTTTTATAGACATCACTATGAAAGCACACATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTGGTAGTAACAACATATTGGGGCCTGAATACAGGAGAAAGAGAATGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGAAAAAGGAAATATAGCACACAAGTTGACCCTGACCTAGCAGACCAACTAATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACATATAGTTAATCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGCTCTCTACAATACTTGGCACTAAAAGCATTAACAACACCAAAGAGAAGAAAGCCACCTTTACCTAGTGTTAGGAAACTGACAGAGGATAGATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAG +MK115530.1,vpr,5512,5806,5558,5850,forward,0.39444027047332864,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS*T,ATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAGAGCTTTTAGAGGAACTTAAGAATGAAGCGGTTAGACATTTTCCTAGGCCGTGGCTCCATGGCTTAGGACAACATATCTATGAAACTTATGGGGACACTTGGACAGGAGTGGAGGCCATAATAAGAACCCTGCAACAACTGCTGTTTATTCATTTCAGACTTGGGTGTCGACATAGCAGAATAGGCATTGTGCCACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACT +MK115530.1,tat_exon1,5783,6002,5830,6045,forward,0.31992687385740404,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ*,ATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCACCCAGGAAGTCAGCCTAAAACTCCTTGTACTAACTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAAAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGTAA +MK115530.1,rev_exon1,5922,6000,5969,6045,forward,0.48200514138817474,MAGRSGDSDEELLKAVRLIKILYQSS,MAGRSGDSDEELLKAVRLIKILYQSS,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGT +MK115530.1,vpu,6014,6260,6061,6310,forward,0.5118110236220472,MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAEDSGNESEGDQEELSALMEMGHHAPGDVDDL,MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAEDSGNESEGDQEELSALMEMGHHAPGDVDDL*,ATGCAACCTCTGCACATAGCAGCAATAGTAGGATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGACCATAGTGTTAATAGAATATAGGAAAATATTAAGACAAAAAAGGATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAG +MK115530.1,env,6177,8718,6224,8795,forward,0.4435264018789581,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTESHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSKEGKMAEEMRNCSFNITTEIRNKMQKEYALFYKLDVVPIDDDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYGNKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSGTETFRPGGGDMKDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTESHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSKEGKMAEEMRNCSFNITTEIRNKMQKEYALFYKLDVVPIDDDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYGNKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSGTETFRPGGGDMKDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL*,ATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTGACAGTCTATTATGGGGTACCTGTATGGAAAGAAGCAAACACCACTCTATTTTGTGCATCGGATGCTAAAGCATATACCACAGAGTCACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGGATTGGAAAATGTGACAGAAAATTTTAATATGTGGAAAAATAACATGGTAGAACAGATGCATGAGGATGTAATCAATTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCACTAATCTGAATGTTACTAATACCAATAGCAGTAGTAAGGAGGGAAAGATGGCGGAAGAAATGAGAAACTGCTCTTTCAATATCACCACAGAAATAAGAAATAAGATGCAGAAGGAATATGCACTTTTTTATAAACTTGATGTAGTACCAATAGATGATGATAATACAAGTTATACATTGATAAATTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCTATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAGGATAAGAAGTTCAATGGATCAGGACCATGTAAAAGTGTCAGCACAGTACAATGTACACATGGAATTAAGCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTTTAGCAGAAGAAGAGGTAGTAATTAGATCTGAAAATTTCACGAACAATGCTAAAACCATAATAGTACATCTGAAGGAACCTATACAAATTAATTGTACAAGACCCAACAACAATACAATGAAAAGTATCCCTCTAGGACCAGGAAGAGCATTCTATGCAACAGGAGCCATAATAGGAGATATAAGACAAGCACATTGTAACCTTAGTAGAAAAGCATGGAATAATACTTTAAAACAGGTAGTTGAAAAATTAAAAGAACAATATGGGAATAAAACAATAATCTTTAATCACTCCTCAGGAGGGGACCCAGAAATTATAATGCATACTTTTAATTGTGGAGGGGAATTTTTCTATTGTAATACAACACAGCTGTTTAATAGTACTTGGAATAGTACTTGGACTGGGAATGCTACCGAATTAGATGGAAACATCACACTCCCATGCAGAATAAAACAGATTATAAACAGGTGGCAAGAAGTAGGAAAAGCAATGTATGCCCCTCCCATTAGAGGAAAAATTAGATGTTCATCAAATATTACAGGGTTACTATTAGTAAGAGATGGTGGTAACACGAGCGGGACTGAGACCTTCAGACCTGGAGGAGGAGATATGAAGGACAATTGGAGGAGTGAATTATATAAATATAAAGTAGTAAAAATTGAGCCATTAGGAGTAGCACCCACCAGGGCAAAGAGAAGAGTGGTGCAAAGAGAAAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAAGCCAGGCTGTTATTGTCTGGTATAGTGCAACAGCAAAACAATTTGCTGAGAGCTATTGAGGCGCAACAACATCTATTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTACAGGATCAACAGCGCCTGGGAATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCCTGGAATGCTAGTTGGAGTAATAAATCTCTGAATCAGATTTGGGATAACATGACCTGGATGGAGTGGGAAAGAGAAATTAACAATTACACAGACACAATATACACCTTAATTGAAAAGGCGCAGAACCAGCAGGAAAAGAATGAACAAGAATTATTGGAATTGGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAAATGGCTGTGGTACATAAAATTATTCATAATGATAGTAGGAGGATTGATAGGTTTAAGAATAGTTTTTGCTGTACTTGCTATAGTAAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGTCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAGCTTATTCAATGTCACAGCCATCGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAAGAGCTTGTAGAGCTCTTCTCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCATTGTTATAA +MK115530.1,tat_exon2,8299,8395,8376,8469,forward,0.3161764705882347,RPTSQPRGDPTGPKESKKKVEKETETDQFD,RPTSQPRGDPTGPKESKKKVEKETETDQFD**,AGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGA +MK115530.1,rev_exon2,8300,8585,8377,8653,forward,0.40871934604904625,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVSLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVSLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE*CY*,GACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGTCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAG +MK115530.1,nef,8719,9340,8796,9417,forward,0.48839393532805264,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTYKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPTSLHGVEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTYKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPTSLHGVEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC*H*,ATGGGGGGCAAGTGGTCAAAAAGTAGTGGGGGTGGATGGCCTGCTGTAAGGGAAAGAATGAGACGAACTGAGCCAGCAGCAGAAGGGGTGGGAGCAGTATCTCGAGACCTGGAAAGACATGGAGCAGTCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGCGCCTGGCTGGAAGCACAAGAAGAGGACAGTGAAGTGGGTTTTCCAGTCAGACCTCAGGTGCCTTTAAGACCAATGACTTACAAAGGAGCTCTCGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCCCAAAAAAGACAAGATATCCTTGACCTGTGGGTCTACAACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGACCAGATATCCACTGACCTTTGGGTGGTGTTTCAAGCTAGTACCAGTGGAGCCAGAAGAGGCCAATCAAGGAGAGAACAACTGCTTGTTACACCCTACGAGCCTGCATGGGGTGGAGGACCCGGAAAAAGAAGTATTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCACATGGCCCGAGAGAAGCATCCGGAGTACTACAAAGACTGCTGACATTGA +MK115520.1,gag,695,2195,789,2292,forward,0.2932056543547651,MGARASILSGGKLDSWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSVNVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE,MGARASILSGGKLDSWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSVNVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE*,ATGGGTGCGAGAGCGTCAATATTAAGCGGGGGAAAATTAGATTCATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATTTAGTATGGGCAAGCAGGGAGCTAGAACGATTTGCCGTTAACCCTGGCCTGTTAGAAACATCAGAGGGATGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATTTAATGCAGTAGCAGTCCTCTATTGTGTACATCAAAGGATACAGGTACAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGTAGCAGCAGCTGACACTGACACAGGAAACAGCAGCCAAAATTACCCCATAGTGCAGAACCTCCAGGGGCAAATGGTACATCAGCCCCTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAAAAGGCCTTCAGCCCAGAAGTCATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCTTGGGATTAAATAAAATAGTAAGGATGTATAGCCCTACCAGTATTCTGGATATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAGAACTTTAAGAGCTGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATTCGAATCCAGATTGTAAGACTATTTTAAAAGCATTAGGACCAGCAGCAACACTAGAGGAAATGATGACAGCATGTCAAGGAGTGGGGGGACCAGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAAATTCAGTTAATGTAATGATGCAAAGAGGCAATTTTAGAAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACATCAAATGAAAGACTGTACAGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAA +MK115520.1,pol,1987,4915,2084,5096,forward,0.6923404213213582,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEAFLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDMGNGQYSL,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEAFLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDMGNGQYSL*YCQKKTAGLSMTYRS*WEN*IGQVRFTQGLK*GNYVNSLGEPKH*QR*YH*QKKQS*NWQKTGKF*ENQYMECIMTHQKT**QKYRSRAMDSGHIKFIKSHLKI*KQENMQE*GVPTLMM*NN*QRQYKR*PQKA**YGEKLLNLDYLYKKKHGRHGGQSTGKPPGFLSGSLSIPLP**NYGTN*RKNP**EQKLSM*MGQLIEKLN*AKQDMSLTEEDKRLSP*RTQQIKRLSYKQFI*LCRIRDQK*T**QTHNIH*ESFKHNQIRVNQS*SIR**SS**KRKKSTWHGYQHTKELEEMNK*TN*SVLESGEYYF*ME*IRPKKTMRNITVIGEQWLVILIYPL**QKK**PAVINVSKKERPCMDK*IVVQEYGN*IVHI*KGKLSW*QFM*PVDI*KQKLFQQRQGRKQHTFS*N*QGDGQ*KQYIQTMAAISPVMWLRPPVGGQGSSRNLAFPTIPKVKE**NP*IKN*RKL*DR*EIRLNILRQQYKWQYSSTILKEKGGLGGIVQGKE**I**QQTYKLKNYRNKLQKFKIFGFITGTAEIHFGKDQQSFSGKVKGQ**YKIIVI*K*,TTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAAATAGGGGGGCAATTTAAAGAAGCTTTCTTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACCCATAGAAATCTGTGGACACAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGCTTGGTTGTACCTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTCAATAAGAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAATTCCCTTAGATAAAGAATTCAGGAAGTATACTGCATTTACCATACCTAGTACAAATAATGAGACACCAGGGATTAGGTATGAGTACAATGTGCTGCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGCAAAATCCAGATATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAACTAAGACAACATCTGTTAAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATATGGGAAATGGACAGTACAGCCTATAATACTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTACGCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAGGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTTTAAGAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGCAATGGACAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTACAAAAGATAGCCACAGAAAGCATAGTAATATGGGGAAAAACTCCTAAATTTAGACTACCTATACAAAAAGAAACATGGGAGACATGGTGGGCAGAGTACTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAATTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACTAAATTAGGCAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAGGTTATCTCCCTAACGGACACAACAAATCAAAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATCAGAAGTAAACATAGTAACAGACTCACAATATACATTAGGAATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAATCAGATAATAGAGCAGTTAATAAAAAAGGAAAAAGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGACAAACTAGTCAGTGCTGGAGTCAGGAGAGTACTATTTCTAGATGGAATAGATAAGGCCCAAGAAGACCATGAGAAATATCACAGTAATTGGAGAGCAATGGCTGGTGATTTTAATATACCCCCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCAAAAAGGAGAGGCCATGCATGGACAAGTAGATTGTAGTCCAGGAATATGGCAACTAGATTGTACACATCTAGAAGGGAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTCTCCTGAAACTAGCAGGGAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTAATGTGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCCATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTATAGTGCAGGGGAAAGAATAGTAGATATAATAGCAACAGACCTACAAACTAAAGAATTACAGAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAG +MK115520.1,vif,4948,5527,5040,5619,forward,0.37360555672490003,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHRVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHRVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH*,ATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATGTTTCAAAGAAAACTAAAGGATGGTTTTATAGACATCACTATGAAAGCACTCATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTGGTAGTAACAACATATTGGGGCCTGAATACAGGAGAAAGAGAATGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGAAAAAGGAAATATAGCACACAAGTTGACCCTAACCTAGCAGACCAACTAATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACATAGAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGCTCTCTACAATACTTGGCACTAAAAGCATTAACAACACCAAAGAGAAGAAAGCCACCTTTACCTAGTGTTAGGAAACTGACAGAGGATAGATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAG +MK115520.1,vpr,5466,5760,5558,5850,forward,0.39444027047332864,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS*T,ATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAGAGCTTTTAGAGGAACTTAAGAATGAAGCGGTTAGACATTTTCCTAGGCCGTGGCTCCATGGCTTAGGACAACATATCTATGAAACTTATGGGGACACTTGGACAGGAGTGGAGGCCATAATAAGAACCCTGCAACAACTGCTGTTTATTCATTTCAGACTTGGGTGTCGACATAGCAGAATAGGCATTGTGCCACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACT +MK115520.1,tat_exon1,5737,5956,5830,6045,forward,0.31992687385740404,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ*,ATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCACCCAGGAAGTCAGCCTAAAACTCCTTGTACTAACTGCTATTGCAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAAAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGTAA +MK115520.1,rev_exon1,5876,5957,5969,6045,forward,0.5058246474555488,MAGRSGDSDEELLKAVRLIKILYQSSK,MAGRSGDSDEELLKAVRLIKILYQSSK,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGTAAG +MK115520.1,vpu,5968,6214,6061,6310,forward,0.5118110236220472,MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAEDSGNESEGDQEELSALMEMGHHAPGDVDDL,MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAEDSGNESEGDQEELSALMEMGHHAPGDVDDL*,ATGCAACCTCTGCACATAGCAGCAATAGTAGGATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGACCATAGTGTTAATAGAATATAGGAAAATATTAAGACAAAAAAGGATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAG +MK115520.1,env,6131,8672,6224,8795,forward,0.44177044766072027,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEVHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRDKMQKEYALFYKLDVVPIDDDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYGNKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSGTETFRPGGGNMKDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLDQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEVHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRDKMQKEYALFYKLDVVPIDDDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYGNKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSGTETFRPGGGNMKDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLDQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL*,ATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTGACAGTCTATTATGGGGTACCTGTATGGAAAGAAGCAAACACCACTCTATTTTGTGCATCGGATGCTAAAGCATATACCACAGAGGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGGATTGGAAAATGTGACAGAAAATTTTAACATGTGGAAAAATAACATGGTAGAACAGATGCATGAGGATGTAATCAATTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCACTAATCTGAATGTTACTAATACCAATAGCAGTAGTGAGGAGGGAAAGATGGCGGAAGAAATGAGAAACTGCTCTTTCAATATCACCACAAAAATAAGAGATAAGATGCAGAAAGAATATGCACTTTTTTATAAACTTGATGTAGTACCAATAGATGATGATAATACAAGTTATACATTGATAAATTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCTATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAGGATAAGAAGTTCAATGGATCAGGACCATGTAAAAATGTCAGCACAGTACAATGTACACATGGAATTAAGCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTTTAGCAGAAGAAGAGGTAGTAATTAGATCTGAAAATTTCACGAACAATGCTAAAACCATAATAGTACATCTGAAGGAACCTATACAAATTAATTGTACAAGACCCAACAACAATACAATGAAAAGTATCCCTCTAGGACCAGGAAGAGCATTCTATGCAACAGGAGCCATAATAGGAGATATAAGACAAGCACATTGTAACCTTAGTAGAAAAGCATGGAATAATACTTTAAAACAGGTAGTTGAAAAATTAAAAGAACAATATGGGAATAAAACAATAATCTTTAATCACTCCTCAGGAGGGGACCCAGAAATTATAATGCATACTTTTAATTGTGGAGGGGAATTTTTCTATTGTAATACAACACAGCTGTTTAATAGTACTTGGAATAGTACTTGGACTGGGAATGCTACCGAATTAGATGGAAACATCACACTCCCATGCAGAATAAAACAGATTATAAACAGGTGGCAAGAAGTAGGAAAAGCAATGTATGCCCCTCCCATTAGAGGAAAAATTAGATGTTCATCAAATATTACAGGGTTACTATTAGTAAGAGATGGTGGTAACACGAGCGGGACTGAGACCTTCAGACCTGGAGGAGGAAATATGAAGGACAATTGGAGGAGTGAATTATATAAATATAAAGTAGTAAAAATTGAGCCATTAGGAGTAGCACCCACCAGGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAAGCCAGGCTGTTATTGTCTGGTATAGTGCAACAGCAAAACAATTTGCTGAGAGCTATTGAGGCGCAACAACATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTACAGGATCAACAGCGCCTGGGAATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCCTGGAATGCTAGTTGGAGTAATAAATCTCTGGATCAGATTTGGGATAACATGACCTGGATGGAGTGGGAAAGAGAAATTAACAATTACACAGACACAATATACACCTTAATTGAAAAGGCGCAGAACCAGCAGGAAAAGAATGAACAAGAATTATTGGAATTGGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAAATGGCTGTGGTACATAAAATTATTCATAATGATAGTAGGAGGATTGATAGGTTTAAGAATAGTTTTTGCTGTACTTGCTATAGTAAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGTCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAGCTTATTTAATGTCACAGCCATCGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAAGAGCTTGTAGAGCTCTTCTCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCATTGTTATAA +MK115520.1,tat_exon2,8253,8349,8376,8469,forward,0.3161764705882347,RPTSQPRGDPTGPKESKKKVEKETETDQFD,RPTSQPRGDPTGPKESKKKVEKETETDQFD**,AGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGA +MK115520.1,rev_exon2,8254,8539,8377,8653,forward,0.40871934604904625,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVSLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVSLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE*CY*,GACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGTCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAG +MK115520.1,nef,8673,9294,8796,9417,forward,0.49848743916874616,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDNEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPTSLHGVEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDNEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPTSLHGVEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC*H*,ATGGGGGGCAAGTGGTCAAAAAGTAGTGGGGGTGGATGGCCTGCTGTAAGGGAAAGAATGAGACGAACTGAGCCAGCAGCAGAAGGGGTGGGAGCAGTATCTCGAGACCTGGAAAGACATGGAGCAGTCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGCGCCTGGCTGGAAGCACAAGAAGAGGACAATGAAGTGGGTTTTCCAGTCAGACCTCAGGTGCCTTTAAGACCAATGACTTTCAAAGGAGCTCTCGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCCCAAAAAAGACAAGATATCCTTGACCTGTGGGTCTACAACACACAAGGATACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGACCAGATATCCACTGACCTTTGGGTGGTGTTTCAAGCTAGTACCAGTGGAGCCAGAAGAGGCCAATCAAGGAGAGAACAACTGCTTGTTGCACCCTACGAGCCTGCATGGGGTGGAGGACCCGGAAAAAGAAGTATTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCACATGGCCCGAGAGAAGCATCCGGAGTACTACAAAGACTGCTGACATTGA +MK115503.1,gag,817,2323,789,2292,forward,0.2932056543547651,MGARASILSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWTTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSANVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE,MGARASILSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWTTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSANVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE*R*,ATGGGTGCGAGAGCGTCAATATTAAGCGGGGGAAAATTAGATGCATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATTTAGTATGGGCAAGCAGGGAGCTAGAACGATTTGCCGTTAACCCTGGCCTGTTAGAAACATCAGAGGGATGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATTTAATGCAGTAGCAGTCCTCTATTGTGTACATCAAAGGATACAGGTACAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGTAGCAGCAGCTGACACTGACACAGGAAACAGCAGCCAAAATTACCCCATAGTGCAGAACCTCCAGGGGCAAATGGTACATCAGCCCCTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAAAAGGCCTTCAGCCCAGAAGTCATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGACGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCTTGGGATTAAATAAAATAGTAAGGATGTATAGCCCTACCAGTATTCTGGATATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAGAACTTTAAGAGCTGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATTCGAATCCAGATTGTAAGACTATTTTAAAAGCATTAGGACCAGCAGCAACACTAGAGGAAATGATGACAGCATGTCAAGGAGTGGGGGGACCAGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAAATTCAGCTAATGTAATGATGCAGAGAGGCAATTTTAGAAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACATCAAATGAAAGACTGTACAGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAG +MK115503.1,pol,2109,5121,2084,5096,forward,0.1922427454342348,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSTGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSTGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAGGGGGGCAATTTAAAGAAGCTTTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACCCATAGAAATCTGTGGACACAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGCTTGGTTGTACCTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTCAATAAGAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAATTCCCTTAGATAAAGAATTCAGGAAGTATACTGCATTTACCATACCTAGTACAAATAATGAGACACCAGGGATTAGGTATGAGTACAATGTGCTGCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGCAAAATCCAGATATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAACTGAGACAACATCTGTTAAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAGTGGACAGTACAGCCTATAATACTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTACGCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAGGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTTTAAGAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGCAATGGACAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTACAAAAGATAGCCACAGAAAGCATAGTAATATGGGGAAAAACTCCTAAATTTAGACTACCTATACAAAAAGAAACATGGGAGACATGGTGGGCAGAGTACTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAATTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACTAAATTAGGCAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAGGTTATCTCCCTAACGGACACAACAAATCAAAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATCAGAAGTAAACATAGTAACAGACTCACAATATACATTAGGAATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAATCAGATAATAGAGCAGTTAATAAAAAAGGAAAAAGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGACAAACTAGTCAGTACTGGAGTCAGGAGAGTACTATTTCTAGATGGAATAGATAAGGCCCAAGAAGACCATGAGAAATATCACAGTAATTGGAGAGCAATGGCTGGTGATTTTAATATACCCCCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCAAAAAGGAGAGGCCATGCATGGACAAGTAGATTGTAGTCCAGGAATATGGCAACTAGATTGTACACATCTAGAAGGGAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTCTCCTGAAACTAGCAGGGAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTAATGTGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCCATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTATAGTGCAGGGGAAAGAATAGTAGATATAATAGCAACAGACCTACAAACTAAAGAATTACAGAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGGAGAAAAGCAAAAATCATTAGGGATTATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG +MK115503.1,vif,5065,5644,5040,5619,forward,0.36355859709153127,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH*,ATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATGTTTCAAAGAAAACTAAAGGATGGTTTTATAGACATCACTATGAAAGCACTCATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTGGTAGTAACAACATATTGGGGCCTGAATACAGGAGAAAGAGAATGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGAAAAAGGAAATATAGCACACAAGTTGACCCTAACCTAGCAGACCAACTAATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACATATAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGCTCTCTACAATACTTGGCACTAAAAGCATTAACAACACCAAAGAGAAGAAAGCCACCTTTACCTAGTGTTAGGAAACTGACAGAGGATAGATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAG +MK115503.1,vpr,5583,5877,5558,5850,forward,0.39444027047332864,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS*T,ATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAGAGCTTTTAGAGGAACTTAAGAATGAAGCGGTTAGACATTTTCCTAGGCCGTGGCTCCATGGCTTAGGACAACATATCTATGAAACTTATGGGGACACTTGGACAGGAGTGGAGGCCATAATAAGAACCCTGCAACAACTGCTGTTTATTCATTTCAGACTTGGGTGTCGACATAGCAGAATAGGCATTGTGCCACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACT +MK115503.1,tat_exon1,5854,6073,5830,6045,forward,0.31992687385740404,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ*,ATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCACCCAGGAAGTCAGCCTAAAACTCCTTGTACTAACTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAAAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGTAA +MK115503.1,rev_exon1,5993,6074,5969,6045,forward,0.5058246474555488,MAGRSGDSDEELLKAVRLIKILYQSSK,MAGRSGDSDEELLKAVRLIKILYQSSK,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGTAAG +MK115503.1,vpu,6085,6331,6061,6310,forward,0.5254806794847863,MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAKDSGNESEGDQEELSALMEMGHHAPGDVDDL,MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAKDSGNESEGDQEELSALMEMGHHAPGDVDDL*,ATGCAACCTCTGCACATAGCAGCAATAGTAGGATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGACCATAGTGTTAATAGAATATAGGAAAATATTAAGACAAAAAAGGATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAAAAGACAGTGGCAATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAG +MK115503.1,env,6248,8789,6224,8795,forward,0.4421225244922844,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEAHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRNKMQKEYALFYKLDVVPIDNDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYENKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSETETFRPGGGDMKDNWRSELYKYKVEKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEAHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRNKMQKEYALFYKLDVVPIDNDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYENKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSETETFRPGGGDMKDNWRSELYKYKVEKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL*,ATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTGACAGTCTATTATGGGGTACCTGTATGGAAAGAAGCAAACACCACTCTATTTTGTGCATCGGATGCTAAAGCATATACCACAGAGGCACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGGATTGGAAAATGTGACAGAAAATTTTAACATGTGGAAAAATAACATGGTAGAACAGATGCATGAGGATGTAATCAATTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCACTAATCTGAATGTTACTAATACCAATAGCAGTAGTGAGGAGGGAAAGATGGCGGAAGAAATGAGAAACTGCTCTTTCAATATCACCACAAAAATAAGAAATAAGATGCAGAAGGAATATGCACTTTTTTATAAACTTGATGTAGTACCAATAGATAATGATAATACAAGTTATACATTGATAAATTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCTATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAGGATAAGAAGTTCAATGGATCAGGACCATGTAAAAATGTCAGCACAGTACAATGTACACATGGAATTAAGCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTTTAGCAGAAGAAGAGGTAGTAATTAGATCTGAAAATTTCACGAACAATGCTAAAACCATAATAGTACATCTGAAGGAACCTATACAAATTAATTGTACAAGACCCAACAACAATACAATGAAAAGTATCCCTCTAGGACCAGGAAGAGCATTCTATGCAACAGGAGCCATAATAGGAGATATAAGACAAGCACATTGTAACCTTAGTAGAAAAGCATGGAATAATACTTTAAAACAGGTAGTTGAAAAATTAAAAGAACAATATGAGAATAAAACAATAATCTTTAATCACTCCTCAGGAGGGGACCCAGAAATTATAATGCATACTTTTAATTGTGGAGGGGAATTTTTCTATTGTAATACAACACAGCTGTTTAATAGTACTTGGAATAGTACTTGGACTGGGAATGCTACCGAATTAGATGGAAACATCACACTCCCATGCAGAATAAAACAGATTATAAACAGGTGGCAAGAAGTAGGAAAAGCAATGTATGCCCCTCCCATTAGAGGAAAAATTAGATGTTCATCAAATATTACAGGGTTACTATTAGTAAGAGATGGTGGTAACACGAGCGAGACTGAGACCTTCAGACCTGGAGGAGGAGATATGAAGGACAATTGGAGGAGTGAATTATATAAATATAAAGTAGAAAAAATTGAGCCATTAGGAGTAGCACCCACCAGGGCAAAGAGAAGAGTGGTGCAAAGAGAAAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAAGCCAGGCTGTTATTGTCTGGTATAGTGCAACAGCAAAACAATTTGCTGAGAGCTATTGAGGCGCAACAACATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTACAGGATCAACAGCGCCTGGGAATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCCTGGAATGCTAGTTGGAGTAATAAATCTCTGAATCAGATTTGGGATAACATGACCTGGATGGAGTGGGAAAGAGAAATTAACAATTACACAGACACAATATACACCTTAATTGAAAAGGCGCAGAACCAGCAGGAAAAAAATGAACAAGAATTATTGGAATTGGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAAATGGCTGTGGTACATAAAATTATTCATAATGATAGTAGGAGGATTGATAGGTTTAAGAATAGTTTTTGCTGTACTTGCTATAGTAAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGCCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAGCTTATTCAATGTCACAGCCATCGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAAGAGCTTGTAGAGCTCTTCTCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCATTGTTATAA +MK115503.1,tat_exon2,8370,8466,8376,8469,forward,0.3161764705882347,RPTSQPRGDPTGPKESKKKVEKETETDQFD,RPTSQPRGDPTGPKESKKKVEKETETDQFD**,AGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGA +MK115503.1,rev_exon2,8371,8656,8377,8653,forward,0.38952607660679506,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVPLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVPLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE*CY*,GACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGCCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAG +MK115503.1,nef,8790,9411,8796,9417,forward,0.49848743916874616,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPMSLHGMEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPMSLHGMEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC*H*,ATGGGGGGCAAGTGGTCAAAAAGTAGTGGGGGTGGATGGCCTGCTGTAAGGGAAAGAATGAGACGAACTGAGCCAGCAGCAGAAGGGGTGGGAGCAGTATCTCGAGACCTGGAAAGACATGGAGCAGTCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGCGCCTGGCTGGAAGCACAAGAAGAGGACAGTGAAGTGGGTTTTCCAGTCAGACCTCAGGTGCCTTTAAGACCAATGACTTTCAAAGGAGCTCTCGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCCCAAAAAAGACAAGATATCCTTGACCTGTGGGTCTACAACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGACCAGATATCCACTGACCTTTGGGTGGTGTTTCAAGCTAGTACCAGTGGAGCCAGAAGAGGCCAATCAAGGAGAGAACAACTGCTTGTTACACCCTATGAGCCTGCATGGGATGGAGGACCCGGAAAAAGAAGTATTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCACATGGCCCGAGAGAAGCATCCGGAGTACTACAAAGACTGCTGACATTGA +MK115570.1,gag,687,2193,789,2292,forward,0.28833792470156094,MGARASILSGGKLDEWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSANVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE,MGARASILSGGKLDEWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSANVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE*R*,ATGGGTGCGAGAGCGTCAATATTAAGCGGGGGAAAATTAGATGAATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATTTAGTATGGGCAAGCAGGGAGCTAGAACGATTTGCCGTTAACCCTGGCCTGTTAGAAACATCAGAGGGATGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATTTAATGCAGTAGCAGTCCTCTATTGTGTACATCAAAGGATACAGGTACAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGTAGCAGCAGCTGACACTGACACAGGAAACAGCAGCCAAAATTACCCCATAGTGCAGAACCTCCAGGGGCAAATGGTACATCAGCCCCTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAAAAGGCCTTCAGCCCAGAAGTCATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCTTGGGATTAAATAAAATAGTAAGGATGTATAGCCCTACCAGTATTCTGGATATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAGAACTTTAAGAGCTGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATTCGAATCCAGATTGTAAGACTATTTTAAAAGCATTAGGACCAGCAGCGACACTAGAGGAAATGATGACAGCATGTCAAGGAGTGGGGGGACCAGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAAATTCAGCTAATGTAATGATGCAGAGAGGCAATTTTAGAAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACATCAAATGAAAGACTGTACAGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAG +MK115570.1,pol,1979,4991,2084,5096,forward,0.1890827530448842,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAGGGGGGCAATTTAAAGAAGCTTTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACCCATAGAAATCTGTGGACACAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGCTTGGTTGTACCTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTCAATAAGAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAATTCCCTTAGATAAAGAATTCAGGAAGTATACTGCATTTACCATACCTAGTACAAATAATGAGACACCAGGGATTAGGTATGAGTACAATGTGCTGCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGCAAAATCCAGATATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAACTGAGACAACATCTGTTAAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAGTGGACAGTACAGCCTATAATACTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTACGCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAAGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTTTAAGAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGCAATGGACAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTACAAAAGATAGCCACAGAAAGCATAGTAATATGGGGAAAAACTCCTAAATTTAGACTACCTATACAAAAAGAAACATGGGAGACATGGTGGGCAGAGTACTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAATTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACTAAATTAGGCAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAGGTTATCTCCCTAACGGACACAACAAATCAAAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATCAGAAGTAAACATAGTAACAGACTCACAATATACATTAGGAATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAATCAGATAATAGAGCAGTTAATAAAAAAGGAAAAAGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGACAAACTAGTCAGTGCTGGAGTCAGGAGAGTACTATTTCTAGATGGAATAGATAAGGCCCAAGAAGACCATGAGAAATATCACAGTAATTGGAGAGCAATGGCTGGTGATTTTAATATACCCCCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCAAAAAGGAGAGGCCATGCATGGACAAGTAGATTGTAGTCCAGGAATATGGCAACTAGATTGTACACATCTAGAAGGGAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTCTCCTGAAACTAGCAGGGAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTAATGTGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCCATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTATAGTGCAGGGGAAAGAATAGTAGATATAATAGCAACAGACCTACAAACTAAAGAATTACAGAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGGAGAAAAGCAAAAATCATTAGGGATTATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG +MK115570.1,vif,4935,5514,5040,5619,forward,0.36355859709153127,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH*,ATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATGTTTCAAAGAAAACTAAAGGATGGTTTTATAGACATCACTATGAAAGCACTCATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTGGTAGTAACAACATATTGGGGCCTGAATACAGGAGAAAGAGAATGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGAAAAAGGAAATATAGCACACAAGTTGACCCTAACCTAGCAGACCAACTAATTCATCTGTATTATTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACATATAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGCTCTCTACAATACTTGGCACTAAAAGCATTAACAACACCAAAGAGAAGAAAGCCACCTTTACCTAGTGTTAGGAAACTGACAGAGGATAGATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAG +MK115570.1,vpr,5453,5747,5558,5850,forward,0.39444027047332864,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS*T,ATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAGAGCTTTTAGAGGAACTTAAGAATGAAGCGGTTAGACATTTTCCTAGGCCGTGGCTCCATGGCTTAGGACAACATATCTATGAAACTTATGGGGACACTTGGACAGGAGTGGAGGCCATAATAAGAACCCTGCAACAACTGCTGTTTATTCATTTCAGACTTGGGTGTCGACATAGCAGAATAGGCATTGTGCCACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACT +MK115570.1,tat_exon1,5724,5940,5830,6045,forward,0.31992687385740404,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ,ATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCACCCAGGAAGTCAGCCTAAAACTCCTTGTACTAACTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAAAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAG +MK115570.1,rev_exon1,5863,5941,5969,6045,forward,0.48200514138817474,MAGRSGDSDEELLKAVRLIKILYQSS,MAGRSGDSDEELLKAVRLIKILYQSS,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGT +MK115570.1,vpu,5955,6201,6061,6310,forward,0.5118110236220472,MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAEDSGNESEGDQEELSALMEMGHHAPGDVDDL,MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAEDSGNESEGDQEELSALMEMGHHAPGDVDDL*,ATGCAACCTCTGCACATAGCAGCAATAGTAGGATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGACCATAGTGTTAATAGAATATAGGAAAATATTAAGACAAAAAAGGATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAG +MK115570.1,env,6118,8659,6224,8795,forward,0.4446909136567194,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTSEAHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRNKMQKEYALFYKLDVVPIDKDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYENKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSGTETFRPGGGDMKDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTSEAHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRNKMQKEYALFYKLDVVPIDKDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYENKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSGTETFRPGGGDMKDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL*,ATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTGACAGTCTATTATGGGGTACCTGTATGGAAAGAAGCAAACACCACTCTATTTTGTGCATCGGATGCTAAAGCATATACCTCAGAGGCACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGGATTGGAAAATGTGACAGAAAATTTTAACATGTGGAAAAATAACATGGTAGAACAGATGCATGAGGATGTAATCAATTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCACTAATCTGAATGTTACTAATACCAATAGCAGTAGTGAGGAGGGAAAGATGGCGGAAGAAATGAGAAACTGCTCTTTCAATATCACCACAAAAATAAGAAATAAGATGCAGAAGGAATATGCACTTTTTTATAAACTTGATGTAGTACCAATAGATAAGGATAATACAAGTTATACATTGATAAATTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCTATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAGGATAAGAAGTTCAATGGATCAGGACCATGTAAAAATGTCAGCACAGTACAATGTACACATGGAATTAAGCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTTTAGCAGAAGAAGAGGTAGTAATTAGATCTGAAAATTTCACGAACAATGCTAAAACCATAATAGTACATCTGAAGGAACCTATACAAATTAATTGTACAAGACCCAACAACAATACAATGAAAAGTATCCCTCTAGGACCAGGAAGAGCATTCTATGCAACAGGAGCCATAATAGGAGATATAAGACAAGCACATTGTAACCTTAGTAGAAAAGCATGGAATAATACTTTAAAACAGGTAGTTGAAAAATTAAAAGAACAATATGAGAATAAAACAATAATCTTTAATCACTCCTCAGGAGGGGACCCAGAAATTATAATGCATACTTTTAATTGTGGAGGGGAATTTTTCTATTGTAATACAACACAGCTGTTTAATAGTACTTGGAATAGTACTTGGACTGGGAATGCTACCGAATTAGATGGAAACATCACACTCCCATGCAGAATAAAACAGATTATAAACAGGTGGCAAGAAGTAGGAAAAGCAATGTATGCCCCTCCCATTAGAGGAAAAATTAGATGTTCATCAAATATTACAGGGTTACTATTAGTAAGAGATGGTGGTAACACGAGCGGGACTGAGACCTTCAGACCTGGAGGAGGAGATATGAAGGACAATTGGAGGAGTGAATTATATAAATATAAAGTAGTAAAAATTGAGCCATTAGGAGTAGCACCCACCAGGGCAAAGAGAAGAGTGGTGCAAAGAGAAAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAAGCCAGGCTGTTATTGTCTGGTATAGTGCAACAGCAAAACAATTTGCTGAGAGCTATTGAGGCGCAACAACATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTACAGGATCAACAGCGCCTGGGAATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCCTGGAATGCTAGTTGGAGTAATAAATCTCTGAATCAGATTTGGGATAACATGACCTGGATGGAGTGGGAAAGAGAAATTAACAATTACACAGACACAATATACACCTTAATTGAAAAGGCGCAGAACCAGCAGGAAAAGAATGAACAAGAATTATTGGAATTGGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAAATGGCTGTGGTACATAAAATTATTCATAATGATAGTAGGAGGATTGATAGGTTTAAGAATAGTTTTTGCTGTACTTGCTATAGTAAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGCCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAGCTTATTCAATGTCACAGCCATCGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAAGAGCTTGTAGAGCTCTTCTCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCATTGTTATAA +MK115570.1,tat_exon2,8240,8336,8376,8469,forward,0.3161764705882347,RPTSQPRGDPTGPKESKKKVEKETETDQFD,RPTSQPRGDPTGPKESKKKVEKETETDQFD**,AGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGA +MK115570.1,rev_exon2,8241,8526,8377,8653,forward,0.38952607660679506,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVPLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVPLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE*CY*,GACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGCCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAG +MK115570.1,nef,8660,9281,8796,9417,forward,0.49848743916874616,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPMSLHGMEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPMSLHGMEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC*H*,ATGGGGGGCAAGTGGTCAAAAAGTAGTGGGGGTGGATGGCCTGCTGTAAGGGAAAGAATGAGACGAACTGAGCCAGCAGCAGAAGGGGTGGGAGCAGTATCTCGAGACCTGGAAAGACATGGAGCAGTCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGCGCCTGGCTGGAAGCACAAGAAGAGGACAGTGAAGTGGGTTTTCCAGTCAGACCTCAGGTGCCTTTAAGACCAATGACTTTCAAAGGAGCTCTCGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCCCAAAAAAGACAAGATATCCTTGACCTGTGGGTCTACAACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGACCAGATATCCACTGACCTTTGGGTGGTGTTTCAAGCTAGTACCAGTGGAGCCAGAAGAGGCCAATCAAGGAGAGAACAACTGCTTGTTACACCCTATGAGCCTGCATGGGATGGAGGACCCGGAAAAAGAAGTATTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCACATGGCCCGAGAGAAGCATCCGGAGTACTACAAAGACTGCTGACATTGA +MK115509.1,gag,555,2061,789,2292,forward,0.2932056543547651,MGARASILSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWTTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSANVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE,MGARASILSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWTTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSANVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE*R*,ATGGGTGCGAGAGCGTCAATATTAAGCGGGGGAAAATTAGATGCATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATTTAGTATGGGCAAGCAGGGAGCTAGAACGATTTGCCGTTAACCCTGGCCTGTTAGAAACATCAGAGGGATGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATTTAATGCAGTAGCAGTCCTCTATTGTGTACATCAAAGGATACAGGTACAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGTAGCAGCAGCTGACACTGACACAGGAAACAGCAGCCAAAATTACCCCATAGTGCAGAACCTCCAGGGGCAAATGGTACATCAGCCCCTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAAAAGGCCTTCAGCCCAGAAGTCATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGACGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCTTGGGATTAAATAAAATAGTAAGGATGTATAGCCCTACCAGTATTCTGGATATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAGAACTTTAAGAGCTGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATTCGAATCCAGATTGTAAGACTATTTTAAAAGCATTAGGACCAGCAGCAACACTAGAGGAAATGATGACAGCATGTCAAGGAGTGGGGGGACCAGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAAATTCAGCTAATGTAATGATGCAGAGAGGCAATTTTAGAAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACATCAAATGAAAGACTGTACAGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAG +MK115509.1,pol,1847,4859,2084,5096,forward,0.1922427454342348,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSTGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSTGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAGGGGGGCAATTTAAAGAAGCTTTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACCCATAGAAATCTGTGGACACAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGCTTGGTTGTACCTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTCAATAAGAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAATTCCCTTAGATAAAGAATTCAGGAAGTATACTGCATTTACCATACCTAGTACAAATAATGAGACACCAGGGATTAGGTATGAGTACAATGTGCTGCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGCAAAATCCAGATATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAACTGAGACAACATCTGTTAAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAGTGGACAGTACAGCCTATAATACTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTACGCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAGGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTTTAAGAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGCAATGGACAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTACAAAAGATAGCCACAGAAAGCATAGTAATATGGGGAAAAACTCCTAAATTTAGACTACCTATACAAAAAGAAACATGGGAGACATGGTGGGCAGAGTACTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAATTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACTAAATTAGGCAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAGGTTATCTCCCTAACGGACACAACAAATCAAAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATCAGAAGTAAACATAGTAACAGACTCACAATATACATTAGGAATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAATCAGATAATAGAGCAGTTAATAAAAAAGGAAAAAGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGACAAACTAGTCAGTACTGGAGTCAGGAGAGTACTATTTCTAGATGGAATAGATAAGGCCCAAGAAGACCATGAGAAATATCACAGTAATTGGAGAGCAATGGCTGGTGATTTTAATATACCCCCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCAAAAAGGAGAGGCCATGCATGGACAAGTAGATTGTAGTCCAGGAATATGGCAACTAGATTGTACACATCTAGAAGGGAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTCTCCTGAAACTAGCAGGGAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTAATGTGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCCATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTATAGTGCAGGGGAAAGAATAGTAGATATAATAGCAACAGACCTACAAACTAAAGAATTACAGAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGGAGAAAAGCAAAAATCATTAGGGATTATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG +MK115509.1,vif,4803,5382,5040,5619,forward,0.36355859709153127,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH*,ATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATGTTTCAAAGAAAACTAAAGGATGGTTTTATAGACATCACTATGAAAGCACTCATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTGGTAGTAACAACATATTGGGGCCTGAATACAGGAGAAAGAGAATGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGAAAAAGGAAATATAGCACACAAGTTGACCCTAACCTAGCAGACCAACTAATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACATATAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGCTCTCTACAATACTTGGCACTAAAAGCATTAACAACACCAAAGAGAAGAAAGCCACCTTTACCTAGTGTTAGGAAACTGACAGAGGATAGATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAG +MK115509.1,vpr,5321,5615,5558,5850,forward,0.39444027047332864,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS*T,ATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAGAGCTTTTAGAGGAACTTAAGAATGAAGCGGTTAGACATTTTCCTAGGCCGTGGCTCCATGGCTTAGGACAACATATCTATGAAACTTATGGGGACACTTGGACAGGAGTGGAGGCCATAATAAGAACCCTGCAACAACTGCTGTTTATTCATTTCAGACTTGGGTGTCGACATAGCAGAATAGGCATTGTGCCACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACT +MK115509.1,tat_exon1,5592,5808,5830,6045,forward,0.31992687385740404,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ,ATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCACCCAGGAAGTCAGCCTAAAACTCCTTGTACTAACTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAAAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAG +MK115509.1,rev_exon1,5731,5809,5969,6045,forward,0.48200514138817474,MAGRSGDSDEELLKAVRLIKILYQSS,MAGRSGDSDEELLKAVRLIKILYQSS,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGT +MK115509.1,vpu,5823,6069,6061,6310,forward,0.5254806794847863,MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAKDSGNESEGDQEELSALMEMGHHAPGDVDDL,MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAKDSGNESEGDQEELSALMEMGHHAPGDVDDL*,ATGCAACCTCTGCACATAGCAGCAATAGTAGGATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGACCATAGTGTTAATAGAATATAGGAAAATATTAAGACAAAAAAGGATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAAAAGACAGTGGCAATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAG +MK115509.1,env,5986,8527,6224,8795,forward,0.4421225244922844,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEAHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRNKMQKEYALFYKLDVVPIDNDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYENKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSETETFRPGGGDMKDNWRSELYKYKVEKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEAHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRNKMQKEYALFYKLDVVPIDNDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYENKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSETETFRPGGGDMKDNWRSELYKYKVEKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL*,ATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTGACAGTCTATTATGGGGTACCTGTATGGAAAGAAGCAAACACCACTCTATTTTGTGCATCGGATGCTAAAGCATATACCACAGAGGCACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGGATTGGAAAATGTGACAGAAAATTTTAACATGTGGAAAAATAACATGGTAGAACAGATGCATGAGGATGTAATCAATTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCACTAATCTGAATGTTACTAATACCAATAGCAGTAGTGAGGAGGGAAAGATGGCGGAAGAAATGAGAAACTGCTCTTTCAATATCACCACAAAAATAAGAAATAAGATGCAGAAGGAATATGCACTTTTTTATAAACTTGATGTAGTACCAATAGATAATGATAATACAAGTTATACATTGATAAATTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCTATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAGGATAAGAAGTTCAATGGATCAGGACCATGTAAAAATGTCAGCACAGTACAATGTACACATGGAATTAAGCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTTTAGCAGAAGAAGAGGTAGTAATTAGATCTGAAAATTTCACGAACAATGCTAAAACCATAATAGTACATCTGAAGGAACCTATACAAATTAATTGTACAAGACCCAACAACAATACAATGAAAAGTATCCCTCTAGGACCAGGAAGAGCATTCTATGCAACAGGAGCCATAATAGGAGATATAAGACAAGCACATTGTAACCTTAGTAGAAAAGCATGGAATAATACTTTAAAACAGGTAGTTGAAAAATTAAAAGAACAATATGAGAATAAAACAATAATCTTTAATCACTCCTCAGGAGGGGACCCAGAAATTATAATGCATACTTTTAATTGTGGAGGGGAATTTTTCTATTGTAATACAACACAGCTGTTTAATAGTACTTGGAATAGTACTTGGACTGGGAATGCTACCGAATTAGATGGAAACATCACACTCCCATGCAGAATAAAACAGATTATAAACAGGTGGCAAGAAGTAGGAAAAGCAATGTATGCCCCTCCCATTAGAGGAAAAATTAGATGTTCATCAAATATTACAGGGTTACTATTAGTAAGAGATGGTGGTAACACGAGCGAGACTGAGACCTTCAGACCTGGAGGAGGAGATATGAAGGACAATTGGAGGAGTGAATTATATAAATATAAAGTAGAAAAAATTGAGCCATTAGGAGTAGCACCCACCAGGGCAAAGAGAAGAGTGGTGCAAAGAGAAAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAAGCCAGGCTGTTATTGTCTGGTATAGTGCAACAGCAAAACAATTTGCTGAGAGCTATTGAGGCGCAACAACATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTACAGGATCAACAGCGCCTGGGAATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCCTGGAATGCTAGTTGGAGTAATAAATCTCTGAATCAGATTTGGGATAACATGACCTGGATGGAGTGGGAAAGAGAAATTAACAATTACACAGACACAATATACACCTTAATTGAAAAGGCGCAGAACCAGCAGGAAAAAAATGAACAAGAATTATTGGAATTGGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAAATGGCTGTGGTACATAAAATTATTCATAATGATAGTAGGAGGATTGATAGGTTTAAGAATAGTTTTTGCTGTACTTGCTATAGTAAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGCCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAGCTTATTCAATGTCACAGCCATCGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAAGAGCTTGTAGAGCTCTTCTCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCATTGTTATAA +MK115509.1,tat_exon2,8108,8204,8376,8469,forward,0.3161764705882347,RPTSQPRGDPTGPKESKKKVEKETETDQFD,RPTSQPRGDPTGPKESKKKVEKETETDQFD**,AGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGA +MK115509.1,rev_exon2,8109,8394,8377,8653,forward,0.38952607660679506,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVPLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVPLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE*CY*,GACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGCCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAG +MK115509.1,nef,8528,9149,8796,9417,forward,0.49848743916874616,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPMSLHGMEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPMSLHGMEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC*H*,ATGGGGGGCAAGTGGTCAAAAAGTAGTGGGGGTGGATGGCCTGCTGTAAGGGAAAGAATGAGACGAACTGAGCCAGCAGCAGAAGGGGTGGGAGCAGTATCTCGAGACCTGGAAAGACATGGAGCAGTCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGCGCCTGGCTGGAAGCACAAGAAGAGGACAGTGAAGTGGGTTTTCCAGTCAGACCTCAGGTGCCTTTAAGACCAATGACTTTCAAAGGAGCTCTCGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCCCAAAAAAGACAAGATATCCTTGACCTGTGGGTCTACAACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGACCAGATATCCACTGACCTTTGGGTGGTGTTTCAAGCTAGTACCAGTGGAGCCAGAAGAGGCCAATCAAGGAGAGAACAACTGCTTGTTACACCCTATGAGCCTGCATGGGATGGAGGACCCGGAAAAAGAAGTATTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCACATGGCCCGAGAGAAGCATCCGGAGTACTACAAAGACTGCTGACATTGA +MK115702.1,gag,246,1782,789,2292,forward,0.31612618574895324,MGARASVLSGGELDKWEKIRLRPGGRKRYKLKHIVWASRELERFAVNPGLLETSEGCKQIMGQLQPALQTGSEELRSLYNTVAVLYCVHQRIDVKDTKEALDKIEEEQNKSKKKTQQAAAADTGNNSQVSQNYPIVQNMQGQMVHQAISPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVQAGPVAPGQIREPRGSDIAGTTSTLQEQIAWMTHNPPVPVGEIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKGWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQGVGGPSHKARVLAEAMSQATGAHAIMMQRGNFKNQRKTVKCFNCGKEGHIARNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESLRPTAPPVESFRFGEETAAPFQKQEPRDKEMSPLASLKSLFGNDQ,MGARASVLSGGELDKWEKIRLRPGGRKRYKLKHIVWASRELERFAVNPGLLETSEGCKQIMGQLQPALQTGSEELRSLYNTVAVLYCVHQRIDVKDTKEALDKIEEEQNKSKKKTQQAAAADTGNNSQVSQNYPIVQNMQGQMVHQAISPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVQAGPVAPGQIREPRGSDIAGTTSTLQEQIAWMTHNPPVPVGEIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKGWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQGVGGPSHKARVLAEAMSQATGAHAIMMQRGNFKNQRKTVKCFNCGKEGHIARNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESLRPTAPPVESFRFGEETAAPFQKQEPRDKEMSPLASLKSLFGNDQ*SQ*,ATGGGTGCGAGAGCGTCAGTATTAAGCGGCGGCGAATTAGACAAATGGGAAAAAATTCGGTTAAGGCCAGGAGGAAGGAAACGATATAAATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGCTTCGCAGTCAACCCTGGCCTGTTAGAAACATCAGAAGGCTGCAAACAAATAATGGGACAACTCCAACCAGCCCTTCAGACAGGATCAGAAGAACTTAGATCATTATATAATACAGTAGCAGTCCTCTATTGTGTACATCAGAGGATAGATGTAAAGGATACCAAAGAAGCTTTAGACAAAATAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGACACAGCAAGCAGCAGCCGCTGACACAGGAAACAACAGCCAAGTCAGCCAAAATTACCCCATAGTGCAGAACATGCAGGGACAAATGGTACATCAGGCCATATCACCCAGAACCCTAAATGCATGGGTAAAAGTAATAGAAGAGAAGGCATTCAGCCCAGAAGTAATACCCATGTTTTCAGCACTATCAGAGGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATCAATGAGGAGGCTGCAGAATGGGATAGAGTGCATCCAGTGCAGGCAGGACCTGTTGCACCAGGCCAGATAAGGGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGATGACACATAATCCACCCGTCCCAGTAGGAGAAATCTATAAAAGATGGATAATCTTGGGACTAAATAAAATAGTAAGGATGTATAGCCCTGTCAGCATTTTGGACATAAGACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAAGACTCTAAGAGCTGAGCAAGCTTCACAGGAAGTAAAAGGTTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAACCCAGATTGTAAGACCATTTTAAAAGCATTGGGACCAGGAGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCCAGCCATAAGGCAAGGGTTTTGGCAGAAGCAATGAGCCAAGCAACAGGTGCACATGCCATAATGATGCAGAGAGGCAATTTTAAGAACCAAAGAAAGACTGTTAAGTGCTTCAATTGTGGCAAAGAAGGGCATATAGCCAGAAATTGCAGGGCCCCTAGGAAAAGGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGACTGCACTGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGAAGGCCGGGGAATTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAGGAGAGCCTCAGGCCAACAGCCCCACCAGTAGAGAGCTTCAGGTTTGGGGAAGAGACAGCAGCCCCCTTTCAGAAGCAGGAACCGAGAGACAAGGAGATGTCTCCCTTAGCTTCCCTCAAATCACTCTTTGGCAACGACCAGTAGTCACAATAA +MK115702.1,pol,1544,4586,2084,5096,forward,0.22669617986470358,FFRENLAFPQGKAGEFPSEQTRANSPTRGEPQANSPTSRELQVWGRDSSPLSEAGTERQGDVSLSFPQITLWQRPVVTIKIGGQIKEALLDTGADDTVLEEMALPGRWKPKMIGGIGGFIKVRQYDQIAIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKIKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPIFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSITVLDVGDAYFSVPLDEEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPEIVIYQYMDDLYVGSDLEIGQHRTKIEELRGHLLKWGFTTPDKKHQKEPPFLWMGYELHPDRWTVQPIKLPEKEIWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPTKELIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKISTESIVIWGKTPKFKLPIQKETWEIWWTDYWQATWIPEWEFVSTPPLVKLWYQLEKEPIVGAETFYVDGASNRETKLGKAGYITDRGRQKVVTLNDTTNQKTELQAILLALQDSGLEANIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKIYLTWVPAHKGIGGNEQVDKLVSTGIRKVLFLDGIDRAQEEHERYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQIDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSNFTSTTVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED,FFRENLAFPQGKAGEFPSEQTRANSPTRGEPQANSPTSRELQVWGRDSSPLSEAGTERQGDVSLSFPQITLWQRPVVTIKIGGQIKEALLDTGADDTVLEEMALPGRWKPKMIGGIGGFIKVRQYDQIAIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKIKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPIFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSITVLDVGDAYFSVPLDEEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPEIVIYQYMDDLYVGSDLEIGQHRTKIEELRGHLLKWGFTTPDKKHQKEPPFLWMGYELHPDRWTVQPIKLPEKEIWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPTKELIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKISTESIVIWGKTPKFKLPIQKETWEIWWTDYWQATWIPEWEFVSTPPLVKLWYQLEKEPIVGAETFYVDGASNRETKLGKAGYITDRGRQKVVTLNDTTNQKTELQAILLALQDSGLEANIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKIYLTWVPAHKGIGGNEQVDKLVSTGIRKVLFLDGIDRAQEEHERYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQIDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSNFTSTTVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGAAGGCCGGGGAATTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAGGAGAGCCTCAGGCCAACAGCCCCACCAGTAGAGAGCTTCAGGTTTGGGGAAGAGACAGCAGCCCCCTTTCAGAAGCAGGAACCGAGAGACAAGGAGATGTCTCCCTTAGCTTCCCTCAAATCACTCTTTGGCAACGACCAGTAGTCACAATAAAGATAGGGGGGCAAATAAAGGAAGCTCTATTAGACACAGGAGCAGATGATACAGTATTAGAAGAAATGGCGTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATAGCCATAGAAATTTGTGGACATAAAGCAATTGGTACAGTATTAGTAGGACCTACACCTGTCAATATAATTGGAAGAAATCTATTGACTCAGATTGGTTGCACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAGTTAAAGCCAGGAATGGATGGCCCAAAAATTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATAGGGCCTGAAAATCCATACAATACTCCAATATTTGCCATAAAGAAAAAAGACAGTACTAAGTGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGATTAAAAAAGAAAAAATCAATAACAGTACTGGATGTGGGTGATGCCTATTTTTCAGTTCCCTTAGATGAAGAATTCAGGAAGTATACTGCATTTACCATACCTAGCATAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAATGTAGCATGACAAAAATATTAGAGCCTTTTAGAAAACAAAATCCAGAAATAGTTATCTATCAATACATGGACGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAACTAAGAGGACATCTGTTGAAGTGGGGGTTTACCACACCAGACAAAAAACATCAGAAGGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAGATGGACAGTACAGCCTATAAAGCTGCCAGAGAAAGAAATCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTGAACTGGGCAAGTCAGATTTACCCAGGAATTAAAGTAAAACAATTATGTAAACTCCTTAGGGGAACCAAAGCATTAACAGAAGTAATACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGAGAAATTCTAAAAGAACCAGTACATGGAGTGTATTATGACCCAACAAAAGAATTAATAGCAGAAATACAGAAGCAAGGGCAAGGCCAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCGAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAGAAAATATCTACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTACCCATACAAAAGGAAACATGGGAAATATGGTGGACAGACTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTTAGTACTCCTCCCCTAGTAAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTATGTAGATGGGGCATCTAATAGGGAGACTAAATTAGGAAAAGCAGGATATATTACTGACAGAGGAAGACAAAAGGTTGTCACCCTAAATGACACAACCAATCAAAAGACAGAGTTACAAGCAATTCTTCTAGCATTGCAGGATTCAGGATTAGAAGCAAACATAGTGACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATAAAAGTGAATCAGAGTTAGTCAGTCAAATAATAGAGCAGTTAATAAAAAAGGAAAAGATCTACCTGACATGGGTACCAGCACATAAAGGAATTGGAGGAAATGAGCAAGTAGATAAATTAGTCAGTACTGGGATTAGGAAAGTATTATTTTTAGATGGAATAGATAGGGCCCAAGAAGAGCATGAGAGATATCACAGTAATTGGAGAGCAATGGCTAGTGATTTCAACCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGAGAAGCTATGCATGGACAAATAGACTGTAGTCCAGGAATATGGCAGCTAGATTGTACACACTTAGAAGGAAAAATTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAAACAGGGCAGGAAACAGCATACTTTATCTTAAAATTAGCAGGAAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTACCACAGTTAAGGCCGCCTGTTGGTGGGCGGGGGTCAAGCAGGAATTTGGTATTCCCTACAATCCCCAGAGTCAAGGAGTGGTAGAATCTATGAATAAAGAATTAAAGAAAATAATAGGACAGGTCAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAGTAGATATAATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATTTCAAAAATTCAAAACTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCGGTAGTAATACAGGATAATAGTGACATAAAAGTAGTGCCAAGAAGAAAAGCAAAAATCATTAGGGATTATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG +MK115702.1,vif,4530,5109,5040,5619,forward,0.3566796368352788,MANRWQVMIVWQVDRMRIRTWNSLVKHHMYVSKKTKGWFYRHHYESTHPKISSEVHIPLGDAELVVTTYWGLQPGERDWHLGQGVSIEWRKGRYRTHVDPNLADQLIHLHYFDCFSESAIRHAILGHRVSPRCEYQAGHNKVGSLQYLALAALRAPKKIKPPLPSVTKLTEDRWNKPQKTKGHRGSHTMNGH,MANRWQVMIVWQVDRMRIRTWNSLVKHHMYVSKKTKGWFYRHHYESTHPKISSEVHIPLGDAELVVTTYWGLQPGERDWHLGQGVSIEWRKGRYRTHVDPNLADQLIHLHYFDCFSESAIRHAILGHRVSPRCEYQAGHNKVGSLQYLALAALRAPKKIKPPLPSVTKLTEDRWNKPQKTKGHRGSHTMNGH*,ATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGTATGTTTCAAAGAAAACTAAGGGATGGTTTTATAGACATCACTATGAGAGCACTCATCCAAAAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTGAGTTGGTAGTAACAACATATTGGGGTTTGCAGCCAGGGGAAAGGGACTGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGAAAAGGGAGATATAGAACACACGTGGACCCTAACCTAGCAGACCAACTAATTCATCTGCATTACTTTGATTGTTTTTCAGAATCTGCTATAAGACATGCCATATTAGGACATAGAGTTAGCCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGATCTCTACAGTACTTGGCACTAGCAGCATTAAGAGCACCAAAAAAGATAAAGCCACCTTTGCCTAGTGTTACTAAACTAACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACACTAG +MK115702.1,vpr,5048,5342,5558,5850,forward,0.41636495293265796,MEQAPEDQGPQREPYNEWTLELLEELKQEAVRHFPRPWLHSLGQYIYETYGDTWAGVEAIIRMLQQLLFIHFRIGCQHSRIGIIPQRRARNGSSRS,MEQAPEDQGPQREPYNEWTLELLEELKQEAVRHFPRPWLHSLGQYIYETYGDTWAGVEAIIRMLQQLLFIHFRIGCQHSRIGIIPQRRARNGSSRS*P,ATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACACTAGAGCTTTTAGAAGAACTTAAGCAGGAAGCTGTTAGGCATTTTCCTAGGCCATGGCTTCATAGCTTAGGGCAATATATCTATGAAACTTATGGGGATACTTGGGCAGGGGTGGAAGCCATAATAAGAATGCTGCAACAACTGCTGTTTATTCATTTCAGAATTGGGTGTCAACATAGCAGAATAGGCATTATCCCACAGAGGAGAGCAAGAAATGGATCCAGTAGATCCTAACCT +MK115702.1,tat_exon1,5319,5535,5830,6045,forward,0.5047703572220991,MDPVDPNLEPWKHPGSQPKTACNNCYCKKCCLHCQVCFTRKGLGISYGRKKRRRRRGSLKGRQAHQDSLSKQ,MDPVDPNLEPWKHPGSQPKTACNNCYCKKCCLHCQVCFTRKGLGISYGRKKRRRRRGSLKGRQAHQDSLSKQ,ATGGATCCAGTAGATCCTAACCTAGAGCCCTGGAAGCATCCAGGAAGTCAGCCTAAGACTGCTTGTAACAATTGCTATTGTAAAAAGTGTTGCCTTCATTGCCAAGTTTGTTTCACACGAAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACGGAGACGAGGATCTCTTAAAGGCCGTCAGGCTCATCAAGACTCTCTATCAAAGCAG +MK115702.1,rev_exon1,5458,5536,5969,6045,forward,0.5657327586206896,MAGRSGDGDEDLLKAVRLIKTLYQSS,MAGRSGDGDEDLLKAVRLIKTLYQSS,ATGGCAGGAAGAAGCGGAGACGGAGACGAGGATCTCTTAAAGGCCGTCAGGCTCATCAAGACTCTCTATCAAAGCAGT +MK115702.1,vpu,5550,5808,6061,6310,forward,0.5656185919343815,MLSLEVIVAITALVVAGIIAIVVWTIVLIEYRKILRQRKIDKILDRIRERAEDSGNESEGDQEELSALVEMGHNAHHAPWDIND,MLSLEVIVAITALVVAGIIAIVVWTIVLIEYRKILRQRKIDKILDRIRERAEDSGNESEGDQEELSALVEMGHNAHHAPWDIND**,ATGTTATCTTTAGAAGTAATAGTAGCAATAACAGCATTAGTAGTAGCAGGAATAATAGCAATAGTTGTGTGGACCATAGTACTTATAGAATATAGGAAAATATTAAGACAAAGAAAAATAGACAAGATACTTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAGGGGGATCAGGAAGAATTGTCAGCGCTTGTGGAGATGGGGCACAATGCTCACCATGCTCCTTGGGATATTAATGATTAGTAA +MK115702.1,env,5716,8257,6224,8795,forward,0.4929200664997806,MRVRGIRKNCQRLWRWGTMLTMLLGILMISNATEQLWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEMVLINVTENFNMWKNDMVDQMQEDIVSLWDQSLKPCVKLTPLCVTLNCTNLTIEPNNATKANISGRLEGKGEMTNCSFNVTTSLRDKRKKEYALFYKLDVVATGENNNSFRLISCNTSEITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGKCNNVSIVQCTHGIRPVVSTQLLLNGSLAEEEVVVRSANFSDNTKTIIVQLNKTVVINCTRPNNNTRRSIHIAPGRAFYATGDIIGDIRKAHCNISKEDWNTTLNQVAKKLQEQFENATIDFKPSSGGDPEIVMHSFNCGGEFFYCNTTELFSWNATTKLFTWNATNSNNGTIILPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGGTNGTGNRNETFRPGGGNMKDNWRSELYKYKVVEIKPLGVAPTKAKRRVVQREKRAVTIGAMFLGFLGAAGSTMGAASLTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICTTTVPWNISWSNRTLNNIWDNLTWMQWDTEINNYTNKIYQLLEEAQNQQEKNEQELLELDKWANLWNWFDISNWLWYIKIFILIVGGLIGLRIVFTVLSIVNRVRQGYSPLSFQTRFPVPRGPDRPEGTEEEGGERDRDRSDRLVNGFLTLIWVDLRSLCLFSYHRLRDLLLIVTRIVELLGRRGWEALKYWWNVLQYWSQELKNSAVSLLNATAIVVAEGTDRIIELAQRICRAE,MRVRGIRKNCQRLWRWGTMLTMLLGILMISNATEQLWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEMVLINVTENFNMWKNDMVDQMQEDIVSLWDQSLKPCVKLTPLCVTLNCTNLTIEPNNATKANISGRLEGKGEMTNCSFNVTTSLRDKRKKEYALFYKLDVVATGENNNSFRLISCNTSEITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGKCNNVSIVQCTHGIRPVVSTQLLLNGSLAEEEVVVRSANFSDNTKTIIVQLNKTVVINCTRPNNNTRRSIHIAPGRAFYATGDIIGDIRKAHCNISKEDWNTTLNQVAKKLQEQFENATIDFKPSSGGDPEIVMHSFNCGGEFFYCNTTELFSWNATTKLFTWNATNSNNGTIILPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGGTNGTGNRNETFRPGGGNMKDNWRSELYKYKVVEIKPLGVAPTKAKRRVVQREKRAVTIGAMFLGFLGAAGSTMGAASLTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICTTTVPWNISWSNRTLNNIWDNLTWMQWDTEINNYTNKIYQLLEEAQNQQEKNEQELLELDKWANLWNWFDISNWLWYIKIFILIVGGLIGLRIVFTVLSIVNRVRQGYSPLSFQTRFPVPRGPDRPEGTEEEGGERDRDRSDRLVNGFLTLIWVDLRSLCLFSYHRLRDLLLIVTRIVELLGRRGWEALKYWWNVLQYWSQELKNSAVSLLNATAIVVAEGTDRIIELAQRICRAE*DRA*,ATGAGAGTGAGGGGGATCAGGAAGAATTGTCAGCGCTTGTGGAGATGGGGCACAATGCTCACCATGCTCCTTGGGATATTAATGATTAGTAATGCTACAGAACAATTGTGGGTCACAGTCTATTATGGGGTACCTGTATGGAAAGAAGCAACAACCACTCTATTCTGTGCATCAGATGCTAAAGCATATGATACAGAGGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAATGGTATTAATAAATGTGACAGAAAATTTTAACATGTGGAAAAATGACATGGTAGATCAAATGCAAGAGGACATAGTCAGCTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACCTTAAATTGCACTAATTTGACCATTGAGCCAAACAATGCTACTAAAGCCAATATTAGTGGGAGGTTAGAGGGGAAAGGAGAAATGACAAACTGCTCTTTCAATGTCACCACAAGCCTAAGAGATAAGAGGAAGAAAGAATATGCACTCTTTTATAAACTTGATGTAGTAGCAACAGGTGAAAATAATAACAGCTTTAGGTTGATAAGTTGTAATACCTCAGAGATTACACAGGCCTGTCCAAAGGTATCATTTGAACCAATTCCCATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAATGATAAAAAGTTCAATGGAACAGGAAAATGTAACAATGTCAGCATAGTACAATGTACACATGGAATTAGGCCAGTAGTATCAACTCAACTGCTGTTAAATGGCAGTCTAGCAGAAGAAGAGGTAGTAGTTAGATCTGCCAATTTCTCAGACAATACTAAGACCATAATAGTACAGCTGAACAAAACTGTAGTAATTAATTGTACAAGACCCAACAACAATACAAGGAGAAGTATACATATAGCACCAGGGAGAGCATTTTATGCAACAGGAGATATAATAGGAGATATAAGAAAAGCACATTGTAACATTAGTAAAGAAGATTGGAATACCACTTTAAACCAGGTGGCTAAAAAATTACAAGAACAATTTGAGAATGCAACAATAGACTTTAAACCATCCTCAGGAGGGGACCCAGAAATTGTAATGCACAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAATACAACGGAACTATTTTCTTGGAATGCTACAACAAAACTGTTTACTTGGAATGCTACAAATAGCAATAATGGAACCATCATACTCCCATGTAGAATAAAACAAATTATAAACATGTGGCAAGAGGTAGGAAAAGCAATGTATGCCCCTCCCATTCGTGGACAAATTAGATGTTCGTCAAATATTACAGGACTGCTATTAACAAGAGATGGTGGGACTAACGGGACAGGGAACAGGAATGAGACCTTCAGACCTGGAGGGGGAAATATGAAGGACAATTGGAGAAGTGAATTATATAAATACAAAGTAGTAGAAATTAAACCATTAGGAGTAGCACCCACCAAGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGACCATAGGAGCTATGTTCCTTGGGTTCCTGGGGGCAGCAGGAAGCACTATGGGCGCAGCATCACTGACGCTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAACAGCAGAACAATCTGCTGAGGGCGATTGAGGCGCAGCAGCATCTGTTGCAACTCACAGTCTGGGGCATAAAACAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGGTACCTAAGAGATCAACAGCTCCTGGGGATTTGGGGCTGCTCTGGAAAACTCATCTGCACCACTACTGTGCCTTGGAATATTAGTTGGAGTAATAGAACTCTGAATAACATTTGGGACAATTTGACTTGGATGCAGTGGGATACAGAAATTAACAATTACACAAACAAAATATACCAATTACTTGAGGAAGCGCAGAACCAGCAGGAAAAGAATGAACAAGAATTATTGGAATTAGATAAATGGGCAAATTTGTGGAATTGGTTTGACATATCAAACTGGCTGTGGTACATAAAAATATTCATATTAATAGTAGGAGGCTTAATAGGTTTAAGAATAGTTTTTACTGTACTTTCTATAGTGAATAGAGTTAGGCAGGGATACTCACCATTATCGTTTCAGACCCGCTTCCCAGTCCCGAGGGGACCCGACAGGCCCGAAGGAACCGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGACAGATTAGTGAACGGATTCTTGACACTTATCTGGGTCGATCTGAGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCACTCAAATATTGGTGGAATGTCCTGCAATATTGGAGTCAGGAACTAAAGAATAGTGCTGTTAGCTTGCTAAATGCCACAGCCATAGTAGTAGCTGAGGGGACAGATAGGATTATAGAATTAGCACAAAGAATTTGTAGAGCAGAATAAGACAGGGCTTGA +MK115702.1,tat_exon2,7874,7970,8376,8469,forward,0.5255102040816324,RPASQSRGDPTGPKEPKKKVERETETDPTD,RPASQSRGDPTGPKEPKKKVERETETDPTD**,AGACCCGCTTCCCAGTCCCGAGGGGACCCGACAGGCCCGAAGGAACCGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGACAGATTAGTGA +MK115702.1,rev_exon2,7875,8160,8377,8653,forward,0.3471418653089562,DPLPSPEGTRQARRNRRRRWRERQRQIRQISERILDTYLGRSEEPVPLQLPPLERLTLDCNEDCGTSGTQGVGSTQILVECPAILESGTKE,DPLPSPEGTRQARRNRRRRWRERQRQIRQISERILDTYLGRSEEPVPLQLPPLERLTLDCNEDCGTSGTQGVGSTQILVECPAILESGTKE*CC*,GACCCGCTTCCCAGTCCCGAGGGGACCCGACAGGCCCGAAGGAACCGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGACAGATTAGTGAACGGATTCTTGACACTTATCTGGGTCGATCTGAGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCACTCAAATATTGGTGGAATGTCCTGCAATATTGGAGTCAGGAACTAAAGAATAGTGCTGTTAG +MK115702.1,nef,8275,8896,8796,9417,forward,0.5150705837466587,MGGKWSKHSKSEWADVRERMAQTEAAADGVGAVSRDLERHGAITSSNTATNNAACAWLEAQEEEEVGFPVKPQVPLRPMTYKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRFPLCFGWCFKLVPVDPDKVEEANKGENNSLLHPMSLHGMEDTEREVLMWKFDSRLAFHHVAREKHPEYFKDC,MGGKWSKHSKSEWADVRERMAQTEAAADGVGAVSRDLERHGAITSSNTATNNAACAWLEAQEEEEVGFPVKPQVPLRPMTYKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRFPLCFGWCFKLVPVDPDKVEEANKGENNSLLHPMSLHGMEDTEREVLMWKFDSRLAFHHVAREKHPEYFKDC*,ATGGGTGGCAAGTGGTCAAAACATAGTAAGAGTGAATGGGCTGATGTAAGGGAAAGAATGGCACAAACTGAGGCAGCAGCAGATGGGGTGGGAGCAGTATCTCGAGATCTGGAAAGACATGGAGCAATCACAAGTAGCAATACAGCAACTAACAATGCTGCTTGTGCTTGGCTAGAAGCACAAGAGGAGGAGGAGGTGGGTTTTCCAGTCAAACCTCAGGTGCCTTTGAGACCAATGACCTACAAGGGAGCTTTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGTTAATTTATTCCCAAAAAAGACAAGACATCCTTGATCTGTGGGTCTACAACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGAACCAGATTCCCACTGTGCTTTGGATGGTGCTTCAAGCTAGTACCAGTTGATCCAGATAAGGTGGAAGAAGCCAATAAAGGAGAGAACAACAGCTTGTTACACCCTATGAGCCTGCATGGGATGGAGGACACCGAGAGAGAGGTGTTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCACGTAGCCAGAGAGAAACATCCGGAGTACTTCAAGGACTGCTGA +MK115095.1,gag,2,1697,789,2292,forward,0.7478034493979825,MTETLLVQNANPDCKTILKALRPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTKSASIMVQGGNLKNQRKNVKCFNCGKEGHTAKNCRAPKKKGC,SGFSFTFKSLFGRHLGDLKAKEKPEELSRRRTRLAERARQEARRGD**VRRNF*LAEARRREIGARASVLSGGELDR*EKIYLRPGRKKKYRLKHIVWASRELERFAVNPGLLKSSEGCRQILGQLQPALQTGSEELRSLYNTIAVLYCVHQKINVKDTKEALDKIEEEQNKSKKKAQQAAADTGNSSNSQVSQNYPIVQNLQGQIVHQPISPRTLNA*VKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVRRHQAAMQMLKETINDEAAE*DRLHPVHAGPIAPGQMKEPRRSDIAGTTSTLQEQIR*MTNNPPIPVGEIYKR*IILRLNKIVKMYSPVSILDIRQRPKEPFKDYVDRFYKTLKAEQASQDVKN*MTETLLVQNANPDCKTILKALRPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTKSASIMVQGGNLKNQRKNVKCFNCGKEGHTAKNCRAPKKKGC*KCGKKGHQMKDCTKRQANFLRKIWPSHKGRPKNFLQSRPEPTAPPAESFRFKEEATAPPQKQETKDQELYPLASLRSLFGNDP*YQ*,TCTGGTTTCTCTTTCACTTTCAAGTCCCTGTTCGGGCGCCATCTAGGGGACCTGAAAGCGAAAGAGAAACCAGAGGAGCTCTCTCGACGCAGGACTCGGCTTGCTGAGCGCGCACGGCAAGAGGCGAGGCGCGGCGACTAGTGAGTACGCCGAAATTTTTGACTAGCAGAGGCTAGAAGGAGAGAGATAGGTGCGAGAGCGTCAGTATTAAGCGGCGGAGAATTAGATAGATAGGAAAAAATTTACCTAAGGCCAGGGAGAAAGAAAAAATATAGATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTCAACCCTGGCCTGTTAAAGTCATCAGAAGGCTGCAGGCAAATTCTAGGACAGCTACAACCAGCCCTTCAGACAGGATCAGAAGAACTTAGATCATTATATAATACAATAGCAGTCCTCTATTGTGTACATCAAAAGATAAATGTAAAAGACACCAAAGAAGCTCTAGACAAAATAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAACAAGCAGCAGCTGACACAGGAAACAGCAGCAACAGCCAGGTCAGCCAAAATTACCCTATAGTGCAGAACCTACAAGGGCAAATAGTACATCAACCCATATCACCTAGAACTTTAAATGCATAGGTAAAAGTAATAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCACTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGAGAAGACATCAAGCAGCCATGCAGATGTTAAAAGAAACCATCAATGATGAAGCTGCAGAATAAGATAGATTGCATCCAGTGCATGCAGGCCCTATTGCACCAGGCCAGATGAAGGAACCAAGAAGAAGTGACATAGCAGGAACCACTAGTACCCTTCAGGAACAAATAAGATAGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATAGATAATCCTGAGGTTAAATAAAATAGTAAAAATGTATAGCCCTGTCAGCATTTTGGACATAAGACAAAGACCAAAGGAACCCTTTAAGGATTATGTAGACCGGTTCTATAAAACTCTAAAGGCTGAACAAGCGTCACAGGATGTAAAAAATTAGATGACAGAAACCTTGTTAGTCCAAAATGCGAATCCAGATTGTAAGACCATTTTAAAAGCATTAAGACCAGCAGCTACATTAGAAGAAATGATGACAGCATGTCAGGGAGTAGGAGGACCCGGCCACAAGGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAACAAAGTCAGCCTCCATAATGGTGCAAGGAGGCAATTTAAAGAACCAAAGAAAGAATGTTAAGTGTTTCAATTGTGGCAAAGAAGGACACACAGCCAAAAATTGCAGGGCCCCTAAGAAAAAAGGCTGTTAGAAATGTGGAAAGAAAGGACACCAAATGAAAGATTGTACTAAGAGACAGGCTAATTTTTTAAGGAAGATTTGGCCTTCCCACAAGGGAAGGCCAAAGAATTTTCTCCAGAGCAGACCAGAGCCAACAGCCCCGCCAGCAGAGAGCTTCAGGTTTAAGGAAGAGGCAACAGCTCCCCCTCAGAAGCAGGAGACGAAGGACCAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCATAATATCAATAA +MK115095.1,pol,1489,4579,2084,5096,forward,0.7624366800883231,KPKIIEGIRGFIKVRQYDQVPIKICRHKAISTVLIRPTPVNIIRRNLLTQLSCTLNFPISPIETVPVKLKPGIDSPKVKQWPLTEEKIKALIEICAEIEKERKITKIRPKNPYNTPVFAIKKKDSTK,FFKEDLAFPQGKAKEFSPEQTRANSPASRELQV*GRGNSSPSEAGDEGPGTVSFSFPQITLWQRPIISIKIRRQLKEALLDTGADDTVLKEINLPGK*KPKIIEGIRGFIKVRQYDQVPIKICRHKAISTVLIRPTPVNIIRRNLLTQLSCTLNFPISPIETVPVKLKPGIDSPKVKQWPLTEEKIKALIEICAEIEKERKITKIRPKNPYNTPVFAIKKKDSTK*RKLVDFRELNKRTQDF*KVQLRIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNEAPRVRYQYNVLPQR*KGSPAIFQSSMTKILEPFRKENPDIVIYQYIDDLYVRSDLEIEQHRTKIEELRQHLLK*RLTTPDKKHQKEPPFL*ISYELHPNKWTVQPIQLPDKDS*TVNDIQKLVRKLN*ASQIYPEIKVKQLCKLLRRTKALTEVVPLTEEAELELAENKEILKEPVHRAYYDPSKDLIAEVQKQGGDQWTYQIYQKPFKNLKTKKYARTRGAHTNDVKQLTEAVQKIALEAIVI*RKTPKFKLPIQKET*EM**TEYWQAT*IPE*EFVNTPPLVKL*YQLEKEPIVRAETFYVDRAANRETKLRKARYVTDRRRQKVVSLIDTTNQRTKLHAIHLALQDSGSTVNIVTDSQYALKIIQAQPDKSESELVSQIIEQLIKKEKIYLA*VPAHKRIRRNEQVDKLVSSRIRKVLFLDRIDKAQEEHEKYHSN*RAMASDFNLPPVVAKEIVASCDKCQLKREPMHGQVDCSPGIWQLDCTHLERKIILVAVHVASRYIEAEVIAAETGQETAYFILKLAGRWPVKIIHTDNGSNFTSTTVKAAC**ARIKQKFSIPYNPQSQGVVESMNNELKKIIGQVKDQAEHLKTAVQMAVFIHNFKRKRGIGGYSAEERIIDIIATDIQTKELQKQISKIQNFQVYYRDSREPLWKGPAKLL*KGEGAVVIQDNSDIKVVPRRKAKILRDYGKQMAGDDCVASRQDED*NMEQFSKTPYAYFKESSEMSLQTSP*,TTTTTTAAGGAAGATTTGGCCTTCCCACAAGGGAAGGCCAAAGAATTTTCTCCAGAGCAGACCAGAGCCAACAGCCCCGCCAGCAGAGAGCTTCAGGTTTAAGGAAGAGGCAACAGCTCCCCCTCAGAAGCAGGAGACGAAGGACCAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCATAATATCAATAAAAATAAGAAGGCAACTAAAAGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAAAAGAAATAAATTTGCCAGGAAAATAGAAACCAAAAATAATAGAAGGAATTAGAGGTTTTATCAAAGTAAGACAGTATGATCAGGTACCCATAAAAATTTGTAGACATAAAGCTATAAGTACAGTATTAATAAGACCTACACCAGTCAACATAATTAGAAGAAATCTGTTGACCCAGCTTAGTTGCACTTTAAATTTTCCCATCAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATAGATAGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAGGCATTAATAGAAATTTGTGCAGAAATAGAAAAAGAAAGGAAAATTACAAAAATTAGGCCTAAGAATCCATATAATACTCCAGTGTTTGCCATAAAGAAAAAAGACAGTACTAAATAGAGAAAATTAGTAGATTTCCGAGAACTTAATAAAAGAACACAAGACTTTTAAAAAGTTCAACTAAGAATACCACATCCCGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTAGATGTAGGTGATGCATATTTTTCAGTTCCTTTAGACAAAGACTTCAGAAAGTATACTGCATTTACCATACCCAGTATAAACAATGAGGCACCAAGAGTTAGATATCAGTACAATGTGCTTCCACAAAGATAGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAAGAAAATCCAGACATAGTTATCTATCAATACATAGATGATTTGTATGTAAGATCTGACTTAGAAATAGAGCAGCACAGAACAAAAATAGAAGAACTGAGACAACATCTGTTAAAGTAAAGACTCACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTTCTTTAGATAAGTTATGAACTCCATCCTAATAAATGGACAGTACAGCCTATACAGCTGCCAGACAAAGACAGCTAGACTGTCAATGACATACAGAAGTTAGTAAGAAAGTTAAATTAGGCAAGCCAGATCTATCCAGAGATTAAAGTAAAGCAATTATGTAAACTCCTTAGAAGAACCAAAGCACTAACAGAAGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAAGGAGATTCTAAAAGAACCAGTACATAGAGCATATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGAGGAGACCAATGGACATATCAAATTTATCAGAAGCCATTTAAAAATCTGAAAACAAAGAAATATGCAAGAACGAGAGGTGCCCACACTAATGATGTAAAACAGTTAACAGAGGCAGTGCAAAAAATAGCCCTAGAAGCCATAGTAATATAGAGAAAGACTCCTAAATTTAAACTACCTATACAAAAAGAAACATAAGAAATGTAGTAGACAGAGTATTGGCAAGCCACCTAGATTCCTGAGTAGGAATTTGTCAATACCCCTCCCTTAGTAAAATTATAGTACCAGTTAGAGAAAGAACCCATAGTAAGAGCAGAAACTTTCTATGTAGATAGGGCAGCTAATAGAGAGACTAAATTAAGAAAAGCAAGGTATGTTACGGACAGAAGAAGACAAAAAGTTGTCTCCCTAATAGACACAACAAATCAGAGGACTAAGTTACACGCAATTCATCTAGCTTTGCAGGATTCAGGATCAACAGTAAACATAGTGACAGACTCACAATATGCCTTAAAGATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAGTCAAATAATAGAGCAGCTAATAAAAAAAGAAAAAATTTACCTGGCATAAGTCCCAGCACACAAAAGAATTAGAAGAAATGAACAAGTAGATAAATTAGTCAGTAGTAGAATCAGAAAAGTACTATTTCTAGATAGAATAGATAAAGCCCAAGAAGAACATGAAAAATATCACAGTAATTAAAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAGTGTCAGTTAAAAAGAGAACCTATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAACTAGATTGTACACATTTAGAAAGAAAAATTATCCTAGTAGCAGTTCATGTAGCCAGTAGATACATAGAAGCAGAAGTTATTGCAGCAGAAACAGGGCAGGAAACAGCATACTTTATCTTAAAATTGGCAGGAAGATGGCCAGTAAAAATAATACATACAGACAATGGCAGCAATTTCACCAGCACTACAGTTAAGGCCGCCTGTTAGTAGGCAAGGATCAAGCAGAAATTTAGTATTCCCTACAATCCTCAAAGTCAAGGAGTAGTAGAATCTATGAATAATGAATTAAAGAAAATTATAGGACAGGTAAAAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATTCACAATTTTAAAAGAAAAAGGGGGATTGGGGGGTACAGTGCAGAGGAAAGAATAATAGACATAATAGCAACAGACATACAAACTAAAGAACTACAAAAACAAATTTCAAAAATTCAAAATTTTCAGGTTTATTACAGGGACAGCAGAGAACCACTTTGGAAAGGACCAGCAAAGCTCCTCTAGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATCCTTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAAGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATATTTCAAAGAAAGCTCAGAGATGAGTTTACAGACATCACCATGA +MK115095.1,vif,4445,5024,5040,5619,forward,0.7494633160752622,MENRWQVMIVWQVDKMRIRTWNSLVKHHMHISKKAQR,MENRWQVMIVWQVDKMRIRTWNSLVKHHMHISKKAQR*VYRHHHESHNPKTSSEVHIPLREARLVIKTY*GLHTGERDWHLGQGVSIEWRKKRYSTQVDPGLADQLIHLYYFDCFSESAIRNAILGHRVRPRCEYQAGHNKVGSLQYLALTALITPKRRKPPLPSVTKLTEDRWNKSQRTKGHKRSHTMNGH*,ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAAGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATATTTCAAAGAAAGCTCAGAGATGAGTTTACAGACATCACCATGAAAGCCATAATCCAAAAACAAGTTCAGAAGTACACATCCCATTAAGGGAAGCAAGATTAGTAATAAAAACATATTAAGGTCTGCATACAGGAGAAAGAGACTGGCATTTAGGCCAGGGAGTATCCATAGAATGGAGGAAAAAGAGATATAGCACACAAGTAGACCCTGGCCTGGCAGACCAACTAATTCACCTGTATTATTTTGATTGTTTTTCAGAATCTGCTATAAGGAATGCCATATTAGGACATAGAGTTAGGCCTAGGTGTGAATATCAGGCAGGACATAACAAGGTAGGATCCCTACAATACTTGGCATTAACAGCATTAATAACACCAAAAAGGAGAAAGCCACCTTTGCCCAGTGTTACAAAATTAACAGAGGACAGATGGAACAAGTCCCAGAGGACCAAAGGCCACAAAAGGAGCCATACAATGAATGGACATTAG +MK115095.1,vpr,4963,5257,5558,5850,forward,0.4901960784313728,MEQVPEDQRPQKEPYNEWTLELLEELKSEAVRHFPRPWLHSLGQYIYETYGDTWAEVEAIIRTLQQLLFIHFRIRCQHSRIRIIRQRRARNRASRS,MEQVPEDQRPQKEPYNEWTLELLEELKSEAVRHFPRPWLHSLGQYIYETYGDTWAEVEAIIRTLQQLLFIHFRIRCQHSRIRIIRQRRARNRASRS*L,ATGGAACAAGTCCCAGAGGACCAAAGGCCACAAAAGGAGCCATACAATGAATGGACATTAGAGCTCTTAGAAGAACTTAAGAGTGAAGCTGTTAGGCATTTTCCTAGACCATGGCTTCATAGCTTAGGACAATATATCTATGAAACTTATGGAGATACTTGGGCAGAGGTAGAAGCCATAATAAGAACCCTGCAACAACTGTTGTTCATTCATTTCAGAATTAGGTGTCAACATAGCAGGATAAGAATTATTCGACAGAGGAGAGCAAGAAATAGAGCCAGTAGATCCTAACTT +MK115095.1,tat_exon1,5288,5453,5830,6045,forward,0.6444161223514419,MTACNNCYCKRCCFHCQVCFTRKGLGISHGRKKRRQRRRASHSSQNHQAALPEQ,MTACNNCYCKRCCFHCQVCFTRKGLGISHGRKKRRQRRRASHSSQNHQAALPEQ*,ATGACTGCTTGTAACAATTGCTATTGTAAACGGTGTTGCTTTCATTGCCAAGTTTGCTTCACAAGAAAAGGCTTAGGCATCTCCCATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTTCTCACAGCAGTCAGAATCATCAAGCGGCTCTACCAGAGCAGTAA +MK115095.1,rev_exon1,5373,5451,5969,6045,forward,0.5132850241545894,MAGRSGDSDEELLTAVRIIKRLYQSS,MAGRSGDSDEELLTAVRIIKRLYQSS,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTTCTCACAGCAGTCAGAATCATCAAGCGGCTCTACCAGAGCAGT +MK115095.1,vpu,5465,5711,6061,6310,forward,0.6860565641595653,SIVLIEYKKILRQKKIDRLIDRIRERAEDSGNESDEDQEELSAIVEIGHLVP,MHALEIAAIVRLVVAAIIAIVV*SIVLIEYKKILRQKKIDRLIDRIRERAEDSGNESDEDQEELSAIVEIGHLVP*DSDDM*,ATGCATGCCTTAGAAATAGCAGCAATAGTAAGATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTAGTCTATAGTATTAATAGAATATAAGAAAATTTTAAGACAAAAGAAAATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAAAGTGACGAGGACCAGGAAGAATTATCAGCAATTGTAGAGATAGGGCATCTTGTTCCTTAGGATAGTGATGATATGTAG +MK115095.1,env,5628,8229,6224,8795,forward,0.7512234451465316,MTEEGEIKNCSFNVTTGIRDKVTKEHALFYKLDVVPIDESSGNTTGKYRMINCNTSVITQACPKVSFEPIPIHFCAPASFAILKCKDKKFNRTGECRNVSTVQCTHRIRPVVSTQLLLNGSLAEEEIVIRSANLSNNAKTIIVQLNKSVKINCTRPNNNTRRSIHIGPRRAFYRTDIIGDIRQAHCNISRKD,MKVTRTRKNYQQL*R*GILFLRIVMICSANNL*VTVYYEVPVWKEATTTLFCASDAKAYKTEKHNVWATHACVPTDPSPQEVALENVTETFNMWKNDMVEQMHEDIISL*DQSLKPCVKLTPLCVTLNCTDELNLNCPNNNTCSNNTKYNMTEEGEIKNCSFNVTTGIRDKVTKEHALFYKLDVVPIDESSGNTTGKYRMINCNTSVITQACPKVSFEPIPIHFCAPASFAILKCKDKKFNRTGECRNVSTVQCTHRIRPVVSTQLLLNGSLAEEEIVIRSANLSNNAKTIIVQLNKSVKINCTRPNNNTRRSIHIGPRRAFYRTDIIGDIRQAHCNISRKD*NDTLKQIVIKLKEKFKNKTIVFNQSSGKDPEIVMHSFNCREEFFYCNTTQLFNST*NNNT*NGTDN*NSTESNSTITLPCRIKQIINLWQEVRRAMYAPPIQGQIRCSSNITGLLLVRDSKSNNSSNDTKTFRPRRGDMKDN*RSELYKYKVVKIEPLRIAPTHAKRRVVQKEKRAIGLRAFFLKFLGAAGSTIGAASVTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTV*GIKQLQARVLALERYLKDQQLLKI*GCSRKLICTTNVP*NVS*SPR*NRSLDKI*TNMT*KQ*EKEIDNYTDTIYNLIEQSQNQQEQNEQDLLALDK*ASL*N*FDITQWL*YIKIFIMIVRGLISLRIVFTILSIVNRVRQRYSPLSLQTLLPTQRGPDRPERTEEGGREKDRGTSTRLVHRFLALI*DDLRSLFLFSYHRLRDLLLIVARIVELLRRRK*EALKYW*NLLQY*SQEIKNSAVSLLNTTAIAVAERTDKIIEVLQRGFRAILHIPTRIRQGLEKALL*,ATGAAAGTGACGAGGACCAGGAAGAATTATCAGCAATTGTAGAGATAGGGCATCTTGTTCCTTAGGATAGTGATGATATGTAGTGCCAACAACTTGTAGGTCACAGTCTATTATGAGGTACCTGTATGGAAAGAAGCAACTACCACTCTATTTTGTGCATCAGATGCTAAAGCATATAAGACAGAGAAGCATAATGTTTGGGCAACCCATGCCTGTGTACCCACAGACCCCAGCCCACAGGAAGTAGCATTAGAAAATGTGACAGAAACATTTAACATGTGGAAAAATGACATGGTAGAGCAGATGCATGAGGATATAATCAGTTTATAAGATCAAAGCCTAAAGCCATGTGTGAAACTAACCCCACTCTGTGTTACTTTAAATTGCACTGATGAATTAAATCTAAATTGCCCTAACAATAATACTTGTAGTAATAATACTAAATATAATATGACGGAAGAAGGAGAAATAAAAAACTGCTCTTTCAATGTCACCACAGGAATAAGAGATAAGGTGACAAAAGAACATGCACTTTTCTATAAACTTGATGTAGTACCAATAGATGAAAGTAGTGGAAATACTACAGGCAAATATAGGATGATAAATTGTAACACCTCAGTCATTACACAAGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTTTTGTGCCCCGGCTAGTTTTGCGATTCTAAAGTGTAAAGATAAGAAATTCAATAGAACAGGAGAATGTAGAAATGTCAGCACAGTACAATGTACACATAGAATTAGGCCAGTAGTATCAACTCAACTGCTGCTGAACGGCAGTCTAGCAGAAGAAGAGATAGTAATTAGATCTGCCAATCTCTCGAACAATGCTAAAACCATAATAGTACAGCTGAATAAATCTGTAAAAATTAATTGTACAAGACCCAACAATAATACAAGAAGAAGTATACACATAGGACCAAGGAGGGCATTTTATAGAACAGACATAATAGGAGATATAAGACAAGCGCATTGTAACATTAGTAGGAAAGATTAGAATGACACTTTAAAACAGATAGTTATAAAATTAAAAGAAAAATTTAAGAATAAAACAATAGTCTTTAATCAATCCTCAGGAAAGGACCCAGAGATAGTGATGCATAGTTTTAATTGTAGAGAAGAATTTTTCTACTGTAATACAACACAGCTGTTTAATAGTACTTAGAATAATAATACTTAGAATGGTACTGATAATTAGAATAGTACTGAATCAAATAGCACTATCACACTCCCATGCAGAATAAAACAAATTATAAACTTGTGGCAGGAAGTAAGAAGAGCAATGTATGCCCCTCCCATCCAAGGGCAAATTAGATGTTCATCAAATATTACAGGGCTGCTGCTAGTAAGAGATAGTAAGAGCAACAATAGTAGTAATGATACAAAGACCTTCAGGCCTAGAAGAGGAGATATGAAGGACAATTAGAGAAGTGAATTATATAAATATAAAGTAGTCAAAATTGAACCATTAAGAATAGCACCCACCCATGCAAAGAGAAGAGTGGTGCAGAAAGAAAAAAGAGCAATAGGACTTAGAGCTTTCTTCCTTAAGTTCTTAGGAGCAGCAGGAAGCACTATAGGCGCAGCGTCAGTGACGCTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAGCAGCAAAACAATTTGCTGAGAGCTATTGAGGCGCAACAGCATCTGTTGCAACTCACAGTCTAAGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTTTAGAAAGATACCTAAAAGATCAACAGCTCCTGAAGATTTGAGGTTGCTCTAGAAAACTCATTTGCACCACTAATGTGCCCTAAAATGTTAGTTAGAGCCCTAGATAGAATAGATCTCTAGATAAGATTTAGACTAACATGACCTAGAAGCAGTAGGAAAAAGAAATTGACAATTATACAGACACAATATATAACTTAATTGAACAATCACAGAACCAACAAGAACAGAATGAACAAGACTTATTAGCATTAGATAAGTAGGCAAGTTTGTAGAATTAGTTTGACATTACACAGTGGCTATAGTATATAAAAATATTCATAATGATAGTAAGAGGCTTGATAAGTTTAAGAATAGTTTTTACTATACTGTCTATAGTGAATAGAGTTAGGCAGAGATACTCACCATTGTCATTGCAGACCCTCCTCCCAACCCAGAGGGGACCCGACAGGCCCGAAAGAACAGAAGAAGGAGGTAGAGAGAAAGACAGAGGCACATCCACGAGATTAGTGCATAGATTCTTAGCACTCATCTAGGACGACCTGCGGAGCCTGTTCCTCTTCAGTTACCACCGCTTGAGAGACTTACTCTTGATTGTGGCGAGGATTGTAGAACTTCTAAGACGCAGAAAGTAAGAAGCACTGAAGTATTGGTAGAATCTCCTGCAGTATTAGAGTCAGGAAATAAAGAATAGTGCAGTTAGCTTGCTCAACACCACAGCAATAGCAGTAGCTGAAAGGACAGATAAGATTATAGAAGTATTACAAAGAGGCTTTAGAGCTATTCTCCACATACCTACACGAATAAGACAGGGCTTAGAAAAAGCTTTGCTATAA +MK115095.1,tat_exon2,7810,7903,8376,8469,forward,0.439759036144578,RPSSQPRGDPTGPKEQKKEVERKTEAHPRD,RPSSQPRGDPTGPKEQKKEVERKTEAHPRD*,AGACCCTCCTCCCAACCCAGAGGGGACCCGACAGGCCCGAAAGAACAGAAGAAGGAGGTAGAGAGAAAGACAGAGGCACATCCACGAGATTAG +MK115095.1,rev_exon2,7811,8087,8377,8653,forward,0.6667847862036381,ILSTHLGRPAEPVPLQLPPLERLTLDCGEDCRTSKTQKVRSTEVLVESPAVLESGNKE,DPPPNPEGTRQARKNRRRR*RERQRHIHEISA*ILSTHLGRPAEPVPLQLPPLERLTLDCGEDCRTSKTQKVRSTEVLVESPAVLESGNKE*,GACCCTCCTCCCAACCCAGAGGGGACCCGACAGGCCCGAAAGAACAGAAGAAGGAGGTAGAGAGAAAGACAGAGGCACATCCACGAGATTAGTGCATAGATTCTTAGCACTCATCTAGGACGACCTGCGGAGCCTGTTCCTCTTCAGTTACCACCGCTTGAGAGACTTACTCTTGATTGTGGCGAGGATTGTAGAACTTCTAAGACGCAGAAAGTAAGAAGCACTGAAGTATTGGTAGAATCTCCTGCAGTATTAGAGTCAGGAAATAAAGAATAG +MK115095.1,nef,8287,8878,8796,9417,forward,0.6122241431912931,MRQARPVRKPEPAATKVRAASRDLERHGALTSSNTAATNADVACLEAQQEEKEVGFPVRPQVPLRPMTYKGALDISHFLKEKGGLDGLIYSKRRQDILDLWLYNTQGYFPDWQNYTPRPGVRFPLCFRWCFKLVPVDPDKVEEASVGENNCLLSPENLHRIEDEHREVLQWRFDSRLAFHHVARELHPEYYKDC,MRQARPVRKPEPAATKVRAASRDLERHGALTSSNTAATNADVACLEAQQEEKEVGFPVRPQVPLRPMTYKGALDISHFLKEKGGLDGLIYSKRRQDILDLWLYNTQGYFPDWQNYTPRPGVRFPLCFRWCFKLVPVDPDKVEEASVGENNCLLSPENLHRIEDEHREVLQWRFDSRLAFHHVARELHPEYYKDC*H*,ATGAGACAAGCTAGGCCAGTAAGAAAGCCAGAGCCAGCAGCAACTAAGGTAAGAGCAGCATCTCGAGACCTAGAAAGACATGGAGCACTTACAAGTAGCAATACAGCAGCTACCAATGCTGATGTTGCCTGCCTAGAAGCACAACAGGAAGAAAAAGAGGTAGGTTTTCCAGTCAGACCTCAGGTACCTTTAAGGCCAATGACTTACAAAGGAGCTCTAGATATTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGATGGGCTAATTTACTCCAAAAGAAGACAAGACATCCTTGATCTGTGGCTCTACAACACACAAGGCTACTTCCCTGACTGGCAGAACTACACACCAAGGCCAGGAGTCAGATTTCCACTGTGTTTTAGATGGTGCTTCAAGCTAGTACCAGTTGATCCAGATAAGGTAGAAGAGGCCAGTGTAGGAGAGAACAACTGCTTGTTAAGCCCCGAAAACCTGCATAGAATAGAAGACGAACACAGAGAAGTATTGCAGTGGAGGTTTGACAGCCGCCTAGCATTTCATCACGTGGCCCGAGAGCTGCATCCGGAGTATTACAAGGACTGCTGACACTAA +MK115490.1,gag,549,2055,789,2292,forward,0.2932056543547651,MGARASILSGGKLDSWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSVNVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE,MGARASILSGGKLDSWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSVNVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE*R*,ATGGGTGCGAGAGCGTCAATATTAAGCGGGGGAAAATTAGATTCATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATTTAGTATGGGCAAGCAGGGAGCTAGAACGATTTGCCGTTAACCCTGGCCTGTTAGAAACATCAGAGGGATGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATTTAATGCAGTAGCAGTCCTCTATTGTGTACATCAAAGGATACAGGTACAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGTAGCAGCAGCTGACACTGACACAGGAAACAGCAGCCAAAATTACCCCATAGTGCAGAACCTCCAGGGGCAAATGGTACATCAGCCCCTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAAAAGGCCTTCAGCCCAGAAGTCATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGTCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCTTGGGATTAAATAAAATAGTAAGGATGTATAGCCCTACCAGTATTCTGGATATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAGAACTTTAAGAGCTGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATTCGAATCCAGATTGTAAGACTATTTTAAAAGCATTAGGACCAGCAGCAACACTAGAGGAAATGATGACAGCATGTCAAGGAGTGGGGGGACCAGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAAATTCAGTTAATGTAATGATGCAAAGAGGCAATTTTAGAAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACATCAAATGAAAGACTGTACAGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAG +MK115490.1,pol,1841,4853,2084,5096,forward,0.1922427454342348,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVHQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVHQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAGGGGGGCAATTTAAAGAAGCTTTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACCCATAGAAATCTGTGGACACAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGCTTGGTTGTACCTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTCAATAAGAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAATTCCCTTAGATAAAGAATTCAGGAAGTATACTGCATTTACCATACCTAGTACAAATAATGAGACACCAGGGATTAGGTATGAGTACAATGTGCTGCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGCAAAATCCAGATATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAACTGAGACAACATCTGTTAAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAGTGGACAGTACAGCCTATAATACTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTACGCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAGGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTTTAAGAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGCAATGGACAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTACAAAAGATAGCCACAGAAAGCATAGTAATATGGGGAAAAACTCCTAAATTTAGACTACCTATACAAAAAGAAACGTGGGAGACATGGTGGGCAGAGTACTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAATTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACTAAATTAGGCAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAGGTTATCTCCCTAACGGACACAACAAATCAAAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATCAGAAGTAAACATAGTAACAGACTCACAATATACATTAGGAATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCCATCAGATAATAGAGCAGTTAATAAAAAAGGAAAAAGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGACAAACTAGTCAGTGCTGGAGTCAGGAGAGTACTATTTCTAGATGGAATAGATAAGGCCCAAGAAGACCATGAGAAATATCACAGTAATTGGAGAGCAATGGCTGGTGATTTTAATATACCCCCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCAAAAAGGAGAGGCCATGCATGGACAAGTAGATTGTAGTCCAGGAATATGGCAACTAGATTGTACACATCTAGAAGGGAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTCTCCTGAAACTAGCAGGGAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTAATGTGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCCATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTATAGTGCAGGGGAAAGAATAGTAGATATAATAGCAACAGACCTACAAACTAAAGAATTACAGAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGGAGAAAAGCAAAAATCATTAGGGATTATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG +MK115490.1,vif,4797,5376,5040,5619,forward,0.37360555672490003,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPDLADQLIHLYYFDCFSESAIRNAILGHIVNPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPDLADQLIHLYYFDCFSESAIRNAILGHIVNPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH*,ATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATGTTTCAAAGAAAACTAAAGGATGGTTTTATAGACATCACTATGAAAGCACACATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTGGTAGTAACAACATATTGGGGCCTGAATACAGGAGAAAGAGAATGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGAAAAAGGAAATATAGCACACAAGTTGACCCTGACCTAGCAGACCAACTAATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACATATAGTTAATCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGCTCTCTACAATACTTGGCACTAAAAGCATTAACAACACCAAAGAGAAGAAAGCCACCTTTACCTAGTGTTAGGAAACTGACAGAGGATAGATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAG +MK115490.1,vpr,5315,5609,5558,5850,forward,0.39444027047332864,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS*T,ATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAGAGCTTTTAGAGGAACTTAAGAATGAAGCGGTTAGACATTTTCCTAGGCCGTGGCTCCATGGCTTAGGACAACATATCTATGAAACTTATGGGGACACTTGGACAGGAGTGGAGGCCATAATAAGAACCCTGCAACAACTGCTGTTTATTCATTTCAGACTTGGGTGTCGACATAGCAGAATAGGCATTGTGCCACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACT +MK115490.1,tat_exon1,5586,5802,5830,6045,forward,0.31992687385740404,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ,ATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCACCCAGGAAGTCAGCCTAAAACTCCTTGTACTAACTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAAAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAG +MK115490.1,rev_exon1,5725,5803,5969,6045,forward,0.48200514138817474,MAGRSGDSDEELLKAVRLIKILYQSS,MAGRSGDSDEELLKAVRLIKILYQSS,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGT +MK115490.1,vpu,5817,6063,6061,6310,forward,0.5118110236220472,MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAEDSGNESEGDQEELSALMEMGHHAPGDVDDL,MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAEDSGNESEGDQEELSALMEMGHHAPGDVDDL*,ATGCAACCTCTGCACATAGCAGCAATAGTAGGATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGACCATAGTGTTAATAGAATATAGGAAAATATTAAGACAAAAAAGGATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAG +MK115490.1,env,5980,8521,6224,8795,forward,0.4435264018789581,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTESHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSKEGKMAEEMRNCSFNITTEIRNKMQKEYALFYKLDVVPIDDDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYGNKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSGTETFRPGGGDMKDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTESHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSKEGKMAEEMRNCSFNITTEIRNKMQKEYALFYKLDVVPIDDDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYGNKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSGTETFRPGGGDMKDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL*,ATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTGACAGTCTATTATGGGGTACCTGTATGGAAAGAAGCAAACACCACTCTATTTTGTGCATCGGATGCTAAAGCATATACCACAGAGTCACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGGATTGGAAAATGTGACAGAAAATTTTAATATGTGGAAAAATAACATGGTAGAACAGATGCATGAGGATGTAATCAATTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCACTAATCTGAATGTTACTAATACCAATAGCAGTAGTAAGGAGGGAAAGATGGCGGAAGAAATGAGAAACTGCTCTTTCAATATCACCACAGAAATAAGAAATAAGATGCAGAAGGAATATGCACTTTTTTATAAACTTGATGTAGTACCAATAGATGATGATAATACAAGTTATACATTGATAAATTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCTATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAGGATAAGAAGTTCAATGGATCAGGACCATGTAAAAGTGTCAGCACAGTACAATGTACACATGGAATTAAGCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTTTAGCAGAAGAAGAGGTAGTAATTAGATCTGAAAATTTCACGAACAATGCTAAAACCATAATAGTACATCTGAAGGAACCTATACAAATTAATTGTACAAGACCCAACAACAATACAATGAAAAGTATCCCTCTAGGACCAGGAAGAGCATTCTATGCAACAGGAGCCATAATAGGAGATATAAGACAAGCACATTGTAACCTTAGTAGAAAAGCATGGAATAATACTTTAAAACAGGTAGTTGAAAAATTAAAAGAACAATATGGGAATAAAACAATAATCTTTAATCACTCCTCAGGAGGGGACCCAGAAATTATAATGCATACTTTTAATTGTGGAGGGGAATTTTTCTATTGTAATACAACACAGCTGTTTAATAGTACTTGGAATAGTACTTGGACTGGGAATGCTACCGAATTAGATGGAAACATCACACTCCCATGCAGAATAAAACAGATTATAAACAGGTGGCAAGAAGTAGGAAAAGCAATGTATGCCCCTCCCATTAGAGGAAAAATTAGATGTTCATCAAATATTACAGGGTTACTATTAGTAAGAGATGGTGGTAACACGAGCGGGACTGAGACCTTCAGACCTGGAGGAGGAGATATGAAGGACAATTGGAGGAGTGAATTATATAAATATAAAGTAGTAAAAATTGAGCCATTAGGAGTAGCACCCACCAGGGCAAAGAGAAGAGTGGTGCAAAGAGAAAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAAGCCAGGCTGTTATTGTCTGGTATAGTGCAACAGCAAAACAATTTGCTGAGAGCTATTGAGGCGCAACAACATCTATTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTACAGGATCAACAGCGCCTGGGAATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCCTGGAATGCTAGTTGGAGTAATAAATCTCTGAATCAGATTTGGGATAACATGACCTGGATGGAGTGGGAAAGAGAAATTAACAATTACACAGACACAATATACACCTTAATTGAAAAGGCGCAGAACCAGCAGGAAAAGAATGAACAAGAATTATTGGAATTGGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAAATGGCTGTGGTACATAAAATTATTCATAATGATAGTAGGAGGATTGATAGGTTTAAGAATAGTTTTTGCTGTACTTGCTATAGTAAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGTCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAGCTTATTCAATGTCACAGCCATCGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAAGAGCTTGTAGAGCTCTTCTCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCATTGTTATAA +MK115490.1,tat_exon2,8102,8198,8376,8469,forward,0.3161764705882347,RPTSQPRGDPTGPKESKKKVEKETETDQFD,RPTSQPRGDPTGPKESKKKVEKETETDQFD**,AGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGA +MK115490.1,rev_exon2,8103,8388,8377,8653,forward,0.40871934604904625,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVSLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVSLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE*CY*,GACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGTCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAG +MK115490.1,nef,8522,9143,8796,9417,forward,0.48839393532805264,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTYKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPTSLHGVEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTYKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPTSLHGVEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC*H*,ATGGGGGGCAAGTGGTCAAAAAGTAGTGGGGGTGGATGGCCTGCTGTAAGGGAAAGAATGAGACGAACTGAGCCAGCAGCAGAAGGGGTGGGAGCAGTATCTCGAGACCTGGAAAGACATGGAGCAGTCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGCGCCTGGCTGGAAGCACAAGAAGAGGACAGTGAAGTGGGTTTTCCAGTCAGACCTCAGGTGCCTTTAAGACCAATGACTTACAAAGGAGCTCTCGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCCCAAAAAAGACAAGATATCCTTGACCTGTGGGTCTACAACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGACCAGATATCCACTGACCTTTGGGTGGTGTTTCAAGCTAGTACCAGTGGAGCCAGAAGAGGCCAATCAAGGAGAGAACAACTGCTTGTTACACCCTACGAGCCTGCATGGGGTGGAGGACCCGGAAAAAGAAGTATTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCACATGGCCCGAGAGAAGCATCCGGAGTACTACAAAGACTGCTGACATTGA +MK115576.1,gag,468,1974,789,2292,forward,0.2932056543547651,MGARASILSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWTTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSANVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE,MGARASILSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWTTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSANVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE*R*,ATGGGTGCGAGAGCGTCAATATTAAGCGGGGGAAAATTAGATGCATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATTTAGTATGGGCAAGCAGGGAGCTAGAACGATTTGCCGTTAACCCTGGCCTGTTAGAAACATCAGAGGGATGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATTTAATGCAGTAGCAGTCCTCTATTGTGTACATCAAAGGATACAGGTACAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGTAGCAGCAGCTGACACTGACACAGGAAACAGCAGCCAAAATTACCCCATAGTGCAGAACCTCCAGGGGCAAATGGTACATCAGCCCCTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAAAAGGCCTTCAGCCCAGAAGTCATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGACGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCTTGGGATTAAATAAAATAGTAAGGATGTATAGCCCTACCAGTATTCTGGATATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAGAACTTTAAGAGCTGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATTCGAATCCAGATTGTAAGACTATTTTAAAAGCATTAGGACCAGCAGCAACACTAGAGGAAATGATGACAGCATGTCAAGGAGTGGGGGGACCAGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAAATTCAGCTAATGTAATGATGCAGAGAGGCAATTTTAGAAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACATCAAATGAAAGACTGTACAGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAG +MK115576.1,pol,1760,4772,2084,5096,forward,0.1922427454342348,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSTGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED,FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSTGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAGGGGGGCAATTTAAAGAAGCTTTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACCCATAGAAATCTGTGGACACAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGCTTGGTTGTACCTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTCAATAAGAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAATTCCCTTAGATAAAGAATTCAGGAAGTATACTGCATTTACCATACCTAGTACAAATAATGAGACACCAGGGATTAGGTATGAGTACAATGTGCTGCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGCAAAATCCAGATATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAACTGAGACAACATCTGTTAAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAGTGGACAGTACAGCCTATAATACTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTACGCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAGGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTTTAAGAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGCAATGGACAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTACAAAAGATAGCCACAGAAAGCATAGTAATATGGGGAAAAACTCCTAAATTTAGACTACCTATACAAAAAGAAACATGGGAGACATGGTGGGCAGAGTACTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAATTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACTAAATTAGGCAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAGGTTATCTCCCTAACGGACACAACAAATCAAAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATCAGAAGTAAACATAGTAACAGACTCACAATATACATTAGGAATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAATCAGATAATAGAGCAGTTAATAAAAAAGGAAAAAGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGACAAACTAGTCAGTACTGGAGTCAGGAGAGTACTATTTCTAGATGGAATAGATAAGGCCCAAGAAGACCATGAGAAATATCACAGTAATTGGAGAGCAATGGCTGGTGATTTTAATATACCCCCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCAAAAAGGAGAGGCCATGCATGGACAAGTAGATTGTAGTCCAGGAATATGGCAACTAGATTGTACACATCTAGAAGGGAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTCTCCTGAAACTAGCAGGGAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTAATGTGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCCATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTATAGTGCAGGGGAAAGAATAGTAGATATAATAGCAACAGACCTACAAACTAAAGAATTACAGAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGGAGAAAAGCAAAAATCATTAGGGATTATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG +MK115576.1,vif,4716,5295,5040,5619,forward,0.36355859709153127,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH,MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH*,ATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATGTTTCAAAGAAAACTAAAGGATGGTTTTATAGACATCACTATGAAAGCACTCATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTGGTAGTAACAACATATTGGGGCCTGAATACAGGAGAAAGAGAATGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGAAAAAGGAAATATAGCACACAAGTTGACCCTAACCTAGCAGACCAACTAATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACATATAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGCTCTCTACAATACTTGGCACTAAAAGCATTAACAACACCAAAGAGAAGAAAGCCACCTTTACCTAGTGTTAGGAAACTGACAGAGGATAGATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAG +MK115576.1,vpr,5234,5528,5558,5850,forward,0.39444027047332864,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS,MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS*T,ATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAGAGCTTTTAGAGGAACTTAAGAATGAAGCGGTTAGACATTTTCCTAGGCCGTGGCTCCATGGCTTAGGACAACATATCTATGAAACTTATGGGGACACTTGGACAGGAGTGGAGGCCATAATAAGAACCCTGCAACAACTGCTGTTTATTCATTTCAGACTTGGGTGTCGACATAGCAGAATAGGCATTGTGCCACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACT +MK115576.1,tat_exon1,5505,5721,5830,6045,forward,0.31992687385740404,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ,ATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCACCCAGGAAGTCAGCCTAAAACTCCTTGTACTAACTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAAAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAG +MK115576.1,rev_exon1,5644,5722,5969,6045,forward,0.48200514138817474,MAGRSGDSDEELLKAVRLIKILYQSS,MAGRSGDSDEELLKAVRLIKILYQSS,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGT +MK115576.1,vpu,5736,5982,6061,6310,forward,0.5254806794847863,MQPLHIAAIVGLIVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAEDSGNESEGDQEELSALMEMGHHAPGDVDDL,MQPLHIAAIVGLIVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAEDSGNESEGDQEELSALMEMGHHAPGDVDDL*,ATGCAACCTCTGCACATAGCAGCAATAGTAGGATTAATAGTAGCAGCAATAATAGCAATAGTTGTGTGGACCATAGTGTTAATAGAATATAGGAAAATATTAAGACAAAAAAGGATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAG +MK115576.1,env,5899,8440,6224,8795,forward,0.4415354827847462,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTPEAHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRNKMQKEYALFYKLDVVPIDNDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYENKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSETETFRPGGGDMKDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL,MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTPEAHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRNKMQKEYALFYKLDVVPIDNDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYENKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSETETFRPGGGDMKDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL*,ATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTGACAGTCTATTATGGGGTACCTGTATGGAAAGAAGCAAACACCACTCTATTTTGTGCATCGGATGCTAAAGCATATACCCCAGAGGCACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGGATTGGAAAATGTGACAGAAAATTTTAACATGTGGAAAAATAACATGGTAGAACAGATGCATGAGGATGTAATCAATTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCACTAATCTGAATGTTACTAATACCAATAGCAGTAGTGAGGAGGGAAAGATGGCGGAAGAAATGAGAAACTGCTCTTTCAATATCACCACAAAAATAAGAAATAAGATGCAGAAGGAATATGCACTTTTTTATAAACTTGATGTAGTACCAATAGATAATGATAATACAAGTTATACATTGATAAATTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCTATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAGGATAAGAAGTTCAATGGATCAGGACCATGTAAAAATGTCAGCACAGTACAATGTACACATGGAATTAAGCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTTTAGCAGAAGAAGAGGTAGTAATTAGATCTGAAAATTTCACGAACAATGCTAAAACCATAATAGTACATCTGAAGGAACCTATACAAATTAATTGTACAAGACCCAACAACAATACAATGAAAAGTATCCCTCTAGGACCAGGAAGAGCATTCTATGCAACAGGAGCCATAATAGGAGATATAAGACAAGCACATTGTAACCTTAGTAGAAAAGCATGGAATAATACTTTAAAACAGGTAGTTGAAAAATTAAAAGAACAATATGAGAATAAAACAATAATCTTTAATCACTCCTCAGGAGGGGACCCAGAAATTATAATGCATACTTTTAATTGTGGAGGGGAATTTTTCTATTGTAATACAACACAGCTGTTTAATAGTACTTGGAATAGTACTTGGACTGGGAATGCTACCGAATTAGATGGAAACATCACACTCCCATGCAGAATAAAACAGATTATAAACAGGTGGCAAGAAGTAGGAAAAGCAATGTATGCCCCTCCCATTAGAGGAAAAATTAGATGTTCATCAAATATTACAGGGTTACTATTAGTAAGAGATGGTGGTAACACGAGCGAGACTGAGACCTTCAGACCTGGAGGAGGAGATATGAAGGACAATTGGAGGAGTGAATTATATAAATATAAAGTAGTAAAAATTGAGCCATTAGGAGTAGCACCCACCAGGGCAAAGAGAAGAGTGGTGCAAAGAGAAAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAAGCCAGGCTGTTATTGTCTGGTATAGTGCAACAGCAAAACAATTTGCTGAGAGCTATTGAGGCGCAACAACATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTACAGGATCAACAGCGCCTGGGAATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCCTGGAATGCTAGTTGGAGTAATAAATCTCTGAATCAGATTTGGGATAACATGACCTGGATGGAGTGGGAAAGAGAAATTAACAATTACACAGACACAATATACACCTTAATTGAAAAGGCGCAGAACCAGCAGGAAAAGAATGAACAAGAATTATTGGAATTGGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAAATGGCTGTGGTACATAAAATTATTCATAATGATAGTAGGAGGATTGATAGGTTTAAGAATAGTTTTTGCTGTACTTGCTATAGTAAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGCCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAGCTTATTCAATGTCACAGCCATCGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAAGAGCTTGTAGAGCTCTTCTCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCATTGTTATAA +MK115576.1,tat_exon2,8021,8117,8376,8469,forward,0.3161764705882347,RPTSQPRGDPTGPKESKKKVEKETETDQFD,RPTSQPRGDPTGPKESKKKVEKETETDQFD**,AGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGA +MK115576.1,rev_exon2,8022,8307,8377,8653,forward,0.38952607660679506,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVPLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE,DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVPLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE*CY*,GACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGCCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAG +MK115576.1,nef,8441,9062,8796,9417,forward,0.49848743916874616,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPTSLHGMEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC,MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPTSLHGMEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC*H*,ATGGGGGGCAAGTGGTCAAAAAGTAGTGGGGGTGGATGGCCTGCTGTAAGGGAAAGAATGAGACGAACTGAGCCAGCAGCAGAAGGGGTGGGAGCAGTATCTCGAGACCTGGAAAGACATGGAGCAGTCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGCGCCTGGCTGGAAGCACAAGAAGAGGACAGTGAAGTGGGTTTTCCAGTCAGACCTCAGGTGCCTTTAAGACCAATGACTTTCAAAGGAGCTCTCGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCCCAAAAAAGACAAGATATCCTTGACCTGTGGGTCTACAACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGACCAGATATCCACTGACCTTTGGGTGGTGTTTCAAGCTAGTACCAGTGGAGCCAGAAGAGGCCAATCAAGGAGAGAACAACTGCTTGTTACACCCTACGAGCCTGCATGGGATGGAGGACCCGGAAAAAGAAGTATTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCACATGGCCCGAGAGAAGCATCCGGAGTACTACAAAGACTGCTGACATTGA +OQ092466,gag,825,2361,789,2292,forward,0.21199796644636482,MGARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPSLLETAEGCRQILGQLQPSLQTGSEELKSLYNTLATLYCVHQRIEVKDTKEALEKIEEEQNKSKKKAQQAAADTGNSSQVRHTGNSSQVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTSNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSHVTNSSAIMMQRGNFRNQRKAVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPPEEIFRFVEETTTPSQKQEPIDKELYPPLASLKSLFGNDPSSQ,MGARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPSLLETAEGCRQILGQLQPSLQTGSEELKSLYNTLATLYCVHQRIEVKDTKEALEKIEEEQNKSKKKAQQAAADTGNSSQVRHTGNSSQVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTSNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSHVTNSSAIMMQRGNFRNQRKAVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPPEEIFRFVEETTTPSQKQEPIDKELYPPLASLKSLFGNDPSSQ*,ATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAGAATTGGATAGATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAAATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTTAACCCTAGCCTGTTAGAAACAGCAGAAGGCTGTAGACAAATATTGGGACAGTTACAACCGTCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATATAATACATTAGCAACCCTCTATTGTGTGCATCAAAGGATAGAGGTAAAAGACACCAAGGAAGCCTTAGAGAAGATAGAGGAAGAGCAAAACAAAAGCAAGAAAAAGGCACAGCAAGCAGCAGCTGACACAGGAAACAGCAGCCAGGTTAGACACACAGGAAACAGCAGCCAGGTCAGCCAAAATTACCCTATAGTACAGAACCTTCAGGGGCAAATGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAATACCATGCTAAATACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATCAATGAGGAAGCTGCAGAATGGGATAGACTACATCCAGTGCATGCAGGGCCCATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGATGACAAGTAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGGATGTATAGTCCTACCAGCATTCTGGACATAAGACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAAAACTCTAAGAGCCGAGCAAGCTACACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAACCCAGATTGTAAGACTATCTTAAAAGCATTGGGACCAGCAGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTAGGGGGACCCGGACATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCACGTAACAAATTCAAGTGCCATAATGATGCAGAGGGGCAATTTTAGAAACCAAAGAAAGGCTGTTAAGTGTTTCAATTGTGGCAAAGAGGGGCATATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGATTGTACTGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAATTTTCTCCAGAGCAGACCAGAGCCAACAGCCCCACCACCAGAAGAGATCTTCAGGTTTGTGGAAGAGACAACAACTCCCTCTCAGAAACAGGAGCCAATAGACAAGGAACTGTATCCTCCTTTAGCTTCCCTCAAATCACTCTTTGGCAACGACCCCTCGTCACAATAA +OQ092466,pol,2147,5165,2084,5096,forward,0.1880239208210378,FFRENLAFPQRKAREFSPEQTRANSPTTRRDLQVCGRDNNSLSETGANRQGTVSSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMNLPGRWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPYRTRNPEMVIYQYMDDLYVGSDLEIGQHRAKIEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPNKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTEVVPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGEGQWTFQIYQEPFKNLKTGKYARARGAHTNDVKQLTEAVQKIATEGIVIWGKIPKFRLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKKGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIEKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQIIKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED,FFRENLAFPQRKAREFSPEQTRANSPTTRRDLQVCGRDNNSLSETGANRQGTVSSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMNLPGRWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPYRTRNPEMVIYQYMDDLYVGSDLEIGQHRAKIEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPNKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTEVVPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGEGQWTFQIYQEPFKNLKTGKYARARGAHTNDVKQLTEAVQKIATEGIVIWGKIPKFRLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKKGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIEKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQIIKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAATTTTCTCCAGAGCAGACCAGAGCCAACAGCCCCACCACCAGAAGAGATCTTCAGGTTTGTGGAAGAGACAACAACTCCCTCTCAGAAACAGGAGCCAATAGACAAGGAACTGTATCCTCCTTTAGCTTCCCTCAAATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAGGGGGGCAGCTAAAGGAAGCTCTATTAGATACAGGGGCAGATGATACAGTATTAGAAGACATGAATTTACCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACCCATAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGATTGGTTGCACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAGGACTTCTGGGAAGTTCAATTAGGAATACCACATCCCGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTATTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATAAAGACTTCAGGAAGTATACTGCATTTACCATACCTAGCATAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGTATGACAAAAATCTTAGAGCCTTATAGAACACGAAATCCAGAAATGGTTATCTATCAATACATGGATGATTTATATGTAGGATCTGACTTAGAAATAGGGCAACATAGAGCAAAAATAGAGGAACTGAGACAACATCTGTTGAAGTGGGGATTTACTACCCCAGACAAAAAACATCAAAAAGAACCTCCATTCCTTTGGATGGGGTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAAACAAAGACAGCTGGACTGTCAATGACATACAGAAACTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTACCCAGGGATTAAGGTAAAGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAAGTAGTACCGCTAACAGAAGAAGCAGAGTTAGAACTGGCAGAAAACAGGGAGATTCTAAAAGAACCAGTACATGGGGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAGCAGGGGGAAGGACAATGGACATTTCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAGCGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAGCCACAGAAGGCATAGTAATATGGGGAAAAATTCCTAAATTTAGACTACCCATACAAAAGGAAACATGGGAAACATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAACACCCCTCCCTTAGTAAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAACAGGGAAACTAAAAAAGGAAAAGCAGGATATGTTACTGACAGAGGAAGACAAAAAGTTGTCTCCCTAACTGATACAACAAATCAGAAGACTGAGTTACAAGCAATTCATCTAGCTTTGCAGGATTCAGGATTAGAAGTAAACATAGTAACAGACTCACAATACGCATTGGGAATCATTCAAGCACAACCAGATAAAAGTGAATCAGAGTTAGTCAGTCAAATAATAGAACAGTTGATAAAAAAGGAAAAGGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTTAGTGCTGGAATCAGGAAAGTATTATTTTTAGATGGAATAGAGAAGGCCCAAGATGAACATGAGAAATATCACAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAGTGTCAGCTAAAAGGAGAAGCCATACATGGACAGGTAGACTGTAGTCCAGGAATATGGCAATTAGATTGTACACATTTAGAAGGAAAAATTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTCATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTCTCTTAAAATTAGCAGGAAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTAATACGGTTAAGGCCGCCTGTTGGTGGGCGGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACAGACATCCAAACCAAAGAACTACAAAAACAAATTATAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTTATACAAGATAATAGTGACATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG +OQ092466,vif,5109,5688,5040,5619,forward,0.24677296886864086,MENRWQVMIVWQVDRMRIRTWNSLVKHHMYVSRKAKGWFYRHHFESNHPKISSEVHIPLEDARLVITTYWGLHTGERDWHLGQGVSIEWRKKRYSTQVDPDLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALAALITPKKRKPPLPSVKKLTEDRWNKPQKTKGHRGSHTMNGH,MENRWQVMIVWQVDRMRIRTWNSLVKHHMYVSRKAKGWFYRHHFESNHPKISSEVHIPLEDARLVITTYWGLHTGERDWHLGQGVSIEWRKKRYSTQVDPDLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALAALITPKKRKPPLPSVKKLTEDRWNKPQKTKGHRGSHTMNGH*,ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGTATGTTTCAAGGAAAGCTAAGGGATGGTTTTATAGACATCACTTTGAAAGCAATCATCCAAAAATAAGTTCAGAAGTACACATCCCACTGGAGGATGCTAGACTGGTAATAACAACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCATTTGGGTCAGGGGGTCTCCATAGAATGGAGGAAAAAGAGATATAGCACACAAGTAGACCCTGACCTAGCAGACCAACTAATTCATCTGTACTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACACATAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGATCTCTACAGTACTTGGCACTAGCAGCATTAATAACACCAAAAAAGAGAAAGCCACCCTTGCCTAGTGTTAAGAAGCTAACAGAAGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAG +OQ092466,vpr,5627,5921,5558,5850,forward,0.37080405932864813,MEQAPEDQGPQREPYNEWTLELLEELKSEAVRHFPRIWLHSLGQYIYETYGDTWAGVEAIIRILQQLLFIHFRIGCQHSRIGIIRQRRARNGASRS,MEQAPEDQGPQREPYNEWTLELLEELKSEAVRHFPRIWLHSLGQYIYETYGDTWAGVEAIIRILQQLLFIHFRIGCQHSRIGIIRQRRARNGASRS*A,ATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAGAGCTTTTAGAGGAGCTTAAGAGTGAAGCTGTTAGACATTTTCCTAGGATATGGCTCCATAGCTTAGGGCAATATATCTATGAAACTTATGGAGATACTTGGGCAGGGGTGGAAGCCATAATAAGAATTCTGCAACAACTGTTGTTTATTCATTTCAGAATTGGGTGTCAACATAGCAGAATAGGCATTATTCGACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGGCT +OQ092466,tat_exon1,5898,6114,5830,6045,forward,0.42503863987635226,MEPVDPRLEPWKHPGSQPRTACTTCYCKKCCFHCQVCFTTKGLGISYGRKKRRQRRRAPQDSQTDQGPLPKQ,MEPVDPRLEPWKHPGSQPRTACTTCYCKKCCFHCQVCFTTKGLGISYGRKKRRQRRRAPQDSQTDQGPLPKQ,ATGGAGCCAGTAGATCCTAGGCTAGAGCCCTGGAAGCATCCAGGAAGTCAGCCTAGGACTGCTTGTACCACTTGTTATTGTAAAAAATGCTGCTTTCATTGCCAAGTTTGTTTCACAACAAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGACGAGCTCCTCAAGACAGTCAGACTGATCAAGGTCCTCTACCAAAGCAG +OQ092466,rev_exon1,6037,6115,5969,6045,forward,0.48200514138817474,MAGRSGDSDDELLKTVRLIKVLYQSS,MAGRSGDSDDELLKTVRLIKVLYQSS,ATGGCAGGAAGAAGCGGAGACAGCGACGACGAGCTCCTCAAGACAGTCAGACTGATCAAGGTCCTCTACCAAAGCAGT +OQ092466,vpu,6129,6375,6061,6310,forward,0.49583498611662047,MQPLTILAIVALVVAAILAIVVWSIVLIEYRKILRQRKIDRLIDRIRERAEDSGNESEGDQEELSALVERGHLAPWNVDDL,MQPLTILAIVALVVAAILAIVVWSIVLIEYRKILRQRKIDRLIDRIRERAEDSGNESEGDQEELSALVERGHLAPWNVDDL*,ATGCAACCTTTAACAATATTAGCAATAGTAGCACTAGTAGTAGCAGCAATACTAGCAATAGTTGTGTGGTCCATAGTACTCATAGAATATAGGAAAATATTAAGACAAAGGAAAATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAAAGTGAGGGGGATCAGGAAGAATTATCAGCACTGGTGGAGAGGGGGCATCTTGCTCCTTGGAATGTTGATGATCTGTAA +OQ092466,env,6292,8902,6224,8795,forward,0.45879137688401217,MKVRGIRKNYQHWWRGGILLLGMLMICNATEQQLWVTVYYGVPVWKEANTTLFCASDAKAYSTEVHNVWATHACVPTDPNPQEVVLKNVTENFNMWENNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTNTTRSSGNTTNEMKNCSFYTETDIRDKKRKEYALFYELDIVPIDEDNKNKSNNISYSRLISCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEDEVVIKSSNFTNNAKTIIVQLNETVKINCTRPNNNTRKSIPIGPGRAFYATGDIIGDIRQAHCNISRANWTNTLKQIAEKLGKQFEENKTIVFNPSSGGDPEVVMHSFNCRGEFFYCNSTPLFNSTWKETNGIWTRIGESNDSATITLNDSDTITLQCKIRQIINLWQEVGKAMYAPPIKGQISCLSNITGLLLVRDGGNNTNGTEIFRPVGGEMRDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRATLGALFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICTTTVPWNTSWSNKSLEKIWNNMTWMEWEREIDNYTSLIYTLLEESQNQQEKNEKELLELDTWASLWNWFDITNWLWYIKIFIMIIGGLVGLRIVFTVLSIVNRVRQGYSPLSFQIHPPAPRGPDRPEGIEGEGGERDRDRSGPLVNGFLALFWVDLRSLCLFSYHRLRDLLLIVARIVELLGRRGWEALKYGWSLLQYWSQELKNSAVSLLNATAIAVAEGTDRVIEILQRACRAILHIPTRIRQGLERALL,MKVRGIRKNYQHWWRGGILLLGMLMICNATEQQLWVTVYYGVPVWKEANTTLFCASDAKAYSTEVHNVWATHACVPTDPNPQEVVLKNVTENFNMWENNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTNTTRSSGNTTNEMKNCSFYTETDIRDKKRKEYALFYELDIVPIDEDNKNKSNNISYSRLISCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEDEVVIKSSNFTNNAKTIIVQLNETVKINCTRPNNNTRKSIPIGPGRAFYATGDIIGDIRQAHCNISRANWTNTLKQIAEKLGKQFEENKTIVFNPSSGGDPEVVMHSFNCRGEFFYCNSTPLFNSTWKETNGIWTRIGESNDSATITLNDSDTITLQCKIRQIINLWQEVGKAMYAPPIKGQISCLSNITGLLLVRDGGNNTNGTEIFRPVGGEMRDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRATLGALFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICTTTVPWNTSWSNKSLEKIWNNMTWMEWEREIDNYTSLIYTLLEESQNQQEKNEKELLELDTWASLWNWFDITNWLWYIKIFIMIIGGLVGLRIVFTVLSIVNRVRQGYSPLSFQIHPPAPRGPDRPEGIEGEGGERDRDRSGPLVNGFLALFWVDLRSLCLFSYHRLRDLLLIVARIVELLGRRGWEALKYGWSLLQYWSQELKNSAVSLLNATAIAVAEGTDRVIEILQRACRAILHIPTRIRQGLERALL*DGWQMVKK*,ATGAAAGTGAGGGGGATCAGGAAGAATTATCAGCACTGGTGGAGAGGGGGCATCTTGCTCCTTGGAATGTTGATGATCTGTAATGCTACAGAACAACAATTGTGGGTTACAGTCTATTATGGGGTACCTGTGTGGAAAGAAGCAAACACCACTCTATTTTGTGCATCAGATGCTAAAGCATATAGTACAGAGGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTGGTATTAAAAAATGTGACAGAAAATTTTAATATGTGGGAAAATAACATGGTAGAACAGATGCATGAAGATATAATCAGTTTATGGGATCAAAGCTTAAAGCCATGTGTAAAGTTAACTCCACTCTGTGTTACTCTAAATTGCACTAATACCACTAGGAGTAGTGGAAATACTACCAATGAAATGAAAAACTGCTCTTTCTATACCGAAACAGACATAAGAGATAAGAAGAGAAAGGAATATGCACTTTTTTATGAACTTGATATAGTACCCATAGATGAGGATAATAAGAATAAGAGTAATAATATTAGCTATTCTAGGTTAATAAGTTGCAACACCTCAGTTATTACACAAGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAATGATAAGAAATTCAATGGAACAGGGCCATGTACAAATGTCAGCACAGTGCAATGTACACATGGTATTAGGCCAGTAGTATCAACTCAACTGCTGTTAAATGGCAGTCTAGCAGAAGACGAGGTAGTAATTAAATCTAGCAATTTCACGAACAATGCTAAAACCATAATAGTACAGCTAAATGAAACTGTAAAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATACCTATAGGACCAGGGAGAGCATTTTATGCAACAGGAGACATAATAGGAGACATAAGACAAGCACATTGTAACATCTCTAGAGCAAACTGGACAAACACTTTAAAACAGATAGCTGAAAAATTAGGAAAACAATTTGAGGAAAATAAAACAATAGTCTTTAATCCCTCCTCAGGAGGGGACCCAGAGGTTGTAATGCACAGTTTTAATTGTAGAGGGGAATTTTTCTACTGTAATTCAACACCACTGTTTAATAGTACTTGGAAGGAGACTAATGGGATTTGGACTCGTATTGGAGAGTCAAATGATAGTGCTACTATCACACTAAATGATAGTGATACTATCACACTCCAATGTAAAATAAGGCAAATTATAAACTTGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCATCAAAGGACAAATTAGCTGTTTATCAAACATTACAGGGCTGCTATTAGTAAGAGATGGTGGCAATAACACGAACGGGACCGAGATCTTCAGACCTGTAGGAGGAGAAATGAGGGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAAAATTGAACCATTAGGAGTAGCACCCACCAGGGCAAAGAGAAGAGTGGTGCAGAGAGAGAAAAGAGCGACATTGGGAGCTCTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAGGCCAGACTATTATTGTCTGGTATAGTGCAACAGCAGAACAATTTGCTGAGAGCTATTGAGGCGCAACAGCATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTAAGGGATCAACAGCTCCTGGGGATTTGGGGTTGCTCTGGAAAACTCATCTGCACCACTACTGTGCCTTGGAATACTAGTTGGAGTAATAAATCTCTGGAAAAAATTTGGAATAATATGACCTGGATGGAGTGGGAAAGAGAAATTGACAATTACACAAGCTTAATATACACCTTACTTGAAGAATCGCAGAACCAGCAAGAAAAAAATGAAAAAGAATTATTGGAATTAGATACATGGGCAAGTTTGTGGAATTGGTTTGACATAACAAACTGGCTGTGGTATATAAAAATATTCATAATGATAATAGGAGGCTTGGTAGGTTTAAGAATAGTTTTTACTGTACTTTCTATAGTGAATAGAGTTAGGCAGGGATACTCACCATTATCGTTCCAGATCCACCCCCCAGCTCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGGAGAAGGTGGAGAGAGAGACAGAGACAGATCCGGTCCATTAGTGAACGGATTCTTAGCACTTTTCTGGGTCGACCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAGCGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCTCTCAAATACGGGTGGAGTCTCCTACAATATTGGAGCCAGGAACTAAAGAATAGTGCTGTCAGCTTGCTCAACGCCACAGCCATAGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAATATTACAAAGAGCTTGTAGAGCTATTCTCCATATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCTTTGCTATAAGATGGGTGGCAAATGGTCAAAAAGTAA +OQ092466,tat_exon2,8456,8552,8376,8469,forward,0.5884955752212387,RSTPQLRGDPTGPKESKEKVERETETDPVH,RSTPQLRGDPTGPKESKEKVERETETDPVH**,AGATCCACCCCCCAGCTCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGGAGAAGGTGGAGAGAGAGACAGAGACAGATCCGGTCCATTAGTGA +OQ092466,rev_exon2,8457,8733,8377,8653,forward,0.3690449563855961,DPPPSSEGTRQARRNRRRRWRERQRQIRSISERILSTFLGRPAEPVPLQLPPLERLTLDCSEDCGTSGTQGVGSSQIRVESPTILEPGTKE,DPPPSSEGTRQARRNRRRRWRERQRQIRSISERILSTFLGRPAEPVPLQLPPLERLTLDCSEDCGTSGTQGVGSSQIRVESPTILEPGTKE*,GATCCACCCCCCAGCTCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGGAGAAGGTGGAGAGAGAGACAGAGACAGATCCGGTCCATTAGTGAACGGATTCTTAGCACTTTTCTGGGTCGACCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAGCGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCTCTCAAATACGGGTGGAGTCTCCTACAATATTGGAGCCAGGAACTAAAGAATAG +OQ092466,nef,8876,9509,8796,9417,forward,0.4484304932735389,MGGKWSKSKLFGWPAVRERMRRAEPAAEPAADGVGAASRDLERHGAITSSNTPTTNAACAWLEAQEEEEVGFPVRPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIHSPKRQEILDLWVYHTQGFFPDWDNYTPGPGIRYPLTFGWCFKLVPVEPDKVEEANEGENNCLLHPMSQHGMEDPEREVLEWRFDSRLAFRHVARELHPEYYKDC,MGGKWSKSKLFGWPAVRERMRRAEPAAEPAADGVGAASRDLERHGAITSSNTPTTNAACAWLEAQEEEEVGFPVRPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIHSPKRQEILDLWVYHTQGFFPDWDNYTPGPGIRYPLTFGWCFKLVPVEPDKVEEANEGENNCLLHPMSQHGMEDPEREVLEWRFDSRLAFRHVARELHPEYYKDC*,ATGGGTGGCAAATGGTCAAAAAGTAAGCTATTTGGATGGCCTGCTGTAAGGGAAAGAATGAGAAGAGCTGAGCCAGCAGCAGAGCCAGCAGCAGATGGGGTGGGAGCAGCATCTCGAGACCTGGAAAGACACGGAGCAATCACAAGTAGCAATACACCAACTACCAATGCTGCTTGTGCCTGGCTAGAAGCACAAGAAGAGGAGGAGGTGGGTTTTCCAGTCAGACCTCAGGTACCTTTAAGACCAATGACTTACAAAGCGGCTGTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCACTCCCCAAAAAGACAAGAGATCCTTGATCTGTGGGTCTATCATACACAAGGTTTCTTCCCTGATTGGGATAACTACACACCAGGGCCAGGGATCAGATATCCACTGACCTTTGGATGGTGCTTCAAGTTAGTACCAGTGGAGCCAGATAAGGTAGAAGAGGCCAATGAAGGAGAGAATAACTGCTTGTTACACCCTATGAGCCAGCATGGGATGGAGGACCCGGAGAGAGAAGTGTTAGAGTGGAGGTTTGACAGCCGCCTGGCATTTCGTCACGTGGCCCGAGAGCTGCATCCGGAGTACTACAAGGACTGCTGA +OQ092463,gag,801,2313,140,1643,forward,0.24610894941634254,MGARASVLSGGELDRWERIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSKGCRQILEQLQPSLQTGSEELKSLYNTVATLYCVHQKIDVKDTKEALDKIEEEQNKSKKKTQQAAADTGNNSQTSQASQNYPIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKESFRDYVDRFYKTLRAEQCTQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTTPGTIMMQRGNFRNQRKNVKCFNCGKEGHIAKNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETTTPSQKQEPVDKELYPLASLRSLFGNDPSSQ,MGARASVLSGGELDRWERIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSKGCRQILEQLQPSLQTGSEELKSLYNTVATLYCVHQKIDVKDTKEALDKIEEEQNKSKKKTQQAAADTGNNSQTSQASQNYPIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKESFRDYVDRFYKTLRAEQCTQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTTPGTIMMQRGNFRNQRKNVKCFNCGKEGHIAKNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETTTPSQKQEPVDKELYPLASLRSLFGNDPSSQ*,ATGGGTGCGAGAGCGTCGGTATTAAGCGGGGGAGAATTAGATAGATGGGAAAGAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAAATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAGCGGTTCGCAGTTAATCCTGGCCTGTTAGAAACATCAAAAGGCTGTAGACAAATATTGGAACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATATAATACAGTAGCAACCCTCTATTGTGTGCATCAAAAGATAGATGTAAAAGACACCAAGGAAGCTTTAGATAAGATAGAGGAAGAGCAAAACAAAAGTAAGAAAAAAACACAGCAAGCAGCAGCTGACACAGGAAACAACAGCCAGACCAGCCAGGCCAGCCAAAATTACCCTATAGTGCAGAACATCCAGGGGCAAATGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGGATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCCTGGGACTAAATAAAATAGTAAGGATGTATAGCCCTACCAGCATTCTGGACATAAGACAAGGACCAAAGGAATCCTTTAGAGACTATGTAGACCGGTTCTATAAAACTCTAAGAGCCGAACAATGTACACAGGAGGTAAAAAATTGGATGACAGAAACATTATTGGTCCAAAATGCAAACCCAGATTGCAAGACTATTTTAAAAGCATTAGGACCAGCAGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCTGGCCATAAAGCAAGAGTTTTGGCAGAAGCAATGAGCCAAGTAACAACTCCAGGTACCATAATGATGCAGAGAGGCAATTTCAGGAACCAGAGAAAGAATGTTAAGTGTTTCAACTGTGGCAAAGAAGGGCATATAGCTAAAAATTGCAGGGCCCCTAGAAAAAGGGGCTGTTGGAAATGTGGAAAAGAAGGACACCAAATGAAAGATTGCACTGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGGAGGCCAGGGAATTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAGGAGACAACAACTCCCTCTCAGAAGCAGGAGCCGGTAGACAAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAA +OQ092463,pol,2105,5117,1435,4447,forward,0.14797358397500882,FFRENLAFPQGEAREFSSEQTRANSPTRRELQVWGGDNNSLSEAGAGRQGTVSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMTLPGRWKPKMIGGIGGFIKVRQYDQILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIDELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTEVVPLTREAELELAENREILKEPVHGVYYDPTKDLIAELQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQRETWDTWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKDKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIDKAQDDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGSNFISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVYIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED,FFRENLAFPQGEAREFSSEQTRANSPTRRELQVWGGDNNSLSEAGAGRQGTVSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMTLPGRWKPKMIGGIGGFIKVRQYDQILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIDELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTEVVPLTREAELELAENREILKEPVHGVYYDPTKDLIAELQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQRETWDTWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKDKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIDKAQDDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGSNFISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVYIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGGAGGCCAGGGAATTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAGGAGACAACAACTCCCTCTCAGAAGCAGGAGCCGGTAGACAAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGACATGACTTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACTTGTAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTAACTCAAATTGGTTGCACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATCTGTACAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATATAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCCGCAGGGTTAAAAAAGAAAAAGTCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATAAAGACTTCAGGAAGTATACTGCATTTACCATACCTAGTATAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGACATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGATGAATTAAGACAACATCTGTTGAAGTGGGGATTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGATATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGTTGCCAGAAAAGGACAGTTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTGAATTGGGCAAGTCAGATTTACCCAGGGATTAAAGTAAAGCAATTATGTAAACTCCTTAGGGGAACCAAGGCACTAACAGAAGTAGTACCACTAACAAGAGAAGCAGAGCTAGAGCTGGCAGAAAACAGGGAAATTCTAAAAGAACCAGTACATGGAGTGTATTATGACCCAACAAAAGACTTAATAGCAGAGTTACAGAAGCAGGGGCAAGGCCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGGAAATATGCAAGAATGAGAGGTGCCCACACTAATGATGTAAAGCAACTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAGTTTAAACTACCCATACAAAGAGAAACATGGGACACATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAATTTGTCAATACCCCTCCCTTAGTAAAATTATGGTACCAGTTAGAGAAAGAACCTATAGTAGGAGCAGAAACTTTCTATGTAGATGGTGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAACAGAGGAAGACAAAAAGTTGTCTCCCTAACTGATACAACAAATCAGAAGACTGAGTTACAAGCAATTCATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATAAAAGTGAATCAGAGTTAGTTAATCAAATAATAGAACAGTTAATAAAAAAGGACAAGGTATACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTGCTGGAATCAGGAAAGTACTATTTTTAGATGGAATAGATAAGGCCCAAGATGACCATGAGAAATATCACAGTAATTGGAGGGCAATGGCTAGTGATTTTAACCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGCCAGTTAAAAGGGGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAACTGGATTGTACACACTTAGAAGGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGGTATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTATCTTAAAATTAGCAGGAAGATGGCCAGTAACAACAATACATACAGACAATGGCAGCAATTTCATCAGTACTACAGTTAAGGCCGCCTGCTGGTGGGCGGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATCATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATACATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATTACAAAACTTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGACATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG +OQ092463,vif,5061,5640,4391,4970,forward,0.32379004771642805,MENRWQVMIVWQVDRMRIRTWKSLVKHHMYISRKAKGWVYKHHYDSIHPRISSEVHIPLGDAKLVITTYWGLHTGERDWHLGQGVSIEWRKERYSTQVDPGLADQLIHRYYFDCFSESAIRNAILGRIVSPSCDYQAGHNKVGSLQYLALAALITPKKIKPPLPSVKKLTEDRWNKPQKTKGHRGSHTMNGH,MENRWQVMIVWQVDRMRIRTWKSLVKHHMYISRKAKGWVYKHHYDSIHPRISSEVHIPLGDAKLVITTYWGLHTGERDWHLGQGVSIEWRKERYSTQVDPGLADQLIHRYYFDCFSESAIRNAILGRIVSPSCDYQAGHNKVGSLQYLALAALITPKKIKPPLPSVKKLTEDRWNKPQKTKGHRGSHTMNGH*,ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGGACATGGAAAAGTTTAGTAAAACACCATATGTATATTTCAAGGAAAGCTAAGGGATGGGTTTATAAGCATCACTATGACAGTATTCATCCAAGAATAAGTTCAGAAGTTCACATCCCACTAGGGGATGCGAAATTGGTAATAACAACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCACTTGGGTCAGGGAGTCTCCATAGAATGGAGAAAGGAGAGATATAGCACACAAGTAGACCCTGGCCTAGCAGACCAACTAATTCATCGGTATTACTTTGATTGTTTTTCAGAATCTGCCATAAGAAATGCCATATTAGGACGTATAGTTAGTCCTAGTTGTGATTATCAAGCAGGACATAACAAGGTAGGATCTCTACAGTACTTGGCACTAGCAGCATTAATAACACCAAAAAAGATAAAGCCACCTTTGCCTAGTGTTAAGAAACTGACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACACTAG +OQ092463,vpr,5579,5870,4909,5200,forward,0.32760957975598726,MEQAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHSLGQHIYETYGDTWAGVEAITRILQQLLFIHFRIGCQHSRIGIIQRRRARNGTSRS,MEQAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHSLGQHIYETYGDTWAGVEAITRILQQLLFIHFRIGCQHSRIGIIQRRRARNGTSRS*,ATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACACTAGAGCTTTTAGAGGAGCTTAAGAATGAAGCTGTTAGACACTTCCCTAGGCCATGGCTCCACAGCTTAGGGCAACATATCTATGAAACATATGGAGATACTTGGGCAGGAGTGGAAGCCATAACAAGAATTCTGCAACAACTGCTGTTTATTCATTTCAGAATTGGGTGTCAACATAGCAGAATAGGCATCATTCAACGGAGGAGAGCAAGAAATGGAACCAGTAGATCCTAG +OQ092463,tat_exon1,5850,6066,5180,5395,forward,0.3854625550660793,MEPVDPRLEPWKHPGSQPRTACTSCYCKQCCFHCQVCFITKGLGISYGRKKRRQRRRAHQDSQTHQASLSKQ,MEPVDPRLEPWKHPGSQPRTACTSCYCKQCCFHCQVCFITKGLGISYGRKKRRQRRRAHQDSQTHQASLSKQ,ATGGAACCAGTAGATCCTAGATTAGAGCCCTGGAAGCATCCAGGAAGTCAGCCTAGGACTGCTTGTACCTCTTGTTATTGTAAGCAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAACAAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCATCAAGACAGTCAGACTCATCAAGCTTCTCTATCAAAGCAG +OQ092463,rev_exon1,5989,6067,5319,5395,forward,0.35828025477707015,MAGRSGDSDEELIKTVRLIKLLYQSS,MAGRSGDSDEELIKTVRLIKLLYQSS,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCATCAAGACAGTCAGACTCATCAAGCTTCTCTATCAAAGCAGT +OQ092463,vpu,6081,6330,5411,5657,forward,0.42056074766355134,MQPLEISAIVALVVAIIIAIVVWSIVLIEYRKILRQRKIDRIIDRIRERAEDSGNESEGDQEELSALVVEMGHDAPWDVNDL,MQPLEISAIVALVVAIIIAIVVWSIVLIEYRKILRQRKIDRIIDRIRERAEDSGNESEGDQEELSALVVEMGHDAPWDVNDL*,ATGCAACCTTTAGAAATATCAGCAATAGTAGCATTAGTAGTAGCAATAATAATAGCAATAGTTGTGTGGTCCATAGTACTCATAGAATATAGGAAAATATTAAGACAAAGAAAAATAGACAGGATAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGCGAGGGGGATCAGGAAGAATTATCAGCACTTGTTGTGGAGATGGGGCACGATGCTCCTTGGGATGTTAATGATCTGTAG +OQ092463,env,6244,8827,5574,8124,forward,0.41803024942508427,MRARGIRKNYQHLLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEATTTLFYASDAKAYGTEVHNVWATHACVPTDPNPQEVVLGNVTENFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTNYNNTNTTSTKNTTPSTTASSGERMGEGEIKNCSFNITTSLRDKMQKEYALFYRPDIVPIDNDNTSYRLISCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNNKKFNGSGPCTNVSTIQCTHGIRPVVSTQLLLNGSLAEEEIVIRSENFSDNAKTIIVHLKDSVEITCIRPNNNTRKSIPMGPGKAFFATGAIIGDIRQAHCKINKTKWNNTLDQIFKKLREQFGNNKTIIFNHSSGGDPEIVTHNFNCGGEFFYCNTSKLFNSTWNETSSWKDESNGTITLPCRIKQIINLWQEVGKAMYAPPIRGLIKCSSNITGLLITRDGGKNNESNTTEIFRPEGGNMKDNWRSELYKYKVVKIEPLGIAPTKAKRRVVQREKRAVGIGAMFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKTLEQIWDNMTWMQWEREIDNYTSLIYTLIEESQNQQEKNELELLELDKWASLWNWFDITKWLWYIKIFIMIVGGLVGLRIVFAVLSIANRVRQGYSPLSFQTHPPAPRGPDRPEGIGEEGGERDRDRSGPLVNGFLAIIWVDLRSLCLFSYHRLRDLLLIVTRIVELLGRGGWELLKYWWNLLQYWSQELKNSAISLLNATAIAVAEGTDRIIEVLQRAGRAFLNIPRRIRQGLERALL,MRARGIRKNYQHLLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEATTTLFYASDAKAYGTEVHNVWATHACVPTDPNPQEVVLGNVTENFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTNYNNTNTTSTKNTTPSTTASSGERMGEGEIKNCSFNITTSLRDKMQKEYALFYRPDIVPIDNDNTSYRLISCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNNKKFNGSGPCTNVSTIQCTHGIRPVVSTQLLLNGSLAEEEIVIRSENFSDNAKTIIVHLKDSVEITCIRPNNNTRKSIPMGPGKAFFATGAIIGDIRQAHCKINKTKWNNTLDQIFKKLREQFGNNKTIIFNHSSGGDPEIVTHNFNCGGEFFYCNTSKLFNSTWNETSSWKDESNGTITLPCRIKQIINLWQEVGKAMYAPPIRGLIKCSSNITGLLITRDGGKNNESNTTEIFRPEGGNMKDNWRSELYKYKVVKIEPLGIAPTKAKRRVVQREKRAVGIGAMFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKTLEQIWDNMTWMQWEREIDNYTSLIYTLIEESQNQQEKNELELLELDKWASLWNWFDITKWLWYIKIFIMIVGGLVGLRIVFAVLSIANRVRQGYSPLSFQTHPPAPRGPDRPEGIGEEGGERDRDRSGPLVNGFLAIIWVDLRSLCLFSYHRLRDLLLIVTRIVELLGRGGWELLKYWWNLLQYWSQELKNSAISLLNATAIAVAEGTDRIIEVLQRAGRAFLNIPRRIRQGLERALL*,ATGAGAGCGAGGGGGATCAGGAAGAATTATCAGCACTTGTTGTGGAGATGGGGCACGATGCTCCTTGGGATGTTAATGATCTGTAGTGCTACAGAAAAATTGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAAAGAAGCAACTACCACTCTATTTTATGCATCAGATGCTAAAGCATATGGTACAGAGGTACATAATGTTTGGGCTACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGTATTGGGAAATGTGACAGAGAATTTTAACATGTGGAAAAATGACATGGTAGAACAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTGAATTGCACTAATTATAATAACACCAATACCACTAGTACCAAGAATACCACCCCTAGTACCACTGCTAGTAGCGGGGAAAGGATGGGGGAAGGAGAAATAAAAAACTGCTCTTTCAATATCACCACAAGCCTAAGAGATAAGATGCAGAAAGAATATGCACTCTTTTATAGACCTGATATAGTACCAATAGATAATGATAATACTAGTTATAGGTTGATAAGTTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTATTGTGCCCCAGCTGGTTTTGCGATTCTAAAGTGTAACAATAAGAAGTTCAATGGATCAGGACCATGTACAAATGTCAGCACAATACAATGTACACATGGAATTAGGCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTCTAGCAGAAGAAGAGATAGTAATTAGATCTGAAAATTTCTCAGACAATGCTAAAACCATAATAGTACATCTGAAGGATTCTGTAGAAATTACTTGTATAAGACCCAACAACAATACAAGAAAAAGTATACCTATGGGACCAGGGAAAGCATTTTTTGCAACAGGAGCCATAATAGGAGATATAAGACAAGCACATTGTAAAATTAATAAAACGAAATGGAATAACACTTTAGACCAGATATTTAAAAAGTTAAGAGAACAATTTGGGAATAATAAGACAATAATCTTTAATCACTCCTCAGGAGGGGACCCAGAAATTGTAACGCACAATTTTAATTGTGGAGGGGAATTTTTCTACTGTAATACATCAAAACTGTTTAATAGTACTTGGAATGAGACTAGTTCTTGGAAGGATGAGTCAAATGGCACTATCACACTCCCATGCAGAATAAAGCAAATTATAAACCTGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCATTAGAGGACTCATTAAATGTTCATCAAATATCACAGGGCTGCTAATAACAAGAGATGGTGGGAAAAATAATGAGAGCAACACCACCGAGATTTTCAGACCTGAAGGAGGAAATATGAAGGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAAAATTGAACCATTAGGAATAGCACCCACCAAGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTATGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAATAACGCTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAACAGCAGAACAATTTGCTGAGGGCTATTGAGGCGCAACAGCATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTAAAGGATCAACAGCTCCTGGGAATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCTTGGAATGCTAGTTGGAGTAATAAAACTCTGGAACAGATTTGGGATAACATGACCTGGATGCAATGGGAAAGAGAAATTGACAATTACACAAGCTTGATATACACTTTAATTGAAGAATCGCAAAACCAACAAGAAAAGAATGAACTAGAATTATTGGAATTAGATAAATGGGCAAGTTTGTGGAATTGGTTTGACATAACAAAGTGGCTGTGGTATATAAAAATATTCATAATGATAGTAGGAGGCTTGGTAGGTTTAAGAATAGTTTTTGCTGTGCTTTCTATAGCGAATAGAGTTAGGCAGGGATACTCACCATTATCGTTTCAGACCCACCCCCCAGCCCCGAGGGGACCCGACAGGCCAGAAGGAATCGGAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGGACCATTAGTGAACGGATTCTTAGCAATTATCTGGGTCGACCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAACGAGGATTGTGGAACTTCTGGGACGCGGGGGGTGGGAACTCCTCAAGTATTGGTGGAATCTCCTGCAGTATTGGAGTCAGGAACTAAAGAATAGTGCTATTAGCTTGCTTAATGCTACAGCCATAGCAGTAGCTGAGGGGACAGACAGGATTATAGAAGTATTACAAAGAGCTGGGAGAGCTTTTCTCAACATACCTAGAAGAATAAGACAGGGCTTGGAAAGGGCTTTGCTATAA +OQ092463,tat_exon2,8408,8504,7705,7798,forward,0.4918032786885247,RPTPQPRGDPTGQKESEKKVERETETDPDH,RPTPQPRGDPTGQKESEKKVERETETDPDH**,AGACCCACCCCCCAGCCCCGAGGGGACCCGACAGGCCAGAAGGAATCGGAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGGACCATTAGTGA +OQ092463,rev_exon2,8409,8685,7706,7982,forward,0.3471418653089562,DPPPSPEGTRQARRNRRRRWRERQRQIRTISERILSNYLGRPAEPVPLQLPPLERLTLDCNEDCGTSGTRGVGTPQVLVESPAVLESGTKE,DPPPSPEGTRQARRNRRRRWRERQRQIRTISERILSNYLGRPAEPVPLQLPPLERLTLDCNEDCGTSGTRGVGTPQVLVESPAVLESGTKE*,GACCCACCCCCCAGCCCCGAGGGGACCCGACAGGCCAGAAGGAATCGGAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGGACCATTAGTGAACGGATTCTTAGCAATTATCTGGGTCGACCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAACGAGGATTGTGGAACTTCTGGGACGCGGGGGGTGGGAACTCCTCAAGTATTGGTGGAATCTCCTGCAGTATTGGAGTCAGGAACTAAAGAATAG +OQ092463,nef,8828,9461,8125,8752,forward,0.32004639881893915,MGGKWSKSSVVGWPAIRERMRRAEPAAEPAADGVGAASRDLEKHGAITSSNTAATNADCAWLEAQEEEEVGFPVRPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIYSQKRQDILDLWVYHTQGYFPDWQNYTPGPGIRYPLTFGWCFKLVPVEPDKVEEANEGENNSLLHPMSLHGMDDPEKEVLVWRFDSRLAFHHMARELHPEYYKDC,MGGKWSKSSVVGWPAIRERMRRAEPAAEPAADGVGAASRDLEKHGAITSSNTAATNADCAWLEAQEEEEVGFPVRPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIYSQKRQDILDLWVYHTQGYFPDWQNYTPGPGIRYPLTFGWCFKLVPVEPDKVEEANEGENNSLLHPMSLHGMDDPEKEVLVWRFDSRLAFHHMARELHPEYYKDC*,ATGGGTGGTAAGTGGTCAAAAAGTAGTGTGGTTGGATGGCCTGCTATAAGGGAAAGAATGAGACGAGCTGAGCCAGCAGCAGAGCCAGCAGCAGATGGGGTGGGAGCAGCATCTAGAGACCTGGAAAAACATGGAGCAATCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGTGCCTGGCTAGAAGCACAAGAGGAGGAGGAGGTGGGTTTTCCAGTCAGGCCTCAGGTACCTTTAAGACCAATGACTTATAAGGCAGCTGTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGTTAATTTACTCCCAGAAAAGACAAGATATCCTTGATCTGTGGGTCTACCACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGATAAGATATCCACTGACCTTTGGATGGTGCTTCAAGCTAGTGCCAGTTGAGCCAGATAAGGTAGAAGAGGCCAATGAAGGAGAGAACAACAGCTTGTTACACCCTATGAGCCTGCATGGGATGGATGACCCAGAGAAAGAAGTGTTAGTATGGAGATTTGACAGTCGCCTGGCATTTCATCACATGGCCCGAGAGCTGCATCCGGAGTACTACAAGGATTGCTGA +OQ092465,gag,855,2364,200,1700,forward,0.3761259433579487,MGARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSKGCRQILEQLQPSLQTGSEELKSLYNTVATLYCVHQQIDVKDTKEALDKIEEEQNKSKKKVQQAATDTGNNSQASQNYPIVQNLQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKESFRDYVDRFYKTLRAEQCTQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTTPGAIMMQRGNFRSQRKTVKCFNCGKEGHIAKNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPAESFRFGEETTTPSQKQEPIDKELYPLASLRSLFGNDPSSQ,MGARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSKGCRQILEQLQPSLQTGSEELKSLYNTVATLYCVHQQIDVKDTKEALDKIEEEQNKSKKKVQQAATDTGNNSQASQNYPIVQNLQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKESFRDYVDRFYKTLRAEQCTQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTTPGAIMMQRGNFRSQRKTVKCFNCGKEGHIAKNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPAESFRFGEETTTPSQKQEPIDKELYPLASLRSLFGNDPSSQ*R*,ATGGGTGCGAGAGCGTCGGTATTAAGCGGGGGAGAATTAGATAGGTGGGAAAAAATTCGGTTAAGGCCAGGAGGAAAGAAAAAATATAAATTAAAACATATAGTATGGGCAAGCAGGGAACTAGAACGGTTTGCAGTTAATCCTGGCCTGTTAGAAACATCAAAAGGCTGTAGACAAATATTGGAACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATATAATACAGTAGCAACCCTCTATTGTGTGCATCAACAGATAGATGTAAAAGACACCAAGGAAGCTTTAGATAAGATAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGTACAGCAAGCAGCAACTGACACAGGAAACAACAGCCAGGCCAGCCAAAATTACCCTATAGTGCAGAATCTCCAGGGGCAAATGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGACTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGGATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGGATGTATAGTCCTACCAGCATTCTGGACATAAGACAAGGACCAAAGGAATCCTTTAGAGACTATGTAGACCGGTTCTATAAAACTCTAAGAGCCGAACAATGTACACAGGAGGTAAAAAATTGGATGACAGAAACATTATTGGTCCAAAATGCAAACCCAGACTGCAAGACTATTTTAAAAGCATTAGGACCAGCAGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCTGGCCATAAAGCAAGAGTTTTGGCAGAAGCAATGAGCCAAGTAACAACTCCAGGTGCCATAATGATGCAGAGAGGCAATTTCAGGAGCCAAAGAAAGACTGTTAAGTGTTTCAACTGTGGCAAAGAAGGGCATATAGCTAAAAATTGCAGGGCCCCTAGAAAAAGGGGCTGTTGGAAATGTGGAAAAGAAGGACACCAAATGAAAGATTGCACTGAGAGACAGGCTAATTTTTTAGGGAAGATCTGGCCTTCCCACAAGGGGAGGCCAGGGAATTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGCAGAGAGCTTCAGGTTCGGGGAGGAGACAACAACTCCCTCTCAGAAGCAGGAGCCGATAGACAAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAG +OQ092465,pol,2150,5162,1492,4504,forward,0.21863141758600757,FFREDLAFPQGEAREFSSEQTRANSPTSRELQVRGGDNNSLSEAGADRQGTVSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMTLPGRWKPKMIGGIGGFIKVRQYDQILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIDELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCRLLKGTKALTEVVPLTREAELELAENREILKEPVHGVYYDPTKDLIAELQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQRETWDTWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKDKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIDKAQDDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGGNFISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVYIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED,FFREDLAFPQGEAREFSSEQTRANSPTSRELQVRGGDNNSLSEAGADRQGTVSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMTLPGRWKPKMIGGIGGFIKVRQYDQILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIDELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCRLLKGTKALTEVVPLTREAELELAENREILKEPVHGVYYDPTKDLIAELQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQRETWDTWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKDKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIDKAQDDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGGNFISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVYIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAGATCTGGCCTTCCCACAAGGGGAGGCCAGGGAATTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGCAGAGAGCTTCAGGTTCGGGGAGGAGACAACAACTCCCTCTCAGAAGCAGGAGCCGATAGACAAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAGGGGGGCAACTAAAGGAAGCTCTATTAGACACAGGAGCAGATGATACAGTATTAGAAGACATGACTTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACTTGTAGAAATCTGTGGACATAAAGCTATAGGTACAGTTTTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAAATTGGTTGCACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATCTGTACAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATATAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCCGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATAAAGACTTCAGGAAGTATACTGCATTTACCATACCTAGTATAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGACATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGATGAATTAAGACAACATCTGTTGAAGTGGGGATTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGGTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGTTGCCAGAAAAAGACAGTTGGACTGTTAATGACATACAGAAGTTAGTGGGAAAATTGAATTGGGCAAGTCAGATTTACCCAGGGATTAAGGTAAAGCAATTATGTAGACTCCTTAAGGGAACCAAGGCACTAACAGAAGTAGTACCACTAACAAGAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTCTAAAAGAACCAGTACATGGAGTGTATTATGACCCAACAAAAGACTTAATAGCAGAGTTACAGAAGCAGGGACAAGGCCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGAGGTGCCCACACTAATGATGTAAAACAGCTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAGTTTAAACTACCCATACAAAGAGAAACATGGGACACATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTTTATGTAGATGGTGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAATAGAGGAAGACAAAAAGTTGTCTCCCTAACTGACACCACAAATCAGAAGACTGAGTTACAAGCAATTCATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATCCAAGCACAACCAGATAAAAGTGAATCAGAGTTAGTTAATCAAATAATAGAACAGTTAATAAAAAAGGACAAAGTATACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTGCTGGAATCAGGAAAGTACTATTTTTAGATGGAATAGATAAGGCCCAAGATGATCATGAGAAATATCACAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGCCAGTTAAAAGGGGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAACTGGATTGTACACACTTAGAAGGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTATCTTAAAATTAGCAGGAAGATGGCCAGTAAAAACAATACATACAGACAATGGTGGCAATTTCATCAGTACTACAGTTAAGGCCGCCTGTTGGTGGGCGGGGATCAAGCAGGAATTTGGCATACCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATCATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATACATACACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATTACAAAACTTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGACATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG +OQ092465,vif,5106,5685,4448,5027,forward,0.3531840904151272,MENRWQVMIVWQVDRMRIRTWKSLVKHHMYISKKAKGWIYKHHYDSINPKISSEVHIPLGDAKLVITTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPGLADRLIHLYYFDCFSESAIRNAILGRIVSPSCDYQAGHNKVGSLQYLALTALITPKKIKPPLPSVKKLTEDRWNKPQKTKGHRGSHTMNGH,MENRWQVMIVWQVDRMRIRTWKSLVKHHMYISKKAKGWIYKHHYDSINPKISSEVHIPLGDAKLVITTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPGLADRLIHLYYFDCFSESAIRNAILGRIVSPSCDYQAGHNKVGSLQYLALTALITPKKIKPPLPSVKKLTEDRWNKPQKTKGHRGSHTMNGH*,ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGGACATGGAAAAGTTTAGTAAAACACCATATGTATATTTCAAAGAAAGCTAAGGGATGGATTTATAAGCATCACTATGACAGTATTAATCCAAAAATAAGTTCAGAAGTTCACATCCCACTAGGGGATGCAAAATTGGTAATAACAACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGGAAAAGGAGATATAGCACACAAGTAGACCCTGGCCTAGCAGACCGACTAATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACGTATAGTTAGTCCTAGTTGTGATTATCAAGCAGGACATAACAAGGTAGGGTCTCTACAGTACTTGGCACTAACAGCACTAATAACACCAAAAAAGATAAAGCCACCTTTGCCTAGTGTTAAGAAACTGACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACACTAG +OQ092465,vpr,5624,5915,4966,5257,forward,0.22216414009409302,MEQAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHSLGQHIYETYGDTWAGVEAIIRILQQLLFIHFRIGCQHSRIGILQRRRARNGASRS,MEQAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHSLGQHIYETYGDTWAGVEAIIRILQQLLFIHFRIGCQHSRIGILQRRRARNGASRS*,ATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACACTAGAGCTTTTAGAGGAGCTTAAGAATGAAGCTGTTAGACACTTTCCTAGGCCATGGCTACACAGCTTAGGGCAACATATCTATGAAACATATGGAGATACTTGGGCAGGAGTGGAAGCCATAATAAGAATTCTGCAACAACTGCTGTTTATTCATTTCAGAATTGGGTGTCAACATAGCAGAATAGGCATCCTTCAACGGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAG +OQ092465,tat_exon1,5895,6111,5237,5452,forward,0.28735632183908044,MEPVDPRLEPWKHPGSQPRTACTSCYCKQCCFHCQVCFITKGLGISYGRKKRRQRRRAHQDSQTHQASLSKQ,MEPVDPRLEPWKHPGSQPRTACTSCYCKQCCFHCQVCFITKGLGISYGRKKRRQRRRAHQDSQTHQASLSKQ,ATGGAGCCAGTAGATCCTAGATTAGAGCCCTGGAAGCATCCAGGAAGTCAGCCTAGGACTGCTTGTACCTCTTGTTATTGTAAGCAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAACAAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCATCAAGACAGTCAGACTCATCAAGCTTCTCTATCAAAGCAG +OQ092465,rev_exon1,6034,6112,5376,5452,forward,0.48200514138817474,MAGRSGDSDEELIKTVRLIKLLYQSS,MAGRSGDSDEELIKTVRLIKLLYQSS,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCATCAAGACAGTCAGACTCATCAAGCTTCTCTATCAAAGCAGT +OQ092465,vpu,6126,6375,5468,5708,forward,0.3306914457502049,MQPLVISAIVALVVVAIIAIVVWSIVLIEYRKILRQRKIDRIIDRIRERAEDSGNESEGDQEELSALVVEMGHDAPWDVNDL,MQPLVISAIVALVVVAIIAIVVWSIVLIEYRKILRQRKIDRIIDRIRERAEDSGNESEGDQEELSALVVEMGHDAPWDVNDL*,ATGCAACCTTTAGTAATATCAGCAATAGTAGCATTAGTAGTAGTAGCGATAATAGCAATAGTTGTGTGGTCCATAGTACTCATAGAATATAGGAAAATATTAAGACAAAGAAAAATAGACAGGATAATTGATAGAATAAGGGAAAGAGCAGAAGACAGTGGCAATGAGAGCGAGGGGGATCAGGAAGAATTATCAGCACTTGTTGTGGAGATGGGGCACGATGCTCCTTGGGATGTTAATGATCTGTAG +OQ092465,env,6289,8881,5631,8208,forward,0.45848772344150845,MRARGIRKNYQHLLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEATTTLFCASDAKAYGTEVHNVWATHACVPTDPNPQEVVLGNVTENFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTNYNNTGANNTTSTNTTTPSTTVSSEERMGEGEIKNCSFNITTSLRDKMQKEYALFYRPDIVPIDNTSYRLISCNTSVITQACPKVTFEPIPIHYCAPAGFAILKCNNKTFNGSGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVIRSENFSDNAKNIIVHLNKSVEITCIRPNNNTRKSIPMGPGKAFFATGAIIGDIRQAHCKINKTKWNNTLEQVFKKLREQFGNNKTIIFNHSSGGDPEIVTHNFNCGGEFFYCNTSKLFNSTWNETSYWKGEGSNNDTITLPCRIKQIINLWQEVGKAMYAPPIRGLIKCSSNITGLLLTRDGGNESETTDTETFRPVGGNMKDNWRSELYKYKVVKIEPLGIAPTKAKRRVVQREKRAVGLGAMFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKNLTQIWDNMTWMQWEKEIDNYTSLIYTLIEESQNQQEKNELELLELDKWASLWNWFDITKWLWYIKIFIMIVGGLVGLRIVFAVLSIANRVRQGYSPLSFQTHLPAPRGPDRPEGIEGEGGERDRDRSGPLVNGFLAIIWVDLRSLCLFSYHRLRDLLLIVTRIVELLGRGGWELLKYWWNLLQYWSQELKNSAISLLNATAIAVAEGTDRIIEVLQRAGRAFLHIPRRIRQGLERALL,MRARGIRKNYQHLLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEATTTLFCASDAKAYGTEVHNVWATHACVPTDPNPQEVVLGNVTENFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTNYNNTGANNTTSTNTTTPSTTVSSEERMGEGEIKNCSFNITTSLRDKMQKEYALFYRPDIVPIDNTSYRLISCNTSVITQACPKVTFEPIPIHYCAPAGFAILKCNNKTFNGSGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVIRSENFSDNAKNIIVHLNKSVEITCIRPNNNTRKSIPMGPGKAFFATGAIIGDIRQAHCKINKTKWNNTLEQVFKKLREQFGNNKTIIFNHSSGGDPEIVTHNFNCGGEFFYCNTSKLFNSTWNETSYWKGEGSNNDTITLPCRIKQIINLWQEVGKAMYAPPIRGLIKCSSNITGLLLTRDGGNESETTDTETFRPVGGNMKDNWRSELYKYKVVKIEPLGIAPTKAKRRVVQREKRAVGLGAMFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKNLTQIWDNMTWMQWEKEIDNYTSLIYTLIEESQNQQEKNELELLELDKWASLWNWFDITKWLWYIKIFIMIVGGLVGLRIVFAVLSIANRVRQGYSPLSFQTHLPAPRGPDRPEGIEGEGGERDRDRSGPLVNGFLAIIWVDLRSLCLFSYHRLRDLLLIVTRIVELLGRGGWELLKYWWNLLQYWSQELKNSAISLLNATAIAVAEGTDRIIEVLQRAGRAFLHIPRRIRQGLERALL*,ATGAGAGCGAGGGGGATCAGGAAGAATTATCAGCACTTGTTGTGGAGATGGGGCACGATGCTCCTTGGGATGTTAATGATCTGTAGCGCTACAGAAAAATTGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAAAGAAGCAACTACCACTCTATTTTGTGCATCAGATGCTAAAGCATATGGTACAGAGGTACATAATGTGTGGGCTACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGTATTGGGAAATGTGACAGAGAATTTTAACATGTGGAAAAATGACATGGTAGAACAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGTCTAAAACCATGTGTAAAATTAACCCCACTCTGTGTTACTTTGAATTGCACTAATTATAATAACACTGGTGCCAATAATACCACTAGTACCAATACTACCACCCCTAGTACCACTGTTAGTAGCGAGGAAAGGATGGGGGAAGGAGAAATAAAAAACTGCTCTTTCAATATCACCACAAGCCTAAGAGATAAGATGCAGAAAGAATATGCACTCTTTTATAGACCTGATATAGTACCAATAGATAATACTAGTTATAGGTTGATAAGTTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTAACCTTTGAGCCAATTCCCATACATTATTGTGCCCCAGCTGGTTTTGCGATTCTAAAGTGTAACAATAAGACGTTCAATGGATCAGGACCATGTACAAATGTCAGCACAGTACAATGTACACATGGAATTAGGCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTCTAGCAGAAGAAGAGATAGTAATTAGATCTGAAAATTTCTCAGACAATGCTAAAAACATAATAGTACATCTGAATAAATCTGTAGAAATTACTTGTATAAGACCCAACAACAATACAAGAAAAAGTATACCTATGGGACCAGGGAAAGCATTTTTTGCAACAGGAGCCATAATAGGAGATATAAGACAAGCACATTGTAAAATTAATAAAACGAAATGGAATAACACTTTAGAGCAGGTATTTAAAAAGTTAAGAGAACAATTTGGGAATAATAAGACAATAATCTTTAATCACTCCTCAGGAGGGGACCCAGAAATTGTAACGCACAATTTTAATTGTGGAGGGGAATTTTTCTACTGTAATACATCAAAACTGTTTAATAGTACTTGGAATGAGACTAGTTATTGGAAGGGTGAAGGGTCAAACAATGACACTATCACACTCCCATGCAGAATAAAGCAAATTATAAACCTGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCATCAGAGGACTCATTAAATGTTCATCAAATATCACAGGGCTACTATTAACAAGAGATGGTGGTAACGAGAGCGAGACCACCGACACTGAGACCTTCAGACCTGTAGGAGGAAATATGAAGGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAAAATTGAACCATTAGGAATAGCACCCACCAAGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGATTAGGAGCTATGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAATAACGCTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAACAGCAGAACAATTTGCTGAGGGCTATTGAGGCGCAACAGCATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTAAAGGATCAACAGCTCCTGGGAATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCTTGGAATGCTAGTTGGAGTAATAAAAATCTGACACAGATTTGGGATAACATGACCTGGATGCAATGGGAAAAAGAAATTGACAATTACACAAGCTTAATATACACCTTAATTGAAGAATCGCAAAACCAACAAGAAAAGAATGAACTAGAATTATTGGAATTAGATAAATGGGCAAGTTTGTGGAATTGGTTTGACATAACAAAGTGGCTGTGGTATATAAAAATATTCATAATGATAGTAGGAGGCTTGGTAGGTTTAAGAATAGTTTTTGCTGTGCTTTCTATAGCGAATAGAGTTAGGCAGGGATACTCACCATTATCGTTTCAGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCAGAAGGAATCGAAGGAGAAGGTGGAGAGAGAGACAGAGACAGATCCGGACCATTAGTGAACGGATTCTTAGCAATTATCTGGGTCGACCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAACGAGGATTGTGGAACTTCTGGGACGCGGGGGGTGGGAACTCCTCAAGTATTGGTGGAATCTCCTGCAGTATTGGAGTCAGGAACTAAAGAATAGTGCTATTAGCTTGCTTAATGCTACAGCCATAGCAGTAGCTGAGGGGACAGATAGGATTATAGAAGTATTACAAAGAGCAGGGAGAGCTTTTCTCCACATACCTAGAAGAATAAGACAGGGCTTGGAAAGGGCTTTGCTATAA +OQ092465,tat_exon2,8462,8558,7789,7882,forward,0.8495145631067962,RPTSQPRGDPTGQKESKEKVERETETDPDH,RPTSQPRGDPTGQKESKEKVERETETDPDH**,AGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCAGAAGGAATCGAAGGAGAAGGTGGAGAGAGAGACAGAGACAGATCCGGACCATTAGTGA +OQ092465,rev_exon2,8463,8739,7790,8066,forward,0.4024571065452235,DPPPSPEGTRQARRNRRRRWRERQRQIRTISERILSNYLGRPAEPVPLQLPPLERLTLDCNEDCGTSGTRGVGTPQVLVESPAVLESGTKE,DPPPSPEGTRQARRNRRRRWRERQRQIRTISERILSNYLGRPAEPVPLQLPPLERLTLDCNEDCGTSGTRGVGTPQVLVESPAVLESGTKE*,GACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCAGAAGGAATCGAAGGAGAAGGTGGAGAGAGAGACAGAGACAGATCCGGACCATTAGTGAACGGATTCTTAGCAATTATCTGGGTCGACCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAACGAGGATTGTGGAACTTCTGGGACGCGGGGGGTGGGAACTCCTCAAGTATTGGTGGAATCTCCTGCAGTATTGGAGTCAGGAACTAAAGAATAG +OQ092465,nef,8882,9515,8209,8842,forward,0.3463855421686747,MGGKWSKSSVVGWPKIRERMRRAEPAAEPAADGVGAASRDLEKHGAITSSNTAATNADCAWLEAQEEEEVGFPVRPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIYSQKRQDILDLWVYHTQGYFPDWQNYTPGPGIRYPLTFGWCFKLVPVEPDKVEEANEGENNSLLHPMSLHGMDDPEKEVLVWRFDSRLAFHHMARELHPEYYKDC,MGGKWSKSSVVGWPKIRERMRRAEPAAEPAADGVGAASRDLEKHGAITSSNTAATNADCAWLEAQEEEEVGFPVRPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIYSQKRQDILDLWVYHTQGYFPDWQNYTPGPGIRYPLTFGWCFKLVPVEPDKVEEANEGENNSLLHPMSLHGMDDPEKEVLVWRFDSRLAFHHMARELHPEYYKDC*,ATGGGTGGCAAGTGGTCAAAAAGTAGTGTGGTTGGATGGCCTAAAATAAGGGAAAGAATGAGACGAGCTGAGCCAGCAGCAGAACCAGCAGCAGATGGGGTGGGAGCAGCATCTCGAGACCTGGAAAAACATGGAGCAATCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGTGCCTGGCTAGAAGCACAAGAGGAGGAGGAGGTGGGTTTTCCAGTCAGGCCTCAGGTACCTTTAAGACCAATGACTTATAAGGCAGCTGTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCCCAGAAAAGACAAGATATCCTTGATCTGTGGGTCTACCACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGATCAGATATCCACTGACCTTTGGATGGTGCTTCAAGCTAGTACCAGTTGAGCCAGATAAGGTAGAAGAGGCCAATGAAGGAGAGAACAACAGCTTGTTACACCCTATGAGCCTGCATGGGATGGATGACCCAGAGAAAGAAGTGTTAGTATGGAGATTTGACAGTCGCCTGGCATTTCATCACATGGCCCGAGAGCTGCATCCGGAGTACTACAAGGACTGCTGA +OQ092462,gag,767,2270,789,2292,forward,0.3086529884032113,MGARASVLSGGELDKWEKIRLRPGGKKKYQLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPALQTGSEELKSLFHTVATLYCVHQKIEVKDTKEALEKIEEEQKKSKKKAQQAAADTGNNSQVSQNYPIVQNMQGQMVHQPLSPRTLNAWVKVIEDKAFSPEVIPMFTALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVQAGPVAPGQLREPRGSDIAGTTSNLQEQIAWMTHNPPVPVGEIYKRWILLGLNKIVRMYSPVSILDIKQGPKEPFRDYVDRFYKTLRAEQASQDVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPSHKARVLAEAMSQVANPASIMMQRGNFRNQRKPIKCFNCGKEGHIAKNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKVWPSRKGRPGNFLQSRPEPTAPPEESFRFGEETTTPSQKPEPIDKELYPLASLRSLFGNDPSSQ,MGARASVLSGGELDKWEKIRLRPGGKKKYQLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPALQTGSEELKSLFHTVATLYCVHQKIEVKDTKEALEKIEEEQKKSKKKAQQAAADTGNNSQVSQNYPIVQNMQGQMVHQPLSPRTLNAWVKVIEDKAFSPEVIPMFTALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVQAGPVAPGQLREPRGSDIAGTTSNLQEQIAWMTHNPPVPVGEIYKRWILLGLNKIVRMYSPVSILDIKQGPKEPFRDYVDRFYKTLRAEQASQDVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPSHKARVLAEAMSQVANPASIMMQRGNFRNQRKPIKCFNCGKEGHIAKNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKVWPSRKGRPGNFLQSRPEPTAPPEESFRFGEETTTPSQKPEPIDKELYPLASLRSLFGNDPSSQ*,ATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAGAATTAGACAAATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATCAGCTAAAACATATAGTATGGGCAAGCAGGGAACTAGAGCGATTTGCAGTTAATCCCGGCCTGTTAGAAACATCGGAGGGCTGTAGACAAATACTAGGGCAACTACAGCCCGCTCTTCAGACAGGATCAGAAGAACTTAAATCACTATTTCATACAGTAGCAACCCTCTATTGTGTGCATCAAAAGATAGAGGTGAAAGACACCAAAGAAGCTTTAGAGAAGATAGAGGAAGAGCAAAAGAAAAGTAAGAAAAAGGCACAGCAAGCAGCCGCTGACACAGGAAATAACAGCCAGGTCAGCCAAAATTACCCTATAGTGCAGAACATGCAGGGACAAATGGTACATCAGCCCCTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAATAGAAGATAAGGCTTTCAGTCCAGAAGTAATACCCATGTTTACAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAATACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATCAATGAGGAAGCTGCAGAATGGGATAGATTACATCCAGTGCAGGCAGGGCCTGTTGCGCCAGGCCAGCTACGAGAGCCAAGGGGAAGTGACATAGCAGGAACTACTAGTAACCTTCAGGAGCAAATAGCATGGATGACACATAATCCACCTGTCCCAGTAGGAGAAATCTATAAAAGATGGATACTTCTGGGATTAAATAAAATAGTAAGAATGTACAGCCCCGTCAGCATTCTGGACATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAAAACTCTAAGAGCTGAGCAGGCTTCACAGGATGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAGAATGCGAACCCAGATTGTAAGACTATTTTGAAAGCATTAGGACCAGCAGCTACATTAGAAGAAATGATGACAGCATGTCAGGGAGTAGGAGGACCCAGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAGCAAATCCAGCTAGCATAATGATGCAGAGAGGCAATTTTAGAAACCAAAGAAAGCCTATTAAGTGTTTCAACTGTGGCAAAGAGGGGCATATTGCTAAAAATTGCAGGGCCCCTAGGAAAAGGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGATTGTACTGAGAGACAGGCTAATTTTTTAGGGAAGGTCTGGCCTTCCCGCAAGGGGAGGCCAGGGAATTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACGACAACTCCCTCTCAGAAACCGGAGCCGATAGACAAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAA +OQ092462,pol,2062,5074,2084,5096,forward,0.1943357603710517,FFREGLAFPQGEAREFPSEQTRANSPTRRELQVWGRDDNSLSETGADRQGTVSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPRVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPIFAIKKKDGNKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRAKIEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPILLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVVPLTAEAELELAENREILKEPVHGVYYDPSKDLIAELQKQGQGQWTYQIYQEPYKNLKTGKYARMRGTHTNDIKQLTEAVQKIATESIVIWGKTPKFKLPIQKETWEAWWIEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDKGRQKVVPLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLKGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQEVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFVHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED,FFREGLAFPQGEAREFPSEQTRANSPTRRELQVWGRDDNSLSETGADRQGTVSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPRVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPIFAIKKKDGNKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRAKIEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPILLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVVPLTAEAELELAENREILKEPVHGVYYDPSKDLIAELQKQGQGQWTYQIYQEPYKNLKTGKYARMRGTHTNDIKQLTEAVQKIATESIVIWGKTPKFKLPIQKETWEAWWIEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDKGRQKVVPLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLKGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQEVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFVHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAGGTCTGGCCTTCCCGCAAGGGGAGGCCAGGGAATTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACGACAACTCCCTCTCAGAAACCGGAGCCGATAGACAAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAGGAGGGCAACTAAAGGAAGCTCTATTAGACACAGGAGCAGATGATACAGTTTTAGAAGAAATGAATTTGCCAGGAAAATGGAAGCCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACTCATAGAAATCTGTGGACATAAAGCTATAGGTACAGTGTTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAAATTGGCTGCACTTTAAATTTTCCCATTAGCCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAGAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAACAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATCTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAATATTTGCCATAAAGAAGAAAGATGGTAATAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCTGCTGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATAAGGACTTCAGGAAGTATACTGCATTTACAATACCTAGCACAAACAATGAGACACCAGGGATTAGATACCAGTACAATGTGCTGCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATTTTGGAGCCTTTTAGAAAACAAAATCCAGACATAGTTATTTATCAATACATGGATGATTTATATGTAGGGTCTGACTTAGAAATAGGGCAGCATAGAGCAAAAATAGAGGAACTGAGACAACATCTATTGAAGTGGGGATTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCCGATAAATGGACAGTACAGCCTATATTGCTGCCAGAAAAAGACAGCTGGACTGTTAATGACATACAGAAGTTAGTGGGAAAATTGAACTGGGCAAGTCAGATTTACCCAGGAATCAAAGTAAGGCAGCTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAAGTGGTACCACTAACAGCAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAGATTCTAAAAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGATTTAATAGCAGAACTACAGAAGCAGGGGCAAGGCCAATGGACATATCAAATTTATCAAGAGCCATATAAAAATCTGAAAACAGGAAAGTATGCAAGAATGAGAGGTACCCACACTAATGATATAAAACAATTAACAGAGGCAGTGCAAAAAATAGCTACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAATTACCCATACAAAAGGAAACATGGGAAGCATGGTGGATAGAGTATTGGCAAGCCACCTGGATTCCTGAATGGGAGTTTGTCAATACCCCTCCCTTAGTGAAACTATGGTACCAGTTGGAAAAAGAACCCATAGTGGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGGGAAACTAAATTAGGAAAAGCAGGATATGTTACTGACAAAGGAAGACAAAAAGTTGTCCCCCTAACGGACACAACAAATCAGAAGACTGAGCTACAAGCAATTCATCTAGCTTTGCAGGATTCAGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATAAGAGTGAATCAGAACTAGTCAGTCAAATAATAGAGCAGTTAATAAAGAAGGAAAAGGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAGTTAGTCAGTGCTGGAATCAGGAAAGTACTATTTTTAGATGGAATAGATAAGGCCCAAGAAGAACATGAGAAATATCACAGTAATTGGAGAGCAATGGCTAGTGACTTTAACCTGCCACCTATAGTAGCAAAGGAAATAGTAGCCAGTTGTGACAAATGTCAGTTAAAAGGAGAAGCCATGCATGGACAAGTAGACTGTAGTCCTGGAATATGGCAGCTAGATTGTACACATCTAAAAGGAAAAATTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAAGAAACAGCATACTTTCTCTTGAAATTAGCAGGAAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTAATGTGGTTAAGGCTGCCTGTTGGTGGGCGGGGATCAAACAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGAAGTAATAGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCAGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCGTCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAATAGACATAATAGCAACAGACATACAAACCAAAGAATTACAAAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGACATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATTATCAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG +OQ092462,vif,5018,5597,5040,5619,forward,0.3566796368352788,MENRWQVMIVWQVDRMRIRTWKSLVKHHMHISRKAKNWLYRHHYESIHPRISSEVHIPLGDARLVITTYWGLLTGERDWHLGQGVSIEWRERRYRTQVDPDLADQLIHLYYFDCFSESAIRNALLGRVVSPRCEYQAGHNQVGSLQYLALTALITPKRRKPPLPSVRKLTEDRWNKPQKTKGHKGSHTMNGH,MENRWQVMIVWQVDRMRIRTWKSLVKHHMHISRKAKNWLYRHHYESIHPRISSEVHIPLGDARLVITTYWGLLTGERDWHLGQGVSIEWRERRYRTQVDPDLADQLIHLYYFDCFSESAIRNALLGRVVSPRCEYQAGHNQVGSLQYLALTALITPKRRKPPLPSVRKLTEDRWNKPQKTKGHKGSHTMNGH*,ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAAGAGTTTAGTAAAACATCATATGCATATATCAAGGAAAGCTAAGAATTGGTTGTATAGACATCACTATGAAAGCATTCATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTAGTAATAACAACATATTGGGGTCTGCTTACAGGAGAAAGAGACTGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGGGAAAGGAGATATAGAACACAAGTAGACCCTGACCTAGCAGACCAACTAATTCATCTGTATTATTTTGATTGTTTTTCAGAGTCTGCTATAAGAAATGCCTTATTAGGACGTGTAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAACCAGGTAGGATCTCTACAGTACTTGGCACTAACAGCATTAATAACACCAAAAAGGAGAAAGCCACCTTTGCCTAGTGTTAGGAAACTGACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCACAAAGGGAGCCATACAATGAATGGGCACTAG +OQ092462,vpr,5536,5830,5558,5850,forward,0.3452477660438652,MEQAPEDQGPQREPYNEWALELLEELKSEAVRHFPRIWLHGLGQHIYETYGDTWAGVEAIIRILQQLLFIHFRIGCRHSRIGINLQRRARNGSSRS,MEQAPEDQGPQREPYNEWALELLEELKSEAVRHFPRIWLHGLGQHIYETYGDTWAGVEAIIRILQQLLFIHFRIGCRHSRIGINLQRRARNGSSRS*P,ATGGAACAAGCCCCAGAAGACCAAGGGCCACAAAGGGAGCCATACAATGAATGGGCACTAGAACTTTTAGAGGAACTTAAAAGTGAAGCTGTTAGACATTTTCCTAGGATATGGCTTCATGGATTGGGACAGCATATCTATGAAACATATGGGGATACTTGGGCAGGAGTGGAAGCCATAATAAGAATTCTGCAACAACTGCTGTTTATTCATTTCAGAATTGGATGTCGACATAGCAGAATAGGCATTAATCTACAGAGGAGAGCAAGGAATGGATCCAGTAGATCCTAGCCT +OQ092462,tat_exon1,5807,6026,5830,6045,forward,0.40192926045016075,MDPVDPSLEPWKHPGSQPKTACTNCYCKKCCFHCQVCFIKKGLGISYGRKKRRQRRRASQGSETHQVSLPKQ,MDPVDPSLEPWKHPGSQPKTACTNCYCKKCCFHCQVCFIKKGLGISYGRKKRRQRRRASQGSETHQVSLPKQ*,ATGGATCCAGTAGATCCTAGCCTAGAGCCCTGGAAGCATCCAGGAAGTCAGCCTAAGACTGCTTGTACCAATTGTTATTGTAAAAAGTGCTGCTTTCATTGCCAAGTTTGTTTCATAAAAAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTTCTCAAGGCAGTGAGACTCATCAAGTTTCTCTACCAAAGCAGTAA +OQ092462,rev_exon1,5946,6024,5969,6045,forward,0.48200514138817474,MAGRSGDSDEELLKAVRLIKFLYQSS,MAGRSGDSDEELLKAVRLIKFLYQSS,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTTCTCAAGGCAGTGAGACTCATCAAGTTTCTCTACCAAAGCAGT +OQ092462,vpu,6038,6284,6061,6310,forward,0.5328923190003676,MRPLEIAAIVALVVAVLIAIVVWSIVLIEYRKILRQRKIDRIVDRIRERAEDSGNESEGDQEELSALVERGHLAPWDIDDL,MRPLEIAAIVALVVAVLIAIVVWSIVLIEYRKILRQRKIDRIVDRIRERAEDSGNESEGDQEELSALVERGHLAPWDIDDL*,ATGCGACCTTTAGAAATAGCAGCAATAGTAGCACTAGTAGTAGCAGTACTAATAGCAATAGTTGTGTGGTCTATAGTACTCATAGAATATAGGAAAATATTAAGACAAAGAAAAATAGACAGGATAGTGGATAGAATAAGAGAAAGAGCAGAAGATAGTGGAAATGAGAGTGAAGGGGATCAGGAGGAATTATCAGCACTGGTGGAGAGGGGGCACCTTGCTCCTTGGGATATTGATGATCTGTAG +OQ092462,env,6201,8844,6224,8795,forward,0.47893021246514556,MRVKGIRRNYQHWWRGGTLLLGILMICSATENLWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPSPQEVVLKNVTEKFNMWKNNMVEQMHQDIISLWDESLKPCVKLTPLCVTLNCTNATISGNATEEIKNCSFNVNTKIGGKKQKERALFYKLDVVPIDDDSTNRTNTSYRLISCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCGDKEFNGTGLCRNVSTVQCTHGIRPVVSTQLLLNGSLAEGEVVIKSENITNNVKTIIVQLNETVSINCTRPSNNTRRSIHMGPGRAFYATGEIIGDIRKAQCILNKTDWSDTLTRIAKKLHKQFHGPIAFEQSSGGDPEITMHTFNCGGEFFYCNTSALFSGTWNGTAWTNATWGNIAGNNITLQCRIKQFINRWQEVGKAMYAPPIRGEIRCSSNITGLLLTRDGGSNTTNGGENGTQIGENVTQIFRPGGGDMRDNWRSELYKYKVVKIEPLGIAPTKAKRRVVQREKRAVTFGALFLGFLGAAGSTMGAASMTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARILAVERYLRDQQLLGIWGCSGKLICTTTVPWNASWSNKTLEKIWGNMTWMEWEREIDNYTDLIYTLIEQSQNQQEKNEQELLELDKWAGLWNWFDITNWLWYIKIFIMIVGGLVGLRIVFAVLSIVNRVRQGYSPLSFQTRLPASRGPDRPEGTDEEGGERDRDRSGSLVNGFLALIWIDLRSLFLFSYLRLRDLLLIAARIVELLGRRGWEALKYWWNLLQYWSQELKNSAVSLLNAIAISVAEGTDRIIEAIQRICRAILHIPTRIRQGLERALL,MRVKGIRRNYQHWWRGGTLLLGILMICSATENLWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPSPQEVVLKNVTEKFNMWKNNMVEQMHQDIISLWDESLKPCVKLTPLCVTLNCTNATISGNATEEIKNCSFNVNTKIGGKKQKERALFYKLDVVPIDDDSTNRTNTSYRLISCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCGDKEFNGTGLCRNVSTVQCTHGIRPVVSTQLLLNGSLAEGEVVIKSENITNNVKTIIVQLNETVSINCTRPSNNTRRSIHMGPGRAFYATGEIIGDIRKAQCILNKTDWSDTLTRIAKKLHKQFHGPIAFEQSSGGDPEITMHTFNCGGEFFYCNTSALFSGTWNGTAWTNATWGNIAGNNITLQCRIKQFINRWQEVGKAMYAPPIRGEIRCSSNITGLLLTRDGGSNTTNGGENGTQIGENVTQIFRPGGGDMRDNWRSELYKYKVVKIEPLGIAPTKAKRRVVQREKRAVTFGALFLGFLGAAGSTMGAASMTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARILAVERYLRDQQLLGIWGCSGKLICTTTVPWNASWSNKTLEKIWGNMTWMEWEREIDNYTDLIYTLIEQSQNQQEKNEQELLELDKWAGLWNWFDITNWLWYIKIFIMIVGGLVGLRIVFAVLSIVNRVRQGYSPLSFQTRLPASRGPDRPEGTDEEGGERDRDRSGSLVNGFLALIWIDLRSLFLFSYLRLRDLLLIAARIVELLGRRGWEALKYWWNLLQYWSQELKNSAVSLLNAIAISVAEGTDRIIEAIQRICRAILHIPTRIRQGLERALL*DGWQGVKNEGMGCCKGKNEAN*,ATGAGAGTGAAGGGGATCAGGAGGAATTATCAGCACTGGTGGAGAGGGGGCACCTTGCTCCTTGGGATATTGATGATCTGTAGTGCCACAGAGAACTTGTGGGTCACAGTCTACTATGGGGTACCTGTGTGGAAAGAAGCAACCACCACTTTATTTTGTGCATCAGATGCCAAAGCATATGATACAGAGGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAGCCCACAAGAAGTAGTATTGAAAAATGTGACAGAAAAGTTTAATATGTGGAAAAATAACATGGTAGAACAGATGCATCAGGATATAATCAGTTTATGGGATGAAAGCCTAAAACCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCACTAATGCTACTATCAGTGGTAATGCAACAGAAGAAATAAAAAACTGCTCTTTCAATGTCAATACAAAAATAGGAGGTAAGAAGCAGAAAGAACGTGCACTTTTTTATAAACTTGATGTAGTACCAATAGATGATGATAGTACTAATAGGACTAATACCAGCTATAGGTTGATAAGTTGTAACACTTCAGTCATTACACAAGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTGGAGATAAAGAGTTCAATGGAACAGGACTATGTAGAAATGTCAGCACAGTCCAATGTACACATGGAATCAGGCCAGTAGTATCAACTCAATTGCTGTTGAATGGCAGTCTAGCAGAAGGAGAGGTAGTAATTAAATCTGAAAATATCACGAACAATGTTAAAACCATAATAGTACAGCTAAATGAAACTGTATCAATTAATTGTACAAGACCTAGCAACAATACAAGAAGAAGCATACATATGGGACCAGGGAGAGCCTTTTATGCAACAGGAGAAATAATAGGAGATATAAGGAAAGCACAGTGTATCCTGAATAAGACAGACTGGAGTGACACTTTAACAAGGATAGCTAAAAAATTACACAAGCAATTTCATGGACCAATAGCATTTGAGCAATCCTCAGGAGGGGACCCTGAAATTACAATGCACACTTTTAATTGTGGAGGGGAATTTTTCTACTGCAACACATCAGCGTTGTTTAGCGGGACCTGGAATGGTACTGCTTGGACTAATGCTACTTGGGGTAATATTGCAGGTAACAATATCACACTCCAATGCAGAATAAAACAATTTATAAACAGATGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCATCAGAGGAGAAATTAGATGTTCATCAAATATTACAGGGCTGCTATTAACAAGAGATGGTGGCAGTAACACAACAAATGGTGGCGAGAATGGGACCCAGATTGGCGAGAATGTGACCCAGATCTTCAGACCTGGAGGAGGGGATATGAGGGACAATTGGAGAAGTGAATTATACAAATATAAAGTAGTAAAAATTGAGCCATTAGGAATAGCACCCACCAAGGCAAAAAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTAACATTCGGAGCTTTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAATGACACTGACGGTACAGGCCAGACTATTATTGTCTGGTATAGTGCAACAGCAGAACAATCTGCTGAGAGCTATTGAGGCGCAACAACATCTGTTGCAACTCACAGTCTGGGGCATCAAACAGCTTCAGGCAAGAATCCTGGCTGTGGAAAGATACCTAAGGGATCAACAGCTCCTAGGGATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTACTGTGCCTTGGAATGCTAGTTGGAGTAATAAAACTCTGGAAAAAATTTGGGGGAACATGACCTGGATGGAGTGGGAGAGAGAAATTGACAATTATACAGACTTAATATACACCTTAATTGAACAATCGCAGAACCAACAAGAAAAGAATGAACAAGAATTATTGGAATTGGATAAATGGGCAGGCTTGTGGAATTGGTTTGACATAACAAACTGGCTGTGGTATATAAAAATATTCATAATGATAGTAGGAGGTTTAGTAGGTTTAAGAATAGTTTTTGCTGTGCTTTCTATAGTAAATAGAGTTAGGCAGGGATACTCACCATTATCATTCCAGACCCGCCTCCCAGCCTCGAGGGGACCCGACAGGCCCGAAGGAACCGACGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGGATCATTAGTGAACGGATTCTTAGCACTCATCTGGATCGACCTGCGGAGTCTGTTCCTCTTCAGCTACCTCCGCTTGAGAGACTTACTCTTGATTGCAGCGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAGGCCCTCAAATATTGGTGGAATCTCCTGCAGTATTGGAGTCAGGAACTAAAGAATAGTGCTGTTAGTTTGCTTAATGCTATAGCTATATCAGTAGCGGAGGGAACAGATAGGATTATAGAAGCAATACAAAGAATTTGTAGAGCTATCTTACACATACCTACAAGGATAAGACAGGGCTTAGAAAGGGCTTTGCTATAAGATGGGTGGCAAGGGGTCAAAAATGAGGGGATGGGTTGCTGTAAGGGAAAAAATGAGGCGAACTAA +OQ092462,tat_exon2,8359,8455,8376,8469,forward,0.439759036144578,RPASQPRGDPTGPKEPTKKVERETETDPDH,RPASQPRGDPTGPKEPTKKVERETETDPDH**,AGACCCGCCTCCCAGCCTCGAGGGGACCCGACAGGCCCGAAGGAACCGACGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGGATCATTAGTGA +OQ092462,rev_exon2,8360,8636,8377,8653,forward,0.38952607660679506,DPPPSLEGTRQARRNRRRRWRERQRQIRIISERILSTHLDRPAESVPLQLPPLERLTLDCSEDCGTSGTQGVGGPQILVESPAVLESGTKE,DPPPSLEGTRQARRNRRRRWRERQRQIRIISERILSTHLDRPAESVPLQLPPLERLTLDCSEDCGTSGTQGVGGPQILVESPAVLESGTKE*,GACCCGCCTCCCAGCCTCGAGGGGACCCGACAGGCCCGAAGGAACCGACGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGGATCATTAGTGAACGGATTCTTAGCACTCATCTGGATCGACCTGCGGAGTCTGTTCCTCTTCAGCTACCTCCGCTTGAGAGACTTACTCTTGATTGCAGCGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAGGCCCTCAAATATTGGTGGAATCTCCTGCAGTATTGGAGTCAGGAACTAAAGAATAG +OQ092462,nef,8779,9406,8796,9417,forward,0.5448794461685341,MGGKGSKMRGWVAVREKMRRTKPEDEPAANGVGAASRDLEKYGALTSSNTVATNADLAWLEAQEEEEVGFPVRPQVPLRPMTYKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVHHTQGYLPDWQNYTPGPGIRYPLTFGWCFKLVPVEPDQVEEANAGENNSLLHPMSLHGIEDPEKEVLMWKFDSHLAFRHMARELHPEYYKDC,MGGKGSKMRGWVAVREKMRRTKPEDEPAANGVGAASRDLEKYGALTSSNTVATNADLAWLEAQEEEEVGFPVRPQVPLRPMTYKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVHHTQGYLPDWQNYTPGPGIRYPLTFGWCFKLVPVEPDQVEEANAGENNSLLHPMSLHGIEDPEKEVLMWKFDSHLAFRHMARELHPEYYKDC*,ATGGGTGGCAAGGGGTCAAAAATGAGGGGATGGGTTGCTGTAAGGGAAAAAATGAGGCGAACTAAGCCAGAAGATGAGCCAGCAGCAAATGGGGTGGGGGCAGCATCTCGAGACTTGGAGAAATATGGCGCACTCACAAGTAGCAATACAGTAGCTACTAATGCTGATTTAGCTTGGCTAGAAGCACAAGAGGAAGAGGAGGTGGGCTTTCCAGTCAGACCTCAAGTACCTTTAAGACCAATGACTTACAAGGGAGCTCTAGATCTCAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCCCAAAAAAGGCAAGATATCCTTGATCTGTGGGTTCACCACACACAAGGCTATCTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGATCAGATATCCCCTGACTTTTGGATGGTGCTTCAAGCTAGTACCAGTTGAGCCAGATCAGGTAGAAGAGGCCAATGCAGGAGAGAACAACAGCTTGTTACACCCTATGAGCCTGCATGGGATAGAGGACCCGGAGAAAGAAGTCTTAATGTGGAAGTTTGACAGCCACCTAGCATTCCGTCACATGGCCCGAGAGCTGCATCCGGAGTATTACAAAGACTGCTGA +OQ092464,gag,773,2282,200,1700,forward,0.3836286378577728,MGARASVLSGGELDRWERIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSKGCRQILEQLQPALQTGSEELKSLYNTVATLYCVHQKIDVKDTKEALDKIEEEQNKSKKKAQQAAADTGNNSQASQNYPIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQCTQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTTPGTIMMQRGNLRSQRKTVKCFNCGKEGHIAKNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETTTPSQKQEPIDKEMYPLASLRSLFGNDPSSQ,MGARASVLSGGELDRWERIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSKGCRQILEQLQPALQTGSEELKSLYNTVATLYCVHQKIDVKDTKEALDKIEEEQNKSKKKAQQAAADTGNNSQASQNYPIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQCTQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTTPGTIMMQRGNLRSQRKTVKCFNCGKEGHIAKNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETTTPSQKQEPIDKEMYPLASLRSLFGNDPSSQ*R*,ATGGGTGCGAGAGCGTCGGTATTAAGCGGGGGAGAATTAGATAGATGGGAAAGAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAAATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGGTTCGCAGTTAATCCTGGCCTGTTAGAAACATCAAAAGGCTGTAGACAAATATTGGAACAGCTACAGCCAGCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATATAATACAGTAGCAACCCTCTATTGTGTGCATCAAAAGATCGATGTAAAAGACACCAAGGAAGCTTTAGATAAGATAGAGGAAGAGCAAAACAAAAGTAAGAAAAAAGCACAGCAAGCAGCAGCTGACACAGGAAACAACAGCCAGGCCAGCCAAAATTACCCTATAGTGCAGAACATTCAGGGGCAAATGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCGCTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGGATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGGATGTATAGCCCTACCAGCATTCTGGACATAAGACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAAAACTCTAAGAGCCGAACAATGTACACAGGAGGTAAAAAATTGGATGACAGAAACATTATTGGTCCAAAATGCAAACCCAGATTGCAAGACTATTTTAAAAGCATTAGGACCAGCAGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCTGGCCATAAAGCAAGAGTTTTGGCAGAAGCAATGAGCCAAGTAACAACTCCAGGTACCATAATGATGCAGAGAGGCAATTTAAGGAGCCAAAGAAAGACTGTTAAGTGTTTCAACTGTGGCAAAGAAGGGCATATAGCTAAAAATTGCAGGGCTCCTAGGAAAAGGGGCTGTTGGAAATGTGGAAAAGAAGGACACCAAATGAAAGATTGCACTGAGAGACAGGCTAATTTTTTAGGGAAGATCTGGCCTTCCCACAAGGGGAGGCCAGGGAATTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAACAACTCCCTCTCAGAAGCAGGAGCCGATAGACAAAGAAATGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAG +OQ092464,pol,2068,5080,1492,4504,forward,0.21863141758600757,FFREDLAFPQGEAREFSSEQTRANSPTRRELQVWGRDNNSLSEAGADRQRNVSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMTLPGRWKPKMIGGIGGFIKVRQYDQILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTEVIPLTREAELELAENREILKEPVHGVYYDPTKDLIVEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFRLPIQRETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKDKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIDKAQDDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGGNFISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVYIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED,FFREDLAFPQGEAREFSSEQTRANSPTRRELQVWGRDNNSLSEAGADRQRNVSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMTLPGRWKPKMIGGIGGFIKVRQYDQILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTEVIPLTREAELELAENREILKEPVHGVYYDPTKDLIVEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFRLPIQRETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKDKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIDKAQDDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGGNFISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVYIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAGATCTGGCCTTCCCACAAGGGGAGGCCAGGGAATTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAACAACTCCCTCTCAGAAGCAGGAGCCGATAGACAAAGAAATGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGACATGACTTTACCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACTCGTAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTAACTCAGATTGGTTGCACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATCTGTACAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATATAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCCGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATAAAGACTTCAGGAAGTATACTGCATTTACCATACCTAGTATAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGACATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAATTAAGACAACATCTGTTGAAGTGGGGATTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGATATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAGAAAAGGACAGTTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTGAATTGGGCAAGTCAGATTTACCCAGGGATTAAAGTAAAGCAATTATGTAAACTCCTTAGGGGAACCAAGGCACTAACAGAAGTAATACCACTAACAAGAGAAGCAGAGCTAGAACTGGCAGAGAACAGGGAAATTCTAAAAGAACCAGTACATGGAGTGTATTATGACCCAACAAAAGACTTAATAGTAGAAATACAGAAGCAGGGGCAAGGCCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGAGGTGCCCACACTAATGATGTAAAACAACTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAGTTTAGACTACCCATACAAAGAGAAACATGGGAAACATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAGACTTTCTATGTAGATGGTGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAACAGAGGAAGACAAAAAGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAGTTACAAGCAATTCATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATAAAAGTGAATCAGAGTTAGTTAATCAAATAATAGAACAGTTAATAAAAAAGGACAAGGTATACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTGCTGGAATCAGGAAAGTACTATTTTTAGATGGAATAGATAAGGCCCAAGACGATCATGAGAAATATCACAGTAATTGGAGAGCAATGGCTAGTGACTTTAACCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGCCAGTTAAAAGGGGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAACTAGATTGTACACACTTAGAAGGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTCTCTTAAAATTAGCAGGAAGATGGCCAGTAAAAACAATACATACAGACAATGGCGGCAATTTCATCAGTACTACAGTTAAGGCCGCCTGCTGGTGGGCGGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATACATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAGAGAATAGTAGACATAATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATTACAAAACTTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGACCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGACATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG +OQ092464,vif,5024,5603,4448,5027,forward,0.31992687385740404,MENRWQVMIVWQVDRMRIRTWKSLVKHHMYISRKAKGWVYKHHYDSTHPRISSEVHIPLGDAKLVITTYWGLHTGERDWHLGQGVSIEWRKKRYSTQVDPGLADQLIHLYYFDCFSESAIRNAILGHIVSPSCDYQAGHNKVGSLQYLALAALITPKKIKPPLPSVKKLTEDRWNKPQKTKGHRGSHTMNGH,MENRWQVMIVWQVDRMRIRTWKSLVKHHMYISRKAKGWVYKHHYDSTHPRISSEVHIPLGDAKLVITTYWGLHTGERDWHLGQGVSIEWRKKRYSTQVDPGLADQLIHLYYFDCFSESAIRNAILGHIVSPSCDYQAGHNKVGSLQYLALAALITPKKIKPPLPSVKKLTEDRWNKPQKTKGHRGSHTMNGH*,ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGGACATGGAAAAGTTTAGTAAAACACCATATGTATATTTCAAGGAAAGCTAAGGGATGGGTTTATAAGCATCACTATGACAGTACTCATCCAAGAATAAGTTCAGAAGTTCACATCCCGCTAGGGGATGCGAAATTGGTAATAACAACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGGAAGAAGAGATATAGCACACAAGTAGACCCTGGCTTAGCAGACCAACTAATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACATATAGTTAGTCCTAGCTGTGATTATCAAGCAGGACATAACAAGGTAGGATCTCTACAGTACTTGGCACTAGCAGCATTAATAACACCAAAAAAGATAAAGCCACCTTTGCCTAGTGTTAAGAAACTGACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACACTAG +OQ092464,vpr,5542,5833,4966,5257,forward,0.2515090543259557,MEQAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHSLGQHIYETYGDTWAGVEAIIRILQQLLFIHFRIGCRHSRIGIIQRRRARNGASRS,MEQAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHSLGQHIYETYGDTWAGVEAIIRILQQLLFIHFRIGCRHSRIGIIQRRRARNGASRS*,ATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACACTAGAGCTTTTAGAGGAGCTTAAGAATGAAGCTGTTAGACACTTTCCTAGGCCATGGCTCCACAGCTTAGGGCAACATATCTATGAAACATATGGAGATACTTGGGCAGGAGTGGAAGCCATAATAAGAATTCTGCAACAACTGCTGTTTATTCATTTCAGAATTGGGTGTCGACATAGCAGAATAGGCATCATTCAACGGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAG +OQ092464,tat_exon1,5813,6032,5237,5452,forward,0.28735632183908044,MEPVDPRLEPWKHPGSQPRTACTSCYCKQCCFHCQVCFITKGLGISYGRKKRRQRRRAPPDSQTHQASLSKQ,MEPVDPRLEPWKHPGSQPRTACTSCYCKQCCFHCQVCFITKGLGISYGRKKRRQRRRAPPDSQTHQASLSKQ*,ATGGAGCCAGTAGATCCTAGATTAGAGCCCTGGAAGCATCCAGGAAGTCAGCCTAGGACTGCTTGTACCTCTTGTTATTGTAAGCAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAACAAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCCAGACAGTCAGACTCATCAAGCTTCTCTATCAAAGCAGTAA +OQ092464,rev_exon1,5952,6030,5376,5452,forward,0.48200514138817474,MAGRSGDSDEELLQTVRLIKLLYQSS,MAGRSGDSDEELLQTVRLIKLLYQSS,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCCAGACAGTCAGACTCATCAAGCTTCTCTATCAAAGCAGT +OQ092464,vpu,6044,6290,5468,5708,forward,0.4075955491049832,MQPLHIAAIVALVVAIIIAIVVWSIVFIEYRKILRQRKIDRIIDRIRERAEDSGNESEGDQEELSALVEMGHCAPWDVNDL,MQPLHIAAIVALVVAIIIAIVVWSIVFIEYRKILRQRKIDRIIDRIRERAEDSGNESEGDQEELSALVEMGHCAPWDVNDL*,ATGCAACCTTTACACATAGCAGCAATAGTAGCATTAGTAGTAGCAATAATAATAGCAATAGTTGTGTGGTCTATAGTATTCATAGAATATAGGAAAATATTAAGACAAAGGAAAATAGACAGGATAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAGGGGGATCAAGAAGAATTATCAGCACTTGTGGAGATGGGGCATTGTGCTCCTTGGGATGTTAATGATCTGTAG +OQ092464,env,6207,8790,5631,8208,forward,0.4492939666238772,MRVRGIKKNYQHLWRWGIVLLGMLMICSATEKLWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVVLGNVTENFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTNYNNTNNTTSTNDTTSTTTSSGEKMKEGEIKNCSFNITTSIRDKVQKEYALFYKPDIVPIDNDNTSYRLISCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGSCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSENFSDNAKTIIVHLNESVEITCIRPNNNTRKSIPIGPGRAFYATGAIIGDIRQAHCKINKTKWNNTLDQIFKKLREQFGNKTIIFTHSSGGDPEVVTHNFNCGGEFFYCNTTKLFNSTWNETSYWKDERSNDNDTITLPCRIKQIINLWQEVGKAMYAPPIRGYIKCSSNITGLLITRDGGKNESNTTETFRPGGGNMRDNWRSELYKYKVVKIEPLGIAPTKAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASITLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKSLEQIWDNMTWMEWEREIDNYTSLIYTLIEKSQNQQEKNEQELLELDKWASLWNWFDITKWLWYIKIFIMIVGGLVGLRIVFAVLSIANRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSGPLVNGFLTIIWVDLRSLCLFSYHRLRDLLLIVTRIVELLGRRGWELLKYWWNLLQYWSQELKNSAISLLNATAIAVAEGTDRIIEVLQRAGRAFLHIPRRIRQGLERALL,MRVRGIKKNYQHLWRWGIVLLGMLMICSATEKLWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVVLGNVTENFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTNYNNTNNTTSTNDTTSTTTSSGEKMKEGEIKNCSFNITTSIRDKVQKEYALFYKPDIVPIDNDNTSYRLISCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGSCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSENFSDNAKTIIVHLNESVEITCIRPNNNTRKSIPIGPGRAFYATGAIIGDIRQAHCKINKTKWNNTLDQIFKKLREQFGNKTIIFTHSSGGDPEVVTHNFNCGGEFFYCNTTKLFNSTWNETSYWKDERSNDNDTITLPCRIKQIINLWQEVGKAMYAPPIRGYIKCSSNITGLLITRDGGKNESNTTETFRPGGGNMRDNWRSELYKYKVVKIEPLGIAPTKAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASITLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKSLEQIWDNMTWMEWEREIDNYTSLIYTLIEKSQNQQEKNEQELLELDKWASLWNWFDITKWLWYIKIFIMIVGGLVGLRIVFAVLSIANRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSGPLVNGFLTIIWVDLRSLCLFSYHRLRDLLLIVTRIVELLGRRGWELLKYWWNLLQYWSQELKNSAISLLNATAIAVAEGTDRIIEVLQRAGRAFLHIPRRIRQGLERALL*,ATGAGAGTGAGGGGGATCAAGAAGAATTATCAGCACTTGTGGAGATGGGGCATTGTGCTCCTTGGGATGTTAATGATCTGTAGTGCTACAGAAAAATTGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAAAGAAGCAACTACCACTCTATTTTGTGCATCAGATGCTAAAGCATATGATACAGAGGTACATAATGTTTGGGCTACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGTATTGGGAAATGTGACAGAGAATTTTAACATGTGGAAAAATGACATGGTAGAACAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGTCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTGAATTGCACTAATTATAATAACACCAATAATACCACTAGTACCAATGATACCACTAGTACCACTACTAGTAGCGGGGAAAAGATGAAGGAAGGAGAGATAAAAAACTGCTCTTTCAATATCACCACAAGCATAAGAGATAAGGTGCAGAAAGAATATGCACTCTTTTATAAACCTGATATAGTACCAATAGATAATGATAATACTAGTTATAGGTTGATAAGTTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTATTGTGCCCCAGCTGGTTTTGCGATTCTAAAGTGTAACGATAAGAAGTTCAATGGAACAGGATCATGTACAAATGTCAGCACAGTACAATGTACACATGGAATTAGGCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTCTAGCAGAAGAAGAGGTAGTAATTAGATCTGAAAATTTCTCAGACAATGCTAAAACCATAATAGTACATCTGAATGAATCTGTAGAAATTACTTGTATAAGACCCAACAACAATACAAGAAAAAGTATACCTATAGGACCAGGGAGAGCATTTTATGCAACAGGAGCCATAATAGGAGATATAAGACAAGCACATTGTAAAATTAATAAAACGAAATGGAATAACACTTTAGACCAGATATTTAAAAAGTTAAGAGAACAATTTGGGAATAAGACAATAATCTTTACTCACTCCTCAGGAGGGGACCCAGAAGTTGTAACGCACAATTTTAATTGTGGAGGGGAATTTTTCTACTGTAATACAACAAAACTGTTTAATAGTACTTGGAATGAGACTAGTTATTGGAAGGATGAAAGGTCAAATGACAATGACACTATCACACTCCCATGCAGAATAAAGCAAATTATAAACCTGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCATTAGAGGATACATTAAATGTTCATCAAATATCACAGGGCTGCTAATAACAAGAGATGGTGGGAAAAACGAGAGCAACACCACCGAGACCTTCAGACCTGGAGGAGGAAATATGAGGGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAAAATTGAACCATTAGGAATAGCACCCACCAAGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAATAACGCTGACGGTACAGGCCAGACTATTATTGTCTGGTATAGTGCAACAGCAAAACAATCTGCTGAGGGCTATTGAGGCGCAACAGCATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTAAAGGATCAACAGCTCCTGGGAATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCTTGGAATGCTAGTTGGAGTAATAAATCTCTGGAACAGATTTGGGATAACATGACCTGGATGGAATGGGAAAGAGAAATTGACAATTACACAAGCTTAATATACACTTTAATTGAAAAATCGCAAAACCAACAAGAAAAGAATGAACAAGAATTATTGGAATTAGATAAATGGGCAAGTTTGTGGAATTGGTTTGACATAACAAAGTGGCTGTGGTATATAAAAATATTCATAATGATAGTAGGAGGCTTGGTAGGTTTAAGAATAGTTTTTGCTGTACTTTCTATAGCGAATAGAGTTAGGCAGGGATACTCACCATTATCGTTTCAGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCAGAAGGAATCGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGGACCATTAGTGAACGGATTCTTAACAATTATCTGGGTCGACCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAACTCCTCAAATATTGGTGGAATCTCCTGCAGTATTGGAGTCAGGAACTAAAGAATAGTGCTATTAGCTTGCTTAATGCCACAGCCATAGCAGTAGCTGAGGGGACAGATAGGATTATAGAAGTATTACAAAGAGCTGGGAGAGCTTTTCTCCACATACCTAGAAGAATAAGACAGGGCTTAGAAAGGGCTTTGCTATAA +OQ092464,tat_exon2,8371,8467,7789,7882,forward,0.8495145631067962,RPTSQPRGDPTGQKESKKKVERETETDPDH,RPTSQPRGDPTGQKESKKKVERETETDPDH**,AGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCAGAAGGAATCGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGGACCATTAGTGA +OQ092464,rev_exon2,8372,8648,7790,8066,forward,0.38284839203675347,DPPPSPEGTRQARRNRRRRWRERQRQIRTISERILNNYLGRPAEPVPLQLPPLERLTLDCNEDCGTSGTQGVGTPQILVESPAVLESGTKE,DPPPSPEGTRQARRNRRRRWRERQRQIRTISERILNNYLGRPAEPVPLQLPPLERLTLDCNEDCGTSGTQGVGTPQILVESPAVLESGTKE*,GACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCAGAAGGAATCGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGGACCATTAGTGAACGGATTCTTAACAATTATCTGGGTCGACCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAACTCCTCAAATATTGGTGGAATCTCCTGCAGTATTGGAGTCAGGAACTAAAGAATAG +OQ092464,nef,8791,9412,8209,8842,forward,0.36363636363636354,MGGKWSKSSVVGWPAIRERMRRAEPAADGVGAASRDLEKHGAITSSNTAATNADCAWLEAQEDEEVGFPVRPQVPLRPMTYKGAVDLSHFLKEKGGLEGLIHSQKRQDILDLWVYHTQGYFPDWQNYTPGPGIRYPLTFGWCFKLVPVEPDKVEEANEGENNSLLHPMSLHGMDDPEKEVLVWRFDSRLAFHHMARELHPEYYKDC,MGGKWSKSSVVGWPAIRERMRRAEPAADGVGAASRDLEKHGAITSSNTAATNADCAWLEAQEDEEVGFPVRPQVPLRPMTYKGAVDLSHFLKEKGGLEGLIHSQKRQDILDLWVYHTQGYFPDWQNYTPGPGIRYPLTFGWCFKLVPVEPDKVEEANEGENNSLLHPMSLHGMDDPEKEVLVWRFDSRLAFHHMARELHPEYYKDC*,ATGGGTGGTAAGTGGTCAAAGAGTAGTGTGGTTGGATGGCCTGCTATAAGGGAAAGAATGAGACGAGCTGAGCCAGCAGCAGATGGGGTGGGAGCAGCATCTCGAGACCTGGAAAAACATGGAGCAATCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGTGCCTGGCTAGAAGCACAAGAGGATGAGGAGGTGGGTTTTCCAGTCAGGCCTCAGGTACCTTTAAGACCAATGACTTACAAGGGAGCTGTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCACTCCCAAAAAAGACAAGATATCCTTGATCTGTGGGTCTACCACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGATCAGGTATCCACTGACCTTTGGATGGTGCTTCAAGCTAGTACCAGTTGAGCCAGATAAGGTAGAAGAGGCCAATGAAGGAGAGAACAACAGCTTGTTACACCCTATGAGCCTGCATGGGATGGATGACCCAGAGAAAGAAGTGTTAGTATGGAGGTTTGACAGTCGCCTGGCATTTCATCACATGGCCCGAGAGCTGCATCCGGAGTACTACAAGGACTGCTGA +OQ092467,gag,808,2308,789,2292,forward,0.2822412595508219,MGARASVLSGGELDKWEKIRLRPGGKKQYKLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPALQTGSEEFRSLYNTVATLYCVHQKIEVKDTKEALEKIEEEQNQSKKKAAAAAADTGNRSQVSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVIEEKAFSPEVIPMFTALSEGATPQDLNTMLNTIGGHQAAMQMLKETINEEAAEWDRLHPVQAGPVAPGQMREPRGSDIAGTTSNLQEQIGWMTHNPPIPVGDIYKRWIILGLNKIVRMYSPVSILDIKQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSTVMMQRGNFRNQRKTVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSKPEPTAPPEESFRFGEETTTPSQKQGPIDKELYPLASLKSLFGNDPSSQ,MGARASVLSGGELDKWEKIRLRPGGKKQYKLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPALQTGSEEFRSLYNTVATLYCVHQKIEVKDTKEALEKIEEEQNQSKKKAAAAAADTGNRSQVSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVIEEKAFSPEVIPMFTALSEGATPQDLNTMLNTIGGHQAAMQMLKETINEEAAEWDRLHPVQAGPVAPGQMREPRGSDIAGTTSNLQEQIGWMTHNPPIPVGDIYKRWIILGLNKIVRMYSPVSILDIKQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSTVMMQRGNFRNQRKTVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSKPEPTAPPEESFRFGEETTTPSQKQGPIDKELYPLASLKSLFGNDPSSQ*,ATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAGAATTAGATAAATGGGAAAAAATTCGGTTAAGGCCAGGAGGAAAAAAACAATACAAATTAAAACATCTAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTTAATCCTGGCCTTCTAGAGACATCAGAAGGGTGTAGACAAATACTGGGACAGCTACAACCAGCTCTTCAGACAGGATCAGAAGAATTTAGATCATTATATAATACAGTAGCAACCCTCTATTGTGTGCATCAAAAGATAGAGGTAAAAGACACCAAGGAAGCTTTAGAGAAAATAGAGGAAGAGCAAAACCAAAGTAAGAAAAAAGCAGCAGCTGCAGCAGCTGACACAGGAAACAGAAGCCAGGTCAGCCAAAATTACCCTATAGTGCAGAACCTCCAGGGGCAAATGGTACATCAGCCTTTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAATAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTACAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAATAGGTGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATTAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCAGGCAGGGCCTGTTGCACCAGGCCAAATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTAACCTTCAGGAACAAATAGGATGGATGACACATAATCCACCTATCCCAGTAGGAGATATCTATAAAAGATGGATAATTCTGGGGTTAAATAAAATAGTAAGAATGTATAGCCCTGTCAGTATTCTGGATATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAAAACTCTGAGAGCCGAGCAAGCAACACAGGAAGTAAAGAATTGGATGACAGAAACTTTGCTGGTCCAAAATGCAAATCCAGATTGTAAGACTATTTTAAAAGCATTAGGACCAGCAGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGGGGACCAGGCCACAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAACAAATTCAACTGTAATGATGCAGAGAGGCAATTTTAGGAATCAAAGAAAGACAGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCATATAGCAAGAAATTGCAGGGCCCCTAGAAAAAAGGGCTGTTGGAAATGTGGAAAAGAAGGGCACCAAATGAAAGATTGTACTGAGAGACAGGCTAATTTTTTAGGGAAGATCTGGCCTTCCCACAAGGGGAGGCCAGGGAATTTTCTTCAGAGCAAACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAACAACTCCCTCTCAGAAGCAGGGGCCGATAGACAAGGAACTGTATCCTTTAGCTTCCCTCAAATCACTCTTTGGCAACGACCCCTCGTCACAATAA +OQ092467,pol,2100,5112,2084,5096,forward,0.1880239208210378,FFREDLAFPQGEAREFSSEQTRANSPTRRELQVWGRDNNSLSEAGADRQGTVSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMNLPGKWKPKMIGGIGGFIKVRQYDQILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTRILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLKWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIKLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTAEAELELAENREILKEPVHGVYYDPTKDLIAELQKQGQSQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIAIESIVIWGKTPKFKLPIQKETWETWWTDYWQATWIPDWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETRSGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSSGIRKILFLDGITKAQDDHERYHSNWRAMASDFNLPPIIAKEIVASCDKCQLKGEATHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSAAVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVREQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED,FFREDLAFPQGEAREFSSEQTRANSPTRRELQVWGRDNNSLSEAGADRQGTVSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMNLPGKWKPKMIGGIGGFIKVRQYDQILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTRILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLKWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIKLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTAEAELELAENREILKEPVHGVYYDPTKDLIAELQKQGQSQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIAIESIVIWGKTPKFKLPIQKETWETWWTDYWQATWIPDWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETRSGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSSGIRKILFLDGITKAQDDHERYHSNWRAMASDFNLPPIIAKEIVASCDKCQLKGEATHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSAAVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVREQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAGATCTGGCCTTCCCACAAGGGGAGGCCAGGGAATTTTCTTCAGAGCAAACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAACAACTCCCTCTCAGAAGCAGGGGCCGATAGACAAGGAACTGTATCCTTTAGCTTCCCTCAAATCACTCTTTGGCAACGACCCCTCGTCACAATAAAAATAGGGGGGCAGCTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGATATGAATTTACCAGGAAAATGGAAACCAAAAATGATAGGAGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACTCGTAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGATTGGCTGTACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGATAGTACTAAATGGAGAAAGTTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCGCATCCTGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTAGATGTGGGTGATGCCTATTTTTCAATTCCCTTAGATAAAGACTTCAGGAAGTACACTGCATTTACCATACCTAGTACAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAGGATATTAGAACCTTTTAGAAAACAAAATCCAGACATAGTTATCTATCAATACATGGATGATTTGTATGTGGGATCTGACTTAGAAATAGGACAGCATAGAACAAAAATAGAGGAACTGAGACAACATCTGTTGAAGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAAAGCTGCCAGAAAAAGATAGCTGGACTGTCAATGACATCCAGAAGTTAGTGGGAAAATTGAATTGGGCAAGTCAGATTTATGCAGGAATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACTAAAGCACTAACAGAAGTAGTACCACTAACAGCAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAGATTCTAAAAGAACCGGTACATGGAGTGTATTATGACCCAACGAAAGACCTAATAGCAGAACTACAGAAGCAGGGGCAAAGTCAATGGACATATCAAATTTATCAAGAACCATTTAAAAATCTGAAAACAGGAAAGTATGCAAGAATGAGGGGTGCCCACACTAATGATGTGAAACAATTAACAGAGGCAGTGCAAAAAATAGCCATAGAAAGCATAGTAATATGGGGAAAGACCCCTAAATTTAAATTACCTATACAAAAAGAAACATGGGAAACATGGTGGACAGACTATTGGCAAGCCACCTGGATTCCTGATTGGGAGTTTGTCAATACCCCTCCCTTAGTAAAATTATGGTACCAGTTAGAAAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACTAGATCAGGCAAAGCAGGATATGTTACTGATAGAGGAAGACAAAAGGTTGTCCCCCTAACAGACACAACAAACCAGAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCAGGATTAGAAGTAAACATAGTGACAGACTCACAATATGCACTAGGAATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAGTCAAATAATAGAGCAGTTAATAAAGAAGGAAAAGGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTTCTGGAATCAGGAAGATACTATTTTTAGATGGAATAACTAAGGCCCAAGATGATCATGAGAGATACCACAGCAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTATAATAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGAGAAGCCACGCATGGACAAGTAGACTGCAGTCCAGGAATATGGCAACTAGATTGTACGCATTTAGAAGGAAAAATTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAAGAAACAGCATACTTTCTCTTAAAACTAGCAGGAAGATGGCCAGTAAAGACAGTACATACAGATAATGGCAGCAATTTCACCAGTGCTGCGGTTAAGGCCGCCTGTTGGTGGGCGGGGATCAAGCAGGAATTTGGTATTCCCTACAATCCCCAAAGTCAAGGAGTCATAGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAAGTAAGAGAGCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAATAGACATAATAGCAACAGACATACAAACTAAAGAATTACAGAAACAAATCACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGACCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGACATAAAAGTAGTGCCAAGAAGAAAGGCAAAGATCATTAGAGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG +OQ092467,vif,5056,5644,5040,5619,forward,0.41080974064541675,MENRWQVMIVWQVDRMRIRTWNSLVKHHIHVSKKAKGWVYRHHYESTHPRISSEVHIPLGEARLVIATYWGLHTGERDWHLGQGVSIEWREKKYITQVDPDLADQLIHLHYFDCFSESAIRNAIVGRLVSPQCEYQTGHNKVGSLQYLALVALITPKKRKPPLPSVRKLTEDRWNKPQKTKDHRGSHIMSGH,MENRWQVMIVWQVDRMRIRTWNSLVKHHIHVSKKAKGWVYRHHYESTHPRISSEVHIPLGEARLVIATYWGLHTGERDWHLGQGVSIEWREKKYITQVDPDLADQLIHLHYFDCFSESAIRNAIVGRLVSPQCEYQTGHNKVGSLQYLALVALITPKKRKPPLPSVRKLTEDRWNKPQKTKDHRGSHIMSGH*SF*,ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATACATGTCTCAAAGAAAGCTAAGGGATGGGTTTATAGACACCACTATGAAAGCACCCATCCAAGAATAAGTTCAGAAGTACATATCCCGCTAGGGGAAGCTAGATTAGTAATAGCAACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCACTTGGGTCAGGGAGTCTCCATAGAATGGAGGGAAAAGAAATATATCACACAAGTAGACCCTGACCTAGCAGACCAACTAATTCATCTGCATTATTTTGATTGTTTTTCAGAGTCTGCTATAAGAAATGCCATAGTAGGACGTTTAGTTAGCCCTCAGTGTGAATATCAAACAGGACATAACAAGGTAGGATCTCTACAGTACTTGGCACTAGTAGCATTAATAACGCCAAAAAAGAGAAAGCCACCTTTGCCTAGTGTTAGGAAATTGACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGACCACAGAGGGAGCCATATAATGAGTGGACACTAGAGCTTTTAG +OQ092467,vpr,5574,5868,5558,5850,forward,0.43675751222921066,MEQAPEDQGPQREPYNEWTLELLEELKSEAVRHFPRIWLHNLGQYIYATYGDTWTGVEALIRILQQLLFIHFRIGCQHSRIGITRQRRARNGASRS,MEQAPEDQGPQREPYNEWTLELLEELKSEAVRHFPRIWLHNLGQYIYATYGDTWTGVEALIRILQQLLFIHFRIGCQHSRIGITRQRRARNGASRS*T,ATGGAACAAGCCCCAGAAGACCAAGGACCACAGAGGGAGCCATATAATGAGTGGACACTAGAGCTTTTAGAGGAACTTAAGAGTGAAGCTGTTAGACATTTTCCTAGGATATGGCTCCATAACTTAGGACAATACATCTATGCAACTTATGGGGATACTTGGACAGGAGTGGAAGCTTTAATAAGAATTCTGCAACAACTGCTGTTTATTCATTTCAGAATTGGATGTCAACATAGCAGAATAGGCATTACTCGACAGAGGAGAGCAAGGAATGGAGCCAGTAGATCCTAGACT +OQ092467,tat_exon1,5845,6064,5830,6045,forward,0.31992687385740404,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRPPQNSETHQAALSKQ,MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRPPQNSETHQAALSKQ*,ATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCATCCAGGAAGTCAGCCTAAGACTCCTTGTACCAATTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTCTGTTTCATAAAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGACCTCCTCAAAACAGTGAGACTCATCAAGCAGCTCTATCAAAGCAGTAA +OQ092467,rev_exon1,5984,6065,5969,6045,forward,0.5058246474555488,MAGRSGDSDEDLLKTVRLIKQLYQSSK,MAGRSGDSDEDLLKTVRLIKQLYQSSK,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGACCTCCTCAAAACAGTGAGACTCATCAAGCAGCTCTATCAAAGCAGTAAG +OQ092467,vpu,6076,6340,6061,6310,forward,0.4673093042749372,MQPLVILAIVALVVAAIIAIVVWTIVLIEYRKILRQRKIDSIINRIRERAEDSGNESEGDQEELSALVEMGHHVEMGHHAPWNVDDL,MQPLVILAIVALVVAAIIAIVVWTIVLIEYRKILRQRKIDSIINRIRERAEDSGNESEGDQEELSALVEMGHHVEMGHHAPWNVDDL*,ATGCAACCCTTAGTAATATTAGCAATAGTAGCATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGACCATAGTGTTAATAGAATATAGGAAAATATTAAGACAAAGAAAGATAGATAGCATAATTAATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGAGATCAGGAAGAATTGTCGGCACTTGTGGAGATGGGGCACCATGTGGAAATGGGGCACCATGCTCCTTGGAATGTTGATGATCTGTAG +OQ092467,env,6239,8807,6224,8795,forward,0.44637082472721223,MRVKEIRKNCRHLWRWGTMWKWGTMLLGMLMICSAKEQLWVTVYYGVPVWKEATTTLFCASNAKAYDPEVHNVWATHACVPTDPNPQEVPLENVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVILNCTNVNVTTNNNSSSEEQMEVGEIKNCSFNIATRIKNKIKKEYALFNRLDVVPIEDDNTSYMLINCNTSVTTQACPKVTFEPIPIHYCAPAGFAILKCNDKKFNGTGPCNNVSTVQCTHGIKPVVSTQLLLNGSLAEEEIVVRSENFTNNAKTIIVQLNKTIEINCIRPNNNTRKSISLRPGQAIYATEDIIGNIRQAHCNIRRKDWDKALEQVVAKLREQFKNKTIVFNQSSGGDPEIVMHSFNCAGEFFYCNTTKLFNSTWNVNNTRNNTTDNSTITLPCRIKQIINRWQEVGKAMYAPPIKGQIKCSSNITGLLLTRDGGVREDNAPEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQRGKRAVTLGAMFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLRAIEAQQHMLQLTVWGIKQLQARVLAVERYLQDQQLLGIWGCSGKLICTTAVPWNTSWSNKSLEKIWKNMTWMEWEKEINNYTRTIYTLIEESQNQQEKNEQELLELDKWASLWNWFDITNWLWYIKIFIMIVGGIVGLRIVFTVLSIVNRVRQGYSPLSFQTRFPAPRGPDRPEGTEEEGGERDRDRSGQLVNGFFALIWDDLQSLCLFSYRRLRDLLLIVARIVELLGHRGWEALKYWWNLLQYWSQELKKSAVSLLNATAIAVAEGTDRVIEVVQRIGRAILHIPRRIRQGLERALL,MRVKEIRKNCRHLWRWGTMWKWGTMLLGMLMICSAKEQLWVTVYYGVPVWKEATTTLFCASNAKAYDPEVHNVWATHACVPTDPNPQEVPLENVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVILNCTNVNVTTNNNSSSEEQMEVGEIKNCSFNIATRIKNKIKKEYALFNRLDVVPIEDDNTSYMLINCNTSVTTQACPKVTFEPIPIHYCAPAGFAILKCNDKKFNGTGPCNNVSTVQCTHGIKPVVSTQLLLNGSLAEEEIVVRSENFTNNAKTIIVQLNKTIEINCIRPNNNTRKSISLRPGQAIYATEDIIGNIRQAHCNIRRKDWDKALEQVVAKLREQFKNKTIVFNQSSGGDPEIVMHSFNCAGEFFYCNTTKLFNSTWNVNNTRNNTTDNSTITLPCRIKQIINRWQEVGKAMYAPPIKGQIKCSSNITGLLLTRDGGVREDNAPEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQRGKRAVTLGAMFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLRAIEAQQHMLQLTVWGIKQLQARVLAVERYLQDQQLLGIWGCSGKLICTTAVPWNTSWSNKSLEKIWKNMTWMEWEKEINNYTRTIYTLIEESQNQQEKNEQELLELDKWASLWNWFDITNWLWYIKIFIMIVGGIVGLRIVFTVLSIVNRVRQGYSPLSFQTRFPAPRGPDRPEGTEEEGGERDRDRSGQLVNGFFALIWDDLQSLCLFSYRRLRDLLLIVARIVELLGHRGWEALKYWWNLLQYWSQELKKSAVSLLNATAIAVAEGTDRVIEVVQRIGRAILHIPRRIRQGLERALL*,ATGAGAGTGAAGGAGATCAGGAAGAATTGTCGGCACTTGTGGAGATGGGGCACCATGTGGAAATGGGGCACCATGCTCCTTGGAATGTTGATGATCTGTAGTGCTAAAGAACAATTGTGGGTCACAGTTTATTATGGGGTACCTGTGTGGAAAGAAGCAACCACCACTTTATTTTGTGCATCAAATGCTAAAGCATATGACCCAGAGGTGCATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCTAACCCACAAGAAGTACCATTGGAAAATGTGACAGAAAATTTTAATATGTGGAAAAATAACATGGTAGAACAGATGCATGAGGACATAATCAGTTTATGGGATCAAAGCTTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTATTTTAAATTGCACTAATGTGAATGTTACTACTAACAATAATAGTAGTAGTGAGGAACAGATGGAGGTAGGAGAAATAAAAAACTGCTCTTTCAATATTGCCACAAGAATAAAAAATAAGATAAAGAAAGAATATGCACTTTTTAATAGACTTGATGTAGTACCAATAGAGGATGATAATACAAGCTATATGTTGATAAATTGTAATACCTCAGTCACTACACAGGCCTGTCCAAAGGTAACCTTTGAACCAATTCCCATACATTATTGTGCCCCGGCTGGTTTTGCGATACTAAAATGTAATGATAAAAAGTTCAATGGAACAGGACCATGTAACAATGTCAGCACAGTACAATGTACACATGGAATTAAGCCAGTAGTGTCAACTCAACTGCTGTTAAATGGTAGTCTAGCAGAAGAAGAGATAGTAGTTAGATCTGAAAATTTCACGAACAATGCTAAAACCATAATAGTACAGCTGAATAAAACTATAGAAATTAATTGTATAAGACCCAACAATAATACAAGAAAAAGTATATCTTTAAGACCGGGGCAAGCAATTTATGCAACAGAAGACATAATAGGAAATATAAGACAAGCACATTGTAACATTAGGAGAAAAGACTGGGATAAAGCTTTAGAACAGGTAGTTGCAAAATTAAGAGAACAATTTAAGAATAAAACAATAGTCTTTAATCAATCCTCAGGAGGAGACCCAGAAATTGTAATGCATAGTTTTAATTGTGCAGGGGAATTTTTCTACTGTAACACAACAAAGCTGTTTAATAGTACTTGGAATGTTAATAACACTCGGAATAATACTACTGATAATAGCACCATCACTCTCCCGTGCAGAATAAAACAAATTATAAACAGATGGCAGGAAGTAGGAAAAGCAATGTATGCTCCTCCCATCAAAGGGCAAATTAAATGTTCATCAAATATTACAGGGTTATTATTAACAAGAGATGGTGGTGTCCGCGAGGACAACGCCCCTGAGATCTTTAGACCTGGAGGAGGAGATATGAGGGATAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAAAATTGAGCCATTAGGAGTGGCACCCACCAAGGCAAAGAGAAGAGTGGTGCAAAGAGGAAAAAGAGCAGTAACGCTGGGAGCTATGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAATGACGCTGACGGTACAGGCCAGGCAATTATTGTCTGGTATAGTGCAGCAGCAGAACAATCTGCTGAGGGCTATTGAGGCGCAACAGCATATGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACTTACAGGATCAACAGCTCCTAGGGATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTACCTTGGAATACTAGTTGGAGTAATAAATCTTTGGAAAAGATTTGGAAAAACATGACCTGGATGGAGTGGGAGAAAGAAATTAACAATTACACAAGGACAATATACACCTTAATTGAAGAATCGCAAAACCAGCAAGAAAAGAATGAACAGGAATTATTGGAATTGGATAAGTGGGCAAGTTTGTGGAATTGGTTTGACATAACAAACTGGCTGTGGTATATAAAAATATTCATCATGATAGTAGGAGGTATAGTAGGGTTAAGAATAGTTTTTACTGTGCTTTCTATAGTGAATAGAGTTAGGCAGGGATATTCACCATTGTCATTCCAGACCCGCTTCCCAGCTCCGAGGGGACCAGACAGGCCCGAAGGAACAGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGGGCAATTAGTGAACGGATTCTTTGCGCTTATCTGGGACGACCTGCAGAGCCTGTGCCTCTTCAGCTACCGCCGCTTGAGAGACTTACTCTTGATTGTAGCGAGGATTGTGGAACTTCTGGGACACAGGGGGTGGGAGGCCCTCAAATATTGGTGGAATCTCCTGCAGTACTGGAGTCAGGAACTAAAGAAGAGTGCTGTTAGTTTGCTTAATGCCACAGCTATAGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAAGAATTGGTAGAGCTATTCTCCACATCCCTAGAAGAATAAGACAGGGCTTAGAAAGGGCTTTGCTATAA +OQ092467,tat_exon2,8388,8484,8376,8469,forward,0.5884955752212387,RPASQLRGDQTGPKEQKKKVERETETDPGN,RPASQLRGDQTGPKEQKKKVERETETDPGN**,AGACCCGCTTCCCAGCTCCGAGGGGACCAGACAGGCCCGAAGGAACAGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGGGCAATTAGTGA +OQ092467,rev_exon2,8389,8674,8377,8653,forward,0.3821725799386769,DPLPSSEGTRQARRNRRRRWRERQRQIRAISERILCAYLGRPAEPVPLQLPPLERLTLDCSEDCGTSGTQGVGGPQILVESPAVLESGTKEECC,DPLPSSEGTRQARRNRRRRWRERQRQIRAISERILCAYLGRPAEPVPLQLPPLERLTLDCSEDCGTSGTQGVGGPQILVESPAVLESGTKEECC*,GACCCGCTTCCCAGCTCCGAGGGGACCAGACAGGCCCGAAGGAACAGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGGGCAATTAGTGAACGGATTCTTTGCGCTTATCTGGGACGACCTGCAGAGCCTGTGCCTCTTCAGCTACCGCCGCTTGAGAGACTTACTCTTGATTGTAGCGAGGATTGTGGAACTTCTGGGACACAGGGGGTGGGAGGCCCTCAAATATTGGTGGAATCTCCTGCAGTACTGGAGTCAGGAACTAAAGAAGAGTGCTGTTAG +OQ092467,nef,8808,9417,8796,9417,forward,0.49382716049382436,MGGKWSKCSLVGWPAIRERMRRAEPAPAAEGVGAASRDLEKHGALTTSNTAANNAACAWLEAQEEEEVGFPVRPQVPLRPMTYKGAMDLGHFLKEKGGLEGLIYSPKRQEILDLWVYHTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPDEGENSCLLHPMNQHGADDTEREVLMWKFDSSLAFHHKARELHPEYYKNC,MGGKWSKCSLVGWPAIRERMRRAEPAPAAEGVGAASRDLEKHGALTTSNTAANNAACAWLEAQEEEEVGFPVRPQVPLRPMTYKGAMDLGHFLKEKGGLEGLIYSPKRQEILDLWVYHTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPDEGENSCLLHPMNQHGADDTEREVLMWKFDSSLAFHHKARELHPEYYKNC*,ATGGGTGGCAAGTGGTCAAAATGTAGTCTGGTTGGATGGCCTGCTATAAGGGAAAGAATGAGACGAGCTGAGCCAGCTCCAGCAGCAGAAGGGGTGGGAGCAGCATCTCGAGACTTGGAAAAACATGGAGCACTCACAACTAGTAATACAGCAGCTAATAATGCTGCTTGTGCCTGGCTGGAAGCACAAGAGGAGGAAGAGGTGGGGTTTCCAGTCAGACCTCAGGTACCTTTAAGACCAATGACTTACAAAGGAGCTATGGATCTTGGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCCCCAAAAAGACAAGAAATCCTTGATCTGTGGGTCTACCACACACAAGGCTACTTCCCTGATTGGCAGAACTATACACCAGGGCCAGGGACTAGATATCCATTAACCTTTGGATGGTGCTTCAAGCTAGTACCAGTTGAGCCAGATGAAGGAGAGAATAGCTGTTTGCTACACCCGATGAACCAGCATGGGGCAGATGACACAGAAAGAGAAGTATTAATGTGGAAGTTTGACAGCAGCCTAGCATTTCATCACAAGGCCCGAGAGCTGCATCCGGAGTACTACAAAAACTGCTGA diff --git a/tests/expected-results-large/orfs.json b/tests/expected-results-large/orfs.json index 661921e..6e1d0ff 100644 --- a/tests/expected-results-large/orfs.json +++ b/tests/expected-results-large/orfs.json @@ -7,7 +7,7 @@ "subtype_start": 6224, "subtype_end": 8795, "orientation": "forward", - "distance": 1.9898364485981306, + "distance": 0.7624372207948004, "protein": "MGARASVLSGGELDRWEKIRLRPGGNKRYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPTLKTGSEELKSLYNTIAVLYCVHQKIDVKDTKEALDKIEEEQNKIRKQAQQTAAAGSSSQVSHNYPVVQNHQGQMVYQALSPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPSHKARVLAEAMSQMTNSATVMMQKGNFRNQRKTVKCFNCGKEGHIARNCRAPRKKGCWKCGREGHQMKDCTERQANFVGKIWPSHKGRPGNFLQNRPEPTAPPAESFRFGEETPTRCIRSTTRTADTELFTRDFPLGTFQ", "aminoacids": "GLSG*TRSEPGSSLAN*GTHCLSLNKACLECFK*CVPVCCVTLVTRDPSDPFSQCGKSLAVAPEQGPESERETRGALSTQDSAC*ARAARGEGRRLVSTPKIF*LAEARRREMGARASVLSGGELDRWEKIRLRPGGNKRYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPTLKTGSEELKSLYNTIAVLYCVHQKIDVKDTKEALDKIEEEQNKIRKQAQQTAAAGSSSQVSHNYPVVQNHQGQMVYQALSPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPSHKARVLAEAMSQMTNSATVMMQKGNFRNQRKTVKCFNCGKEGHIARNCRAPRKKGCWKCGREGHQMKDCTERQANFVGKIWPSHKGRPGNFLQNRPEPTAPPAESFRFGEETPTRCIRSTTRTADTELFTRDFPLGTFQ*", "nucleotides": "GGTCTCTCTGGTTAGACCAGATCTGAGCCTGGGAGCTCTCTGGCTAACTAGGGAACCCACTGCTTAAGCCTCAATAAAGCTTGCCTTGAGTGCTTCAAGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGGTAACTAGAGATCCCTCAGACCCTTTTAGTCAGTGTGGAAAATCTCTAGCAGTGGCGCCCGAACAGGGACCTGAAAGCGAAAGGGAAACCAGAGGAGCTCTCTCGACGCAGGACTCGGCTTGCTGAGCGCGCGCAGCAAGAGGCGAGGGGCGGCGACTGGTGAGTACGCCGAAAATTTTTTGACTAGCGGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAGAATTGGATAGATGGGAAAAAATTCGGCTAAGGCCAGGAGGAAATAAAAGATATAAACTAAAACATATAGTATGGGCAAGCAGAGAGCTAGAACGATTCGCAGTTAATCCTGGCCTGCTAGAAACATCAGAAGGCTGTAGACAAATACTGGGACAGCTACAACCGACTCTTAAGACAGGATCAGAAGAACTTAAGTCTTTGTATAATACAATAGCAGTCCTCTATTGTGTACATCAAAAAATAGATGTGAAAGACACCAAGGAAGCCTTAGACAAGATAGAAGAAGAGCAAAACAAAATTAGGAAACAAGCACAGCAAACCGCAGCTGCAGGAAGTAGCAGTCAGGTCAGCCACAATTACCCTGTAGTGCAGAATCATCAGGGGCAAATGGTATATCAGGCCCTGTCACCAAGAACTTTAAATGCATGGGTAAAAGTAATAGAGGAAAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGACTTAAACACCATGCTAAATACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATTAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGATGACAAATAATCCACCTATCCCAGTAGGAGAGATTTATAAAAGATGGATAATCCTAGGGTTAAATAAAATAGTAAGAATGTATAGCCCTGTCAGCATTCTGGACATAAGACAAGGACCAAAGGAACCTTTTAGAGACTATGTAGACCGGTTCTATAAAACCCTAAGAGCCGAACAAGCCACACAGGAAGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAGAATGCGAACCCAGATTGTAAAACTATTTTAAAAGCATTAGGACCAGCAGCCACACTAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCCAGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAATGACAAATTCAGCTACAGTAATGATGCAGAAAGGCAATTTTAGGAACCAAAGAAAAACTGTTAAGTGCTTCAATTGTGGCAAAGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGAAAAAAGGGCTGTTGGAAATGTGGAAGGGAAGGACATCAAATGAAAGACTGTACTGAGAGACAGGCTAATTTTGTAGGGAAAATCTGGCCTTCCCACAAGGGAAGGCCGGGGAATTTCCTTCAGAACAGACCAGAGCCAACAGCCCCACCAGCAGAGAGCTTCAGGTTTGGGGAAGAGACACCAACTAGATGCATCCGGAGTACTACAAGGACTGCTGACACTGAGCTTTTCACAAGGGACTTTCCGCTGGGGACTTTCCAGTAG" @@ -19,7 +19,7 @@ "subtype_start": 789, "subtype_end": 2292, "orientation": "forward", - "distance": 0.3622000000000025, + "distance": 0.3687639991855035, "protein": "MGARASVLSGGELDRWEKIRLRPGGNKRYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPTLKTGSEELKSLYNTIAVLYCVHQKIDVKDTKEALDKIEEEQNKIRKQAQQTAAAGSSSQVSHNYPVVQNHQGQMVYQALSPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPSHKARVLAEAMSQMTNSATVMMQKGNFRNQRKTVKCFNCGKEGHIARNCRAPRKKGCWKCGREGHQMKDCTERQANFVGKIWPSHKGRPGNFLQNRPEPTAPPAESFRFGEETPTRCIRSTTRTADTELFTRDFPLGTFQ", "aminoacids": "MGARASVLSGGELDRWEKIRLRPGGNKRYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPTLKTGSEELKSLYNTIAVLYCVHQKIDVKDTKEALDKIEEEQNKIRKQAQQTAAAGSSSQVSHNYPVVQNHQGQMVYQALSPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPSHKARVLAEAMSQMTNSATVMMQKGNFRNQRKTVKCFNCGKEGHIARNCRAPRKKGCWKCGREGHQMKDCTERQANFVGKIWPSHKGRPGNFLQNRPEPTAPPAESFRFGEETPTRCIRSTTRTADTELFTRDFPLGTFQ*", "nucleotides": "ATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAGAATTGGATAGATGGGAAAAAATTCGGCTAAGGCCAGGAGGAAATAAAAGATATAAACTAAAACATATAGTATGGGCAAGCAGAGAGCTAGAACGATTCGCAGTTAATCCTGGCCTGCTAGAAACATCAGAAGGCTGTAGACAAATACTGGGACAGCTACAACCGACTCTTAAGACAGGATCAGAAGAACTTAAGTCTTTGTATAATACAATAGCAGTCCTCTATTGTGTACATCAAAAAATAGATGTGAAAGACACCAAGGAAGCCTTAGACAAGATAGAAGAAGAGCAAAACAAAATTAGGAAACAAGCACAGCAAACCGCAGCTGCAGGAAGTAGCAGTCAGGTCAGCCACAATTACCCTGTAGTGCAGAATCATCAGGGGCAAATGGTATATCAGGCCCTGTCACCAAGAACTTTAAATGCATGGGTAAAAGTAATAGAGGAAAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGACTTAAACACCATGCTAAATACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATTAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGATGACAAATAATCCACCTATCCCAGTAGGAGAGATTTATAAAAGATGGATAATCCTAGGGTTAAATAAAATAGTAAGAATGTATAGCCCTGTCAGCATTCTGGACATAAGACAAGGACCAAAGGAACCTTTTAGAGACTATGTAGACCGGTTCTATAAAACCCTAAGAGCCGAACAAGCCACACAGGAAGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAGAATGCGAACCCAGATTGTAAAACTATTTTAAAAGCATTAGGACCAGCAGCCACACTAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCCAGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAATGACAAATTCAGCTACAGTAATGATGCAGAAAGGCAATTTTAGGAACCAAAGAAAAACTGTTAAGTGCTTCAATTGTGGCAAAGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGAAAAAAGGGCTGTTGGAAATGTGGAAGGGAAGGACATCAAATGAAAGACTGTACTGAGAGACAGGCTAATTTTGTAGGGAAAATCTGGCCTTCCCACAAGGGAAGGCCGGGGAATTTCCTTCAGAACAGACCAGAGCCAACAGCCCCACCAGCAGAGAGCTTCAGGTTTGGGGAAGAGACACCAACTAGATGCATCCGGAGTACTACAAGGACTGCTGACACTGAGCTTTTCACAAGGGACTTTCCGCTGGGGACTTTCCAGTAG" @@ -31,7 +31,7 @@ "subtype_start": 5040, "subtype_end": 5619, "orientation": "forward", - "distance": 2.1463541666666663, + "distance": 0.7758782995067214, "protein": "MRTQIVKLF", "aminoacids": "MRTQIVKLF*KH*DQQPH*KK**QHAREWEDPAIKQEFWLKQ*AK*QIQLQ**CRKAILGTKEKLLSASIVAKKGT*PEIAGPLEKRAVGNVEGKDIK*KTVLRDRLIL*GKSGLPTREGRGISFRTDQSQQPHQQRASGLGKRHQLDASGVLQGLLTLSFSQGTFRWGLSSRGVAWAGLGSGEPSDAAYKQLLSACTRSLWLDQI*", "nucleotides": "ATGCGAACCCAGATTGTAAAACTATTTTAAAAGCATTAGGACCAGCAGCCACACTAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCCAGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAATGACAAATTCAGCTACAGTAATGATGCAGAAAGGCAATTTTAGGAACCAAAGAAAAACTGTTAAGTGCTTCAATTGTGGCAAAGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGAAAAAAGGGCTGTTGGAAATGTGGAAGGGAAGGACATCAAATGAAAGACTGTACTGAGAGACAGGCTAATTTTGTAGGGAAAATCTGGCCTTCCCACAAGGGAAGGCCGGGGAATTTCCTTCAGAACAGACCAGAGCCAACAGCCCCACCAGCAGAGAGCTTCAGGTTTGGGGAAGAGACACCAACTAGATGCATCCGGAGTACTACAAGGACTGCTGACACTGAGCTTTTCACAAGGGACTTTCCGCTGGGGACTTTCCAGTAGGGGCGTGGCCTGGGCGGGACTGGGGAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTCTGCCTGTACGAGGTCTCTCTGGTTAGACCAGATCTGA" @@ -43,7 +43,7 @@ "subtype_start": 8796, "subtype_end": 9417, "orientation": "forward", - "distance": 2.1430894308943085, + "distance": 0.7756134879067851, "protein": "MRTQIVKLF", "aminoacids": "MRTQIVKLF*KH*DQQPH*KK**QHAREWEDPAIKQEFWLKQ*AK*QIQLQ**CRKAILGTKEKLLSASIVAKKGT*PEIAGPLEKRAVGNVEGKDIK*KTVLRDRLIL*GKSGLPTREGRGISFRTDQSQQPHQQRASGLGKRHQLDASGVLQGLLTLSFSQGTFRWGLSSRGVAWAGLGSGEPSDAAYKQLLSACTRSLWLDQI*", "nucleotides": "ATGCGAACCCAGATTGTAAAACTATTTTAAAAGCATTAGGACCAGCAGCCACACTAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCCAGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAATGACAAATTCAGCTACAGTAATGATGCAGAAAGGCAATTTTAGGAACCAAAGAAAAACTGTTAAGTGCTTCAATTGTGGCAAAGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGAAAAAAGGGCTGTTGGAAATGTGGAAGGGAAGGACATCAAATGAAAGACTGTACTGAGAGACAGGCTAATTTTGTAGGGAAAATCTGGCCTTCCCACAAGGGAAGGCCGGGGAATTTCCTTCAGAACAGACCAGAGCCAACAGCCCCACCAGCAGAGAGCTTCAGGTTTGGGGAAGAGACACCAACTAGATGCATCCGGAGTACTACAAGGACTGCTGACACTGAGCTTTTCACAAGGGACTTTCCGCTGGGGACTTTCCAGTAGGGGCGTGGCCTGGGCGGGACTGGGGAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTCTGCCTGTACGAGGTCTCTCTGGTTAGACCAGATCTGA" @@ -55,7 +55,7 @@ "subtype_start": 2084, "subtype_end": 5096, "orientation": "forward", - "distance": 2.1349950149551358, + "distance": 0.7749542207392719, "protein": "FCRENLAFPQGKAGEFPSEQTRANSPTSRELQVWGRDTN", "aminoacids": "FCRENLAFPQGKAGEFPSEQTRANSPTSRELQVWGRDTN*", "nucleotides": "TTTTGTAGGGAAAATCTGGCCTTCCCACAAGGGAAGGCCGGGGAATTTCCTTCAGAACAGACCAGAGCCAACAGCCCCACCAGCAGAGAGCTTCAGGTTTGGGGAAGAGACACCAACTAG" @@ -67,7 +67,7 @@ "subtype_start": 8376, "subtype_end": 8469, "orientation": "forward", - "distance": 2.12, + "distance": 0.7737226277372263, "protein": "RCIRSTTRTADTELFTRDFPLGTFQ", "aminoacids": "RCIRSTTRTADTELFTRDFPLGTFQ*", "nucleotides": "AGATGCATCCGGAGTACTACAAGGACTGCTGACACTGAGCTTTTCACAAGGGACTTTCCGCTGGGGACTTTCCAGTAG" @@ -79,7 +79,7 @@ "subtype_start": 6061, "subtype_end": 6310, "orientation": "forward", - "distance": 2.098780487804878, + "distance": 0.771956580245806, "protein": "DASGVLQGLLTLSFSQGTFRWGLSSRGVAWAGLGSGEPSDAAYKQLLSACTRSLWLDQI", "aminoacids": "DASGVLQGLLTLSFSQGTFRWGLSSRGVAWAGLGSGEPSDAAYKQLLSACTRSLWLDQI*", "nucleotides": "GATGCATCCGGAGTACTACAAGGACTGCTGACACTGAGCTTTTCACAAGGGACTTTCCGCTGGGGACTTTCCAGTAGGGGCGTGGCCTGGGCGGGACTGGGGAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTCTGCCTGTACGAGGTCTCTCTGGTTAGACCAGATCTGA" @@ -91,7 +91,7 @@ "subtype_start": 8377, "subtype_end": 8653, "orientation": "forward", - "distance": 1.9802197802197803, + "distance": 0.7615586171921224, "protein": "DASGVLQGLLTLSFSQGTFRWGLSSRGVAWAGLGSGEPSDAAYKQLLSACTRSLWLDQI", "aminoacids": "DASGVLQGLLTLSFSQGTFRWGLSSRGVAWAGLGSGEPSDAAYKQLLSACTRSLWLDQI*", "nucleotides": "GATGCATCCGGAGTACTACAAGGACTGCTGACACTGAGCTTTTCACAAGGGACTTTCCGCTGGGGACTTTCCAGTAGGGGCGTGGCCTGGGCGGGACTGGGGAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTCTGCCTGTACGAGGTCTCTCTGGTTAGACCAGATCTGA" @@ -103,7 +103,7 @@ "subtype_start": 5558, "subtype_end": 5850, "orientation": "forward", - "distance": 2.1884615384615382, + "distance": 0.7792385647767734, "protein": "M", "aminoacids": "M", "nucleotides": "ATG" @@ -115,7 +115,7 @@ "subtype_start": 5830, "subtype_end": 6045, "orientation": "forward", - "distance": 2.1875, + "distance": 0.7791629563668745, "protein": "M", "aminoacids": "M", "nucleotides": "ATG" @@ -127,7 +127,7 @@ "subtype_start": 5969, "subtype_end": 6045, "orientation": "forward", - "distance": 2.1653846153846152, + "distance": 0.7774095553714444, "protein": "M", "aminoacids": "M", "nucleotides": "ATG" @@ -141,7 +141,7 @@ "subtype_start": 789, "subtype_end": 2292, "orientation": "forward", - "distance": 0.05400000000000005, + "distance": 0.0801186943620179, "protein": "MGARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALEKIEEEQNKSKKKAQQAAADTGHSNQISQNYPIVQNIQGQVVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNXXXPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRNQRKIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKECTERQANFLGKIWPSYKGRPGNFLQSRPEPTAPPEESFRSGVETTTPSQKQEPIDKELYPLTSLRSLFGNDPSSQ", "aminoacids": "MGARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALEKIEEEQNKSKKKAQQAAADTGHSNQISQNYPIVQNIQGQVVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNXXXPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRNQRKIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKECTERQANFLGKIWPSYKGRPGNFLQSRPEPTAPPEESFRSGVETTTPSQKQEPIDKELYPLTSLRSLFGNDPSSQ*", "nucleotides": "ATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAGAATTAGATCGATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAAATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTTAATCCTGGCCTGTTAGAAACATCAGAAGGCTGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAGATCATTATATAATACAGTAGCAACCCTCTATTGTGTGCATCAAAGGATAGAGATAAAAGACACCAAGGAAGCTTTAGAGAAGATAGAGGAAGAGCAAAACAAAAGTAAGAAAAAAGCACAGCAAGCAGCAGCTGACACAGGACACAGCAACCAGATCAGCCAAAATTACCCTATAGTGCAGAACATCCAGGGGCAAGTGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATCAATGAGGAAGCTGCAGAATGGGATAGAGTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGGATGGATGACAAATAATCYWYCTWTCCCAGTAGGAGAAATTTATAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGAATGTATAGCCCTACCAGCATTCTGGACATAAGACAAGGACCAAAAGAACCCTTTAGAGACTATGTAGACCGGTTCTATAAAACTCTAAGAGCCGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAACCCAGATTGTAAGACTATTTTAAAAGCATTGGGACCWGCAGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCCGGCCATAAGGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAACAAATTCAGCTACCATAATGATGCAGAGAGGCAATTTTAGGAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGAGTGTACTGAGAGACAGGCTAATTTTTTAGGGAAGATCTGGCCTTCCTACAAGGGAAGGCCAGGGAATTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTCTGGGGTAGAGACAACAACTCCCTCTCAGAAGCAGGAGCCGATAGACAAGGAACTGTATCCTTTAACTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAA" @@ -153,7 +153,7 @@ "subtype_start": 2084, "subtype_end": 5096, "orientation": "forward", - "distance": 0.03589232303090717, + "distance": 0.054722889368558514, "protein": "FFREDLAFLQGKAREFSSEQTRANSPTRRELQVWGRDNNSLSEAGADRQGTVSFNFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTRALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKITTESIVIWGKTPRFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKILFLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED", "aminoacids": "FFREDLAFLQGKAREFSSEQTRANSPTRRELQVWGRDNNSLSEAGADRQGTVSFNFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTRALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKITTESIVIWGKTPRFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKILFLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*", "nucleotides": "TTTTTTAGGGAAGATCTGGCCTTCCTACAAGGGAAGGCCAGGGAATTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTCTGGGGTAGAGACAACAACTCCCTCTCAGAAGCAGGAGCCGATAGACAAGGAACTGTATCCTTTAACTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACTCATAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGATTGGTTGCACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAAAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCCGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATGAAGACTTCAGGAAGTATACTGCATTTACCATACCTAGTATAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGACATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAGCTGAGACAACATCTGTTGAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTGAATTGGGCAAGTCAGATTTACCCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAGAGCATTAACAGAAGTAATACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTCTAAAAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAGCAGGGGCAAGGCCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGGAAATATGCAAGAACGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGTATAGTAATATGGGGAAAGACTCCTAGATTTAAACTACCCATACAAAAGGAAACATGGGAAACATGGTGGACAGAATATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCTTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGGTATGTTACTAACAAAGGAAGACAAAAGGTTGTCCCCCTAACTAACACAACAAATCAGAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATCAAAGTGAATCAGAGTTAGTCAATCAAATAATAGAGCAGTTAATAAAAAAGGAAAAGGTCTATCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTGCTGGAATCAGGAAAATACTATTTTTAGATGGAATAGATAAGGCCCAAGATGAACATGAGAAATATCACAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGAGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAACTAGATTGTACACATTTAGAAGGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAAACAGGGCAGGAAACAGCATATTTTCTTTTAAAATTAGCAGGAAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTGCTACGGTTAAGGCCGCCTGTTGGTGGGCGGGAATCAAGCAGGAATTTGGAATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTCCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGACATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG" @@ -165,7 +165,7 @@ "subtype_start": 5040, "subtype_end": 5619, "orientation": "forward", - "distance": 0.0625, + "distance": 0.09157509157509158, "protein": "MENRWQVMIVWQVDRMRIRTWKSLVKHHMYVSGKARGWFYRHHYERTHPRISSEVYIPLGDARLVITTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPELADQLIHLYYFDCFSDSAIRKALLGHIVSPRCEYQAGHNKVGSLQYLALAALITPKKIKPPLPSVTKLTEDRWNKPQKTKGHRGSHTMNGH", "aminoacids": "MENRWQVMIVWQVDRMRIRTWKSLVKHHMYVSGKARGWFYRHHYERTHPRISSEVYIPLGDARLVITTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPELADQLIHLYYFDCFSDSAIRKALLGHIVSPRCEYQAGHNKVGSLQYLALAALITPKKIKPPLPSVTKLTEDRWNKPQKTKGHRGSHTMNGH*", "nucleotides": "ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAAAAGTTTAGTAAAACACCATATGTATGTTTCAGGGAAAGCTAGGGGATGGTTTTATAGACATCACTATGAAAGAACTCATCCAAGAATAAGTTCAGAAGTATACATCCCACTAGGGGATGCTAGATTGGTAATAACAACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGGAAAAGGAGATATAGCACACAAGTAGACCCTGAACTAGCAGACCAACTAATTCATCTGTATTACTTTGACTGTTTTTCAGACTCTGCTATAAGAAAGGCCTTATTAGGACATATAGTTAGCCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGATCTCTACAATACTTGGCACTAGCAGCATTAATAACACCAAAAAAGATAAAGCCACCTTTGCCTAGTGTTACAAAACTGACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCACACAATGAATGGACACTAG" @@ -177,7 +177,7 @@ "subtype_start": 5558, "subtype_end": 5850, "orientation": "forward", - "distance": 0.21153846153845945, + "distance": 0.2543940795559648, "protein": "MEQAPEDQGPQREPHNEWTLELLEELKNEAVRHFPRIWLHGLGQHIYETYGDTWAGVEAIIRILQQLLFIHFRIGCRHSRIGVTQQKRARNGASRS", "aminoacids": "MEQAPEDQGPQREPHNEWTLELLEELKNEAVRHFPRIWLHGLGQHIYETYGDTWAGVEAIIRILQQLLFIHFRIGCRHSRIGVTQQKRARNGASRS*T", "nucleotides": "ATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCACACAATGAATGGACACTAGAGCTTTTAGAGGAGCTTAAGAATGAAGCTGTTAGACATTTTCCTAGGATTTGGCTCCATGGCTTAGGGCAACATATCTATGAAACTTATGGGGATACTTGGGCAGGAGTGGAAGCCATAATAAGAATTCTGCAACAACTGCTGTTTATCCATTTCAGAATTGGGTGTCGACATAGCAGAATAGGCGTTACTCAACAGAAGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACT" @@ -189,7 +189,7 @@ "subtype_start": 5830, "subtype_end": 6045, "orientation": "forward", - "distance": 0.29166666666666674, + "distance": 0.31992687385740404, "protein": "MEPVDPRLEPWKHPGSQPKTACTTCYCKKCCFHCQVCFMTKALGISYGRKKRRQRRRPPQDSQTHQVSLSKQ", "aminoacids": "MEPVDPRLEPWKHPGSQPKTACTTCYCKKCCFHCQVCFMTKALGISYGRKKRRQRRRPPQDSQTHQVSLSKQ", "nucleotides": "ATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCATCCAGGAAGTCAGCCTAAAACTGCTTGTACCACTTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATGACAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGACCTCCTCAAGACAGTCAGACTCATCAAGTTTCTCTATCAAAGCAG" @@ -201,7 +201,7 @@ "subtype_start": 5969, "subtype_end": 6045, "orientation": "forward", - "distance": 0.5769230769230769, + "distance": 0.48200514138817474, "protein": "MAGRSGDSDEDLLKTVRLIKFLYQSS", "aminoacids": "MAGRSGDSDEDLLKTVRLIKFLYQSS", "nucleotides": "ATGGCAGGAAGAAGCGGAGACAGCGACGAAGACCTCCTCAAGACAGTCAGACTCATCAAGTTTCTCTATCAAAGCAGT" @@ -213,7 +213,7 @@ "subtype_start": 6061, "subtype_end": 6310, "orientation": "forward", - "distance": 0.7060975609756097, + "distance": 0.53246275519588, "protein": "SIVIIEYRKILRQRKIDRLIDRLIERAEDSGNESEGEVSALVEMGVEMGHHAPWDIDDL", "aminoacids": "MQPIQIAIVALVVAIIIAIVV*SIVIIEYRKILRQRKIDRLIDRLIERAEDSGNESEGEVSALVEMGVEMGHHAPWDIDDL*", "nucleotides": "ATGCAACCTATACAAATAGCAATAGTAGCATTAGTAGTAGCAATAATAATAGCAATAGTTGTGTGATCCATAGTAATCATAGAATATAGGAAAATATTAAGACAAAGGAAAATAGACAGGTTAATTGATAGACTAATAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGAGAAGTGTCAGCACTTGTGGAGATGGGGGTGGAGATGGGGCACCATGCTCCTTGGGATATTGATGATCTGTAG" @@ -225,7 +225,7 @@ "subtype_start": 6224, "subtype_end": 8795, "orientation": "forward", - "distance": 0.0867990654205606, + "distance": 0.12280585765759788, "protein": "MRVKEKCQHLWRWGWRWGTMLLGILMICSATEKLWVTVYYGVPVWKEATTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEVVLVNVTENFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVSLKCTDLGNATNTNSSNTNSSSGEMMMEKGEIKNCSFNISTSIRNKVQKEYAFFYKLDIVPIDNDTTSYTLTSCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNNKTFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEDVVIRSANFTDNAKTIIVQLNQSVEINCTRPNNNTRKSIRIQRGPGRAFVTIGKIGNMRQAHCNISRAKWNATLKQIASKLREQFGNNKTIIFKQSSGGDPEIVTHSFNCGGEFFYCNSTQLFNSTWFNSTWSTEGSNNTEGSDTITLPCRIKQFINMWQEVGKAMYAPPISGQIRCSSNITGLLLTRDGGNNNNGSEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQREKRAVGIGALFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARILAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKSLEQIWNNMTWMEWDREINNYTSLIHSLIEESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGGLVGLRIVFAVLSIVNRVRQGYSPLSFQTHLPNPGGPDRPEGIEEEGGERDRDRSIRLVNGSLALIWDDLRSLCLFSYHRLRDLLLIVTRIVELLGRRGWEALKYWWNLLQYWSQELKNSAVSLLNATAIAVAEGTDRVIEVVQGAYRAIRHIPRRIRQGLERILL", "aminoacids": "MRVKEKCQHLWRWGWRWGTMLLGILMICSATEKLWVTVYYGVPVWKEATTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEVVLVNVTENFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVSLKCTDLGNATNTNSSNTNSSSGEMMMEKGEIKNCSFNISTSIRNKVQKEYAFFYKLDIVPIDNDTTSYTLTSCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNNKTFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEDVVIRSANFTDNAKTIIVQLNQSVEINCTRPNNNTRKSIRIQRGPGRAFVTIGKIGNMRQAHCNISRAKWNATLKQIASKLREQFGNNKTIIFKQSSGGDPEIVTHSFNCGGEFFYCNSTQLFNSTWFNSTWSTEGSNNTEGSDTITLPCRIKQFINMWQEVGKAMYAPPISGQIRCSSNITGLLLTRDGGNNNNGSEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQREKRAVGIGALFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARILAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKSLEQIWNNMTWMEWDREINNYTSLIHSLIEESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGGLVGLRIVFAVLSIVNRVRQGYSPLSFQTHLPNPGGPDRPEGIEEEGGERDRDRSIRLVNGSLALIWDDLRSLCLFSYHRLRDLLLIVTRIVELLGRRGWEALKYWWNLLQYWSQELKNSAVSLLNATAIAVAEGTDRVIEVVQGAYRAIRHIPRRIRQGLERILL*DGWQVVKK*", "nucleotides": "ATGAGAGTGAAGGAGAAGTGTCAGCACTTGTGGAGATGGGGGTGGAGATGGGGCACCATGCTCCTTGGGATATTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAAGGAAGCAACCACCACTCTATTTTGTGCATCAGATGCTAAAGCATATGATGCAGAGGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGTATTGGTAAATGTGACAGAAAATTTTAACATGTGGAAAAATGACATGGTAGAACAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTAGTTTAAAGTGCACTGATTTGGGGAATGCTACTAATACCAATAGTAGTAATACCAATAGTAGTAGCGGGGAAATGATGATGGAGAAAGGAGAGATAAAAAACTGCTCTTTCAATATCAGCACAAGCATAAGAAATAAGGTGCAGAAAGAATATGCATTCTTTTATAAACTTGATATAGTACCAATAGATAATGATACTACCAGCTATACGTTGACAAGTTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAATGTAATAATAAGACGTTCAATGGAACAGGACCATGTACAAATGTCAGCACAGTACAATGTACACATGGAATTAGGCCAGTAGTATCAACTCAACTGCTGTTAAATGGCAGTCTAGCAGAAGAAGATGTAGTAATTAGATCTGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTGAACCAATCTGTAGAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATCCGTATCCAGAGAGGACCAGGGAGAGCATTTGTTACAATAGGAAAAATAGGAAATATGAGACAAGCACATTGTAACATTAGTAGAGCAAAATGGAATGCCACTTTAAAACAGATAGCTAGCAAATTAAGAGAACAATTTGGAAATAATAAAACAATAATCTTTAAGCAATCCTCAGGAGGGGACCCAGAAATTGTAACGCACAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAATTCAACACAACTGTTTAATAGTACTTGGTTTAATAGTACTTGGAGTACTGAAGGGTCAAATAACACTGAAGGAAGTGACACAATCACACTCCCATGCAGAATAAAACAATTTATAAACATGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCATCAGCGGACAAATTAGATGTTCATCAAATATTACAGGGCTGCTATTAACAAGAGATGGTGGTAATAACAACAATGGGTCCGAGATCTTCAGACCTGGAGGAGGAGATATGAGGGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAAAATTGAACCATTAGGAGTAGCACCCACCAAGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTTTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAATGACGCTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAGCAGCAGAACAATTTGCTGAGGGCTATTGAGGCGCAACAGCATCTGTTGCAACTCACAGTCTGGGGCATCAAACAGCTCCAGGCAAGAATCCTGGCTGTGGAAAGATACCTAAAGGATCAACAGCTCCTGGGGATTTGGGGCTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCTTGGAATGCTAGTTGGAGTAATAAATCTCTGGAACAGATTTGGAATAACATGACCTGGATGGAGTGGGACAGAGAAATTAACAATTACACAAGCTTAATACACTCCTTAATTGAAGAATCGCAAAACCAGCAAGAAAAGAATGAACAAGAATTATTGGAATTAGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAATTGGCTGTGGTATATAAAATTATTCATAATGATAGTAGGAGGCTTGGTAGGTTTAAGAATAGTTTTTGCTGTACTTTCTATAGTGAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAAACCCGGGGGGACCCGACAGGCCCGAAGGAATAGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCATTCGATTAGTGAACGGATCCTTAGCACTTATCTGGGACGATCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAATATTGGTGGAATCTCCTACAATATTGGAGTCAGGAGCTAAAGAATAGTGCTGTTAGCTTGCTCAATGCCACAGCTATAGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAGGAGCTTATAGAGCTATTCGCCACATACCTAGAAGAATAAGACAGGGCTTGGAAAGGATTTTGCTATAAGATGGGTGGCAAGTGGTCAAAAAGTAG" @@ -237,7 +237,7 @@ "subtype_start": 8376, "subtype_end": 8469, "orientation": "forward", - "distance": 0.19999999999999996, + "distance": 0.24390243902439024, "protein": "RPTSQTRGDPTGPKE", "aminoacids": "RPTSQTRGDPTGPKE*KKKVERETETDPFD**", "nucleotides": "AGACCCACCTCCCAAACCCGGGGGGACCCGACAGGCCCGAAGGAATAGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCATTCGATTAGTGA" @@ -249,7 +249,7 @@ "subtype_start": 8377, "subtype_end": 8653, "orientation": "forward", - "distance": 0.16483516483516492, + "distance": 0.210025203024363, "protein": "DPPPKPGGTRQARRNRRRRWRERQRQIHSISERILSTYLGRSAEPVPLQLPPLERLTLDCNEDCGTSGTQGVGSPQILVESPTILESGAKE", "aminoacids": "DPPPKPGGTRQARRNRRRRWRERQRQIHSISERILSTYLGRSAEPVPLQLPPLERLTLDCNEDCGTSGTQGVGSPQILVESPTILESGAKE*", "nucleotides": "GACCCACCTCCCAAACCCGGGGGGACCCGACAGGCCCGAAGGAATAGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCATTCGATTAGTGAACGGATCCTTAGCACTTATCTGGGACGATCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAATATTGGTGGAATCTCCTACAATATTGGAGTCAGGAGCTAAAGAATAG" @@ -261,7 +261,7 @@ "subtype_start": 8796, "subtype_end": 9417, "orientation": "forward", - "distance": 0.16991869918698432, + "distance": 0.21510909839439352, "protein": "MGGKWSKSSVIGWPTVRERMRRAEPAADGVGAASRDLEKHGAITSSNTAATNAACAWLEAQEEEEVGFPVTPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIHSQRRQDILDLWIYHTQGYFPDWQNYTPGPGIRYPLTFGWCYKLVPVEPDKVEEANKGENTSLLHPVSLHGMDDPEREVLEWRFDSRLAFHHVARELHPEYFKNC", "aminoacids": "MGGKWSKSSVIGWPTVRERMRRAEPAADGVGAASRDLEKHGAITSSNTAATNAACAWLEAQEEEEVGFPVTPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIHSQRRQDILDLWIYHTQGYFPDWQNYTPGPGIRYPLTFGWCYKLVPVEPDKVEEANKGENTSLLHPVSLHGMDDPEREVLEWRFDSRLAFHHVARELHPEYFKNC*", "nucleotides": "ATGGGTGGCAAGTGGTCAAAAAGTAGTGTGATTGGATGGCCTACTGTAAGGGAAAGAATGAGACGAGCTGAGCCAGCAGCAGATGGGGTGGGAGCAGCATCTCGAGACCTGGAAAAACATGGAGCAATCACAAGTAGCAATACAGCAGCTACCAATGCTGCTTGTGCCTGGCTAGAAGCACAAGAGGAGGAGGAGGTGGGTTTTCCAGTCACACCTCAGGTACCTTTAAGACCAATGACTTACAAGGCAGCTGTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCACTCCCAAAGAAGACAAGATATCCTTGATCTGTGGATCTACCACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGATCAGATATCCATTGACCTTTGGATGGTGCTACAAGCTAGTACCAGTTGAGCCAGATAAGGTAGAAGAGGCCAATAAAGGAGAGAACACCAGCTTGTTACACCCTGTGAGCCTGCATGGAATGGATGACCCTGAGAGAGAAGTGTTAGAGTGGAGGTTTGACAGCCGCCTAGCATTTCATCACGTGGCCCGAGAGCTGCATCCGGAGTACTTCAAGAACTGCTGA" @@ -275,7 +275,7 @@ "subtype_start": 6224, "subtype_end": 8795, "orientation": "forward", - "distance": 1.9582943925233647, + "distance": 0.7595309512374151, "protein": "MNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLRKKKSVTVLDVGDAYFSVPLDKEFRKYTAFTIPSRNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPEIVIYQYMDDLYVGSDLEIGQHRIKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEIVPLTKEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYAKMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDTQWRALRCCI", "aminoacids": "EGLIWSQKRQDILDLWIYHTQGYFPDWQNYTPGPGTRFPLTFGWCFKLVPVDPEKVEEANAGENNSLLHPISLHGMEDPEKEVLMWKFDSRLAFHHMARELHPEYYKNC*LRAIYKGLSAGDFPGRRGLGGTGEWRALRCCI*AAAFCLYWVSLVRPDLSLGALWLAREPTA*ASIKLALSALSSVCPSVV*LW*LEIPQTLLVSVENL*QWRPNRDLKAKEKPEELSRRRTRLAEARTARGEGRRLVSTPKILTSGG*KERDGCESVSIKCGRIRQMGKNSVKARGKEKI*IKTYSMGKQGARTIRS*SWPVRNIRRL*TNTGTATTIPSDRIRRT*III*YNSNPLLCASKDRGKRHQGSFREGRGRAKQK*EKGTASSS*HRKQQPGQPKLPYSAEHPGANGTSGHIT*NFKCMGKSSRREGFQPRSNTHVFSIIRRSHPTRFKHHAKHSGGTSSSHANVKRDHQ*GSCRMG*IAPSACRAYCTRPDERAKGK*HSRNY*YPSGTNRMDDK*STYPSRRNL*KMDNHGIK*NSKDV*SYQHSGHKTRTKGTL*RLCRSVL*NSKSRASFTGGKKLDDRNLVGPKCEPRL*DYFESIGTSRYIRRNDDSMSGSGRTRP*SKSFGGSNEPSNKFSYHNDAERQF*EPKKEC*VFQLWQRRAHSQKLQGP*EKGLLEMWKGRTPNERLY*ETG*FFREDLAFPQGKAREFPSEQTRANSPTRRELQVWGRDNNSRSEAGADRQGTVSFSFPQITLWQRPLVTIRIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLRKKKSVTVLDVGDAYFSVPLDKEFRKYTAFTIPSRNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPEIVIYQYMDDLYVGSDLEIGQHRIKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEIVPLTKEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYAKMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDTQWRALRCCI*", "nucleotides": "GAAGGGCTAATTTGGTCCCAGAAAAGACAAGATATCCTTGATCTGTGGATCTACCACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCGGGGACCAGATTTCCACTGACCTTTGGATGGTGCTTCAAGCTAGTACCAGTTGATCCAGAGAAGGTAGAAGAGGCCAATGCAGGAGAGAACAACAGCTTGTTACACCCTATAAGCCTGCATGGGATGGAGGACCCGGAGAAAGAAGTGTTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCACATGGCCCGAGAGCTGCATCCGGAGTACTACAAGAATTGCTGACTTCGAGCTATCTACAAGGGACTTTCCGCTGGGGACTTTCCAGGGAGGCGTGGCCTGGGCGGGACTGGGGAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTTTGCCTGTACTGGGTCTCTCTGGTTAGACCAGATCTGAGCCTGGGAGCTCTCTGGCTAGCTAGGGAACCCACTGCTTAAGCCTCAATAAAGCTTGCCTTGAGTGCTTTAAGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGGTAACTAGAGATCCCTCAGACCCTTTTAGTCAGTGTGGAAAATCTCTAGCAGTGGCGCCCGAACAGGGACTTGAAAGCGAAAGAGAAACCAGAGGAGCTCTCTCGACGCAGGACTCGGCTTGCTGAAGCGCGCACGGCAAGAGGCGAGGGGCGGCGACTGGTGAGTACGCCAAAAATTTTGACTAGCGGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCGTCAGTATTAAGTGCGGGAGAATTAGACAAATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTTAATCCTGGCCTGTTAGAAACATCAGAAGGCTGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAGATCATTATATAATACAATAGCAACCCTCTATTGTGTGCATCAAAAGATAGAGGTAAAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGCAGCAGCTGACACAGGAAACAACAGCCAGGTCAGCCAAAATTACCCTATAGTGCAGAACATCCAGGGGCAAATGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCACCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAGCCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGGATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCATGGGATTAAATAAAATAGTAAGGATGTATAGTCCTACCAGCATTCTGGACATAAGACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGATCGGTTCTATAAAACTCTAAGAGCCGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAACCCAGATTGTAAGACTATTTTGAAAGCATTGGGACCAGCCGCTACATTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCCGGCCATAAAGCAAGAGTTTTGGCGGAAGCAATGAGCCAAGTAACAAATTCAGCTACCATAATGATGCAGAAAGGCAATTTTAGGAACCAAAAAAGGAATGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGGAAAAGGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGATTGTACTGAGAGACAGGCTAATTTTTTAGGGAAGATCTGGCCTTCCCACAAGGGAAGGCCAGGGAATTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAACAACTCCCGCTCAGAAGCAGGAGCCGATAGACAAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAAGGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAATTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACTCATAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGATTGGTTGCACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCCGCAGGGTTAAGAAAGAAAAAATCAGTAACAGTACTGGATGTGGGGGATGCATATTTTTCAGTTCCCTTAGATAAAGAATTTAGGAAATATACTGCATTTACCATACCCAGTAGAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATTTTAGAGCCTTTTAGAAAACAAAATCCAGAAATAGTTATCTATCAATACATGGATGATTTATATGTAGGATCTGATTTAGAAATAGGGCAGCATAGAATAAAAATAGAGGAACTGAGACAACATCTGTTGAGATGGGGATTTACCACACCAGACAAAAAACATCAGAAAGAACCCCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTGAATTGGGCAAGTCAGATTTACCCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAAATAGTACCACTAACAAAAGAAGCAGAGCTGGAACTGGCAGAAAACAGGGAAATTCTAAAAGAACCAGTACATGGAGTATATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAGCAGGGGCAAGGTCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAAAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTACCCATACAAAAAGAAACATGGGAAGCATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAACAGAGGAAGACAAAAAGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAATTACAAGCAATTCATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATACCCAGTGGCGAGCCCTCAGATGCTGCATATAA" @@ -287,7 +287,7 @@ "subtype_start": 789, "subtype_end": 2292, "orientation": "forward", - "distance": 0.13880000000000003, + "distance": 0.18292040063257775, "protein": "MGARASVLSAGELDKWEKIRLRPGGKKKYRLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTIATLYCVHQKIEVKDTKEALEKVEEEQNKSKKKAQQAAADTGNNSQVSQNYPIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIIMGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSATIMMQKGNFRNQKRNVKCFNCGKEGHIARNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETTTPAQKQEPIDKELYPLASLRSLFGNDPSSQ", "aminoacids": "MGARASVLSAGELDKWEKIRLRPGGKKKYRLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTIATLYCVHQKIEVKDTKEALEKVEEEQNKSKKKAQQAAADTGNNSQVSQNYPIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIIMGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSATIMMQKGNFRNQKRNVKCFNCGKEGHIARNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETTTPAQKQEPIDKELYPLASLRSLFGNDPSSQ*", "nucleotides": "ATGGGTGCGAGAGCGTCAGTATTAAGTGCGGGAGAATTAGACAAATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTTAATCCTGGCCTGTTAGAAACATCAGAAGGCTGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAGATCATTATATAATACAATAGCAACCCTCTATTGTGTGCATCAAAAGATAGAGGTAAAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGCAGCAGCTGACACAGGAAACAACAGCCAGGTCAGCCAAAATTACCCTATAGTGCAGAACATCCAGGGGCAAATGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCACCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAGCCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGGATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCATGGGATTAAATAAAATAGTAAGGATGTATAGTCCTACCAGCATTCTGGACATAAGACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGATCGGTTCTATAAAACTCTAAGAGCCGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAACCCAGATTGTAAGACTATTTTGAAAGCATTGGGACCAGCCGCTACATTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCCGGCCATAAAGCAAGAGTTTTGGCGGAAGCAATGAGCCAAGTAACAAATTCAGCTACCATAATGATGCAGAAAGGCAATTTTAGGAACCAAAAAAGGAATGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGGAAAAGGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGATTGTACTGAGAGACAGGCTAATTTTTTAGGGAAGATCTGGCCTTCCCACAAGGGAAGGCCAGGGAATTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAACAACTCCCGCTCAGAAGCAGGAGCCGATAGACAAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAA" @@ -299,7 +299,7 @@ "subtype_start": 2084, "subtype_end": 5096, "orientation": "forward", - "distance": 0.7912263210369039, + "distance": 0.5606657906263733, "protein": "FFREDLAFPQGKAREFPSEQTRANSPTRRELQVWGRDNNSRSEAGADRQGTVSFSFPQITLWQRPLVTIRIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLRKKKSVTVLDVGDAYFSVPLDKEFRKYTAFTIPSRNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPEIVIYQYMDDLYVGSDLEIGQHRIKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEIVPLTKEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYAKMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDTQWRALRCCI", "aminoacids": "FFREDLAFPQGKAREFPSEQTRANSPTRRELQVWGRDNNSRSEAGADRQGTVSFSFPQITLWQRPLVTIRIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLRKKKSVTVLDVGDAYFSVPLDKEFRKYTAFTIPSRNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPEIVIYQYMDDLYVGSDLEIGQHRIKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEIVPLTKEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYAKMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDTQWRALRCCI*", "nucleotides": "TTTTTTAGGGAAGATCTGGCCTTCCCACAAGGGAAGGCCAGGGAATTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAACAACTCCCGCTCAGAAGCAGGAGCCGATAGACAAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAAGGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAATTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACTCATAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGATTGGTTGCACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCCGCAGGGTTAAGAAAGAAAAAATCAGTAACAGTACTGGATGTGGGGGATGCATATTTTTCAGTTCCCTTAGATAAAGAATTTAGGAAATATACTGCATTTACCATACCCAGTAGAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATTTTAGAGCCTTTTAGAAAACAAAATCCAGAAATAGTTATCTATCAATACATGGATGATTTATATGTAGGATCTGATTTAGAAATAGGGCAGCATAGAATAAAAATAGAGGAACTGAGACAACATCTGTTGAGATGGGGATTTACCACACCAGACAAAAAACATCAGAAAGAACCCCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTGAATTGGGCAAGTCAGATTTACCCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAAATAGTACCACTAACAAAAGAAGCAGAGCTGGAACTGGCAGAAAACAGGGAAATTCTAAAAGAACCAGTACATGGAGTATATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAGCAGGGGCAAGGTCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAAAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTACCCATACAAAAAGAAACATGGGAAGCATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAACAGAGGAAGACAAAAAGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAATTACAAGCAATTCATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATACCCAGTGGCGAGCCCTCAGATGCTGCATATAA" @@ -311,7 +311,7 @@ "subtype_start": 5040, "subtype_end": 5619, "orientation": "forward", - "distance": 1.9968750000000002, + "distance": 0.7630761882015763, "protein": "MRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDTQWRALRCCI", "aminoacids": "MRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDTQWRALRCCI*", "nucleotides": "ATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTACCCATACAAAAAGAAACATGGGAAGCATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAACAGAGGAAGACAAAAAGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAATTACAAGCAATTCATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATACCCAGTGGCGAGCCCTCAGATGCTGCATATAA" @@ -323,7 +323,7 @@ "subtype_start": 5558, "subtype_end": 5850, "orientation": "forward", - "distance": 1.9602564102564104, + "distance": 0.7597138030408427, "protein": "MRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDT", "aminoacids": "MRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDT", "nucleotides": "ATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTACCCATACAAAAAGAAACATGGGAAGCATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAACAGAGGAAGACAAAAAGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAATTACAAGCAATTCATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATACC" @@ -335,7 +335,7 @@ "subtype_start": 8796, "subtype_end": 9417, "orientation": "forward", - "distance": 1.965040650406504, + "distance": 0.7601585105044659, "protein": "MRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDTQWRALRCCI", "aminoacids": "MRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDTQWRALRCCI*", "nucleotides": "ATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTACCCATACAAAAAGAAACATGGGAAGCATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAACAGAGGAAGACAAAAAGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAATTACAAGCAATTCATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATACCCAGTGGCGAGCCCTCAGATGCTGCATATAA" @@ -347,7 +347,7 @@ "subtype_start": 5830, "subtype_end": 6045, "orientation": "forward", - "distance": 2.0305555555555554, + "distance": 0.7660867742611612, "protein": "MVPVRERTHSRSRNLLCRWGS", "aminoacids": "MVPVRERTHSRSRNLLCRWGS*QGD*IRKSRICY*QRKTKSCLPN*HNKSED*ITSNSSSFAGFGIRSKHSNRLTICIRNHSSTTRY", "nucleotides": "ATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAACAGAGGAAGACAAAAAGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAATTACAAGCAATTCATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATAC" @@ -359,7 +359,7 @@ "subtype_start": 5969, "subtype_end": 6045, "orientation": "forward", - "distance": 2.0153846153846153, + "distance": 0.7647402218330415, "protein": "MVPVRERTHSRSRNLLCRWGS", "aminoacids": "MVPVRERTHSRSRNLLCRWGS*QGD*IRKSRICY*QRKTKSCLPN*HNKSED*ITSNSSSFAGFGIRSKHSNRLTICIRNHSSTTRY", "nucleotides": "ATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAACAGAGGAAGACAAAAAGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAATTACAAGCAATTCATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATAC" @@ -371,7 +371,7 @@ "subtype_start": 6061, "subtype_end": 6310, "orientation": "forward", - "distance": 2.09390243902439, + "distance": 0.7715466882358227, "protein": "IPSGEPSDAAYKQLLFACTGSLWLDQI", "aminoacids": "IPSGEPSDAAYKQLLFACTGSLWLDQI*", "nucleotides": "ATACCCAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTTTGCCTGTACTGGGTCTCTCTGGTTAGACCAGATCTGA" @@ -383,7 +383,7 @@ "subtype_start": 8376, "subtype_end": 8469, "orientation": "forward", - "distance": 2.1133333333333333, + "distance": 0.7731707317073171, "protein": "IPSGEPSDAAYKQLLFACTGSLWLDQI", "aminoacids": "IPSGEPSDAAYKQLLFACTGSLWLDQI*", "nucleotides": "ATACCCAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTTTGCCTGTACTGGGTCTCTCTGGTTAGACCAGATCTGA" @@ -395,7 +395,7 @@ "subtype_start": 8377, "subtype_end": 8653, "orientation": "forward", - "distance": 2.065934065934066, + "distance": 0.7691678258734964, "protein": "IPSGEPSDAAYKQLLFACTGSLWLDQI", "aminoacids": "IPSGEPSDAAYKQLLFACTGSLWLDQI*", "nucleotides": "ATACCCAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTTTGCCTGTACTGGGTCTCTCTGGTTAGACCAGATCTGA" @@ -409,7 +409,7 @@ "subtype_start": 789, "subtype_end": 2292, "orientation": "forward", - "distance": 0.15900000000000003, + "distance": 0.20410783055198978, "protein": "MGARASVLSGGKLDQWEKIRLRPGGKKKYQLKHIVWASKELERFAVNPGLLETTEGCRQILGQLQPSLQTGSEELKSLYNTVATLYCVHQRIDVKDTKEALDKIEEEQNKSKEKAKQAAADTGNSNQVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKESFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPGATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRSQRKIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETTTPSQKQESTGKELYPPLASLRSLFGNDPSSQ", "aminoacids": "MGARASVLSGGKLDQWEKIRLRPGGKKKYQLKHIVWASKELERFAVNPGLLETTEGCRQILGQLQPSLQTGSEELKSLYNTVATLYCVHQRIDVKDTKEALDKIEEEQNKSKEKAKQAAADTGNSNQVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKESFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPGATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRSQRKIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETTTPSQKQESTGKELYPPLASLRSLFGNDPSSQ*R*", "nucleotides": "ATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAAAATTAGATCAATGGGAGAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATCAATTAAAACATATAGTATGGGCAAGCAAGGAACTAGAACGATTTGCAGTTAATCCTGGCCTGTTAGAAACAACAGAAGGATGTAGACAAATACTGGGACAGCTACAACCATCTCTTCAGACAGGATCAGAAGAACTTAAATCATTATATAATACAGTAGCAACCCTCTATTGTGTGCATCAAAGGATAGATGTAAAAGACACCAAGGAAGCATTAGATAAGATAGAGGAAGAGCAAAACAAGAGTAAGGAAAAAGCAAAACAAGCAGCAGCTGACACAGGAAACAGCAACCAGGTCAGCCAAAATTACCCTATAGTGCAGAACCTTCAGGGCCAAATGGTACACCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAATAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAATACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGAGTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACCACTAGTACCCTTCAGGAACAAATAGGATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGGATGTATAGTCCTACCAGCATTCTGGATATAAGACAAGGACCAAAAGAATCCTTTAGAGATTATGTAGACCGGTTCTACAAAACTCTAAGAGCTGAGCAAGCCTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATTCAAACCCAGATTGTAAGACTATCTTAAAAGCATTGGGACCAGGAGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCCGGCCATAAAGCAAGAGTCTTGGCTGAAGCAATGAGCCAAGTAACAAATTCAGCTACCATAATGATGCAGAGAGGCAATTTTAGGAGCCAAAGGAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAGGGGCATATAGCCAGAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGATTGTACTGAAAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGGAGGCCAGGAAATTTCCTTCAGAGCAGGCCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAACAACTCCCTCTCAGAAGCAGGAGTCGACAGGCAAGGAACTGTATCCTCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAG" @@ -421,7 +421,7 @@ "subtype_start": 2084, "subtype_end": 5096, "orientation": "forward", - "distance": 0.10618145563310066, + "distance": 0.14621890274040306, "protein": "FFRENLAFPQGEARKFPSEQARANSPTRRELQVWGRDNNSLSEAGVDRQGTVSSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQISIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKESWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARVRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGASNRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLINKEKVYLAWVPAHKGIGGNEQVDKLVSTGIRKVLFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAREIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKVKIIRDYGKQMAGDDCVASRQDED", "aminoacids": "FFRENLAFPQGEARKFPSEQARANSPTRRELQVWGRDNNSLSEAGVDRQGTVSSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQISIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKESWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARVRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGASNRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLINKEKVYLAWVPAHKGIGGNEQVDKLVSTGIRKVLFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAREIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKVKIIRDYGKQMAGDDCVASRQDED*", "nucleotides": "TTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGGAGGCCAGGAAATTTCCTTCAGAGCAGGCCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAACAACTCCCTCTCAGAAGCAGGAGTCGACAGGCAAGGAACTGTATCCTCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTACCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATTAAAGTAAGACAGTATGATCAGATATCCATAGAAATCTGTGGACATAAAGCTATAGGGACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAAATTGGTTGTACTTTAAATTTCCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAACAGAAATTTGTACAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGACAGCACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAAAGAACTCAAGATTTCTGGGAAGTTCAATTAGGGATACCACATCCAGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATGAGGATTTCAGGAAGTATACTGCATTTACCATACCTAGTATAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAATGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGACATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAATTGAGACAACATCTGTTGAGGTGGGGATTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAGAAAAAGAAAGCTGGACTGTCAATGACATACAAAAGTTAGTGGGTAAATTGAATTGGGCAAGTCAGATTTATGCAGGGATCAAAGTAAAACAATTATGTAAACTTCTTAGGGGAGCCAAAGCACTAACAGAAGTAATACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAGATTTTAAAAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAGCAGGGGCAAGGCCAATGGACATATCAGATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAGTGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAGCCACTGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAGGTTACCCATACAAAAAGAAACATGGGAAACATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCATCTAATAGAGAGACTAAATTAGGAAAAGCAGGATATGTTACTGACAGAGGAAGACAGAAAGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAGTTACAAGCAATTCATCTAGCTTTGCAGGATTCAGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATAAAAGTGAATCAGAGTTAGTCAATCAAATAATAGAACAGTTAATAAACAAGGAAAAGGTCTACTTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTTAGTACTGGAATTAGAAAAGTACTATTTTTAGATGGAATAGATAAGGCCCAAGAAGAACATGAGAAATACCACAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTGGTAGCAAGAGAAATAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGAGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAGCTAGATTGTACACATTTAGAAGGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAAACAGGACAGGAAACAGCATACTTTCTCTTAAAATTAGCAGGAAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGTAATTTCACTAGTACTACAGTTAAGGCCGCCTGTTGGTGGGCGGGGATCAAGCAGGAGTTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGACCAGGCTGAACATCTTAAAACAGCAGTACAAATGGCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTGATACAAGACAATAGTGACATAAAAGTAGTGCCAAGAAGAAAAGTAAAAATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG" @@ -433,7 +433,7 @@ "subtype_start": 5040, "subtype_end": 5619, "orientation": "forward", - "distance": 0.21875, + "distance": 0.2608047690014903, "protein": "MENRWQVMIVWQVDRMRIRTWKSLVKHHMYVSGKAKGWFYRHHYESHHPRISSEVHVPLGDARLVITTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPNLADQLIHLYYFDCFSESAIRSAILGHIVSPSCEYQAGHNKVGSLQYLALAALITPKRRKPPLPSVAKLTEDRWNKPQKTKGHRGSHIRNGH", "aminoacids": "MENRWQVMIVWQVDRMRIRTWKSLVKHHMYVSGKAKGWFYRHHYESHHPRISSEVHVPLGDARLVITTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPNLADQLIHLYYFDCFSESAIRSAILGHIVSPSCEYQAGHNKVGSLQYLALAALITPKRRKPPLPSVAKLTEDRWNKPQKTKGHRGSHIRNGH*", "nucleotides": "ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAAAAGTTTAGTAAAACACCATATGTATGTTTCAGGGAAAGCTAAGGGATGGTTTTATAGACATCACTATGAAAGCCATCATCCAAGAATAAGTTCAGAAGTACATGTCCCACTAGGGGATGCTAGATTGGTAATAACAACATATTGGGGTCTGCATACAGGAGAAAGAGATTGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGGAAAAGGAGATATAGCACACAAGTAGACCCCAACCTAGCAGACCAACTGATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAGTGCCATATTAGGACATATAGTTAGTCCTAGTTGTGAATATCAAGCAGGACATAACAAGGTAGGATCTCTACAGTACTTGGCATTAGCAGCATTAATAACACCAAAAAGGAGAAAGCCCCCTTTGCCTAGTGTTGCAAAGCTGACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCACCGAGGGAGCCATATCAGGAATGGACACTAG" @@ -445,7 +445,7 @@ "subtype_start": 5558, "subtype_end": 5850, "orientation": "forward", - "distance": 0.44358974358974423, + "distance": 0.4170684667309551, "protein": "MEQAPEDQGPPREPYQEWTLELLEELKNEAVRHFPRMWLHGLGQHIYDTYGDTWTGVEAIIRILQQLLFIHFRIGCQHSRIGIIRQRRTRNGANRS", "aminoacids": "MEQAPEDQGPPREPYQEWTLELLEELKNEAVRHFPRMWLHGLGQHIYDTYGDTWTGVEAIIRILQQLLFIHFRIGCQHSRIGIIRQRRTRNGANRS*T", "nucleotides": "ATGGAACAAGCCCCAGAAGACCAAGGGCCACCGAGGGAGCCATATCAGGAATGGACACTAGAGCTTTTAGAGGAGCTTAAGAATGAAGCTGTTAGACATTTTCCTAGGATGTGGCTCCATGGCTTAGGGCAACATATCTATGACACTTATGGGGATACTTGGACAGGAGTGGAAGCCATAATAAGAATTCTGCAACAACTGCTGTTCATTCATTTCAGGATTGGGTGTCAACATAGCAGAATAGGCATTATTCGCCAGAGGAGAACAAGAAATGGAGCCAATAGATCCTAGACT" @@ -457,7 +457,7 @@ "subtype_start": 5830, "subtype_end": 6045, "orientation": "forward", - "distance": 0.29166666666666674, + "distance": 0.31992687385740404, "protein": "MEPIDPRLEPWKHPGSQPKTACTSCYCKKCCFHCQVCFMTKALGISYGRKKRRQRRRASQDSQTHQVSLSKQ", "aminoacids": "MEPIDPRLEPWKHPGSQPKTACTSCYCKKCCFHCQVCFMTKALGISYGRKKRRQRRRASQDSQTHQVSLSKQ*", "nucleotides": "ATGGAGCCAATAGATCCTAGACTAGAGCCCTGGAAGCATCCAGGAAGCCAGCCTAAGACTGCTTGTACCTCTTGCTATTGTAAAAAGTGTTGCTTTCATTGTCAAGTCTGTTTCATGACAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTTCTCAAGACAGTCAGACTCATCAAGTTTCTCTATCAAAGCAGTAA" @@ -469,7 +469,7 @@ "subtype_start": 5969, "subtype_end": 6045, "orientation": "forward", - "distance": 0.5192307692307692, + "distance": 0.4557731262660365, "protein": "MAGRSGDSDEELLKTVRLIKFLYQSSK", "aminoacids": "MAGRSGDSDEELLKTVRLIKFLYQSSK", "nucleotides": "ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTTCTCAAGACAGTCAGACTCATCAAGTTTCTCTATCAAAGCAGTAAG" @@ -481,7 +481,7 @@ "subtype_start": 6061, "subtype_end": 6310, "orientation": "forward", - "distance": 0.5804878048780489, + "distance": 0.48354327509142636, "protein": "MNSLQISAIVAIVVAIILAIVVWSIVFIEYRKILRQRKIDRLIDRIRERAEDSGNESEGDQEELSTALMEMGHHAPWDVDDL", "aminoacids": "MNSLQISAIVAIVVAIILAIVVWSIVFIEYRKILRQRKIDRLIDRIRERAEDSGNESEGDQEELSTALMEMGHHAPWDVDDL*", "nucleotides": "ATGAACTCTTTACAAATATCAGCAATAGTAGCAATAGTAGTAGCAATAATACTAGCAATAGTTGTGTGGTCTATAGTATTCATAGAATATAGGAAAATATTAAGACAAAGAAAAATAGATAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGGGATCAGGAAGAACTATCAACAGCACTTATGGAGATGGGGCACCATGCTCCTTGGGATGTTGATGATCTGTAG" @@ -493,7 +493,7 @@ "subtype_start": 6224, "subtype_end": 8795, "orientation": "forward", - "distance": 0.4975467289719626, + "distance": 0.4452133553553136, "protein": "MRVKGIRKNYQQHLWRWGTMLLGMLMICSAAGNLWVTVYYGVPVWKEATTTLFCASDAKAYGTEVHNVWATHACVPTDPNPQEVRLENVTENFNMWRNPMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDLGQESTNNNITGSIEKGEMKNCSFNISSSKGSKGHKEYASFYKLDVVPIGNNKTNGNYSSYRLISCNTSVITQACPKVSFEPIPIHFCAPAGYAILKCNDKQFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSANFTDNAKTIIVQLNQSVEITCTRPGNNTIRGVHMGPGKAFYAGAITGDIRKAHCIINKAKWNSTLRLVVAKLSEQFRNKTINFTQPSGGDPEIVTHSFNCGGEFFYCNTTKLFNSTWNATHMINGTWNDTEGNITLPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGGKTNESNTTEIFRPGGGDMRDNWRSELYKYKVVRIEPLGVAPTKAKRRVVQREKRAVGIGALFLGFLGAAGSTMGATSMALTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGVKQLQARVLALERYLKDQQLLGFWGCSGKLICTTDVPWNASWSNKSLGQIWENMTWMEWEREIDNYTSLIYTLITESQIQQEQNEKELLELDKWANLWNWFGITNWLWYIKIFIMIVGGLVGLRIVFAVLSIVNRVRQGYSPLSFQTRFPAPRGPDRPEGIEEEGGERDRDRSAPLVKGFLALIWVDLRSLCLFSYHRLRDLLLIITRIVELLGRRGWEVLKYLWSLLQYWTQELKNSAVSLLNATAIAVAEGTDRIIEVLQRVFRAILHIPTRIRQGFERALL", "aminoacids": "MRVKGIRKNYQQHLWRWGTMLLGMLMICSAAGNLWVTVYYGVPVWKEATTTLFCASDAKAYGTEVHNVWATHACVPTDPNPQEVRLENVTENFNMWRNPMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDLGQESTNNNITGSIEKGEMKNCSFNISSSKGSKGHKEYASFYKLDVVPIGNNKTNGNYSSYRLISCNTSVITQACPKVSFEPIPIHFCAPAGYAILKCNDKQFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSANFTDNAKTIIVQLNQSVEITCTRPGNNTIRGVHMGPGKAFYAGAITGDIRKAHCIINKAKWNSTLRLVVAKLSEQFRNKTINFTQPSGGDPEIVTHSFNCGGEFFYCNTTKLFNSTWNATHMINGTWNDTEGNITLPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGGKTNESNTTEIFRPGGGDMRDNWRSELYKYKVVRIEPLGVAPTKAKRRVVQREKRAVGIGALFLGFLGAAGSTMGATSMALTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGVKQLQARVLALERYLKDQQLLGFWGCSGKLICTTDVPWNASWSNKSLGQIWENMTWMEWEREIDNYTSLIYTLITESQIQQEQNEKELLELDKWANLWNWFGITNWLWYIKIFIMIVGGLVGLRIVFAVLSIVNRVRQGYSPLSFQTRFPAPRGPDRPEGIEEEGGERDRDRSAPLVKGFLALIWVDLRSLCLFSYHRLRDLLLIITRIVELLGRRGWEVLKYLWSLLQYWTQELKNSAVSLLNATAIAVAEGTDRIIEVLQRVFRAILHIPTRIRQGFERALL*", "nucleotides": "ATGAGAGTGAAGGGGATCAGGAAGAACTATCAACAGCACTTATGGAGATGGGGCACCATGCTCCTTGGGATGTTGATGATCTGTAGTGCTGCAGGCAATTTGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAAAGAAGCAACCACCACTCTATTTTGTGCATCAGATGCTAAAGCATATGGTACAGAGGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTGAGATTGGAAAATGTGACAGAAAATTTTAATATGTGGAGAAATCCAATGGTAGAACAGATGCATGAGGATATAATTAGTTTATGGGATCAAAGCCTAAAGCCATGTGTAAAGTTGACCCCACTCTGTGTCACTTTAAATTGCACTGATTTGGGACAGGAGAGTACCAATAATAATATCACAGGAAGTATAGAGAAAGGAGAAATGAAAAACTGCTCTTTCAATATCTCCTCAAGCAAAGGAAGTAAGGGGCATAAAGAATATGCATCTTTTTATAAACTTGATGTAGTACCAATAGGTAATAATAAGACTAATGGTAATTATTCTAGCTATAGGTTGATAAGTTGTAATACCTCAGTCATTACACAGGCCTGTCCAAAAGTATCATTTGAGCCAATTCCCATACATTTTTGTGCCCCGGCTGGGTATGCGATTCTAAAGTGTAATGATAAACAATTCAATGGAACAGGACCATGTACAAATGTCAGCACAGTACAGTGTACACATGGAATTAGGCCAGTAGTATCAACTCAACTGCTGTTAAATGGTAGTCTAGCAGAAGAAGAGGTAGTAATTAGATCTGCCAATTTCACGGACAATGCTAAAACCATAATAGTACAGCTGAACCAATCTGTAGAAATTACTTGTACAAGACCCGGTAACAATACAATAAGAGGGGTTCACATGGGACCAGGGAAGGCATTTTATGCAGGAGCAATAACAGGAGATATAAGAAAAGCACATTGTATCATTAATAAAGCAAAATGGAACAGTACTTTAAGACTGGTAGTTGCAAAATTAAGTGAGCAATTTAGGAATAAAACAATAAACTTTACTCAACCCTCAGGAGGGGACCCAGAAATTGTAACACACAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAATACAACAAAACTGTTTAATAGTACTTGGAATGCAACACACATGATTAATGGTACTTGGAATGATACTGAGGGAAATATCACCCTCCCATGCAGAATAAAACAAATTATAAACATGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCATCAGAGGACAAATTAGATGTTCATCCAATATTACAGGGTTGCTATTAACAAGAGATGGTGGTAAGACTAACGAGAGCAACACCACCGAGATCTTTAGACCTGGAGGAGGAGATATGAGAGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAGAATTGAACCATTAGGGGTAGCACCCACCAAGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTCTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAACGTCGATGGCGTTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAACAGCAGAACAATTTGCTGAGAGCTATTGAGGCGCAACAACATTTGTTGCAACTCACAGTCTGGGGCGTCAAGCAGCTCCAGGCAAGAGTCCTGGCTCTGGAAAGATACCTAAAGGATCAACAGCTCCTGGGGTTTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGATGTGCCTTGGAATGCTAGTTGGAGTAATAAATCTCTGGGACAAATTTGGGAGAACATGACCTGGATGGAGTGGGAAAGAGAAATTGATAATTACACAAGCTTAATATACACTTTAATTACAGAATCGCAGATCCAACAAGAACAGAATGAAAAAGAATTGTTGGAATTGGATAAATGGGCAAATTTGTGGAATTGGTTTGGCATAACAAACTGGCTGTGGTACATAAAAATATTTATAATGATAGTAGGAGGCTTAGTAGGTTTAAGAATAGTTTTTGCTGTACTTTCTATAGTGAATAGAGTTAGGCAGGGATACTCACCATTATCGTTTCAGACCCGCTTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGCTCCATTAGTGAAAGGATTCTTAGCACTTATCTGGGTCGATCTACGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATAATAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGTCCTCAAATACTTGTGGAGTCTCCTACAGTATTGGACACAGGAACTAAAGAATAGTGCTGTTAGCTTGCTCAATGCCACAGCCATAGCAGTAGCTGAGGGGACAGATAGGATTATAGAAGTATTACAAAGAGTTTTTAGAGCTATCCTCCATATCCCTACAAGAATAAGACAGGGCTTTGAAAGGGCTTTGCTATAA" @@ -505,7 +505,7 @@ "subtype_start": 8376, "subtype_end": 8469, "orientation": "forward", - "distance": 0.4866666666666659, + "distance": 0.439759036144578, "protein": "RPASQPRGDPTGPKESKKKVERETETDPLH", "aminoacids": "RPASQPRGDPTGPKESKKKVERETETDPLH**", "nucleotides": "AGACCCGCTTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGCTCCATTAGTGA" @@ -517,7 +517,7 @@ "subtype_start": 8377, "subtype_end": 8653, "orientation": "forward", - "distance": 0.2637362637362637, + "distance": 0.29843322556577967, "protein": "DPLPSPEGTRQARRNRRRRWRERQRQIRSISERILSTYLGRSTEPVPLQLPPLERLTLDNNEDCGTSGTQGVGSPQILVESPTVLDTGTKE", "aminoacids": "DPLPSPEGTRQARRNRRRRWRERQRQIRSISERILSTYLGRSTEPVPLQLPPLERLTLDNNEDCGTSGTQGVGSPQILVESPTVLDTGTKE*", "nucleotides": "GACCCGCTTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGCTCCATTAGTGAAAGGATTCTTAGCACTTATCTGGGTCGATCTACGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATAATAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGTCCTCAAATACTTGTGGAGTCTCCTACAGTATTGGACACAGGAACTAAAGAATAG" @@ -529,7 +529,7 @@ "subtype_start": 8796, "subtype_end": 9417, "orientation": "forward", - "distance": 0.3878048780487735, + "distance": 0.38480154888673335, "protein": "MGGKWSKSSLVGWPNVRERMRRAEPAADGVGAVSRDLERHGAITSSNTATNNADCAWLEAQKEEEVGFPVTPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIHSQKRQDILDLWIYHTQGYFPDWQNYTPGPGVRYPLTFGWCFKLVPVEPTDRENDRLLHPASLQGMEDPEGEVLEWRFDSRLAFHHMARELHPEYYKNC", "aminoacids": "MGGKWSKSSLVGWPNVRERMRRAEPAADGVGAVSRDLERHGAITSSNTATNNADCAWLEAQKEEEVGFPVTPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIHSQKRQDILDLWIYHTQGYFPDWQNYTPGPGVRYPLTFGWCFKLVPVEPTDRENDRLLHPASLQGMEDPEGEVLEWRFDSRLAFHHMARELHPEYYKNC*HRAFYKGLSAGDFPGEAWPGRGRGVASPQMLHISSCFCLYWVSLVRPDLSLGALWLTREPTA*", "nucleotides": "ATGGGGGGCAAGTGGTCAAAAAGTAGTTTGGTTGGATGGCCTAATGTAAGGGAAAGAATGAGACGAGCTGAGCCAGCAGCAGATGGGGTGGGAGCAGTATCTCGAGACTTGGAAAGACATGGAGCAATCACAAGTAGTAATACAGCAACTAACAATGCTGATTGTGCCTGGCTAGAAGCACAAAAGGAGGAGGAGGTGGGTTTTCCAGTCACACCTCAGGTACCTTTAAGACCAATGACTTACAAGGCAGCTGTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCACTCCCAAAAAAGACAAGATATTCTTGATCTATGGATCTACCACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGGTCAGATATCCACTGACCTTTGGATGGTGCTTCAAGCTAGTACCAGTTGAGCCCACTGACAGAGAGAATGACAGATTGCTGCACCCTGCAAGCCTGCAGGGGATGGAAGACCCGGAGGGAGAAGTGTTAGAGTGGAGGTTTGACAGCCGCCTGGCATTTCATCACATGGCCCGAGAGCTGCATCCGGAGTACTACAAGAACTGCTGACATCGAGCTTTCTACAAGGGACTTTCCGCTGGGGACTTTCCAGGGGAGGCGTGGCCTGGGCGGGGCAGGGGAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTCTGCCTGTACTGGGTCTCTCTGGTTAGACCAGATCTGAGCCTGGGAGCTCTCTGGCTGACTAGGGAACCCACTGCTTAA" @@ -543,7 +543,7 @@ "subtype_start": 789, "subtype_end": 2292, "orientation": "forward", - "distance": 0.8911999999999998, + "distance": 0.5897300158814187, "protein": "MAYSPVAAPRLLPCALQQATPQDLNTMLNTVGGHQAAMQMLKEVINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQATGTANILMQRGNFRNQRKPVKCFNCGKEGHIAKNCRAPRKKGCWKCGREGHQMKDCTERQANFLGKIWPSHKGRPGNFPQSRPEIPQSRPEPTAPPAPPEESFRFGEATTPSQKQETMDKELYPPLTSLRSLFGNDPSSQ", "aminoacids": "MYTIEGGYCII**SKFF*SCLKGWL*LFQYLFTAS*CF*QARINCESF*FPACPYYMF*SIFFLSPWP*PNFLPSI*FSPAQY*RSRTHLSPSSLR*SKMAYSPVAAPRLLPCALQQATPQDLNTMLNTVGGHQAAMQMLKEVINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQATGTANILMQRGNFRNQRKPVKCFNCGKEGHIAKNCRAPRKKGCWKCGREGHQMKDCTERQANFLGKIWPSHKGRPGNFPQSRPEIPQSRPEPTAPPAPPEESFRFGEATTPSQKQETMDKELYPPLTSLRSLFGNDPSSQ*", "nucleotides": "ATGTACACAATAGAGGGTGGCTACTGTATTATATAATGATCTAAGTTCTTCTGATCCTGTCTGAAGGGATGGTTGTAGCTGTTCCAATATCTGTTTACAGCCTCCTGATGTTTCTAACAGGCCAGGATTAACTGCGAATCGTTCTAGTTCCCTGCTTGCCCATACTATATGTTTTAATCTATATTTTTTCTTTCCCCCTGGCCTTAACCGAATTTTCTCCCATCTATCTAATTCTCCCCCGCTCAATACTGACGCTCTCGCACCCATCTCTCTCCTTCTAGCCTCCGCTAGTCAAAAATGGCGTACTCACCAGTCGCCGCCCCTCGCCTCTTGCCGTGCGCGCTTCAGCAAGCCACCCCACAAGATTTGAACACTATGCTAAACACAGTGGGTGGACACCAAGCAGCTATGCAAATGTTAAAAGAGGTCATCAATGAGGAAGCTGCAGAATGGGATAGATTACATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGGATGGATGACACATAATCCACCTATCCCAGTAGGAGAGATTTATAAAAGATGGATAATTCTGGGACTAAATAAAATAGTAAGAATGTATAGCCCTACCAGCATTTTGGACATAAAGCAAGGGCCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAAAACTTTAAGAGCCGAGCAAGCTACACAGGAAGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAGAATGCAAATCCAGATTGTAAAACTATTTTAAAAGCATTAGGACCAGCAGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGGGGACCCGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGCAACAGGTACAGCCAACATACTGATGCAGAGAGGCAATTTTAGGAACCAAAGAAAGCCTGTTAAATGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAGGGAAGGACACCAAATGAAGGATTGCACTGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCTCACAAGGGAAGGCCAGGGAACTTTCCTCAGAGCCGACCAGAAATTCCTCAGAGCAGACCAGAGCCAACAGCCCCACCAGCCCCTCCAGAAGAGAGCTTCAGGTTTGGGGAAGCAACAACTCCCTCTCAGAAGCAGGAGACAATGGACAAGGAGCTGTATCCTCCTCTAACTTCCCTCAGATCACTCTTTGGCAACGACCCATCGTCACAATAA" @@ -555,7 +555,7 @@ "subtype_start": 2084, "subtype_end": 5096, "orientation": "forward", - "distance": 0.2169491525423728, + "distance": 0.259214256784123, "protein": "FFRENLAFSQGKARELSSEPTRNSSEQTRANSPTSPSRRELQVWGSNNSLSEAGDNGQGAVSSSNFPQITLWQRPIVTIKIGGQLKEALLDTGADDTVLEDIDLPGKWKPKMIGGIGGFIKVRQYEQVPIEISGHKAIGTVLVGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDGTKWRKLVDFRELNKRTQEFWEIQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKTNPDIVIYQYMDDLYVGSDLEIGQHRTKVEELRQHLMRWGFTTPDKKHQKEPPFLWMGYELHPNKWTVQPIVLPEKESWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGTKALTEVVPLTEEAELELAENREILKDPVHGAYYDPAKDLIAELQKQGEGQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKISTESIVIWGRTPKFRLPIQKETWETWWTDYWQATWIPEWEFVNTPPLVKLWYQLEKEPIIGAETFYVDGAANRDNKSGKAGYVTDRGRQKVVTINDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIEKAQEDHEKYHSNWRTMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEEKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGRNFTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATEIQTKELQKQITKIPNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED", "aminoacids": "FFRENLAFSQGKARELSSEPTRNSSEQTRANSPTSPSRRELQVWGSNNSLSEAGDNGQGAVSSSNFPQITLWQRPIVTIKIGGQLKEALLDTGADDTVLEDIDLPGKWKPKMIGGIGGFIKVRQYEQVPIEISGHKAIGTVLVGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDGTKWRKLVDFRELNKRTQEFWEIQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKTNPDIVIYQYMDDLYVGSDLEIGQHRTKVEELRQHLMRWGFTTPDKKHQKEPPFLWMGYELHPNKWTVQPIVLPEKESWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGTKALTEVVPLTEEAELELAENREILKDPVHGAYYDPAKDLIAELQKQGEGQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKISTESIVIWGRTPKFRLPIQKETWETWWTDYWQATWIPEWEFVNTPPLVKLWYQLEKEPIIGAETFYVDGAANRDNKSGKAGYVTDRGRQKVVTINDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIEKAQEDHEKYHSNWRTMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEEKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGRNFTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATEIQTKELQKQITKIPNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*", "nucleotides": "TTTTTTAGGGAAAATCTGGCCTTCTCACAAGGGAAGGCCAGGGAACTTTCCTCAGAGCCGACCAGAAATTCCTCAGAGCAGACCAGAGCCAACAGCCCCACCAGCCCCTCCAGAAGAGAGCTTCAGGTTTGGGGAAGCAACAACTCCCTCTCAGAAGCAGGAGACAATGGACAAGGAGCTGTATCCTCCTCTAACTTCCCTCAGATCACTCTTTGGCAACGACCCATCGTCACAATAAAGATAGGGGGGCAACTAAAGGAAGCTTTATTAGATACAGGAGCAGATGATACAGTATTAGAGGACATAGATTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAATATGAACAGGTACCCATAGAAATTAGCGGACACAAAGCTATAGGTACAGTGTTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGCTTGGTTGCACTCTAAATTTTCCCATCAGCCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGACGGCCCAAAGGTTAAACAATGGCCATTAACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTGTTTGCCATAAAGAAAAAAGATGGCACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGAATTCTGGGAAATTCAATTAGGTATACCACATCCTGCAGGGCTAAAAAAGAAAAAATCAGTCACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATAAAGACTTCAGGAAATATACTGCATTTACCATACCTAGTATAAACAATGAGACACCAGGGATTAGATATCAGTATAATGTGCTTCCACAAGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAGATCCTGGAGCCTTTTAGAAAGACAAATCCAGACATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAACATAGAACAAAAGTAGAGGAACTGAGGCAACATCTGATGAGGTGGGGATTTACCACACCAGACAAAAAGCACCAGAAAGAACCCCCATTCCTTTGGATGGGGTATGAACTCCATCCTAATAAATGGACAGTACAGCCTATAGTACTGCCAGAAAAGGAAAGTTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTATGCAGGGATTAAAGTGAAGCAATTATGTAAGCTCCTTAGGGGAACCAAAGCATTAACAGAAGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAGATTCTAAAAGATCCGGTACATGGAGCATATTATGACCCAGCAAAGGACTTAATAGCAGAACTACAGAAGCAGGGAGAAGGTCAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGGAAATATGCAAGAACGAGGGGTGCCCATACTAATGATGTAAAGCAATTAACAGAGGCAGTGCAAAAAATATCCACAGAAAGTATAGTAATATGGGGAAGGACTCCTAAATTTAGATTACCCATACAAAAAGAAACATGGGAAACATGGTGGACAGATTATTGGCAAGCCACCTGGATCCCTGAGTGGGAGTTTGTCAACACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAAAAAGAACCCATAATAGGAGCAGAAACCTTCTATGTAGATGGGGCAGCTAATAGGGATAATAAATCAGGAAAAGCAGGATATGTTACTGATAGAGGAAGACAAAAGGTTGTCACCATAAATGACACAACAAATCAGAAAACTGAATTACAAGCCATTCATCTAGCCTTGCAGGATTCGGGGCTAGAAGTAAACATAGTAACAGACTCACAGTATGCATTAGGGATCATTCAAGCACAACCAGATAAAAGTGAATCAGAGTTAGTCAGTCAAATAATAGAACAGTTAATAAAAAAGGAAAAGGTCTACCTGGCATGGGTGCCAGCCCACAAAGGAATTGGAGGAAATGAACAGGTAGATAAACTAGTCAGTGCTGGAATCAGGAAAGTACTATTTTTAGATGGAATAGAAAAAGCCCAAGAAGACCATGAGAAATATCACAGTAATTGGAGAACAATGGCTAGTGATTTTAACCTACCACCTATAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGAGAAGCTATGCATGGGCAAGTAGACTGTAGTCCAGGTATATGGCAGCTAGATTGTACACATTTAGAAGAAAAAATTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTGATTCCAGCAGAGACAGGGCAAGAAACAGCATACTTTATTTTAAAACTAGCAGGAAGATGGCCAGTAAAAACAATACATACAGACAATGGCCGCAATTTCACCAGTAATACAGTGAAGGCCGCCTGTTGGTGGGCGGGAATCAAGCAGGAATTTGGTATTCCCTACAATCCCCAGAGTCAAGGAGTAGTAGAATCTATGAATAATGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGATACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACAGAAATACAGACTAAAGAATTACAAAAACAAATTACAAAAATTCCAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAACAGTGACATAAAAGTAGTGCCAAGAAGAAAAGCAAAAATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG" @@ -567,7 +567,7 @@ "subtype_start": 5040, "subtype_end": 5619, "orientation": "forward", - "distance": 0.34375, + "distance": 0.3566796368352788, "protein": "MENRWQVMIVWQVDRMRIRTWKSLVKYHMYISKKAKKWAYRHHYETTHPRISSEVHIPLGDDRLVITTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPDLADHLIHVHYFDCFSESAIRNAILGHRVSPRCEYQAGHNKVGSLQYLALTAVITPKKIKPPLPSVKKLTEDRWNKPQKTKGHRESHTMNGH", "aminoacids": "MENRWQVMIVWQVDRMRIRTWKSLVKYHMYISKKAKKWAYRHHYETTHPRISSEVHIPLGDDRLVITTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPDLADHLIHVHYFDCFSESAIRNAILGHRVSPRCEYQAGHNKVGSLQYLALTAVITPKKIKPPLPSVKKLTEDRWNKPQKTKGHRESHTMNGH*SF*", "nucleotides": "ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAAAAGTTTAGTAAAATACCATATGTATATTTCAAAGAAAGCCAAAAAATGGGCTTATAGACACCATTACGAAACCACTCATCCAAGAATAAGTTCAGAAGTACATATCCCACTAGGGGATGATAGATTGGTAATAACAACATATTGGGGTCTGCATACAGGAGAGAGAGACTGGCATTTGGGCCAGGGAGTCTCCATAGAATGGAGAAAAAGGAGATATAGCACACAAGTAGACCCTGACTTAGCAGACCATCTAATTCATGTGCATTATTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACATAGAGTTAGCCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGATCTCTACAATACTTGGCACTAACAGCAGTAATAACACCAAAGAAGATAAAGCCACCTTTGCCTAGTGTAAAGAAACTGACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGAGAGCCATACAATGAATGGACACTAGAGCTTTTAG" @@ -579,7 +579,7 @@ "subtype_start": 5558, "subtype_end": 5850, "orientation": "forward", - "distance": 0.5192307692307698, + "distance": 0.4557731262660367, "protein": "MEQAPEDQGPQREPYNEWTLELLEELKREAVRHFPRPWLQDLGQYIYETYGDTWTGVEAIIRILQQMLFIHFRIGCHHSRIGIVLQRRARNGASRS", "aminoacids": "MEQAPEDQGPQREPYNEWTLELLEELKREAVRHFPRPWLQDLGQYIYETYGDTWTGVEAIIRILQQMLFIHFRIGCHHSRIGIVLQRRARNGASRS*T", "nucleotides": "ATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGAGAGCCATACAATGAATGGACACTAGAGCTTTTAGAAGAGCTTAAGAGAGAAGCTGTTAGACATTTCCCTAGACCATGGCTACAAGACCTAGGACAATATATCTATGAAACTTATGGGGATACTTGGACAGGAGTGGAAGCCATAATAAGAATTCTGCAACAAATGCTGTTTATTCATTTCAGAATTGGGTGTCACCATAGCAGAATAGGCATTGTTCTGCAAAGAAGAGCAAGAAATGGAGCCAGTAGATCATAGACT" @@ -591,7 +591,7 @@ "subtype_start": 5830, "subtype_end": 6045, "orientation": "forward", - "distance": 0.45833333333333326, + "distance": 0.42503863987635226, "protein": "MEPVDHRLEPWKHPGSQPRTPCTNCYCKKCCFHCQVCFIQKALGISYGRKKRRQRRRSPQDSQTHQVPLPKQ", "aminoacids": "MEPVDHRLEPWKHPGSQPRTPCTNCYCKKCCFHCQVCFIQKALGISYGRKKRRQRRRSPQDSQTHQVPLPKQ", "nucleotides": "ATGGAGCCAGTAGATCATAGACTAGAGCCCTGGAAGCATCCAGGAAGTCAGCCTAGGACTCCTTGTACCAATTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTGTGTTTTATACAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGAGACGAAGATCTCCTCAAGACAGTCAGACTCATCAAGTTCCTCTACCAAAGCAG" @@ -603,7 +603,7 @@ "subtype_start": 5969, "subtype_end": 6045, "orientation": "forward", - "distance": 0.6923076923076923, + "distance": 0.5275498241500586, "protein": "MAGRSGDRDEDLLKTVRLIKFLYQSS", "aminoacids": "MAGRSGDRDEDLLKTVRLIKFLYQSS", "nucleotides": "ATGGCAGGAAGAAGCGGAGACAGAGACGAAGATCTCCTCAAGACAGTCAGACTCATCAAGTTCCTCTACCAAAGCAGT" @@ -615,7 +615,7 @@ "subtype_start": 6061, "subtype_end": 6310, "orientation": "forward", - "distance": 0.6560975609756099, + "distance": 0.5141437308868502, "protein": "MQSLEILAIVALVVAAIIAIVVWTIVGIEYRKILRQRKIDKIINRIRERAEDSGNESEGDQEELSALVVEMGHDAPWDVDDL", "aminoacids": "MQSLEILAIVALVVAAIIAIVVWTIVGIEYRKILRQRKIDKIINRIRERAEDSGNESEGDQEELSALVVEMGHDAPWDVDDL*", "nucleotides": "ATGCAATCTTTAGAGATATTAGCAATAGTAGCATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGACCATAGTAGGCATAGAATATAGGAAAATATTAAGACAAAGAAAAATAGATAAAATAATTAATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGCGAAGGGGATCAGGAAGAATTGTCAGCACTTGTGGTGGAAATGGGGCACGATGCTCCTTGGGATGTTGATGATCTGTAG" @@ -627,7 +627,7 @@ "subtype_start": 6224, "subtype_end": 8795, "orientation": "forward", - "distance": 0.6022196261682247, + "distance": 0.49272619525530026, "protein": "MRAKGIRKNCQHLWWKWGTMLLGMLMICSAAENLWVTVYYGVPVWRDANTTLFCASDAKAYDTEVHNVWATHACVPTDPNPHEVELKNVTENFNMWKNNMVDQMHEDIINLWDQSLKPCAKLTPLCVTLNCTDLRNDTVGNQTNLTETNTIQGREMTNCSFNITTEIRDKVRKEHALFYKLDVMPIDRDNTSYTLINCNTSVITQACPKVTFEPIPIHYCTPAGFAILKCKDEMFNGTGPCKNVSTVQCTHGIRPVVSTQLLLNGSLAEKEIVLRSENFTDNGKNIIVQLNRSIVINCTRPNNNTRKSISVAGRAIYATGQIIGDIRQAHCNISETDWNDTLSKIVEKLREKFGKDKTIIFNQSSGGDMEIETHSFNCGGEFFYCNTTRLFNSTWSVNGTSINGTKNITLPCRIKQIINRWQEVGKAMYAPPISGIIRCSSNITGLILTRDGGTNNSTEETETFRPGGGNMKDNWRSELYKYKVVKIEPLGVAPTKAQRRVVQREKRAIGALGAMFLGFLGAAGSTMGAASLTLTVQARQLLSGIVQQQNNLLRAIEAQQHMLQLTVWGIKQLQARVLSVERYLQDQQLLGIWGCSGKLICTTTVPWNTSWSNKSYDTIWDNMTWMQWDREIQNYTGKIYNLLEESQIQQEKNEKELLELDQWANLWNWFSITKWLWYIKIFIMIVGGLVGLKIIFAVFSIVNRVRQGYSPLSLQTLLPTPRGPDRPEGIEEEGGERDRGRSGRLVTGFLPLIWDDLRSLCLFSYHHLRDLLLIVLRTVQVLGHRGWEILKYWWSLLQYWIQELKNSAVSLLNTIAIAVAEGTDRVIEVGQRIGRAFLHIPRRIRQGLERALQ", "aminoacids": "MRAKGIRKNCQHLWWKWGTMLLGMLMICSAAENLWVTVYYGVPVWRDANTTLFCASDAKAYDTEVHNVWATHACVPTDPNPHEVELKNVTENFNMWKNNMVDQMHEDIINLWDQSLKPCAKLTPLCVTLNCTDLRNDTVGNQTNLTETNTIQGREMTNCSFNITTEIRDKVRKEHALFYKLDVMPIDRDNTSYTLINCNTSVITQACPKVTFEPIPIHYCTPAGFAILKCKDEMFNGTGPCKNVSTVQCTHGIRPVVSTQLLLNGSLAEKEIVLRSENFTDNGKNIIVQLNRSIVINCTRPNNNTRKSISVAGRAIYATGQIIGDIRQAHCNISETDWNDTLSKIVEKLREKFGKDKTIIFNQSSGGDMEIETHSFNCGGEFFYCNTTRLFNSTWSVNGTSINGTKNITLPCRIKQIINRWQEVGKAMYAPPISGIIRCSSNITGLILTRDGGTNNSTEETETFRPGGGNMKDNWRSELYKYKVVKIEPLGVAPTKAQRRVVQREKRAIGALGAMFLGFLGAAGSTMGAASLTLTVQARQLLSGIVQQQNNLLRAIEAQQHMLQLTVWGIKQLQARVLSVERYLQDQQLLGIWGCSGKLICTTTVPWNTSWSNKSYDTIWDNMTWMQWDREIQNYTGKIYNLLEESQIQQEKNEKELLELDQWANLWNWFSITKWLWYIKIFIMIVGGLVGLKIIFAVFSIVNRVRQGYSPLSLQTLLPTPRGPDRPEGIEEEGGERDRGRSGRLVTGFLPLIWDDLRSLCLFSYHHLRDLLLIVLRTVQVLGHRGWEILKYWWSLLQYWIQELKNSAVSLLNTIAIAVAEGTDRVIEVGQRIGRAFLHIPRRIRQGLERALQ*", "nucleotides": "ATGAGAGCGAAGGGGATCAGGAAGAATTGTCAGCACTTGTGGTGGAAATGGGGCACGATGCTCCTTGGGATGTTGATGATCTGTAGTGCTGCGGAAAATTTGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAGAGATGCAAATACCACTCTATTCTGTGCATCAGATGCTAAAGCATATGATACAGAAGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCTAACCCACATGAAGTAGAATTGAAAAATGTGACAGAAAATTTTAATATGTGGAAAAATAACATGGTGGACCAGATGCATGAGGATATAATCAATTTATGGGATCAAAGCCTAAAGCCATGTGCAAAATTGACCCCACTCTGTGTTACTTTAAATTGCACTGATTTAAGAAATGATACTGTAGGAAATCAAACAAATCTCACTGAAACTAATACAATACAGGGAAGAGAAATGACAAACTGCTCTTTCAATATCACCACAGAGATAAGAGATAAAGTGCGAAAAGAACATGCACTTTTTTATAAACTTGATGTCATGCCAATAGATAGGGATAATACAAGTTATACATTGATAAATTGCAATACCTCAGTCATTACACAGGCCTGTCCAAAGGTAACCTTTGAACCAATTCCCATACATTATTGTACTCCAGCTGGTTTTGCAATTCTAAAGTGTAAGGATGAGATGTTCAATGGAACAGGACCATGTAAGAATGTCAGCACAGTACAATGTACACATGGAATTAGACCAGTAGTGTCAACTCAACTACTGTTAAATGGTAGCCTAGCAGAAAAAGAGATAGTACTTAGATCTGAAAATTTCACAGACAATGGTAAAAATATAATAGTACAGCTAAATAGATCTATAGTAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAGTGTAGCAGGGAGAGCAATTTATGCAACAGGGCAGATAATAGGAGATATAAGACAAGCACATTGTAACATCAGTGAGACAGATTGGAATGACACTTTAAGCAAAATAGTTGAAAAATTAAGGGAAAAATTTGGAAAAGATAAAACAATAATCTTTAATCAATCATCAGGAGGGGACATGGAAATTGAAACGCACAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAACACAACACGACTGTTTAATAGTACTTGGAGTGTTAATGGAACTAGCATAAACGGAACTAAAAATATCACACTCCCGTGCAGAATAAAACAAATTATAAACAGGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCTATCAGTGGGATAATTAGGTGCTCATCAAATATTACAGGACTAATATTAACAAGAGATGGTGGTACAAATAATAGTACAGAGGAGACGGAGACCTTCAGACCTGGAGGGGGAAATATGAAGGACAATTGGAGAAGTGAATTATATAAATACAAAGTAGTAAAAATTGAGCCATTAGGAGTAGCACCCACCAAGGCACAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAATAGGAGCGTTAGGAGCTATGTTCCTCGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCACTGACGCTGACGGTACAAGCCAGACAATTATTGTCTGGTATAGTGCAACAGCAGAACAATCTGCTGAGGGCTATTGAGGCGCAACAGCATATGTTGCAACTCACAGTCTGGGGCATCAAACAGCTCCAGGCAAGAGTCCTGTCTGTGGAAAGATACCTACAGGATCAACAGCTCCTGGGGATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTACTGTGCCTTGGAATACTAGTTGGAGCAATAAATCTTACGATACCATCTGGGATAACATGACCTGGATGCAGTGGGACAGAGAAATTCAAAATTACACAGGGAAAATATACAACTTACTTGAGGAATCGCAAATCCAACAGGAAAAGAATGAAAAGGAATTATTAGAACTAGATCAATGGGCAAATTTGTGGAATTGGTTTAGTATAACAAAATGGCTGTGGTATATAAAAATATTCATAATGATAGTAGGAGGCTTAGTAGGTTTAAAAATAATTTTTGCTGTATTTTCTATAGTGAATAGAGTTAGGCAGGGATACTCACCATTATCATTGCAGACCCTCCTCCCAACCCCGAGGGGACCAGACAGGCCCGAAGGAATAGAAGAAGAAGGTGGAGAGAGAGACAGAGGCAGATCCGGAAGATTAGTGACTGGATTCTTACCACTCATCTGGGACGACCTGCGGAGCCTGTGCCTCTTCAGCTACCACCACTTGAGAGACTTACTCTTGATTGTGCTGAGGACTGTGCAAGTTCTGGGACACAGGGGGTGGGAGATCCTCAAGTACTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAACTAAAGAATAGTGCTGTTAGCTTGCTCAATACCATAGCTATCGCAGTAGCTGAGGGAACAGATAGGGTTATAGAGGTAGGACAAAGAATTGGCAGAGCTTTTCTCCACATACCTAGAAGGATAAGACAGGGATTAGAAAGGGCTTTGCAATAA" @@ -639,7 +639,7 @@ "subtype_start": 8376, "subtype_end": 8469, "orientation": "forward", - "distance": 0.3999999999999999, + "distance": 0.3921568627450981, "protein": "RPSSQPRGDQTGPKE", "aminoacids": "RPSSQPRGDQTGPKE*KKKVERETEADPED**", "nucleotides": "AGACCCTCCTCCCAACCCCGAGGGGACCAGACAGGCCCGAAGGAATAGAAGAAGAAGGTGGAGAGAGAGACAGAGGCAGATCCGGAAGATTAGTGA" @@ -651,7 +651,7 @@ "subtype_start": 8377, "subtype_end": 8653, "orientation": "forward", - "distance": 0.46153846153846145, + "distance": 0.4267425320056898, "protein": "DPPPNPEGTRQARRNRRRRWRERQRQIRKISDWILTTHLGRPAEPVPLQLPPLERLTLDCAEDCASSGTQGVGDPQVLVESPAVLDSGTKE", "aminoacids": "DPPPNPEGTRQARRNRRRRWRERQRQIRKISDWILTTHLGRPAEPVPLQLPPLERLTLDCAEDCASSGTQGVGDPQVLVESPAVLDSGTKE*", "nucleotides": "GACCCTCCTCCCAACCCCGAGGGGACCAGACAGGCCCGAAGGAATAGAAGAAGAAGGTGGAGAGAGAGACAGAGGCAGATCCGGAAGATTAGTGACTGGATTCTTACCACTCATCTGGGACGACCTGCGGAGCCTGTGCCTCTTCAGCTACCACCACTTGAGAGACTTACTCTTGATTGTGCTGAGGACTGTGCAAGTTCTGGGACACAGGGGGTGGGAGATCCTCAAGTACTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAACTAAAGAATAG" @@ -663,7 +663,7 @@ "subtype_start": 8796, "subtype_end": 9417, "orientation": "forward", - "distance": 0.5260162601625942, + "distance": 0.4589954597048772, "protein": "MGGKWSKGCMAGWPTVRERMERIDPRPAARREQAEPAAAGVGAASRDLEKYGAITSSNTSTTNAACAWLEAQEEEEVGFPVRPQVPLRPMTYKAALDLSHFLKEKGGLEGLIWSQRRQEILDLWVYHTQGYFPDWQNYTPGPGVRFPLTFGWCFKLVPVDPDQVEKANEGENNCLLHPMSLHGMEDSEGEVLMWKFDSSLAFHHRAREQHPEYYKDC", "aminoacids": "MGGKWSKGCMAGWPTVRERMERIDPRPAARREQAEPAAAGVGAASRDLEKYGAITSSNTSTTNAACAWLEAQEEEEVGFPVRPQVPLRPMTYKAALDLSHFLKEKGGLEGLIWSQRRQEILDLWVYHTQGYFPDWQNYTPGPGVRFPLTFGWCFKLVPVDPDQVEKANEGENNCLLHPMSLHGMEDSEGEVLMWKFDSSLAFHHRAREQHPEYYKDC*H*", "nucleotides": "ATGGGTGGCAAGTGGTCAAAAGGTTGTATGGCTGGATGGCCTACTGTAAGGGAAAGAATGGAAAGAATTGATCCAAGGCCTGCTGCAAGGAGGGAACAAGCTGAGCCAGCAGCAGCTGGGGTAGGAGCAGCATCTCGAGACTTGGAAAAATATGGAGCAATCACAAGTAGCAATACATCAACTACTAATGCTGCTTGTGCCTGGCTAGAAGCACAAGAGGAGGAGGAAGTAGGCTTTCCAGTCAGACCTCAGGTACCTTTAAGACCAATGACTTACAAAGCAGCTTTGGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTGGTCCCAGAGAAGACAAGAAATCCTTGATTTGTGGGTTTACCACACACAAGGATACTTCCCTGATTGGCAAAACTACACACCAGGACCAGGGGTCAGATTTCCACTGACCTTTGGATGGTGCTTCAAGCTAGTACCAGTTGATCCAGACCAAGTAGAGAAGGCCAATGAAGGAGAGAACAACTGCTTGCTACACCCTATGAGCCTGCATGGGATGGAAGACTCAGAGGGAGAAGTGTTAATGTGGAAGTTTGACAGCAGCCTGGCGTTTCATCATAGAGCCCGAGAACAACATCCGGAGTACTACAAAGACTGCTGACACTGA" @@ -677,7 +677,7 @@ "subtype_start": 789, "subtype_end": 2292, "orientation": "forward", - "distance": 2.1734000000000018, + "distance": 0.7780482566048544, "protein": "MQTQIVRPF", "aminoacids": "MFCTIG*FWLTWLLFPGSAAACCVFFLLLFCSSSILSKASLVSFISIL*CTQ*RTATVLNNDLSSSDPV*SAGCSCPSICLQPSDVSNRPGLTANRSSSLLAHTICFNLYLFFPPGLNRIFSHLSNSPPLNTDALAPISLLLASASQKGVLTVRRPSPLAVRASASRVR*FWD*IK**ECIVLPAFWT*DKDQRNPLETM*IGSIKL*EPSKLHRR*KIG*QKPCWSRMQTQIVRPF*KHWVQQLH*KK**QHAREWEDPAIRQEFWRKQ*AK*QTQLP**CRKAILGAKERWLSVSIVAKKGT*PEIAGPLGKGAVGNVERKDTK*KIVLRDRQIF*GKSGLPTRGGQGTFLKAEQNQQPHQRRASVLGRRQQLLLRSRSR*TRNYTLCLPSNHSLATTLSHSKDRGATKGSSIRYRSR*", "nucleotides": "ATGTTCTGCACTATAGGGTAATTTTGGCTGACCTGGTTGCTATTTCCTGGGTCAGCTGCTGCTTGCTGTGTCTTTTTCTTACTTTTGTTTTGTTCTTCCTCTATCTTGTCTAAAGCTTCCTTGGTGTCTTTTATCTCTATCCTTTGATGCACACAATAGAGGACTGCTACTGTATTAAATAATGATTTAAGTTCCTCTGATCCTGTCTGAAGTGCTGGTTGTAGCTGTCCCAGTATTTGTCTACAGCCTTCTGATGTTTCTAACAGGCCAGGATTAACTGCGAATCGTTCCAGTTCCCTGCTTGCCCATACTATATGTTTTAACTTATATCTTTTCTTTCCCCCTGGCCTTAACCGAATTTTCTCCCATTTGTCTAATTCTCCCCCGCTTAATACCGACGCTCTCGCACCCATCTCTCTCCTTCTAGCCTCCGCTAGTCAAAAAGGCGTACTCACCGTTCGCCGCCCCTCGCCTCTTGCTGTGCGCGCTTCAGCAAGCCGAGTCCGATAATTCTGGGATTAAATAAAATAGTAAGAATGTATAGTCCTACCAGCATTCTGGACATAAGACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGATCGGTTCTATAAAACTCTAAGAGCCGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAGAATGCAAACCCAGATTGTAAGACCATTTTAAAAGCATTGGGTCCAGCAGCTACACTAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCCGGCCATAAGGCAAGAGTTTTGGCGGAAGCAATGAGCCAAGTAACAAACTCAGCTTCCGTGATGATGCAGAAAGGCAATTTTAGGAGCCAAAGAAAGATGGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGGAAAAGGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGATTGTACTGAGAGACAGGCAAATTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGGAGGCCAGGGAACTTTCCTCAAAGCAGAACAGAACCAACAGCCCCACCAGAGGAGAGCTTCAGTTTTGGGGAGAAGACAACAACTCCTTCTCAGAAGCAGGAGCCGATAGACCAGGAACTATACCCTCTGTCTTCCCTCAAATCACTCTTTGGCAACGACCCTTAGTCACAGTAAGGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGA" @@ -689,7 +689,7 @@ "subtype_start": 2084, "subtype_end": 5096, "orientation": "forward", - "distance": 0.18823529411764706, + "distance": 0.23289665211062593, "protein": "FFRENLAFPQGEARELSSKQNRTNSPTRGELQFWGEDNNSFSEAGADRPGTIPSVFPQITLWQRPLVTVRIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVKQYDQISVEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPRVKQWPLTEEKIKALTEICKEMEKEGKISKIGPENPYNTPIFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKVEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGAKALTEVVPLTEEAELELAENREILKEPVHGVYYDPTKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWESWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIIGAETFYVDGAANRETKSGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIQKEKVYLAWVPAHKGIGGNEQVDKLVSSGIRKVLFLDGIDKAQDEHEKYHSNWRAMASDFNIPPVVAKEIVACCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPNFTSNAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKQLKQIIGQVREQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDGCVASRQDED", "aminoacids": "FFRENLAFPQGEARELSSKQNRTNSPTRGELQFWGEDNNSFSEAGADRPGTIPSVFPQITLWQRPLVTVRIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVKQYDQISVEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPRVKQWPLTEEKIKALTEICKEMEKEGKISKIGPENPYNTPIFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKVEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGAKALTEVVPLTEEAELELAENREILKEPVHGVYYDPTKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWESWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIIGAETFYVDGAANRETKSGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIQKEKVYLAWVPAHKGIGGNEQVDKLVSSGIRKVLFLDGIDKAQDEHEKYHSNWRAMASDFNIPPVVAKEIVACCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPNFTSNAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKQLKQIIGQVREQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDGCVASRQDED*", "nucleotides": "TTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGGAGGCCAGGGAACTTTCCTCAAAGCAGAACAGAACCAACAGCCCCACCAGAGGAGAGCTTCAGTTTTGGGGAGAAGACAACAACTCCTTCTCAGAAGCAGGAGCCGATAGACCAGGAACTATACCCTCTGTCTTCCCTCAAATCACTCTTTGGCAACGACCCTTAGTCACAGTAAGGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTGTTAGAAGAAATGAGTTTACCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGCTTTATCAAAGTAAAACAGTATGATCAGATATCAGTAGAAATTTGTGGACATAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAATATAATTGGAAGAAATCTGTTGACTCAGATTGGTTGTACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAGAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAACAGAAATTTGTAAGGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAATATTTGCTATAAAGAAAAAAGACAGTACTAAATGGAGAAAGTTAGTAGATTTTAGAGAACTTAATAAGAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACACCCCGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCCTAGATGAAGACTTCAGGAAGTATACTGCATTTACCATACCTAGTACAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTACTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGACATAGTTATATATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAGTAGAGGAACTGAGACAACATCTGTTGAAGTGGGGGTTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTTCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATACAACTGCCAGAGAAAGACAGCTGGACTGTCAATGATATACAGAAATTAGTGGGAAAGTTGAATTGGGCAAGTCAGATTTATCCAGGGATTAAAGTAAGGCAGTTATGTAAACTACTTAGAGGAGCCAAGGCGCTGACAGAAGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATCCTAAAAGAACCAGTACATGGAGTGTATTATGACCCAACAAAAGACTTAATAGCAGAAATACAGAAGCAGGGGCAAGGTCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAACTTGAAAACAGGAAAATATGCAAGAACAAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAGCCACAGAAAGCATAGTAATATGGGGAAAGACCCCTAAATTTAGACTACCCATTCAAAAAGAAACATGGGAATCATGGTGGACAGAATATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAAAAAGAACCCATAATAGGAGCAGAGACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACAAAATCAGGAAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAAGTTATCTCCCTAACTGACACAACAAATCAGAAGACTGAGTTACAAGCAATTCATCTAGCTTTGCAGGATTCAGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAGGCACAACCAGATAAAAGCGAATCAGAGTTAGTCAATCAAATAATAGAGCAATTAATACAAAAGGAAAAGGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGGGGAAATGAACAAGTAGATAAATTAGTCAGTTCTGGAATCAGAAAGGTACTATTTTTGGATGGAATAGATAAAGCCCAAGATGAGCATGAAAAATATCACAGTAATTGGAGAGCAATGGCTAGTGACTTTAACATACCACCTGTAGTAGCAAAAGAAATAGTAGCCTGCTGTGATAAATGTCAGCTAAAAGGAGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAATTAGATTGTACACATTTAGAAGGAAAAATTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGACAGGAAACAGCATACTTTCTCTTAAAATTAGCAGGAAGATGGCCAGTAACAACAATACATACAGACAATGGCCCCAACTTCACCAGTAATGCAGTTAAGGCCGCCTGTTGGTGGGCAGGGGTCAAACAAGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTCGTAGAATCTATGAATAAACAATTAAAACAAATTATAGGACAGGTAAGAGAGCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAATAGACATAATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAGGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTGGTAATACAAGATAATAGTGACATAAAAGTAGTACCAAGAAGAAAAGCAAAAATTATTAGGGATTATGGAAAACAGATGGCAGGTGATGGTTGTGTGGCAAGTAGACAGGATGAGGATTAG" @@ -701,7 +701,7 @@ "subtype_start": 5040, "subtype_end": 5619, "orientation": "forward", - "distance": 0.41770833333333335, + "distance": 0.4025296125276049, "protein": "MENRWQVMVVWQVDRMRISMWKSLVKYHIHNSGKARGWCYRHHYESRHPRISSEVHIPLGGEARLVVTTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPDLADQLIHLYYFNCFSESAIRQAILGHRVSPRCEYQAGHNKVGSLQYLALIALIPPKRKKPPLPSVRKLTEDRWKEPQRTKGHRESHTMNGH", "aminoacids": "MENRWQVMVVWQVDRMRISMWKSLVKYHIHNSGKARGWCYRHHYESRHPRISSEVHIPLGGEARLVVTTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPDLADQLIHLYYFNCFSESAIRQAILGHRVSPRCEYQAGHNKVGSLQYLALIALIPPKRKKPPLPSVRKLTEDRWKEPQRTKGHRESHTMNGH*NF*", "nucleotides": "ATGGAAAACAGATGGCAGGTGATGGTTGTGTGGCAAGTAGACAGGATGAGGATTAGCATGTGGAAAAGCTTAGTAAAATACCATATACATAATTCAGGGAAGGCTAGGGGATGGTGTTATAGACATCACTATGAAAGCAGACATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGAGGAGAGGCTAGACTAGTAGTGACAACATATTGGGGACTGCATACAGGAGAAAGAGACTGGCATTTGGGTCAAGGAGTCTCCATAGAATGGAGGAAAAGGAGATATAGCACACAAGTAGACCCTGACCTAGCAGACCAACTAATTCATCTGTATTATTTTAATTGTTTTTCAGAATCTGCTATAAGACAAGCCATATTAGGACATAGAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAATAAGGTAGGATCTCTGCAGTACTTGGCACTAATAGCATTAATACCACCAAAAAGGAAAAAGCCACCTTTGCCTAGTGTGAGGAAACTGACAGAGGATAGATGGAAAGAGCCCCAGAGGACCAAGGGCCACAGAGAGAGCCATACAATGAATGGACACTAGAACTTTTAG" @@ -713,7 +713,7 @@ "subtype_start": 5558, "subtype_end": 5850, "orientation": "forward", - "distance": 0.44230769230769296, + "distance": 0.41636495293265796, "protein": "MERAPEDQGPQREPYNEWTLELLEELKREAVRHFPRAWLHGLGQHIYETYGDTWAGVEALIRILQQLVFIHFRIGCQHSRIGILTHRRARNGASRS", "aminoacids": "MERAPEDQGPQREPYNEWTLELLEELKREAVRHFPRAWLHGLGQHIYETYGDTWAGVEALIRILQQLVFIHFRIGCQHSRIGILTHRRARNGASRS*T", "nucleotides": "ATGGAAAGAGCCCCAGAGGACCAAGGGCCACAGAGAGAGCCATACAATGAATGGACACTAGAACTTTTAGAAGAGCTTAAAAGAGAAGCTGTTAGGCACTTTCCTAGGGCTTGGCTTCATGGCCTAGGACAACATATCTATGAAACTTATGGAGATACTTGGGCAGGAGTGGAAGCTCTAATAAGAATTCTGCAACAACTGGTGTTTATTCATTTCAGAATTGGATGTCAGCACAGCAGGATAGGCATTCTTACCCATAGAAGAGCAAGAAATGGAGCCAGTAGATCCTAGACT" @@ -725,7 +725,7 @@ "subtype_start": 5830, "subtype_end": 6045, "orientation": "forward", - "distance": 0.5833333333333333, + "distance": 0.484764542936288, "protein": "MEPVDPRLEPWKHPGSQPRTACTSCYCKKCCYHCPRCFLTKGLGISYGRKKRRQRRRTPQDSRNHQVSLSKQ", "aminoacids": "MEPVDPRLEPWKHPGSQPRTACTSCYCKKCCYHCPRCFLTKGLGISYGRKKRRQRRRTPQDSRNHQVSLSKQ", "nucleotides": "ATGGAGCCAGTAGATCCTAGACTGGAGCCCTGGAAGCATCCAGGGAGTCAGCCTAGGACTGCGTGCACCAGTTGCTATTGTAAAAAGTGTTGCTATCATTGCCCGCGATGCTTCTTAACAAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAACTCCTCAGGATAGCCGGAACCATCAAGTTTCTTTATCAAAGCAG" @@ -737,7 +737,7 @@ "subtype_start": 5969, "subtype_end": 6045, "orientation": "forward", - "distance": 0.723076923076923, + "distance": 0.538373424971363, "protein": "MAGRSGDSDEELLRIAGTIKFLYQSS", "aminoacids": "MAGRSGDSDEELLRIAGTIKFLYQSS", "nucleotides": "ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAACTCCTCAGGATAGCCGGAACCATCAAGTTTCTTTATCAAAGCAGT" @@ -749,7 +749,7 @@ "subtype_start": 6061, "subtype_end": 6310, "orientation": "forward", - "distance": 0.7073170731707319, + "distance": 0.5328923190003676, "protein": "MQSLEILAIVALVVAFIIAIVVWSIVLIEYRKIRRQKRIDRILDRIRERAEDSGNESEGDQEELAALVEMGNHAHLDMGHHAPWDVNDL", "aminoacids": "MQSLEILAIVALVVAFIIAIVVWSIVLIEYRKIRRQKRIDRILDRIRERAEDSGNESEGDQEELAALVEMGNHAHLDMGHHAPWDVNDL*", "nucleotides": "ATGCAATCTTTAGAAATATTAGCAATAGTAGCATTAGTAGTAGCATTTATAATAGCAATAGTCGTTTGGTCTATAGTACTCATAGAATATAGGAAAATAAGAAGACAAAAGAGAATAGACAGGATACTTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGGGACCAAGAAGAATTGGCAGCCCTCGTGGAGATGGGGAACCATGCTCATTTGGATATGGGCCACCATGCTCCTTGGGATGTCAATGACCTGTAA" @@ -761,7 +761,7 @@ "subtype_start": 6224, "subtype_end": 8795, "orientation": "forward", - "distance": 0.5484813084112157, + "distance": 0.4693967327188021, "protein": "MRVKGTKKNWQPSWRWGTMLIWIWATMLLGMSMTCNAEDSWVTVYYGVPVWKEAATTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVELNVTENFNAWKNNMVDQMHEDIISLWDQSLKPCVKLTPLCVTLNCTNINSTNINNTNSIEREMTNCSFNVTTVIRDKVQKQYALFYKLDVVQIKDDNTSYNTSYRLINCNSSTITQACPKVSFEPIPIHYCAPAGFAILKCKDKNFNGTGLCKNVSTVQCTHGIRPVVSTQLLLNGSLAEGDVVIRSKNFSNSAQTIIVQLNETVEINCTRPNNNTRRSIHIGPGRAFYATGDIIGDIRQAHCNISRAKWNETLKKIADKLREQFKRETIVFNQSSGGDPEIVMHSFNCRGEFFYCNTTQLFNSTWNSTTGVNGTGANNTEVNIITLPCKIRQIVNMWQEVGKAMYAPPISGQISCSSNITGLLLLRDGGNSNDTDNTTEIFRPGGGDMRDNWRSELYKYKVVQIEPLGVAPTKARRRVVQREKRAVGIGALFLGFLGAAGSTMGAASITLTVQARHLLSGIVQQQNNLLRAIEAQQHMLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTNVPWNSSWSNKNLSYIWNNMTWMQWEKEIDNYTEEIYNLIEQSQNQQEKNEQELLELDKWASLWNWFDITKWLWYIKIFIMIVGGLIGLRIVFTVLSIVNRVRQGYSPLSFQTLLPAARGPDRPEGIGEEGGERDRDRSSHLAHGFLTIIWVDLRSLFLFSYHHLRDLLLIVARGVELLGRRGWEALKYWWNLLQYWSQELKNSAVSLLNATAIAVAEGTDRFIEVLQRIFRAIIHIPTRIRQGLERALL", "aminoacids": "MRVKGTKKNWQPSWRWGTMLIWIWATMLLGMSMTCNAEDSWVTVYYGVPVWKEAATTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVELNVTENFNAWKNNMVDQMHEDIISLWDQSLKPCVKLTPLCVTLNCTNINSTNINNTNSIEREMTNCSFNVTTVIRDKVQKQYALFYKLDVVQIKDDNTSYNTSYRLINCNSSTITQACPKVSFEPIPIHYCAPAGFAILKCKDKNFNGTGLCKNVSTVQCTHGIRPVVSTQLLLNGSLAEGDVVIRSKNFSNSAQTIIVQLNETVEINCTRPNNNTRRSIHIGPGRAFYATGDIIGDIRQAHCNISRAKWNETLKKIADKLREQFKRETIVFNQSSGGDPEIVMHSFNCRGEFFYCNTTQLFNSTWNSTTGVNGTGANNTEVNIITLPCKIRQIVNMWQEVGKAMYAPPISGQISCSSNITGLLLLRDGGNSNDTDNTTEIFRPGGGDMRDNWRSELYKYKVVQIEPLGVAPTKARRRVVQREKRAVGIGALFLGFLGAAGSTMGAASITLTVQARHLLSGIVQQQNNLLRAIEAQQHMLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTNVPWNSSWSNKNLSYIWNNMTWMQWEKEIDNYTEEIYNLIEQSQNQQEKNEQELLELDKWASLWNWFDITKWLWYIKIFIMIVGGLIGLRIVFTVLSIVNRVRQGYSPLSFQTLLPAARGPDRPEGIGEEGGERDRDRSSHLAHGFLTIIWVDLRSLFLFSYHHLRDLLLIVARGVELLGRRGWEALKYWWNLLQYWSQELKNSAVSLLNATAIAVAEGTDRFIEVLQRIFRAIIHIPTRIRQGLERALL*NGRHILKT*", "nucleotides": "ATGAGAGTGAAGGGGACCAAGAAGAATTGGCAGCCCTCGTGGAGATGGGGAACCATGCTCATTTGGATATGGGCCACCATGCTCCTTGGGATGTCAATGACCTGTAATGCAGAGGACTCGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAAAGAAGCAGCCACCACTCTATTTTGTGCATCAGATGCCAAAGCATATGACACAGAGGTACACAATGTCTGGGCCACACATGCTTGTGTACCCACAGACCCCAACCCACAAGAAGTAGAATTAAATGTAACAGAAAATTTTAATGCATGGAAAAATAACATGGTAGATCAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAACTGCACTAACATCAATAGCACTAATATAAACAATACCAATAGTATAGAAAGAGAAATGACAAACTGCTCTTTTAATGTCACCACAGTCATAAGAGATAAGGTGCAAAAACAATATGCACTTTTTTATAAACTTGATGTAGTACAAATTAAGGATGATAATACCAGCTATAATACCAGCTATAGGTTGATAAATTGTAACTCCTCAACCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAGGATAAGAATTTCAATGGAACAGGACTATGTAAAAATGTTAGCACAGTACAATGTACACATGGAATTAGGCCAGTAGTATCAACTCAACTGTTGTTAAATGGCAGTCTAGCAGAAGGAGATGTAGTAATTAGATCTAAAAATTTCTCTAACAGTGCTCAAACCATAATAGTACAATTAAACGAAACTGTAGAAATTAATTGTACAAGACCCAACAATAATACAAGAAGAAGTATACATATAGGACCAGGGAGAGCATTTTATGCAACAGGAGACATAATAGGAGATATAAGACAAGCACATTGTAACATTAGTAGAGCAAAATGGAATGAGACTTTAAAAAAGATAGCTGATAAATTAAGGGAACAATTTAAAAGAGAGACAATAGTCTTTAACCAATCCTCAGGAGGGGACCCAGAGATTGTAATGCACAGTTTTAATTGTAGAGGGGAATTTTTCTACTGTAATACAACACAACTGTTTAATAGTACTTGGAATAGTACTACAGGAGTAAATGGTACAGGAGCAAATAACACAGAAGTAAATATTATCACACTCCCATGCAAGATAAGGCAAATTGTAAACATGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCATCAGTGGACAAATTAGTTGTTCATCAAATATTACAGGGCTACTACTACTAAGAGATGGTGGTAATAGCAATGACACGGATAACACGACTGAAATCTTCAGACCTGGAGGAGGAGATATGAGGGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTACAAATTGAACCATTAGGAGTAGCACCCACCAAGGCAAGGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTCTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCATCAATAACGCTGACGGTACAAGCCAGACATTTATTGTCTGGTATAGTGCAACAGCAGAACAATTTGCTGAGAGCTATTGAGGCGCAACAGCATATGTTGCAGCTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTAGAAAGATACCTTAAGGATCAACAGCTCCTGGGGATTTGGGGTTGCTCTGGAAAACTCATCTGCACCACTAATGTGCCTTGGAATAGTAGTTGGAGTAATAAAAATCTGAGTTACATTTGGAATAACATGACCTGGATGCAGTGGGAAAAAGAAATTGACAATTACACAGAGGAAATATACAACTTAATTGAACAATCGCAAAACCAGCAAGAAAAGAATGAACAAGAATTATTGGAATTGGATAAATGGGCAAGTTTGTGGAATTGGTTTGACATAACAAAGTGGCTGTGGTATATAAAAATATTTATAATGATAGTAGGAGGCTTAATAGGTTTAAGAATAGTTTTTACTGTACTTTCTATAGTGAATAGAGTTAGGCAGGGATACTCACCATTATCGTTTCAGACCCTCCTCCCAGCCGCGAGGGGACCCGACAGGCCCGAAGGAATCGGAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCAGTCACTTAGCGCATGGATTCTTAACAATTATCTGGGTCGACCTGCGGAGCCTGTTCCTCTTCAGTTACCACCACTTGAGAGACTTACTCTTGATTGTAGCGAGGGGTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAGTATTGGTGGAATCTCCTGCAGTATTGGAGCCAGGAACTAAAGAATAGTGCTGTCAGCTTGCTCAACGCCACAGCCATAGCAGTAGCTGAGGGGACAGATAGGTTTATAGAAGTATTGCAAAGAATTTTTAGAGCTATTATCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCTTTGCTATAAAATGGGAGGCATATTCTCAAAACGTAA" @@ -773,7 +773,7 @@ "subtype_start": 8376, "subtype_end": 8469, "orientation": "forward", - "distance": 0.4866666666666659, + "distance": 0.439759036144578, "protein": "RPSSQPRGDPTGPKESEKKVERETETDPVT", "aminoacids": "RPSSQPRGDPTGPKESEKKVERETETDPVT*", "nucleotides": "AGACCCTCCTCCCAGCCGCGAGGGGACCCGACAGGCCCGAAGGAATCGGAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCAGTCACTTAG" @@ -785,7 +785,7 @@ "subtype_start": 8377, "subtype_end": 8653, "orientation": "forward", - "distance": 0.46153846153846145, + "distance": 0.4267425320056898, "protein": "DPPPSREGTRQARRNRRRRWRERQRQIQSLSAWILNNYLGRPAEPVPLQLPPLERLTLDCSEGCGTSGTQGVGSPQVLVESPAVLEPGTKE", "aminoacids": "DPPPSREGTRQARRNRRRRWRERQRQIQSLSAWILNNYLGRPAEPVPLQLPPLERLTLDCSEGCGTSGTQGVGSPQVLVESPAVLEPGTKE*", "nucleotides": "GACCCTCCTCCCAGCCGCGAGGGGACCCGACAGGCCCGAAGGAATCGGAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCAGTCACTTAGCGCATGGATTCTTAACAATTATCTGGGTCGACCTGCGGAGCCTGTTCCTCTTCAGTTACCACCACTTGAGAGACTTACTCTTGATTGTAGCGAGGGGTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAGTATTGGTGGAATCTCCTGCAGTATTGGAGCCAGGAACTAAAGAATAG" @@ -797,7 +797,7 @@ "subtype_start": 8796, "subtype_end": 9417, "orientation": "forward", - "distance": 0.6943089430894234, + "distance": 0.5282692069776047, "protein": "MGGIFSKRNGGGWPAIRERMRRAQPAADGVGAASRDLERHGALTSNNTSANNADCAWLEAQEEGEEVGFPVRPQVPLRPMTYKGAVDLSHFLKEKGGLEGLIYSQQRQDILDLWVYNTQGYFPDWQNYTPGPGIRYPLTFGWCFKLVPMEPEDVEKATEGEDNILLHPVNQHGMDDSEREVLVWKFDSRLAFRHVAREIHPEYYKNC", "aminoacids": "MGGIFSKRNGGGWPAIRERMRRAQPAADGVGAASRDLERHGALTSNNTSANNADCAWLEAQEEGEEVGFPVRPQVPLRPMTYKGAVDLSHFLKEKGGLEGLIYSQQRQDILDLWVYNTQGYFPDWQNYTPGPGIRYPLTFGWCFKLVPMEPEDVEKATEGEDNILLHPVNQHGMDDSEREVLVWKFDSRLAFRHVAREIHPEYYKNC*", "nucleotides": "ATGGGAGGCATATTCTCAAAACGTAATGGGGGTGGGTGGCCTGCAATAAGGGAAAGAATGAGACGAGCTCAGCCAGCAGCAGATGGGGTAGGAGCAGCATCTCGAGACCTGGAAAGACATGGAGCTCTCACAAGTAACAATACATCAGCTAACAATGCTGATTGTGCCTGGCTGGAAGCACAGGAAGAGGGGGAAGAAGTGGGTTTCCCAGTCAGACCTCAGGTACCTTTAAGACCAATGACATACAAGGGAGCTGTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGTTAATTTACTCCCAACAAAGACAAGATATCCTTGATCTGTGGGTCTACAACACACAGGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGATAAGATATCCACTGACCTTTGGATGGTGCTTCAAGCTAGTACCAATGGAACCAGAGGATGTAGAAAAGGCCACTGAAGGAGAGGACAACATCTTGTTACACCCTGTGAACCAGCATGGGATGGACGACTCAGAGAGAGAAGTGTTAGTGTGGAAGTTTGACAGCCGCCTAGCATTCCGTCACGTGGCCCGAGAGATACATCCGGAGTACTACAAGAACTGCTGA" @@ -811,7 +811,7 @@ "subtype_start": 789, "subtype_end": 2292, "orientation": "forward", - "distance": 0.2571999999999999, + "distance": 0.2932056543547651, "protein": "MGARASILSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWTTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSANVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE", "aminoacids": "MGARASILSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWTTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSANVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE*R*", "nucleotides": "ATGGGTGCGAGAGCGTCAATATTAAGCGGGGGAAAATTAGATGCATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATTTAGTATGGGCAAGCAGGGAGCTAGAACGATTTGCCGTTAACCCTGGCCTGTTAGAAACATCAGAGGGATGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATTTAATGCAGTAGCAGTCCTCTATTGTGTACATCAAAGGATACAGGTACAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGTAGCAGCAGCTGACACTGACACAGGAAACAGCAGCCAAAATTACCCCATAGTGCAGAACCTCCAGGGGCAAATGGTACATCAGCCCCTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAAAAGGCCTTCAGCCCAGAAGTCATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGACGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCTTGGGATTAAATAAAATAGTAAGGATGTATAGCCCTACCAGTATTCTGGATATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAGAACTTTAAGAGCTGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATTCGAATCCAGATTGTAAGACTATTTTAAAAGCATTAGGACCAGCAGCAACACTAGAGGAAATGATGACAGCATGTCAAGGAGTGGGGGGACCAGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAAATTCAGCTAATGTAATGATGCAGAGAGGCAATTTTAGAAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACATCAAATGAAAGACTGTACAGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAG" @@ -823,7 +823,7 @@ "subtype_start": 2084, "subtype_end": 5096, "orientation": "forward", - "distance": 0.14755732801595212, + "distance": 0.1922427454342348, "protein": "FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSTGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED", "aminoacids": "FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSTGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*", "nucleotides": "TTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAGGGGGGCAATTTAAAGAAGCTTTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACCCATAGAAATCTGTGGACACAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGCTTGGTTGTACCTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTCAATAAGAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAATTCCCTTAGATAAAGAATTCAGGAAGTATACTGCATTTACCATACCTAGTACAAATAATGAGACACCAGGGATTAGGTATGAGTACAATGTGCTGCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGCAAAATCCAGATATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAACTGAGACAACATCTGTTAAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAGTGGACAGTACAGCCTATAATACTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTACGCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAGGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTTTAAGAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGCAATGGACAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTACAAAAGATAGCCACAGAAAGCATAGTAATATGGGGAAAAACTCCTAAATTTAGACTACCTATACAAAAAGAAACATGGGAGACATGGTGGGCAGAGTACTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAATTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACTAAATTAGGCAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAGGTTATCTCCCTAACGGACACAACAAATCAAAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATCAGAAGTAAACATAGTAACAGACTCACAATATACATTAGGAATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAATCAGATAATAGAGCAGTTAATAAAAAAGGAAAAAGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGACAAACTAGTCAGTACTGGAGTCAGGAGAGTACTATTTCTAGATGGAATAGATAAGGCCCAAGAAGACCATGAGAAATATCACAGTAATTGGAGAGCAATGGCTGGTGATTTTAATATACCCCCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCAAAAAGGAGAGGCCATGCATGGACAAGTAGATTGTAGTCCAGGAATATGGCAACTAGATTGTACACATCTAGAAGGGAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTCTCCTGAAACTAGCAGGGAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTAATGTGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCCATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTATAGTGCAGGGGAAAGAATAGTAGATATAATAGCAACAGACCTACAAACTAAAGAATTACAGAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGGAGAAAAGCAAAAATCATTAGGGATTATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG" @@ -835,7 +835,7 @@ "subtype_start": 5040, "subtype_end": 5619, "orientation": "forward", - "distance": 0.35416666666666674, + "distance": 0.36355859709153127, "protein": "MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH", "aminoacids": "MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH*", "nucleotides": "ATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATGTTTCAAAGAAAACTAAAGGATGGTTTTATAGACATCACTATGAAAGCACTCATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTGGTAGTAACAACATATTGGGGCCTGAATACAGGAGAAAGAGAATGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGAAAAAGGAAATATAGCACACAAGTTGACCCTAACCTAGCAGACCAACTAATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACATATAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGCTCTCTACAATACTTGGCACTAAAAGCATTAACAACACCAAAGAGAAGAAAGCCACCTTTACCTAGTGTTAGGAAACTGACAGAGGATAGATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAG" @@ -847,7 +847,7 @@ "subtype_start": 5558, "subtype_end": 5850, "orientation": "forward", - "distance": 0.4038461538461544, + "distance": 0.39444027047332864, "protein": "MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS", "aminoacids": "MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS*T", "nucleotides": "ATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAGAGCTTTTAGAGGAACTTAAGAATGAAGCGGTTAGACATTTTCCTAGGCCGTGGCTCCATGGCTTAGGACAACATATCTATGAAACTTATGGGGACACTTGGACAGGAGTGGAGGCCATAATAAGAACCCTGCAACAACTGCTGTTTATTCATTTCAGACTTGGGTGTCGACATAGCAGAATAGGCATTGTGCCACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACT" @@ -859,7 +859,7 @@ "subtype_start": 5830, "subtype_end": 6045, "orientation": "forward", - "distance": 0.29166666666666674, + "distance": 0.31992687385740404, "protein": "MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ", "aminoacids": "MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ*", "nucleotides": "ATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCACCCAGGAAGTCAGCCTAAAACTCCTTGTACTAACTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAAAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGTAA" @@ -871,7 +871,7 @@ "subtype_start": 5969, "subtype_end": 6045, "orientation": "forward", - "distance": 0.5769230769230769, + "distance": 0.48200514138817474, "protein": "MAGRSGDSDEELLKAVRLIKILYQSS", "aminoacids": "MAGRSGDSDEELLKAVRLIKILYQSS", "nucleotides": "ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGT" @@ -883,7 +883,7 @@ "subtype_start": 6061, "subtype_end": 6310, "orientation": "forward", - "distance": 0.6865853658536587, + "distance": 0.5254806794847863, "protein": "MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAKDSGNESEGDQEELSALMEMGHHAPGDVDDL", "aminoacids": "MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAKDSGNESEGDQEELSALMEMGHHAPGDVDDL*", "nucleotides": "ATGCAACCTCTGCACATAGCAGCAATAGTAGGATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGACCATAGTGTTAATAGAATATAGGAAAATATTAAGACAAAAAAGGATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAAAAGACAGTGGCAATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAG" @@ -895,7 +895,7 @@ "subtype_start": 6224, "subtype_end": 8795, "orientation": "forward", - "distance": 0.49135514018691584, + "distance": 0.4421225244922844, "protein": "MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEAHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRNKMQKEYALFYKLDVVPIDNDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYENKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSETETFRPGGGDMKDNWRSELYKYKVEKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL", "aminoacids": "MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEAHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRNKMQKEYALFYKLDVVPIDNDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYENKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSETETFRPGGGDMKDNWRSELYKYKVEKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL*", "nucleotides": "ATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTGACAGTCTATTATGGGGTACCTGTATGGAAAGAAGCAAACACCACTCTATTTTGTGCATCGGATGCTAAAGCATATACCACAGAGGCACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGGATTGGAAAATGTGACAGAAAATTTTAACATGTGGAAAAATAACATGGTAGAACAGATGCATGAGGATGTAATCAATTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCACTAATCTGAATGTTACTAATACCAATAGCAGTAGTGAGGAGGGAAAGATGGCGGAAGAAATGAGAAACTGCTCTTTCAATATCACCACAAAAATAAGAAATAAGATGCAGAAGGAATATGCACTTTTTTATAAACTTGATGTAGTACCAATAGATAATGATAATACAAGTTATACATTGATAAATTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCTATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAGGATAAGAAGTTCAATGGATCAGGACCATGTAAAAATGTCAGCACAGTACAATGTACACATGGAATTAAGCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTTTAGCAGAAGAAGAGGTAGTAATTAGATCTGAAAATTTCACGAACAATGCTAAAACCATAATAGTACATCTGAAGGAACCTATACAAATTAATTGTACAAGACCCAACAACAATACAATGAAAAGTATCCCTCTAGGACCAGGAAGAGCATTCTATGCAACAGGAGCCATAATAGGAGATATAAGACAAGCACATTGTAACCTTAGTAGAAAAGCATGGAATAATACTTTAAAACAGGTAGTTGAAAAATTAAAAGAACAATATGAGAATAAAACAATAATCTTTAATCACTCCTCAGGAGGGGACCCAGAAATTATAATGCATACTTTTAATTGTGGAGGGGAATTTTTCTATTGTAATACAACACAGCTGTTTAATAGTACTTGGAATAGTACTTGGACTGGGAATGCTACCGAATTAGATGGAAACATCACACTCCCATGCAGAATAAAACAGATTATAAACAGGTGGCAAGAAGTAGGAAAAGCAATGTATGCCCCTCCCATTAGAGGAAAAATTAGATGTTCATCAAATATTACAGGGTTACTATTAGTAAGAGATGGTGGTAACACGAGCGAGACTGAGACCTTCAGACCTGGAGGAGGAGATATGAAGGACAATTGGAGGAGTGAATTATATAAATATAAAGTAGAAAAAATTGAGCCATTAGGAGTAGCACCCACCAGGGCAAAGAGAAGAGTGGTGCAAAGAGAAAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAAGCCAGGCTGTTATTGTCTGGTATAGTGCAACAGCAAAACAATTTGCTGAGAGCTATTGAGGCGCAACAACATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTACAGGATCAACAGCGCCTGGGAATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCCTGGAATGCTAGTTGGAGTAATAAATCTCTGAATCAGATTTGGGATAACATGACCTGGATGGAGTGGGAAAGAGAAATTAACAATTACACAGACACAATATACACCTTAATTGAAAAGGCGCAGAACCAGCAGGAAAAAAATGAACAAGAATTATTGGAATTGGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAAATGGCTGTGGTACATAAAATTATTCATAATGATAGTAGGAGGATTGATAGGTTTAAGAATAGTTTTTGCTGTACTTGCTATAGTAAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGCCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAGCTTATTCAATGTCACAGCCATCGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAAGAGCTTGTAGAGCTCTTCTCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCATTGTTATAA" @@ -907,7 +907,7 @@ "subtype_start": 8376, "subtype_end": 8469, "orientation": "forward", - "distance": 0.28666666666666596, + "distance": 0.3161764705882347, "protein": "RPTSQPRGDPTGPKESKKKVEKETETDQFD", "aminoacids": "RPTSQPRGDPTGPKESKKKVEKETETDQFD**", "nucleotides": "AGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGA" @@ -919,7 +919,7 @@ "subtype_start": 8377, "subtype_end": 8653, "orientation": "forward", - "distance": 0.39560439560439553, + "distance": 0.38952607660679506, "protein": "DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVPLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE", "aminoacids": "DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVPLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE*CY*", "nucleotides": "GACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGCCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAG" @@ -931,7 +931,7 @@ "subtype_start": 8796, "subtype_end": 9417, "orientation": "forward", - "distance": 0.6162601626016186, + "distance": 0.49848743916874616, "protein": "MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPMSLHGMEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC", "aminoacids": "MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPMSLHGMEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC*H*", "nucleotides": "ATGGGGGGCAAGTGGTCAAAAAGTAGTGGGGGTGGATGGCCTGCTGTAAGGGAAAGAATGAGACGAACTGAGCCAGCAGCAGAAGGGGTGGGAGCAGTATCTCGAGACCTGGAAAGACATGGAGCAGTCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGCGCCTGGCTGGAAGCACAAGAAGAGGACAGTGAAGTGGGTTTTCCAGTCAGACCTCAGGTGCCTTTAAGACCAATGACTTTCAAAGGAGCTCTCGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCCCAAAAAAGACAAGATATCCTTGACCTGTGGGTCTACAACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGACCAGATATCCACTGACCTTTGGGTGGTGTTTCAAGCTAGTACCAGTGGAGCCAGAAGAGGCCAATCAAGGAGAGAACAACTGCTTGTTACACCCTATGAGCCTGCATGGGATGGAGGACCCGGAAAAAGAAGTATTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCACATGGCCCGAGAGAAGCATCCGGAGTACTACAAAGACTGCTGACATTGA" @@ -945,7 +945,7 @@ "subtype_start": 789, "subtype_end": 2292, "orientation": "forward", - "distance": 0.1894, + "distance": 0.23400049419322955, "protein": "MGARASVLSGGELDKWEKIRLRPGGKKKYRLKHIVWASRELERFAVNPGLLETSEGCRQIMGQLQPALQTGSEELRSLYNTVATLYCVHQRIEVKDTKEALEKVEEEQNKSKKKAQQAAAGAGNSSQTSTSQNYPIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQATNSAAIMMQRGNFRNQRKSVKCFNCGKDGHIAKNCRAPRRKGCWKCGKEGHQMKDCPERQANFLGKIWPSHKGRPGNFLQNRPEPTAPPEESFRFGEETTTPSQKQEKIDQDLYPLASLKSLFGNDPSSQ", "aminoacids": "MGARASVLSGGELDKWEKIRLRPGGKKKYRLKHIVWASRELERFAVNPGLLETSEGCRQIMGQLQPALQTGSEELRSLYNTVATLYCVHQRIEVKDTKEALEKVEEEQNKSKKKAQQAAAGAGNSSQTSTSQNYPIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQATNSAAIMMQRGNFRNQRKSVKCFNCGKDGHIAKNCRAPRRKGCWKCGKEGHQMKDCPERQANFLGKIWPSHKGRPGNFLQNRPEPTAPPEESFRFGEETTTPSQKQEKIDQDLYPLASLKSLFGNDPSSQ*R*", "nucleotides": "ATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAGAATTAGACAAGTGGGAAAAAATTCGGTTGAGGCCAGGGGGAAAGAAAAAATATAGATTAAAGCATATCGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTTAACCCTGGCCTGTTAGAAACATCAGAAGGCTGTAGACAAATAATGGGACAGCTACAACCAGCCCTTCAGACAGGATCAGAAGAACTTAGATCATTGTATAATACAGTAGCAACCCTCTATTGTGTACATCAAAGGATAGAGGTAAAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAAGCACAGCAAGCAGCAGCTGGCGCAGGAAACAGCAGTCAGACCAGCACCAGCCAAAATTACCCTATAGTACAGAACATTCAGGGGCAAATGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTCTCAGCACTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTACATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAGCCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGGATGGATGACTAATAATCCACCTATCCCAGTAGGAGAAATTTATAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGAATGTATAGCCCCACCAGCATTCTAGACATAAGACAAGGACCAAAGGAGCCCTTTAGAGACTATGTAGATCGGTTCTATAAAACTCTAAGAGCCGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTAGTCCAAAATGCGAACCCAGATTGTAAGACTATTTTAAAAGCATTGGGTCCAGCAGCTACACTAGAGGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCCGGTCATAAAGCAAGAGTTTTAGCGGAAGCAATGAGCCAAGCAACAAATTCAGCTGCCATAATGATGCAGAGAGGCAATTTTAGGAACCAAAGAAAAAGTGTTAAGTGTTTTAATTGCGGCAAAGATGGGCACATAGCAAAAAATTGCAGGGCCCCTAGAAGAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGATTGTCCAGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGGAGGCCAGGGAATTTTCTTCAGAACAGACCAGAGCCAACAGCCCCACCAGAGGAGAGCTTCAGGTTTGGGGAGGAGACAACAACTCCCTCTCAGAAGCAGGAGAAGATAGACCAGGACCTGTATCCTTTAGCTTCCCTCAAATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGGTAG" @@ -957,7 +957,7 @@ "subtype_start": 2084, "subtype_end": 5096, "orientation": "forward", - "distance": 0.13958125623130613, + "distance": 0.18376079594676187, "protein": "FFRENLAFPQGEAREFSSEQTRANSPTRGELQVWGGDNNSLSEAGEDRPGPVSFSFPQITLWQRPLVTIKVGGQLKEALLDTGADDTVLEDMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGVRYQYNVLPQGWKGSPAIFQSSMTKILEPYRKQNPNIVIYQYMDDLYVGSDLEIGQHRIKIEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIALPEKESWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGAKALTEVIPLTKEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQEQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKSGKAGYVTNRGRQKVIPLTDTTNQKTELHAIYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQEAAYFILKLAGRWPVATIHTDNGSNFTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDVIATDLQTKELQKQITKIQHFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSEIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED", "aminoacids": "FFRENLAFPQGEAREFSSEQTRANSPTRGELQVWGGDNNSLSEAGEDRPGPVSFSFPQITLWQRPLVTIKVGGQLKEALLDTGADDTVLEDMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGVRYQYNVLPQGWKGSPAIFQSSMTKILEPYRKQNPNIVIYQYMDDLYVGSDLEIGQHRIKIEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIALPEKESWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGAKALTEVIPLTKEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQEQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKSGKAGYVTNRGRQKVIPLTDTTNQKTELHAIYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIDKAQEDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQEAAYFILKLAGRWPVATIHTDNGSNFTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDVIATDLQTKELQKQITKIQHFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSEIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*", "nucleotides": "TTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGGAGGCCAGGGAATTTTCTTCAGAACAGACCAGAGCCAACAGCCCCACCAGAGGAGAGCTTCAGGTTTGGGGAGGAGACAACAACTCCCTCTCAGAAGCAGGAGAAGATAGACCAGGACCTGTATCCTTTAGCTTCCCTCAAATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGGTAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGACATGAGTTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAAATACTCATAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGATTGGTTGCACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGCACAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATAGGGCCTGAGAATCCATACAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGACTTCAGAGAACTAAATAAGAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCCGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCCTATTTTTCAGTTCCCTTAGACAAAGACTTCAGGAAGTATACTGCATTTACCATACCTAGTATAAACAATGAGACACCAGGGGTTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAACCTTATAGAAAACAAAATCCAAACATAGTTATATATCAATACATGGATGATTTGTATGTAGGATCTGACCTAGAAATAGGGCAGCATAGAATAAAAATAGAAGAACTGAGACAACATCTGTTGAAGTGGGGATTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGGTATGAACTCCATCCTGACAAGTGGACAGTACAGCCTATAGCGCTGCCAGAAAAAGAAAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTGAACTGGGCAAGTCAGATCTACCCAGGAATTAAAGTAAGGCAATTATGTAAACTACTTAGGGGAGCCAAAGCACTAACAGAAGTAATACCACTAACAAAAGAAGCAGAGCTAGAATTAGCAGAAAACAGGGAGATTCTAAAAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAGCAGGAGCAAGGCCAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTGACAGAGGCAGTGCAAAAAATAGCCACAGAAAGCATAGTGATATGGGGAAAGACTCCTAAATTTAGACTACCCATACAAAAAGAAACATGGGAAGCATGGTGGACAGAATATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTAAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAACAGGGAAACTAAATCAGGAAAAGCAGGATATGTTACTAATAGAGGAAGACAAAAAGTTATCCCCCTAACTGACACAACAAATCAGAAGACTGAGTTACATGCAATTTATCTAGCTTTGCAAGATTCGGGATTAGAAGTAAATATAGTAACAGACTCACAGTATGCATTAGGAATCATTCAAGCACAACCAGATAAAAGTGAATCAGAGTTAGTCAGTCAAATAATAGAGCAGTTAATAAAAAAGGAAAAGGTCTATCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTGCTGGAATCAGGAAAGTACTGTTTTTAGATGGAATAGATAAGGCCCAAGAAGACCATGAGAAATATCACAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTGGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGAGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAACTAGATTGTACACATTTAGAAGGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTCATTCCAGCAGAGACAGGGCAGGAAGCAGCATACTTTATTTTAAAATTAGCAGGACGATGGCCAGTAGCAACAATACATACAGACAATGGCAGCAATTTCACCAGTGCTACAGTTAAGGCCGCCTGCTGGTGGGCAGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAACAATGAATTGAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAGTAGACGTAATAGCAACAGACTTACAAACTAAAGAACTACAAAAACAAATTACAAAAATTCAACATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTCCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGAAATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATTATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG" @@ -969,7 +969,7 @@ "subtype_start": 5040, "subtype_end": 5619, "orientation": "forward", - "distance": 0.40104166666666674, + "distance": 0.3927769842889206, "protein": "MENRWQVMIVWQVDRMRIRRWHSLVKHHIYISGKARGWVYKHHYENTHPRISSKVYIPLGEARLAVTTYWGLHTGERDWHLGQGVSIEWRKKEYSTQVDPNLADQLIHLYYFDCFSESAIRNVILGHRVSPRCEYQAGHNKVGSLQYLALTALVTPKKTKPPLPSITKLTEDRWNKPQRTKGHRGNHTMNGH", "aminoacids": "MENRWQVMIVWQVDRMRIRRWHSLVKHHIYISGKARGWVYKHHYENTHPRISSKVYIPLGEARLAVTTYWGLHTGERDWHLGQGVSIEWRKKEYSTQVDPNLADQLIHLYYFDCFSESAIRNVILGHRVSPRCEYQAGHNKVGSLQYLALTALVTPKKTKPPLPSITKLTEDRWNKPQRTKGHRGNHTMNGH*SF*", "nucleotides": "ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAAGATGGCACAGTTTAGTAAAACACCATATATATATTTCAGGGAAAGCTAGAGGATGGGTTTATAAACATCACTATGAAAACACTCATCCAAGAATAAGTTCAAAAGTATACATCCCACTAGGGGAAGCTAGACTGGCAGTAACAACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCACTTGGGTCAGGGAGTCTCCATAGAATGGAGGAAAAAGGAATATAGCACACAAGTAGACCCTAACCTAGCAGACCAACTAATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGTCATATTAGGACATAGAGTTAGCCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGATCTTTACAGTACTTGGCACTAACAGCATTAGTAACACCAAAAAAGACAAAGCCACCTTTGCCTAGTATTACGAAACTGACAGAGGATAGATGGAACAAGCCCCAGAGAACCAAGGGCCACCGAGGGAACCATACAATGAATGGGCACTAGAGCTTTTAG" @@ -981,7 +981,7 @@ "subtype_start": 5558, "subtype_end": 5850, "orientation": "forward", - "distance": 0.5576923076923082, + "distance": 0.4735467015022863, "protein": "MEQAPENQGPPREPYNEWALELLEELKSEAVRHFPRMWLHGLGQHIYETYGDTWTGVEALIRSLQQLLFIHFRIGCRHSRIGITPQRRTRNGASRS", "aminoacids": "MEQAPENQGPPREPYNEWALELLEELKSEAVRHFPRMWLHGLGQHIYETYGDTWTGVEALIRSLQQLLFIHFRIGCRHSRIGITPQRRTRNGASRS*S", "nucleotides": "ATGGAACAAGCCCCAGAGAACCAAGGGCCACCGAGGGAACCATACAATGAATGGGCACTAGAGCTTTTAGAGGAGCTTAAGAGTGAAGCTGTTAGACATTTTCCTAGGATGTGGCTCCATGGCTTAGGGCAACACATCTATGAGACTTATGGGGATACTTGGACAGGAGTGGAAGCCTTAATAAGAAGTCTGCAACAACTGCTGTTCATTCATTTCAGAATTGGGTGTCGACATAGCAGAATAGGAATTACTCCACAGAGGAGAACAAGAAATGGAGCCAGTAGATCCTAATCT" @@ -993,7 +993,7 @@ "subtype_start": 5830, "subtype_end": 6045, "orientation": "forward", - "distance": 0.45833333333333326, + "distance": 0.42503863987635226, "protein": "MEPVDPNLEPWKHPGSQPKTACTTCYCKQCCYHCQVCFITKGLGISYGRKKRRQRRGSPQDSQIHQASLSKQ", "aminoacids": "MEPVDPNLEPWKHPGSQPKTACTTCYCKQCCYHCQVCFITKGLGISYGRKKRRQRRGSPQDSQIHQASLSKQ", "nucleotides": "ATGGAGCCAGTAGATCCTAATCTAGAGCCCTGGAAGCATCCAGGAAGCCAGCCTAAGACTGCTTGTACCACTTGCTATTGTAAACAGTGTTGCTATCATTGCCAAGTTTGTTTCATAACCAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAACGACGAGGATCTCCTCAAGACAGTCAGATTCATCAAGCTTCTCTATCAAAGCAG" @@ -1005,7 +1005,7 @@ "subtype_start": 5969, "subtype_end": 6045, "orientation": "forward", - "distance": 0.6923076923076923, + "distance": 0.5275498241500586, "protein": "MAGRSGDNDEDLLKTVRFIKLLYQSS", "aminoacids": "MAGRSGDNDEDLLKTVRFIKLLYQSS", "nucleotides": "ATGGCAGGAAGAAGCGGAGACAACGACGAGGATCTCCTCAAGACAGTCAGATTCATCAAGCTTCTCTATCAAAGCAGT" @@ -1017,7 +1017,7 @@ "subtype_start": 6061, "subtype_end": 6310, "orientation": "forward", - "distance": 0.552439024390244, + "distance": 0.4711878510505513, "protein": "MQSLAILAIVALVVAAIIAIVVWTIVFIEYRKILRQRKIDRLIDRIRERAEDSGNESEGDHEELSALMEMGHHAPWDVDDL", "aminoacids": "MQSLAILAIVALVVAAIIAIVVWTIVFIEYRKILRQRKIDRLIDRIRERAEDSGNESEGDHEELSALMEMGHHAPWDVDDL*", "nucleotides": "ATGCAATCTTTAGCAATATTAGCAATAGTAGCATTAGTAGTAGCAGCCATAATAGCAATAGTTGTGTGGACCATAGTATTCATAGAATATAGGAAAATATTAAGACAAAGGAAAATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGATAGTGGCAATGAGAGTGAAGGGGATCATGAAGAATTATCAGCACTTATGGAGATGGGGCATCATGCTCCTTGGGATGTTGATGATCTGTAG" @@ -1029,7 +1029,7 @@ "subtype_start": 6224, "subtype_end": 8795, "orientation": "forward", - "distance": 0.5558411214953274, + "distance": 0.47271787942614163, "protein": "MRVKGIMKNYQHLWRWGIMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYDTEAHNVWATHACVPTDPNPQEIGLENVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLHCTKLEINSTKKTNSTNNGTNINATDDSWGEMKNCSFNTTASIRDKVQREFALFYKLDIVPIDNDDINYRLISCNTSVLTQACPKVSFEPIPIHYCAPAGFAILKCRDKNFNGTGQCKNVSTVQCTHGIRPVVSTQLLFNGSLAEEEVVIKSENITDNTKTIIVQLNASVAIVCTRPNNNTRKSIPIGPGRAFYAAGDIIGDIRRAHCILNKTTWDNTIEQVAKKLREQFENKTIVFSESSGGDPEITMISFNCGGEFFYCNSVQLFNSTWHNNGSSTTGSSSSEGNITLPCKIKQIINMWQEVGKAMYAPPIRGPISCESNITGLLLTRDGGNDANGNNTETFRPGGGNMRDNWRSELYRYKVVKIEPLGVAPTRAQRRVVQREKRAVGLGALFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQNNLLRAIEAQQHMLQLTVWGIKQLQARVLAVERYLKDQQLLGLWGCSGKLICNTAVPWNTSWSNKSLDDIWHNMTWMEWEREIDNYTNIIYSLIEASQTQQEKNEQELLELDKWASLWNWFSISNWLWYIKIFIMIVGGLVGLRIVFTILSIVNRVRKGYSPLSFQTHLPAQRGPDRPEGTGDEGGEQDRDRSTHLVDGFLAIIWVDLRNLCLFLYHRLRDLLLIAARIVELLGRRGWEALKYWWNLLQYWRRELKNSAVSLLNATAIAVAEGTDRVIEGLRRAFRAIIHIPRRIRQGLERALQ", "aminoacids": "MRVKGIMKNYQHLWRWGIMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYDTEAHNVWATHACVPTDPNPQEIGLENVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLHCTKLEINSTKKTNSTNNGTNINATDDSWGEMKNCSFNTTASIRDKVQREFALFYKLDIVPIDNDDINYRLISCNTSVLTQACPKVSFEPIPIHYCAPAGFAILKCRDKNFNGTGQCKNVSTVQCTHGIRPVVSTQLLFNGSLAEEEVVIKSENITDNTKTIIVQLNASVAIVCTRPNNNTRKSIPIGPGRAFYAAGDIIGDIRRAHCILNKTTWDNTIEQVAKKLREQFENKTIVFSESSGGDPEITMISFNCGGEFFYCNSVQLFNSTWHNNGSSTTGSSSSEGNITLPCKIKQIINMWQEVGKAMYAPPIRGPISCESNITGLLLTRDGGNDANGNNTETFRPGGGNMRDNWRSELYRYKVVKIEPLGVAPTRAQRRVVQREKRAVGLGALFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQNNLLRAIEAQQHMLQLTVWGIKQLQARVLAVERYLKDQQLLGLWGCSGKLICNTAVPWNTSWSNKSLDDIWHNMTWMEWEREIDNYTNIIYSLIEASQTQQEKNEQELLELDKWASLWNWFSISNWLWYIKIFIMIVGGLVGLRIVFTILSIVNRVRKGYSPLSFQTHLPAQRGPDRPEGTGDEGGEQDRDRSTHLVDGFLAIIWVDLRNLCLFLYHRLRDLLLIAARIVELLGRRGWEALKYWWNLLQYWRRELKNSAVSLLNATAIAVAEGTDRVIEGLRRAFRAIIHIPRRIRQGLERALQ*", "nucleotides": "ATGAGAGTGAAGGGGATCATGAAGAATTATCAGCACTTATGGAGATGGGGCATCATGCTCCTTGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTTACAGTCTATTATGGGGTACCTGTGTGGAAAGAAGCAAACACCACTCTATTCTGTGCATCAGATGCTAAAGCATATGATACAGAGGCACATAATGTTTGGGCCACACATGCCTGTGTACCTACAGACCCCAACCCACAAGAAATAGGATTGGAAAATGTGACAGAAAATTTTAACATGTGGAAAAATAACATGGTAGAACAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTACATTGCACTAAGTTGGAGATTAATAGCACTAAGAAGACTAATAGCACTAATAATGGTACTAACATCAATGCCACTGATGATAGTTGGGGGGAAATGAAAAACTGCTCTTTCAATACCACTGCAAGCATAAGAGATAAGGTACAGAGAGAATTTGCGCTTTTTTATAAACTTGATATAGTACCAATAGATAATGATGATATCAACTATAGGTTAATAAGTTGTAACACCTCAGTCCTTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAGAGATAAAAATTTCAATGGAACAGGACAATGTAAAAATGTCAGCACAGTGCAATGTACACATGGAATTAGGCCAGTAGTATCAACTCAACTGCTGTTCAATGGCAGTCTAGCAGAAGAAGAGGTAGTAATTAAATCTGAAAATATCACAGACAATACTAAAACTATAATAGTACAGCTGAATGCATCTGTAGCAATTGTTTGTACAAGACCCAACAACAATACAAGAAAAAGTATACCTATAGGGCCAGGGAGAGCGTTTTATGCAGCAGGAGATATAATAGGAGACATAAGACGAGCACACTGTATCCTTAACAAAACAACATGGGATAACACAATAGAACAGGTAGCTAAAAAATTAAGAGAACAATTTGAGAATAAGACAATAGTCTTTAGTGAATCCTCGGGAGGGGACCCAGAAATTACAATGATTAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAATTCAGTACAACTGTTTAATAGTACTTGGCATAATAATGGGAGTAGTACTACAGGGTCAAGTAGCAGTGAAGGCAATATCACACTCCCATGCAAAATAAAACAAATTATAAACATGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCATCAGAGGACCAATTAGCTGCGAGTCAAATATTACAGGGTTGCTACTAACAAGAGATGGTGGGAATGACGCTAACGGGAACAACACCGAGACCTTCAGACCTGGAGGAGGAAATATGAGGGACAATTGGCGAAGTGAATTATATAGATACAAAGTAGTAAAAATTGAACCATTAGGAGTAGCACCCACCAGGGCACAGAGAAGAGTGGTACAGAGAGAAAAAAGAGCAGTGGGTCTCGGAGCCTTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAATAACGCTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAGCAGCAGAACAATTTGCTGAGGGCTATTGAGGCGCAACAGCATATGTTGCAACTCACAGTCTGGGGCATCAAACAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTAAAGGATCAACAGCTCCTGGGGCTTTGGGGTTGCTCTGGAAAACTCATCTGCAACACTGCTGTGCCTTGGAATACTAGTTGGAGTAACAAATCTCTGGATGATATTTGGCATAACATGACCTGGATGGAGTGGGAAAGAGAAATTGACAATTACACAAACATAATATACAGCTTAATTGAGGCATCGCAAACCCAGCAAGAAAAGAATGAACAAGAATTACTAGAATTAGACAAATGGGCAAGTCTGTGGAATTGGTTTAGCATATCAAACTGGCTGTGGTACATAAAAATATTCATAATGATAGTAGGAGGCTTGGTAGGTTTAAGAATAGTTTTTACTATACTTTCTATAGTGAATAGAGTTAGGAAGGGATACTCACCATTATCGTTTCAGACCCACCTCCCAGCCCAGAGGGGACCCGACAGGCCCGAAGGAACCGGAGACGAAGGTGGAGAGCAAGACAGAGACAGATCCACTCACTTAGTGGATGGATTCTTAGCAATTATCTGGGTCGACCTGCGGAACCTGTGCCTCTTCCTCTACCACCGCTTGAGAGACTTACTCTTGATTGCAGCGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAATACTGGTGGAACCTTCTGCAGTATTGGAGGCGGGAACTAAAGAATAGTGCTGTTAGCTTGCTTAATGCCACAGCCATAGCAGTAGCTGAGGGGACAGATAGAGTTATAGAAGGATTGCGCAGAGCTTTTAGAGCTATTATCCACATACCTAGAAGAATAAGACAGGGCTTGGAAAGAGCTTTGCAATAA" @@ -1041,7 +1041,7 @@ "subtype_start": 8376, "subtype_end": 8469, "orientation": "forward", - "distance": 0.28666666666666596, + "distance": 0.3161764705882347, "protein": "RPTSQPRGDPTGPKEPETKVESKTETDPLT", "aminoacids": "RPTSQPRGDPTGPKEPETKVESKTETDPLT*WMDS*", "nucleotides": "AGACCCACCTCCCAGCCCAGAGGGGACCCGACAGGCCCGAAGGAACCGGAGACGAAGGTGGAGAGCAAGACAGAGACAGATCCACTCACTTAGTGGATGGATTCTTAG" @@ -1053,7 +1053,7 @@ "subtype_start": 8377, "subtype_end": 8653, "orientation": "forward", - "distance": 0.4505494505494505, + "distance": 0.4208581400123177, "protein": "DPPPSPEGTRQARRNRRRRWRARQRQIHSLSGWILSNYLGRPAEPVPLPLPPLERLTLDCSEDCGTSGTQGVGSPQILVEPSAVLEAGTKE", "aminoacids": "DPPPSPEGTRQARRNRRRRWRARQRQIHSLSGWILSNYLGRPAEPVPLPLPPLERLTLDCSEDCGTSGTQGVGSPQILVEPSAVLEAGTKE*", "nucleotides": "GACCCACCTCCCAGCCCAGAGGGGACCCGACAGGCCCGAAGGAACCGGAGACGAAGGTGGAGAGCAAGACAGAGACAGATCCACTCACTTAGTGGATGGATTCTTAGCAATTATCTGGGTCGACCTGCGGAACCTGTGCCTCTTCCTCTACCACCGCTTGAGAGACTTACTCTTGATTGCAGCGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAATACTGGTGGAACCTTCTGCAGTATTGGAGGCGGGAACTAAAGAATAG" @@ -1065,7 +1065,7 @@ "subtype_start": 8796, "subtype_end": 9417, "orientation": "forward", - "distance": 0.6089430894308867, + "distance": 0.4955014554114815, "protein": "MGGKWSKCSIVGWPTVRERIRRAEPAAEGVGAVSRDLEKHGAITSSNANNADCTWLEAQKEEEEVGFPVRPQVPLRPMTYKAALDLSHFLKEKGGLEGIIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRFPLTFGWCFKLVPVEPERVEEENKRENRCLLHPMSQHGMDDPEKEVLQWRFDSRLAFHHVARELHPEYYKN", "aminoacids": "MGGKWSKCSIVGWPTVRERIRRAEPAAEGVGAVSRDLEKHGAITSSNANNADCTWLEAQKEEEEVGFPVRPQVPLRPMTYKAALDLSHFLKEKGGLEGIIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRFPLTFGWCFKLVPVEPERVEEENKRENRCLLHPMSQHGMDDPEKEVLQWRFDSRLAFHHVARELHPEYYKN*NC*", "nucleotides": "ATGGGTGGTAAATGGTCAAAATGTAGTATAGTTGGATGGCCTACTGTAAGGGAAAGAATAAGACGAGCAGAGCCAGCAGCAGAAGGGGTGGGAGCAGTATCTCGAGACCTGGAAAAGCATGGAGCAATCACAAGTAGCAATGCTAACAATGCTGATTGTACCTGGCTGGAAGCCCAAAAAGAAGAGGAGGAGGTAGGCTTTCCAGTCAGGCCTCAGGTACCCTTAAGACCAATGACTTACAAGGCAGCCTTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGATAATTTACTCCCAAAAAAGACAAGATATTCTTGATCTGTGGGTCTACAACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGACTAGATTTCCACTGACCTTTGGATGGTGCTTCAAGCTAGTACCAGTTGAGCCAGAGAGGGTAGAAGAGGAGAATAAAAGAGAGAACCGCTGCTTGTTACACCCTATGAGCCAGCATGGGATGGATGACCCAGAGAAAGAAGTGCTACAGTGGAGGTTTGACAGCCGCCTAGCCTTTCACCACGTAGCCAGAGAGCTGCATCCGGAGTACTATAAGAACTAGAACTGCTGA" @@ -1079,7 +1079,7 @@ "subtype_start": 789, "subtype_end": 2292, "orientation": "forward", - "distance": 0.2571999999999999, + "distance": 0.2932056543547651, "protein": "MGARASILSGGKLDSWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSVNVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE", "aminoacids": "MGARASILSGGKLDSWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSVNVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE*", "nucleotides": "ATGGGTGCGAGAGCGTCAATATTAAGCGGGGGAAAATTAGATTCATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATTTAGTATGGGCAAGCAGGGAGCTAGAACGATTTGCCGTTAACCCTGGCCTGTTAGAAACATCAGAGGGATGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATTTAATGCAGTAGCAGTCCTCTATTGTGTACATCAAAGGATACAGGTACAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGTAGCAGCAGCTGACACTGACACAGGAAACAGCAGCCAAAATTACCCCATAGTGCAGAACCTCCAGGGGCAAATGGTACATCAGCCCCTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAAAAGGCCTTCAGCCCAGAAGTCATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCTTGGGATTAAATAAAATAGTAAGGATGTATAGCCCTACCAGTATTCTGGATATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAGAACTTTAAGAGCTGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATTCGAATCCAGATTGTAAGACTATTTTAAAAGCATTAGGACCAGCAGCAACACTAGAGGAAATGATGACAGCATGTCAAGGAGTGGGGGGACCAGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAAATTCAGTTAATGTAATGATGCAAAGAGGCAATTTTAGAAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACATCAAATGAAAGACTGTACAGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAA" @@ -1091,7 +1091,7 @@ "subtype_start": 2084, "subtype_end": 5096, "orientation": "forward", - "distance": 0.14755732801595212, + "distance": 0.1922427454342348, "protein": "FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEAFLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED", "aminoacids": "FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEAFLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*", "nucleotides": "TTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAAATAGGGGGGCAATTTAAAGAAGCTTTCTTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACCCATAGAAATCTGTGGACACAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGCTTGGTTGTACCTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTCAATAAGAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAATTCCCTTAGATAAAGAATTCAGGAAGTATACTGCATTTACCATACCTAGTACAAATAATGAGACACCAGGGATTAGGTATGAGTACAATGTGCTGCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGCAAAATCCAGATATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAACTAAGACAACATCTGTTAAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAGTGGACAGTACAGCCTATAATACTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTACGCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAGGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTTTAAGAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGCAATGGACAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTACAAAAGATAGCCACAGAAAGCATAGTAATATGGGGAAAAACTCCTAAATTTAGACTACCTATACAAAAAGAAACATGGGAGACATGGTGGGCAGAGTACTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAATTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACTAAATTAGGCAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAGGTTATCTCCCTAACGGACACAACAAATCAAAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATCAGAAGTAAACATAGTAACAGACTCACAATATACATTAGGAATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAATCAGATAATAGAGCAGTTAATAAAAAAGGAAAAAGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGACAAACTAGTCAGTGCTGGAGTCAGGAGAGTACTATTTCTAGATGGAATAGATAAGGCCCAAGAAGACCATGAGAAATATCACAGTAATTGGAGAGCAATGGCTGGTGATTTTAATATACCCCCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCAAAAAGGAGAGGCCATGCATGGACAAGTAGATTGTAGTCCAGGAATATGGCAACTAGATTGTACACATCTAGAAGGGAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTCTCCTGAAACTAGCAGGGAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTAATGTGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCCATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTATAGTGCAGGGGAAAGAATAGTAGATATAATAGCAACAGACCTACAAACTAAAGAATTACAGAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGGAGAAAAGCAAAAATCATTAGGGATTATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG" @@ -1103,7 +1103,7 @@ "subtype_start": 5040, "subtype_end": 5619, "orientation": "forward", - "distance": 0.36979166666666674, + "distance": 0.37360555672490003, "protein": "MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHRVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH", "aminoacids": "MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHRVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH*", "nucleotides": "ATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATGTTTCAAAGAAAACTAAAGGATGGTTTTATAGACATCACTATGAAAGCACTCATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTGGTAGTAACAACATATTGGGGCCTGAATACAGGAGAAAGAGAATGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGAAAAAGGAAATATAGCACACAAGTTGACCCTAACCTAGCAGACCAACTAATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACATAGAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGCTCTCTACAATACTTGGCACTAAAAGCATTAACAACACCAAAGAGAAGAAAGCCACCTTTACCTAGTGTTAGGAAACTGACAGAGGATAGATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAG" @@ -1115,7 +1115,7 @@ "subtype_start": 5558, "subtype_end": 5850, "orientation": "forward", - "distance": 0.4038461538461544, + "distance": 0.39444027047332864, "protein": "MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS", "aminoacids": "MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS*T", "nucleotides": "ATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAGAGCTTTTAGAGGAACTTAAGAATGAAGCGGTTAGACATTTTCCTAGGCCGTGGCTCCATGGCTTAGGACAACATATCTATGAAACTTATGGGGACACTTGGACAGGAGTGGAGGCCATAATAAGAACCCTGCAACAACTGCTGTTTATTCATTTCAGACTTGGGTGTCGACATAGCAGAATAGGCATTGTGCCACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACT" @@ -1127,7 +1127,7 @@ "subtype_start": 5830, "subtype_end": 6045, "orientation": "forward", - "distance": 0.29166666666666674, + "distance": 0.31992687385740404, "protein": "MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ", "aminoacids": "MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ", "nucleotides": "ATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCACCCAGGAAGTCAGCCTAAAACTCCTTGTACTAACTGCTATTGCAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAAAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAG" @@ -1139,7 +1139,7 @@ "subtype_start": 5969, "subtype_end": 6045, "orientation": "forward", - "distance": 0.5769230769230769, + "distance": 0.48200514138817474, "protein": "MAGRSGDSDEELLKAVRLIKILYQSS", "aminoacids": "MAGRSGDSDEELLKAVRLIKILYQSS", "nucleotides": "ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGT" @@ -1151,7 +1151,7 @@ "subtype_start": 6061, "subtype_end": 6310, "orientation": "forward", - "distance": 0.6500000000000001, + "distance": 0.5118110236220472, "protein": "MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAEDSGNESEGDQEELSALMEMGHHAPGDVDDL", "aminoacids": "MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAEDSGNESEGDQEELSALMEMGHHAPGDVDDL*", "nucleotides": "ATGCAACCTCTGCACATAGCAGCAATAGTAGGATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGACCATAGTGTTAATAGAATATAGGAAAATATTAAGACAAAAAAGGATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAG" @@ -1163,7 +1163,7 @@ "subtype_start": 6224, "subtype_end": 8795, "orientation": "forward", - "distance": 0.49065420560747675, + "distance": 0.44177044766072027, "protein": "MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEVHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRDKMQKEYALFYKLDVVPIDDDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYGNKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSGTETFRPGGGNMKDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLDQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL", "aminoacids": "MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEVHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRDKMQKEYALFYKLDVVPIDDDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYGNKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSGTETFRPGGGNMKDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLDQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL*", "nucleotides": "ATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTGACAGTCTATTATGGGGTACCTGTATGGAAAGAAGCAAACACCACTCTATTTTGTGCATCGGATGCTAAAGCATATACCACAGAGGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGGATTGGAAAATGTGACAGAAAATTTTAACATGTGGAAAAATAACATGGTAGAACAGATGCATGAGGATGTAATCAATTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCACTAATCTGAATGTTACTAATACCAATAGCAGTAGTGAGGAGGGAAAGATGGCGGAAGAAATGAGAAACTGCTCTTTCAATATCACCACAAAAATAAGAGATAAGATGCAGAAAGAATATGCACTTTTTTATAAACTTGATGTAGTACCAATAGATGATGATAATACAAGTTATACATTGATAAATTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCTATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAGGATAAGAAGTTCAATGGATCAGGACCATGTAAAAATGTCAGCACAGTACAATGTACACATGGAATTAAGCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTTTAGCAGAAGAAGAGGTAGTAATTAGATCTGAAAATTTCACGAACAATGCTAAAACCATAATAGTACATCTGAAGGAACCTATACAAATTAATTGTACAAGACCCAACAACAATACAATGAAAAGTATCCCTCTAGGACCAGGAAGAGCATTCTATGCAACAGGAGCCATAATAGGAGATATAAGACAAGCACATTGTAACCTTAGTAGAAAAGCATGGAATAATACTTTAAAACAGGTAGTTGAAAAATTAAAAGAACAATATGGGAATAAAACAATAATCTTTAATCACTCCTCAGGAGGGGACCCAGAAATTATAATGCATACTTTTAATTGTGGAGGGGAATTTTTCTATTGTAATACAACACAGCTGTTTAATAGTACTTGGAATAGTACTTGGACTGGGAATGCTACCGAATTAGATGGAAACATCACACTCCCATGCAGAATAAAACAGATTATAAACAGGTGGCAAGAAGTAGGAAAAGCAATGTATGCCCCTCCCATTAGAGGAAAAATTAGATGTTCATCAAATATTACAGGGTTACTATTAGTAAGAGATGGTGGTAACACGAGCGGGACTGAGACCTTCAGACCTGGAGGAGGAAATATGAAGGACAATTGGAGGAGTGAATTATATAAATATAAAGTAGTAAAAATTGAGCCATTAGGAGTAGCACCCACCAGGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAAGCCAGGCTGTTATTGTCTGGTATAGTGCAACAGCAAAACAATTTGCTGAGAGCTATTGAGGCGCAACAACATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTACAGGATCAACAGCGCCTGGGAATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCCTGGAATGCTAGTTGGAGTAATAAATCTCTGGATCAGATTTGGGATAACATGACCTGGATGGAGTGGGAAAGAGAAATTAACAATTACACAGACACAATATACACCTTAATTGAAAAGGCGCAGAACCAGCAGGAAAAGAATGAACAAGAATTATTGGAATTGGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAAATGGCTGTGGTACATAAAATTATTCATAATGATAGTAGGAGGATTGATAGGTTTAAGAATAGTTTTTGCTGTACTTGCTATAGTAAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGTCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAGCTTATTTAATGTCACAGCCATCGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAAGAGCTTGTAGAGCTCTTCTCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCATTGTTATAA" @@ -1175,7 +1175,7 @@ "subtype_start": 8376, "subtype_end": 8469, "orientation": "forward", - "distance": 0.28666666666666596, + "distance": 0.3161764705882347, "protein": "RPTSQPRGDPTGPKESKKKVEKETETDQFD", "aminoacids": "RPTSQPRGDPTGPKESKKKVEKETETDQFD**", "nucleotides": "AGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGA" @@ -1187,7 +1187,7 @@ "subtype_start": 8377, "subtype_end": 8653, "orientation": "forward", - "distance": 0.4285714285714286, + "distance": 0.40871934604904625, "protein": "DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVSLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE", "aminoacids": "DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVSLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE*CY*", "nucleotides": "GACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGTCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAG" @@ -1199,7 +1199,7 @@ "subtype_start": 8796, "subtype_end": 9417, "orientation": "forward", - "distance": 0.6162601626016186, + "distance": 0.49848743916874616, "protein": "MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDNEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPTSLHGVEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC", "aminoacids": "MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDNEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPTSLHGVEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC*H*", "nucleotides": "ATGGGGGGCAAGTGGTCAAAAAGTAGTGGGGGTGGATGGCCTGCTGTAAGGGAAAGAATGAGACGAACTGAGCCAGCAGCAGAAGGGGTGGGAGCAGTATCTCGAGACCTGGAAAGACATGGAGCAGTCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGCGCCTGGCTGGAAGCACAAGAAGAGGACAATGAAGTGGGTTTTCCAGTCAGACCTCAGGTGCCTTTAAGACCAATGACTTTCAAAGGAGCTCTCGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCCCAAAAAAGACAAGATATCCTTGACCTGTGGGTCTACAACACACAAGGATACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGACCAGATATCCACTGACCTTTGGGTGGTGTTTCAAGCTAGTACCAGTGGAGCCAGAAGAGGCCAATCAAGGAGAGAACAACTGCTTGTTGCACCCTACGAGCCTGCATGGGGTGGAGGACCCGGAAAAAGAAGTATTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCACATGGCCCGAGAGAAGCATCCGGAGTACTACAAAGACTGCTGACATTGA" @@ -1213,7 +1213,7 @@ "subtype_start": 789, "subtype_end": 2292, "orientation": "forward", - "distance": 0.2571999999999999, + "distance": 0.2932056543547651, "protein": "MGARASILSGGKLDEWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSVNVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE", "aminoacids": "MGARASILSGGKLDEWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSVNVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE*R*", "nucleotides": "ATGGGTGCGAGAGCGTCAATATTAAGCGGGGGAAAATTAGATGAATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATTTAGTATGGGCAAGCAGGGAGCTAGAACGATTTGCCGTTAACCCTGGCCTGTTAGAAACATCAGAGGGATGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATTTAATGCAGTAGCAGTCCTCTATTGTGTACATCAAAGGATACAGGTACAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGTAGCAGCAGCTGACACTGACACAGGAAACAGCAGCCAAAATTACCCCATAGTGCAGAACCTCCAGGGGCAAATGGTACATCAGCCCCTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAAAAGGCCTTCAGCCCAGAAGTCATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCTTGGGATTAAATAAAATAGTAAGGATGTATAGCCCTACCAGTATTCTGGATATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAGAACTTTAAGAGCTGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATTCGAATCCAGATTGTAAGACTATTTTAAAAGCATTAGGACCAGCAGCAACACTAGAGGAAATGATGACAGCATGTCAAGGAGTGGGGGGACCAGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAAATTCAGTTAATGTAATGATGCAAAGAGGCAATTTTAGAAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACATCAAATGAAAGACTGTACAGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAG" @@ -1225,7 +1225,7 @@ "subtype_start": 2084, "subtype_end": 5096, "orientation": "forward", - "distance": 0.14456630109670976, + "distance": 0.1890827530448842, "protein": "FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED", "aminoacids": "FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*", "nucleotides": "TTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAGGGGGGCAATTTAAAGAAGCTTTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGCTTTATCAAAGTAAGACAGTATGATCAGATACCCATAGAAATCTGTGGACACAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGCTTGGTTGTACCTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTCAATAAGAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAATTCCCTTAGATAAAGAATTCAGGAAGTATACTGCATTTACCATACCTAGTACAAATAATGAGACACCAGGGATTAGGTATGAGTACAATGTGCTGCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGCAAAATCCAGATATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAACTGAGACAACATCTGTTAAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAGTGGACAGTACAGCCTATAATACTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTACGCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAGGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTTTAAGAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGCAATGGACAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTACAAAAGATAGCCACAGAAAGCATAGTAATATGGGGAAAAACTCCTAAATTTAGACTACCTATACAAAAAGAAACATGGGAGACATGGTGGGCAGAATACTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAATTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACTAAATTAGGCAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAGGTTATCTCCCTAACGGACACAACAAATCAAAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATCAGAAGTAAACATAGTAACAGACTCACAATATACATTAGGAATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAATCAGATAATAGAGCAGTTAATAAAAAAGGAAAAAGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGACAAACTAGTCAGTGCTGGAGTCAGGAGAGTACTATTTCTAGATGGAATAGATAAGGCCCAAGAAGACCATGAGAAATATCACAGTAATTGGAGAGCAATGGCTGGTGATTTTAATATACCCCCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCAAAAAGGAGAGGCCATGCATGGACAAGTAGATTGTAGTCCAGGAATATGGCAACTAGATTGTACACATCTAGAAGGGAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTCTCCTGAAACTAGCAGGGAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTAATGTGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCCATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTATAGTGCAGGGGAAAGAATAGTAGATATAATAGCAACAGACCTACAAACTAAAGAATTACAGAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGGAGAAAAGCAAAAATCATTAGGGATTATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG" @@ -1237,7 +1237,7 @@ "subtype_start": 5040, "subtype_end": 5619, "orientation": "forward", - "distance": 0.36979166666666674, + "distance": 0.37360555672490003, "protein": "MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGDIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH", "aminoacids": "MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGDIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH*", "nucleotides": "ATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATGTTTCAAAGAAAACTAAAGGATGGTTTTATAGACATCACTATGAAAGCACTCATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTGGTAGTAACAACATATTGGGGCCTGAATACAGGAGAAAGAGAATGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGAAAAAGGAAATATAGCACACAAGTTGACCCTAACCTAGCAGACCAACTAATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGAGATATAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGCTCTCTACAATACTTGGCACTAAAAGCATTAACAACACCAAAGAGAAGAAAGCCACCTTTACCTAGTGTTAGGAAACTGACAGAGGATAGATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAG" @@ -1249,7 +1249,7 @@ "subtype_start": 5558, "subtype_end": 5850, "orientation": "forward", - "distance": 0.4038461538461544, + "distance": 0.39444027047332864, "protein": "MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS", "aminoacids": "MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS*T", "nucleotides": "ATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAGAGCTTTTAGAGGAACTTAAGAATGAAGCGGTTAGACATTTTCCTAGGCCGTGGCTCCATGGCTTAGGACAACATATCTATGAAACTTATGGGGACACTTGGACAGGAGTGGAGGCCATAATAAGAACCCTGCAACAACTGCTGTTTATTCATTTCAGACTTGGGTGTCGACATAGCAGAATAGGCATTGTGCCACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACT" @@ -1261,7 +1261,7 @@ "subtype_start": 5830, "subtype_end": 6045, "orientation": "forward", - "distance": 0.29166666666666674, + "distance": 0.31992687385740404, "protein": "MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ", "aminoacids": "MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ*", "nucleotides": "ATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCACCCAGGAAGTCAGCCTAAAACTCCTTGTACTAACTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAAAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGTAA" @@ -1273,7 +1273,7 @@ "subtype_start": 5969, "subtype_end": 6045, "orientation": "forward", - "distance": 0.5769230769230769, + "distance": 0.48200514138817474, "protein": "MAGRSGDSDEELLKAVRLIKILYQSS", "aminoacids": "MAGRSGDSDEELLKAVRLIKILYQSS", "nucleotides": "ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGT" @@ -1285,7 +1285,7 @@ "subtype_start": 6061, "subtype_end": 6310, "orientation": "forward", - "distance": 0.6500000000000001, + "distance": 0.5118110236220472, "protein": "MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAEDSGNESEGDQEELSALMEMGHHAPGDVDDL", "aminoacids": "MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAEDSGNESEGDQEELSALMEMGHHAPGDVDDL*", "nucleotides": "ATGCAACCTCTGCACATAGCAGCAATAGTAGGATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGACCATAGTGTTAATAGAATATAGGAAAATATTAAGACAAAAAAGGATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAG" @@ -1297,7 +1297,7 @@ "subtype_start": 6224, "subtype_end": 8795, "orientation": "forward", - "distance": 0.4941588785046729, + "distance": 0.4435264018789581, "protein": "MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEVHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNITNTNSSSKEGKMAEEMRNCSFNITTEIRNKMQKEYALFYKLDVVPIDDDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYGNKTIVFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSGTETFRPGGGDMKDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL", "aminoacids": "MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEVHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNITNTNSSSKEGKMAEEMRNCSFNITTEIRNKMQKEYALFYKLDVVPIDDDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYGNKTIVFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSGTETFRPGGGDMKDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL*", "nucleotides": "ATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTGACAGTCTATTATGGGGTACCTGTATGGAAAGAAGCAAACACCACTCTATTTTGTGCATCGGATGCTAAAGCATATACCACAGAGGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGGATTGGAAAATGTGACAGAAAATTTTAACATGTGGAAAAATAACATGGTAGAACAGATGCATGAGGATGTAATCAATTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCACTAATCTGAATATTACTAATACCAATAGCAGTAGTAAGGAGGGAAAGATGGCGGAAGAAATGAGAAACTGCTCTTTCAATATCACCACAGAAATAAGAAATAAGATGCAGAAGGAATATGCACTTTTTTATAAACTTGATGTAGTACCAATAGATGATGATAATACAAGTTATACATTGATAAATTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCTATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAGGATAAGAAGTTCAATGGATCAGGACCATGTAAAAGTGTCAGCACAGTACAATGTACACATGGAATTAAGCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTTTAGCAGAAGAAGAGGTAGTAATTAGATCTGAAAATTTCACGAACAATGCTAAAACCATAATAGTACATCTGAAGGAACCTATACAAATTAATTGTACAAGACCCAACAACAATACAATGAAAAGTATCCCTCTAGGACCAGGAAGAGCATTCTATGCAACAGGAGCCATAATAGGAGATATAAGACAAGCACATTGTAACCTTAGTAGAAAAGCATGGAATAATACTTTAAAACAGGTAGTTGAAAAATTAAAAGAACAATATGGGAATAAAACAATAGTCTTTAATCACTCCTCAGGAGGGGACCCAGAAATTATAATGCATACTTTTAATTGTGGAGGGGAATTTTTCTATTGTAATACAACACAGCTGTTTAATAGTACTTGGAATAGTACTTGGACTGGGAATGCTACCGAATTAGATGGAAACATCACACTCCCATGCAGAATAAAACAGATTATAAACAGGTGGCAAGAAGTAGGAAAAGCAATGTATGCCCCTCCCATTAGAGGAAAAATTAGATGTTCATCAAATATTACAGGGTTACTATTAGTAAGAGATGGTGGTAACACGAGCGGGACTGAGACCTTCAGACCTGGAGGAGGAGATATGAAGGACAATTGGAGGAGTGAATTATATAAATATAAAGTAGTAAAAATTGAGCCATTAGGAGTAGCACCCACCAGGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAAGCCAGGCTGTTATTGTCTGGTATAGTGCAACAGCAAAACAATTTGCTAAGAGCTATTGAGGCGCAACAACATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTACAGGATCAACAGCGCCTGGGAATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCCTGGAATGCTAGTTGGAGTAATAAATCTCTGAATCAGATTTGGGATAACATGACCTGGATGGAGTGGGAAAGAGAAATTAACAATTACACAGACACAATATACACCTTAATTGAAAAGGCGCAGAACCAGCAGGAAAAGAATGAACAAGAATTATTGGAATTGGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAAATGGCTGTGGTACATAAAATTATTCATAATGATAGTAGGAGGATTGATAGGTTTAAGAATAGTTTTTGCTGTACTTGCTATAGTAAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGTCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAGCTTATTCAATGTCACAGCCATCGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAAGAGCTTGTAGAGCTCTTCTCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCATTGTTATAA" @@ -1309,7 +1309,7 @@ "subtype_start": 8376, "subtype_end": 8469, "orientation": "forward", - "distance": 0.28666666666666596, + "distance": 0.3161764705882347, "protein": "RPTSQPRGDPTGPKESKKKVEKETETDQFD", "aminoacids": "RPTSQPRGDPTGPKESKKKVEKETETDQFD**", "nucleotides": "AGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGA" @@ -1321,7 +1321,7 @@ "subtype_start": 8377, "subtype_end": 8653, "orientation": "forward", - "distance": 0.4285714285714286, + "distance": 0.40871934604904625, "protein": "DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVSLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE", "aminoacids": "DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVSLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE*CY*", "nucleotides": "GACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGTCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAG" @@ -1333,7 +1333,7 @@ "subtype_start": 8796, "subtype_end": 9417, "orientation": "forward", - "distance": 0.6162601626016186, + "distance": 0.49848743916874616, "protein": "MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDGEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPTSLHGVEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC", "aminoacids": "MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDGEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPTSLHGVEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC*H*", "nucleotides": "ATGGGGGGCAAGTGGTCAAAAAGTAGTGGGGGTGGATGGCCTGCTGTAAGGGAAAGAATGAGACGAACTGAGCCAGCAGCAGAAGGGGTGGGAGCAGTATCTCGAGACCTGGAAAGACATGGAGCAGTCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGCGCCTGGCTGGAAGCACAAGAAGAGGACGGTGAAGTGGGTTTTCCAGTCAGACCTCAGGTGCCTTTAAGACCAATGACTTTCAAAGGAGCTCTCGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCCCAAAAAAGACAAGATATCCTTGACCTGTGGGTCTACAACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGACCAGATATCCACTGACCTTTGGGTGGTGTTTCAAGCTAGTACCAGTGGAGCCAGAAGAGGCCAATCAAGGAGAGAACAACTGCTTGTTACACCCTACGAGCCTGCATGGGGTGGAGGACCCGGAAAAAGAAGTATTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCACATGGCCCGAGAGAAGCATCCGGAGTACTACAAAGACTGCTGACATTGA" @@ -1347,7 +1347,7 @@ "subtype_start": 789, "subtype_end": 2292, "orientation": "forward", - "distance": 0.2571999999999999, + "distance": 0.2932056543547651, "protein": "MGARASILSGGKLDEWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSVNVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE", "aminoacids": "MGARASILSGGKLDEWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSVNVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE*R*", "nucleotides": "ATGGGTGCGAGAGCGTCAATATTAAGCGGGGGAAAATTAGATGAATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATTTAGTATGGGCAAGCAGGGAGCTAGAACGATTTGCCGTTAACCCTGGCCTGTTAGAAACATCAGAGGGATGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATTTAATGCAGTAGCAGTCCTCTATTGTGTACATCAAAGGATACAGGTACAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGTAGCAGCAGCTGACACTGACACAGGAAACAGCAGCCAAAATTACCCCATAGTGCAGAACCTCCAGGGGCAAATGGTACATCAGCCCCTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAAAAGGCCTTCAGCCCAGAAGTCATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCTTGGGATTAAATAAAATAGTAAGGATGTATAGCCCTACCAGTATTCTGGATATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAGAACTTTAAGAGCTGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATTCGAATCCAGATTGTAAGACTATTTTAAAAGCATTAGGACCAGCAGCAACACTAGAGGAAATGATGACAGCATGTCAAGGAGTGGGGGGACCAGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAAATTCAGTTAATGTAATGATGCAAAGAGGCAATTTTAGAAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACATCAAATGAAAGACTGTACAGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAG" @@ -1359,7 +1359,7 @@ "subtype_start": 2084, "subtype_end": 5096, "orientation": "forward", - "distance": 0.14456630109670976, + "distance": 0.1890827530448842, "protein": "FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED", "aminoacids": "FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*", "nucleotides": "TTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAGGGGGGCAATTTAAAGAAGCTTTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGCTTTATCAAAGTAAGACAGTATGATCAGATACCCATAGAAATCTGTGGACACAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGCTTGGTTGTACCTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTCAATAAGAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAATTCCCTTAGATAAAGAATTCAGGAAGTATACTGCATTTACCATACCTAGTACAAATAATGAGACACCAGGGATTAGGTATGAGTACAATGTGCTGCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGCAAAATCCAGATATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAACTGAGACAACATCTGTTAAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAGTGGACAGTACAGCCTATAATACTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTACGCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAGGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTTTAAGAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGCAATGGACAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTACAAAAGATAGCCACAGAAAGCATAGTAATATGGGGAAAAACTCCTAAATTTAGACTACCTATACAAAAAGAAACATGGGAGACATGGTGGGCAGAATACTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAATTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACTAAATTAGGCAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAGGTTATCTCCCTAACGGACACAACAAATCAAAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATCAGAAGTAAACATAGTAACAGACTCACAATATACATTAGGAATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAATCAGATAATAGAGCAGTTAATAAAAAAGGAAAAAGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGACAAACTAGTCAGTGCTGGAGTCAGGAGAGTACTATTTCTAGATGGAATAGATAAGGCCCAAGAAGACCATGAGAAATATCACAGTAATTGGAGAGCAATGGCTGGTGATTTTAATATACCCCCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCAAAAAGGAGAGGCCATGCATGGACAAGTAGATTGTAGTCCAGGAATATGGCAACTAGATTGTACACATCTAGAAGGGAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTCTCCTGAAACTAGCAGGGAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTAATGTGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCCATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTATAGTGCAGGGGAAAGAATAGTAGATATAATAGCAACAGACCTACAAACTAAAGAATTACAGAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGGAGAAAAGCAAAAATCATTAGGGATTATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG" @@ -1371,7 +1371,7 @@ "subtype_start": 5040, "subtype_end": 5619, "orientation": "forward", - "distance": 0.36979166666666674, + "distance": 0.37360555672490003, "protein": "MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGDIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH", "aminoacids": "MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGDIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH*", "nucleotides": "ATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATGTTTCAAAGAAAACTAAAGGATGGTTTTATAGACATCACTATGAAAGCACTCATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTGGTAGTAACAACATATTGGGGCCTGAATACAGGAGAAAGAGAATGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGAAAAAGGAAATATAGCACACAAGTTGACCCTAACCTAGCAGACCAACTAATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGAGATATAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGCTCTCTACAATACTTGGCACTAAAAGCATTAACAACACCAAAGAGAAGAAAGCCACCTTTACCTAGTGTTAGGAAACTGACAGAGGATAGATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAG" @@ -1383,7 +1383,7 @@ "subtype_start": 5558, "subtype_end": 5850, "orientation": "forward", - "distance": 0.4038461538461544, + "distance": 0.39444027047332864, "protein": "MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS", "aminoacids": "MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS*T", "nucleotides": "ATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAGAGCTTTTAGAGGAACTTAAGAATGAAGCGGTTAGACATTTTCCTAGGCCGTGGCTCCATGGCTTAGGACAACATATCTATGAAACTTATGGGGACACTTGGACAGGAGTGGAGGCCATAATAAGAACCCTGCAACAACTGCTGTTTATTCATTTCAGACTTGGGTGTCGACATAGCAGAATAGGCATTGTGCCACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACT" @@ -1395,7 +1395,7 @@ "subtype_start": 5830, "subtype_end": 6045, "orientation": "forward", - "distance": 0.29166666666666674, + "distance": 0.31992687385740404, "protein": "MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ", "aminoacids": "MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ*", "nucleotides": "ATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCACCCAGGAAGTCAGCCTAAAACTCCTTGTACTAACTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAAAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGTAA" @@ -1407,7 +1407,7 @@ "subtype_start": 5969, "subtype_end": 6045, "orientation": "forward", - "distance": 0.5769230769230769, + "distance": 0.48200514138817474, "protein": "MAGRSGDSDEELLKAVRLIKILYQSS", "aminoacids": "MAGRSGDSDEELLKAVRLIKILYQSS", "nucleotides": "ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGT" @@ -1419,7 +1419,7 @@ "subtype_start": 6061, "subtype_end": 6310, "orientation": "forward", - "distance": 0.6500000000000001, + "distance": 0.5118110236220472, "protein": "MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAEDSGNESEGDQEELSALMEMGHHAPGDVDDL", "aminoacids": "MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAEDSGNESEGDQEELSALMEMGHHAPGDVDDL*", "nucleotides": "ATGCAACCTCTGCACATAGCAGCAATAGTAGGATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGACCATAGTGTTAATAGAATATAGGAAAATATTAAGACAAAAAAGGATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAG" @@ -1431,7 +1431,7 @@ "subtype_start": 6224, "subtype_end": 8795, "orientation": "forward", - "distance": 0.4941588785046729, + "distance": 0.4435264018789581, "protein": "MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEVHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNITNTNSSSKEGKMAEEMRNCSFNITTEIRNKMQKEYALFYKLDVVPIDDDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYGNKTIVFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSGTETFRPGGGDMKDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL", "aminoacids": "MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEVHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNITNTNSSSKEGKMAEEMRNCSFNITTEIRNKMQKEYALFYKLDVVPIDDDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYGNKTIVFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSGTETFRPGGGDMKDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL*", "nucleotides": "ATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTGACAGTCTATTATGGGGTACCTGTATGGAAAGAAGCAAACACCACTCTATTTTGTGCATCGGATGCTAAAGCATATACCACAGAGGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGGATTGGAAAATGTGACAGAAAATTTTAACATGTGGAAAAATAACATGGTAGAACAGATGCATGAGGATGTAATCAATTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCACTAATCTGAATATTACTAATACCAATAGCAGTAGTAAGGAGGGAAAGATGGCGGAAGAAATGAGAAACTGCTCTTTCAATATCACCACAGAAATAAGAAATAAGATGCAGAAGGAATATGCACTTTTTTATAAACTTGATGTAGTACCAATAGATGATGATAATACAAGTTATACATTGATAAATTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCTATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAGGATAAGAAGTTCAATGGATCAGGACCATGTAAAAGTGTCAGCACAGTACAATGTACACATGGAATTAAGCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTTTAGCAGAAGAAGAGGTAGTAATTAGATCTGAAAATTTCACGAACAATGCTAAAACCATAATAGTACATCTGAAGGAACCTATACAAATTAATTGTACAAGACCCAACAACAATACAATGAAAAGTATCCCTCTAGGACCAGGAAGAGCATTCTATGCAACAGGAGCCATAATAGGAGATATAAGACAAGCACATTGTAACCTTAGTAGAAAAGCATGGAATAATACTTTAAAACAGGTAGTTGAAAAATTAAAAGAACAATATGGGAATAAAACAATAGTCTTTAATCACTCCTCAGGAGGGGACCCAGAAATTATAATGCATACTTTTAATTGTGGAGGGGAATTTTTCTATTGTAATACAACACAGCTGTTTAATAGTACTTGGAATAGTACTTGGACTGGGAATGCTACCGAATTAGATGGAAACATCACACTCCCATGCAGAATAAAACAGATTATAAACAGGTGGCAAGAAGTAGGAAAAGCAATGTATGCCCCTCCCATTAGAGGAAAAATTAGATGTTCATCAAATATTACAGGGTTACTATTAGTAAGAGATGGTGGTAACACGAGCGGGACTGAGACCTTCAGACCTGGAGGAGGAGATATGAAGGACAATTGGAGGAGTGAATTATATAAATATAAAGTAGTAAAAATTGAGCCATTAGGAGTAGCACCCACCAGGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAAGCCAGGCTGTTATTGTCTGGTATAGTGCAACAGCAAAACAATTTGCTAAGAGCTATTGAGGCGCAACAACATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTACAGGATCAACAGCGCCTGGGAATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCCTGGAATGCTAGTTGGAGTAATAAATCTCTGAATCAGATTTGGGATAACATGACCTGGATGGAGTGGGAAAGAGAAATTAACAATTACACAGACACAATATACACCTTAATTGAAAAGGCGCAGAACCAGCAGGAAAAGAATGAACAAGAATTATTGGAATTGGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAAATGGCTGTGGTACATAAAATTATTCATAATGATAGTAGGAGGATTGATAGGTTTAAGAATAGTTTTTGCTGTACTTGCTATAGTAAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGTCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAGCTTATTCAATGTCACAGCCATCGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAAGAGCTTGTAGAGCTCTTCTCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCATTGTTATAA" @@ -1443,7 +1443,7 @@ "subtype_start": 8376, "subtype_end": 8469, "orientation": "forward", - "distance": 0.28666666666666596, + "distance": 0.3161764705882347, "protein": "RPTSQPRGDPTGPKESKKKVEKETETDQFD", "aminoacids": "RPTSQPRGDPTGPKESKKKVEKETETDQFD**", "nucleotides": "AGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGA" @@ -1455,7 +1455,7 @@ "subtype_start": 8377, "subtype_end": 8653, "orientation": "forward", - "distance": 0.4285714285714286, + "distance": 0.40871934604904625, "protein": "DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVSLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE", "aminoacids": "DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVSLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE*CY*", "nucleotides": "GACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGTCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAG" @@ -1467,7 +1467,7 @@ "subtype_start": 8796, "subtype_end": 9417, "orientation": "forward", - "distance": 0.6162601626016186, + "distance": 0.49848743916874616, "protein": "MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDGEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPTSLHGVEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC", "aminoacids": "MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDGEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPTSLHGVEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC*H*", "nucleotides": "ATGGGGGGCAAGTGGTCAAAAAGTAGTGGGGGTGGATGGCCTGCTGTAAGGGAAAGAATGAGACGAACTGAGCCAGCAGCAGAAGGGGTGGGAGCAGTATCTCGAGACCTGGAAAGACATGGAGCAGTCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGCGCCTGGCTGGAAGCACAAGAAGAGGACGGTGAAGTGGGTTTTCCAGTCAGACCTCAGGTGCCTTTAAGACCAATGACTTTCAAAGGAGCTCTCGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCCCAAAAAAGACAAGATATCCTTGACCTGTGGGTCTACAACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGACCAGATATCCACTGACCTTTGGGTGGTGTTTCAAGCTAGTACCAGTGGAGCCAGAAGAGGCCAATCAAGGAGAGAACAACTGCTTGTTACACCCTACGAGCCTGCATGGGGTGGAGGACCCGGAAAAAGAAGTATTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCACATGGCCCGAGAGAAGCATCCGGAGTACTACAAAGACTGCTGACATTGA" @@ -1481,7 +1481,7 @@ "subtype_start": 789, "subtype_end": 2292, "orientation": "forward", - "distance": 0.22580000000000022, + "distance": 0.26696618585954146, "protein": "MGARASVLSGGELDRWEKIYLRPGGKKKYRLKHIVWASRELERFAVNPGLLESSEGCRQILGQLQPALQTGSEELRSLYNTVAVLYCVHQRINVKDTKEALDKIEEEQNKSKKKAQQAAADTGNSSNSQVSQNYPIVQNLQGQMVHQPISPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINDEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHTPPIPVGEIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFYKTLRAEQASQDVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTKSASIMVQGGNFRNQRKNVKCFNCGKEGHIARNCRAPRKKGCWKCGREGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPAESFRFGEEATAPPQKQETKDQELYPLASLRSLFGNDP", "aminoacids": "MGARASVLSGGELDRWEKIYLRPGGKKKYRLKHIVWASRELERFAVNPGLLESSEGCRQILGQLQPALQTGSEELRSLYNTVAVLYCVHQRINVKDTKEALDKIEEEQNKSKKKAQQAAADTGNSSNSQVSQNYPIVQNLQGQMVHQPISPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINDEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHTPPIPVGEIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFYKTLRAEQASQDVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTKSASIMVQGGNFRNQRKNVKCFNCGKEGHIARNCRAPRKKGCWKCGREGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPAESFRFGEEATAPPQKQETKDQELYPLASLRSLFGNDP*YQ*", "nucleotides": "ATGGGTGCGAGAGCGTCAGTATTAAGCGGCGGAGAATTAGATAGATGGGAAAAAATTTACCTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTCAACCCTGGCCTGTTAGAGTCATCAGAAGGCTGCAGGCAAATTCTGGGACAGCTACAACCAGCCCTTCAGACAGGATCAGAAGAACTTAGATCATTATATAATACAGTAGCAGTCCTCTATTGTGTACATCAAAGGATAAATGTAAAAGACACCAAGGAAGCTCTAGACAAAATAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAACAAGCAGCAGCTGACACAGGAAACAGCAGCAACAGCCAGGTCAGCCAAAATTACCCTATAGTGCAGAACCTACAGGGGCAAATGGTACATCAACCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAATAGAAGAAAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCACTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAGATGTTAAAAGAAACCATCAATGATGAGGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGCCCTATTGCACCAGGCCAGATGAGGGAACCAAGGGGAAGTGACATAGCAGGAACCACTAGTACCCTTCAGGAACAAATAGGATGGATGACACATACTCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCCTGGGGTTAAATAAAATAGTAAGAATGTATAGCCCTGTCAGCATTTTGGACATAAGACAAGGACCAAAGGAACCCTTTAGGGATTATGTAGACCGGTTCTATAAAACTCTAAGGGCTGAGCAAGCGTCACAGGATGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAATCCAGATTGTAAGACCATTTTAAAAGCATTAGGACCAGCAGCTACATTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGGGGACCCGGCCACAAGGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAACAAAATCAGCCTCCATAATGGTGCAGGGAGGCAATTTTAGGAACCAAAGAAAGAATGTTAAGTGTTTCAATTGTGGCAAAGAAGGACACATAGCCAGAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAGGGAAGGACACCAAATGAAAGATTGTACTGAGAGACAGGCTAATTTTTTAGGGAAGATTTGGCCTTCCCACAAGGGGAGGCCAGGGAATTTTCTCCAGAGCAGACCAGAGCCAACAGCCCCGCCAGCAGAGAGCTTCAGGTTTGGGGAAGAGGCAACAGCTCCCCCTCAGAAGCAGGAGACGAAGGACCAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCATAATATCAATAA" @@ -1493,7 +1493,7 @@ "subtype_start": 2084, "subtype_end": 5096, "orientation": "forward", - "distance": 0.21934197407776668, + "distance": 0.2613261112298957, "protein": "FFREDLAFPQGEAREFSPEQTRANSPASRELQVWGRGNSSPSEAGDEGPGTVSFSFPQITLWQRPIISIKIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYDQVPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPRVKQWPLTEEKIKALIEICAEMEKEGKITKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKRKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNEAPGVRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKENPDIVIYQYMDDLYVGSDLEIEQHRTKIEELRQHLLGWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPDKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTEVVPLTEEAELELAENREILKEPVHGAYYDPSKDLIAEVQKQGGDQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKIALEAIVIWGKTPKFKLPIQKETWEMWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIIGAETFYVDGAANRETKLGKAGYVTDRGRQKVVSLMDTTNQRTELHAIHLALQDSGSTVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHKGIGGNEQVDKLVSNGIRKILFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEPMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIAAETGQETAYFILKLAGRWPVKIIHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDSREPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKILRDYGKQMAGDDCVASRQDED", "aminoacids": "FFREDLAFPQGEAREFSPEQTRANSPASRELQVWGRGNSSPSEAGDEGPGTVSFSFPQITLWQRPIISIKIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYDQVPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPRVKQWPLTEEKIKALIEICAEMEKEGKITKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKRKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNEAPGVRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKENPDIVIYQYMDDLYVGSDLEIEQHRTKIEELRQHLLGWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPDKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTEVVPLTEEAELELAENREILKEPVHGAYYDPSKDLIAEVQKQGGDQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKIALEAIVIWGKTPKFKLPIQKETWEMWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIIGAETFYVDGAANRETKLGKAGYVTDRGRQKVVSLMDTTNQRTELHAIHLALQDSGSTVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHKGIGGNEQVDKLVSNGIRKILFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEPMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIAAETGQETAYFILKLAGRWPVKIIHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDSREPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKILRDYGKQMAGDDCVASRQDED*NMEQFSKTPYAYFKESSEMGLQTSL*", "nucleotides": "TTTTTTAGGGAAGATTTGGCCTTCCCACAAGGGGAGGCCAGGGAATTTTCTCCAGAGCAGACCAGAGCCAACAGCCCCGCCAGCAGAGAGCTTCAGGTTTGGGGAAGAGGCAACAGCTCCCCCTCAGAAGCAGGAGACGAAGGACCAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCATAATATCAATAAAAATAGGAGGGCAACTAAAAGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAATTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGGTACCCATAGAAATTTGTGGACATAAAGCTATAGGTACAGTATTAATAGGACCTACACCAGTCAACATAATTGGAAGAAATCTGTTGACCCAGCTTGGTTGCACTTTAAATTTTCCCATCAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAGAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAGGCATTAATAGAAATTTGTGCAGAAATGGAAAAGGAAGGGAAAATTACAAAAATTGGGCCTGAGAATCCATATAATACTCCAGTGTTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCCGAGAACTTAATAAGAGAACACAAGACTTCTGGGAAGTTCAACTAGGAATACCACATCCCGCAGGGTTAAAAAGGAAAAAATCAGTAACAGTACTAGATGTGGGTGATGCATATTTTTCAGTTCCTTTAGACAAAGACTTCAGAAAGTATACTGCATTTACCATACCCAGTATAAACAATGAGGCACCAGGAGTTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGGAAAATCCAGACATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGAGCAGCACAGAACAAAAATAGAGGAACTGAGACAACATCTGTTGGGGTGGGGACTCACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTTCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATACAGCTGCCAGACAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAGTTGAATTGGGCAAGCCAGATCTATCCAGGGATTAAAGTAAAGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAAGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAGATTCTAAAAGAACCAGTACATGGAGCATATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGGGGAGACCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGGAAATATGCAAGAACGAGGGGTGCCCACACTAATGATGTAAAACAGTTAACAGAGGCAGTGCAAAAAATAGCCCTAGAAGCCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTACCTATACAAAAGGAAACATGGGAAATGTGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAATTTGTCAATACCCCTCCCTTAGTAAAATTATGGTACCAGTTAGAGAAAGAACCCATAATAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAGACTAAATTAGGAAAAGCAGGGTATGTTACGGACAGAGGAAGACAAAAGGTTGTCTCCCTAATGGACACAACAAATCAGAGGACTGAGTTACACGCAATTCATCTAGCTTTGCAGGATTCAGGATCAACAGTAAACATAGTGACAGACTCACAATATGCCTTAGGGATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAGTCAAATAATAGAGCAGCTAATAAAAAAGGAAAAGATTTACCTGGCATGGGTCCCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTAATGGAATCAGAAAAATACTATTTCTGGATGGAATAGATAAGGCCCAAGAAGAACATGAAAAATATCACAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAGTGTCAGTTAAAAGGAGAACCTATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAACTGGATTGTACACATTTAGAAGGAAAAATTATCCTGGTAGCAGTTCATGTAGCCAGTGGATACATAGAAGCAGAAGTTATTGCAGCAGAAACAGGGCAGGAAACAGCATACTTTATCTTAAAATTGGCAGGAAGATGGCCAGTAAAAATAATACATACAGACAATGGCAGCAATTTCACCAGCACTACGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGTATTCCCTACAATCCTCAAAGTCAAGGAGTAGTAGAATCTATGAATAATGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAATAGACATAATAGCAACAGACATACAAACTAAAGAACTACAAAAACAAATTTCAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGAACCACTTTGGAAAGGACCAGCAAAGCTCCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATCCTTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATATTTCAAAGAAAGCTCAGAGATGGGTTTACAGACATCACTATGA" @@ -1505,7 +1505,7 @@ "subtype_start": 5040, "subtype_end": 5619, "orientation": "forward", - "distance": 0.38020833333333326, + "distance": 0.38012913976254936, "protein": "MENRWQVMIVWQVDRMRIRTWNSLVKHHMHISKKAQRWVYRHHYESHNPKTSSEVHIPLGEARLVIKTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPGLADQLIHLYYFDCFSESAIRNAILGHRVSPRCEYQAGHNKVGSLQYLALTALITPKRRKPPLPSVTKLTEDRWNKSQRTKGHKGSHTMNGH", "aminoacids": "MENRWQVMIVWQVDRMRIRTWNSLVKHHMHISKKAQRWVYRHHYESHNPKTSSEVHIPLGEARLVIKTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPGLADQLIHLYYFDCFSESAIRNAILGHRVSPRCEYQAGHNKVGSLQYLALTALITPKRRKPPLPSVTKLTEDRWNKSQRTKGHKGSHTMNGH*", "nucleotides": "ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATATTTCAAAGAAAGCTCAGAGATGGGTTTACAGACATCACTATGAAAGCCATAATCCAAAAACAAGTTCAGAAGTACACATCCCATTAGGGGAAGCAAGATTGGTAATAAAAACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCATTTGGGCCAGGGAGTATCCATAGAATGGAGGAAAAGGAGATATAGCACACAAGTAGACCCTGGCCTGGCAGACCAACTAATTCACCTGTATTATTTTGATTGTTTTTCAGAATCTGCTATAAGGAATGCCATATTAGGACATAGAGTTAGTCCTAGGTGTGAATATCAGGCAGGACATAACAAGGTAGGATCCCTACAATACTTGGCATTAACAGCATTAATAACACCAAAAAGGAGAAAGCCACCTTTGCCCAGTGTTACAAAATTAACAGAGGACAGATGGAACAAGTCCCAGAGGACCAAGGGCCACAAAGGGAGCCATACAATGAATGGACATTAG" @@ -1517,7 +1517,7 @@ "subtype_start": 5558, "subtype_end": 5850, "orientation": "forward", - "distance": 0.5192307692307698, + "distance": 0.4557731262660367, "protein": "MEQVPEDQGPQREPYNEWTLELLEELKSEAVRHFPRPWLHSLGQYIYETYGDTWAGVEDIIRTLQQLLFIHFRIGCQHSRIGIIRQRRARNGASRS", "aminoacids": "MEQVPEDQGPQREPYNEWTLELLEELKSEAVRHFPRPWLHSLGQYIYETYGDTWAGVEDIIRTLQQLLFIHFRIGCQHSRIGIIRQRRARNGASRS*L", "nucleotides": "ATGGAACAAGTCCCAGAGGACCAAGGGCCACAAAGGGAGCCATACAATGAATGGACATTAGAGCTCTTAGAAGAGCTTAAGAGTGAAGCTGTTAGGCATTTTCCTAGACCATGGCTTCATAGCTTAGGACAATATATCTATGAAACTTATGGAGATACTTGGGCAGGGGTGGAAGACATAATAAGAACCCTGCAACAACTGTTGTTCATTCATTTCAGAATTGGGTGTCAACATAGCAGGATAGGAATTATTCGACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGCTT" @@ -1529,7 +1529,7 @@ "subtype_start": 5830, "subtype_end": 6045, "orientation": "forward", - "distance": 0.5972222222222223, + "distance": 0.49064354176175273, "protein": "MEPVDPSLEPWKHPGSQPMTACNNCYCKRCCFHCQVCFTRKGLGISYGRKKRRQRRRASHSSQNHQAALPEQ", "aminoacids": "MEPVDPSLEPWKHPGSQPMTACNNCYCKRCCFHCQVCFTRKGLGISYGRKKRRQRRRASHSSQNHQAALPEQ*", "nucleotides": "ATGGAGCCAGTAGATCCTAGCTTAGAGCCCTGGAAACATCCAGGAAGTCAACCTATGACTGCTTGTAACAATTGCTATTGTAAACGGTGTTGCTTTCATTGCCAAGTTTGCTTCACAAGAAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTTCTCACAGCAGTCAGAATCATCAAGCGGCTCTACCAGAGCAGTAA" @@ -1541,7 +1541,7 @@ "subtype_start": 5969, "subtype_end": 6045, "orientation": "forward", - "distance": 0.6538461538461537, + "distance": 0.5132850241545894, "protein": "MAGRSGDSDEELLTAVRIIKRLYQSS", "aminoacids": "MAGRSGDSDEELLTAVRIIKRLYQSS", "nucleotides": "ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTTCTCACAGCAGTCAGAATCATCAAGCGGCTCTACCAGAGCAGT" @@ -1553,7 +1553,7 @@ "subtype_start": 6061, "subtype_end": 6310, "orientation": "forward", - "distance": 0.780487804878049, + "distance": 0.5572971090212471, "protein": "MHILEIAAIVGLVVAAIIAIVVWSIVLIEYRKILRQRKIDRLIDRIRERAEDSGNESDGDQEELSAIVEMGHLVPWDGDDM", "aminoacids": "MHILEIAAIVGLVVAAIIAIVVWSIVLIEYRKILRQRKIDRLIDRIRERAEDSGNESDGDQEELSAIVEMGHLVPWDGDDM*", "nucleotides": "ATGCATATCTTAGAAATAGCAGCAATAGTAGGATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGTCTATAGTATTAATAGAATATAGGAAAATTTTAAGACAAAGGAAAATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAAAGTGACGGGGACCAGGAGGAATTATCAGCAATTGTGGAGATGGGGCATCTTGTTCCTTGGGATGGTGATGATATGTAG" @@ -1565,7 +1565,7 @@ "subtype_start": 6224, "subtype_end": 8795, "orientation": "forward", - "distance": 0.5768691588785053, + "distance": 0.48198180611408303, "protein": "MKVTGTRRNYQQLWRWGILFLGMVMICSARNLWVTVYYGVPVWKEATTTLFCASDAKAYETEKHNVWATHACVPTDPSPQEVALENVTETFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDNLNLNRPNNNTCSNNTNYNITEKGEIKNCSFNVTTGIRDRVTKEHALFYKLDVVPIDEGSGNTTGKYRMINCNTSVITQACPKVSFEPIPIHFCAPAGFAILKCKDKKFNGTGECRNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVIRSANLSNNAKTIIVQLNKSVKINCTRPNNNTRRSIHIGPGRAFYGTDIIGDIRQAHCNISGKDWNDTLKQIVIKLKEKFENKTIVFTQSSGGDPEIVMHSFNCGGEFFYCNTTQLFNSTWNNNTWNGTDNWNGTESNSTITLPCRIKQIINLWQEVGRAMYAPPIQGQIRCSSNITGLLLVRDGGSNNSSNDTETFRPGGGDMRDNWRSELYKYKVVKIEPLGIAPTHAKRRVVQREKRAMGLGAFFLGFLGAAGSTMGAASVTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLALERYLKDQQLLGIWGCSGKLICTTNVPWNISWNPRWNRSLDEIWTNMTWKQWEKEIDNYTDIIYNLIEQSQNQQEQNEQDLLALDKWASLWNWFDITQWLWYIKIFIMIVGGLIGLRIVFTILSIVNRVRQGYSPLSLQTLLPTQRGPDRPEGTEEGGGERDRGTSTRLVHGFLALIWDDLRSLFLFSYHRLRDLLLIAARIVELLGRRGWEALKYWWNLLQYWSQEIKNSAVSLLNTTAIAVAEGTDRIIEVLQRGFRAILHIPTRIRQGLERALL", "aminoacids": "MKVTGTRRNYQQLWRWGILFLGMVMICSARNLWVTVYYGVPVWKEATTTLFCASDAKAYETEKHNVWATHACVPTDPSPQEVALENVTETFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDNLNLNRPNNNTCSNNTNYNITEKGEIKNCSFNVTTGIRDRVTKEHALFYKLDVVPIDEGSGNTTGKYRMINCNTSVITQACPKVSFEPIPIHFCAPAGFAILKCKDKKFNGTGECRNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVIRSANLSNNAKTIIVQLNKSVKINCTRPNNNTRRSIHIGPGRAFYGTDIIGDIRQAHCNISGKDWNDTLKQIVIKLKEKFENKTIVFTQSSGGDPEIVMHSFNCGGEFFYCNTTQLFNSTWNNNTWNGTDNWNGTESNSTITLPCRIKQIINLWQEVGRAMYAPPIQGQIRCSSNITGLLLVRDGGSNNSSNDTETFRPGGGDMRDNWRSELYKYKVVKIEPLGIAPTHAKRRVVQREKRAMGLGAFFLGFLGAAGSTMGAASVTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLALERYLKDQQLLGIWGCSGKLICTTNVPWNISWNPRWNRSLDEIWTNMTWKQWEKEIDNYTDIIYNLIEQSQNQQEQNEQDLLALDKWASLWNWFDITQWLWYIKIFIMIVGGLIGLRIVFTILSIVNRVRQGYSPLSLQTLLPTQRGPDRPEGTEEGGGERDRGTSTRLVHGFLALIWDDLRSLFLFSYHRLRDLLLIAARIVELLGRRGWEALKYWWNLLQYWSQEIKNSAVSLLNTTAIAVAEGTDRIIEVLQRGFRAILHIPTRIRQGLERALL*", "nucleotides": "ATGAAAGTGACGGGGACCAGGAGGAATTATCAGCAATTGTGGAGATGGGGCATCTTGTTCCTTGGGATGGTGATGATATGTAGTGCCAGAAACTTGTGGGTCACAGTCTATTATGGGGTACCTGTATGGAAAGAAGCAACTACCACTCTATTTTGTGCATCAGATGCTAAAGCATATGAGACAGAGAAGCATAATGTTTGGGCAACCCATGCCTGTGTACCCACAGACCCCAGCCCACAGGAAGTAGCATTGGAAAATGTGACAGAAACATTTAACATGTGGAAAAATGACATGGTAGAGCAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGCCTAAAGCCATGTGTGAAACTAACCCCACTCTGTGTTACTTTAAATTGCACTGATAATTTAAATCTAAATCGCCCTAACAATAATACTTGTAGTAATAATACTAATTATAATATAACGGAAAAAGGAGAAATAAAAAACTGCTCTTTCAATGTCACCACAGGAATAAGAGATAGGGTGACAAAAGAACATGCACTTTTCTATAAACTTGATGTAGTACCAATAGATGAAGGTAGTGGAAATACTACGGGCAAATATAGGATGATAAATTGTAACACCTCAGTCATTACACAAGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTTTTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAAGATAAGAAATTCAATGGAACAGGAGAATGTAGAAATGTCAGCACAGTACAATGTACACATGGAATTAGGCCAGTAGTATCAACTCAACTGCTGCTGAACGGCAGTCTAGCAGAAGAAGAGATAGTAATTAGATCTGCCAATCTCTCGAACAATGCTAAAACCATAATAGTACAGCTGAATAAATCTGTAAAAATTAATTGTACAAGACCCAACAATAATACAAGAAGAAGTATACACATAGGACCAGGGAGGGCATTTTATGGAACAGACATAATAGGGGATATAAGACAAGCGCATTGTAACATTAGTGGGAAAGATTGGAATGACACTTTAAAACAGATAGTTATAAAATTAAAAGAAAAATTTGAGAATAAAACAATAGTCTTTACTCAATCCTCAGGAGGGGACCCAGAGATAGTGATGCATAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAATACAACACAGCTGTTTAATAGTACTTGGAATAATAATACTTGGAATGGTACTGATAATTGGAATGGTACTGAATCAAATAGCACTATCACACTCCCATGCAGAATAAAACAAATTATAAACTTGTGGCAGGAAGTAGGAAGAGCAATGTATGCCCCTCCCATCCAAGGGCAAATTAGATGTTCATCAAATATTACAGGGCTGCTGCTAGTAAGAGATGGTGGAAGCAACAATAGTAGTAATGATACAGAGACCTTCAGGCCTGGAGGAGGAGATATGAGGGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTCAAAATTGAACCATTAGGAATAGCACCCACCCATGCAAAGAGAAGAGTGGTGCAAAGGGAAAAAAGAGCAATGGGACTTGGAGCTTTCTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAGCAGCAAAACAATTTGCTGAGAGCTATTGAGGCGCAACAGCATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTTTGGAAAGATACCTAAAGGATCAACAGCTCCTGGGGATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTAATGTGCCCTGGAATATTAGTTGGAACCCTAGATGGAATAGATCTCTAGATGAGATTTGGACTAACATGACCTGGAAGCAGTGGGAAAAGGAAATTGACAATTACACAGACATAATATATAACTTAATTGAACAATCACAGAACCAACAAGAACAGAATGAACAAGACTTATTGGCATTAGATAAGTGGGCAAGTTTGTGGAATTGGTTTGACATTACACAGTGGCTATGGTATATAAAAATATTCATAATGATAGTAGGAGGCTTGATAGGTTTAAGAATAGTTTTTACTATACTGTCTATAGTAAATAGAGTTAGGCAGGGATACTCACCATTGTCATTGCAGACCCTCCTCCCAACCCAGAGGGGACCCGACAGGCCCGAAGGAACAGAAGAAGGAGGTGGAGAGAGAGACAGAGGCACATCCACGAGATTAGTGCATGGATTCTTAGCACTCATCTGGGACGACCTGCGGAGCCTGTTCCTCTTCAGTTACCACCGCTTGAGAGACTTACTCTTGATTGCGGCGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCACTGAAGTATTGGTGGAATCTCCTGCAGTATTGGAGTCAGGAAATAAAGAATAGTGCAGTTAGCTTGCTCAACACCACAGCAATAGCAGTAGCTGAGGGGACAGATAGGATTATAGAAGTATTACAAAGAGGCTTTAGAGCTATTCTCCACATACCTACACGAATAAGACAGGGCTTAGAAAGGGCTTTGCTATAA" @@ -1577,7 +1577,7 @@ "subtype_start": 8376, "subtype_end": 8469, "orientation": "forward", - "distance": 0.4866666666666659, + "distance": 0.439759036144578, "protein": "RPSSQPRGDPTGPKEQKKEVERETEAHPRD", "aminoacids": "RPSSQPRGDPTGPKEQKKEVERETEAHPRD*", "nucleotides": "AGACCCTCCTCCCAACCCAGAGGGGACCCGACAGGCCCGAAGGAACAGAAGAAGGAGGTGGAGAGAGAGACAGAGGCACATCCACGAGATTAG" @@ -1589,7 +1589,7 @@ "subtype_start": 8377, "subtype_end": 8653, "orientation": "forward", - "distance": 0.4285714285714286, + "distance": 0.40871934604904625, "protein": "DPPPNPEGTRQARRNRRRRWRERQRHIHEISAWILSTHLGRPAEPVPLQLPPLERLTLDCGEDCGTSGTQGVGSTEVLVESPAVLESGNKE", "aminoacids": "DPPPNPEGTRQARRNRRRRWRERQRHIHEISAWILSTHLGRPAEPVPLQLPPLERLTLDCGEDCGTSGTQGVGSTEVLVESPAVLESGNKE*", "nucleotides": "GACCCTCCTCCCAACCCAGAGGGGACCCGACAGGCCCGAAGGAACAGAAGAAGGAGGTGGAGAGAGAGACAGAGGCACATCCACGAGATTAGTGCATGGATTCTTAGCACTCATCTGGGACGACCTGCGGAGCCTGTTCCTCTTCAGTTACCACCGCTTGAGAGACTTACTCTTGATTGCGGCGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCACTGAAGTATTGGTGGAATCTCCTGCAGTATTGGAGTCAGGAAATAAAGAATAG" @@ -1601,7 +1601,7 @@ "subtype_start": 8796, "subtype_end": 9417, "orientation": "forward", - "distance": 0.7959349593495859, + "distance": 0.5621267799724368, "protein": "MGNKLSRGLRAGWPAIRERMRRARPVREPEPAAAGVGAASRDLERHGALTSSNTAATNTDVACLEAQQEEEEVGFPVRPQVPLRPMTYKGALDISHFLKEKGGLDGLIYSKRRQDILDLWLYNTQGYFPDWQNYTPGPGVRFPLCFGWCFKLVPVDPDKVEEASVGENNCLLSPENLHGMEDEHREVLQWRFDSRLAFHHVARELHPEYYKDC", "aminoacids": "MGNKLSRGLRAGWPAIRERMRRARPVREPEPAAAGVGAASRDLERHGALTSSNTAATNTDVACLEAQQEEEEVGFPVRPQVPLRPMTYKGALDISHFLKEKGGLDGLIYSKRRQDILDLWLYNTQGYFPDWQNYTPGPGVRFPLCFGWCFKLVPVDPDKVEEASVGENNCLLSPENLHGMEDEHREVLQWRFDSRLAFHHVARELHPEYYKDC*H*", "nucleotides": "ATGGGTAACAAGTTGTCAAGAGGGCTCAGGGCTGGATGGCCTGCCATAAGGGAGAGAATGAGACGAGCTAGGCCAGTAAGAGAGCCAGAGCCAGCAGCAGCTGGGGTGGGAGCAGCATCTCGAGACCTGGAAAGACATGGAGCACTTACAAGTAGCAATACAGCAGCTACCAATACTGATGTTGCCTGCCTGGAAGCACAACAGGAGGAGGAAGAGGTGGGTTTTCCAGTCAGACCTCAGGTACCTTTAAGGCCAATGACTTACAAGGGAGCTCTAGATATTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGATGGGCTAATTTACTCCAAAAGAAGACAAGACATCCTTGATCTGTGGCTCTACAACACACAAGGCTACTTCCCTGACTGGCAGAACTACACACCAGGGCCAGGAGTCAGATTTCCACTGTGTTTTGGATGGTGCTTCAAGCTAGTACCAGTTGATCCAGATAAGGTAGAAGAGGCCAGTGTAGGAGAGAACAACTGCTTGTTAAGCCCCGAAAACCTGCATGGAATGGAGGACGAACACAGAGAAGTATTGCAGTGGAGGTTTGACAGCCGCCTAGCATTTCATCACGTGGCCCGAGAGCTGCATCCGGAGTATTACAAGGACTGCTGACACTGA" @@ -1615,7 +1615,7 @@ "subtype_start": 789, "subtype_end": 2292, "orientation": "forward", - "distance": 0.2571999999999999, + "distance": 0.2932056543547651, "protein": "MGARASILSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWTTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSANVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE", "aminoacids": "MGARASILSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWTTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSANVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE*R*", "nucleotides": "ATGGGTGCGAGAGCGTCAATATTAAGCGGGGGAAAATTAGATGCATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATTTAGTATGGGCAAGCAGGGAGCTAGAACGATTTGCCGTTAACCCTGGCCTGTTAGAAACATCAGAGGGATGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATTTAATGCAGTAGCAGTCCTCTATTGTGTACATCAAAGGATACAGGTACAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGTAGCAGCAGCTGACACTGACACAGGAAACAGCAGCCAAAATTACCCCATAGTGCAGAACCTCCAGGGGCAAATGGTACATCAGCCCCTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAAAAGGCCTTCAGCCCAGAAGTCATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGACGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCTTGGGATTAAATAAAATAGTAAGGATGTATAGCCCTACCAGTATTCTGGATATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAGAACTTTAAGAGCTGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATTCGAATCCAGATTGTAAGACTATTTTAAAAGCATTAGGACCAGCAGCAACACTAGAGGAAATGATGACAGCATGTCAAGGAGTGGGGGGACCAGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAAATTCAGCTAATGTAATGATGCAGAGAGGCAATTTTAGAAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACATCAAATGAAAGACTGTACAGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAG" @@ -1627,7 +1627,7 @@ "subtype_start": 2084, "subtype_end": 5096, "orientation": "forward", - "distance": 0.14755732801595212, + "distance": 0.1922427454342348, "protein": "FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSTGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED", "aminoacids": "FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSTGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*", "nucleotides": "TTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAGGGGGGCAATTTAAAGAAGCTTTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACCCATAGAAATCTGTGGACACAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGCTTGGTTGTACCTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTCAATAAGAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAATTCCCTTAGATAAAGAATTCAGGAAGTATACTGCATTTACCATACCTAGTACAAATAATGAGACACCAGGGATTAGGTATGAGTACAATGTGCTGCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGCAAAATCCAGATATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAACTGAGACAACATCTGTTAAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAGTGGACAGTACAGCCTATAATACTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTACGCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAGGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTTTAAGAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGCAATGGACAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTACAAAAGATAGCCACAGAAAGCATAGTAATATGGGGAAAAACTCCTAAATTTAGACTACCTATACAAAAAGAAACATGGGAGACATGGTGGGCAGAGTACTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAATTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACTAAATTAGGCAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAGGTTATCTCCCTAACGGACACAACAAATCAAAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATCAGAAGTAAACATAGTAACAGACTCACAATATACATTAGGAATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAATCAGATAATAGAGCAGTTAATAAAAAAGGAAAAAGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGACAAACTAGTCAGTACTGGAGTCAGGAGAGTACTATTTCTAGATGGAATAGATAAGGCCCAAGAAGACCATGAGAAATATCACAGTAATTGGAGAGCAATGGCTGGTGATTTTAATATACCCCCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCAAAAAGGAGAGGCCATGCATGGACAAGTAGATTGTAGTCCAGGAATATGGCAACTAGATTGTACACATCTAGAAGGGAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTCTCCTGAAACTAGCAGGGAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTAATGTGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCCATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTATAGTGCAGGGGAAAGAATAGTAGATATAATAGCAACAGACCTACAAACTAAAGAATTACAGAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGGAGAAAAGCAAAAATCATTAGGGATTATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG" @@ -1639,7 +1639,7 @@ "subtype_start": 5040, "subtype_end": 5619, "orientation": "forward", - "distance": 0.35416666666666674, + "distance": 0.36355859709153127, "protein": "MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH", "aminoacids": "MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH*", "nucleotides": "ATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATGTTTCAAAGAAAACTAAAGGATGGTTTTATAGACATCACTATGAAAGCACTCATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTGGTAGTAACAACATATTGGGGCCTGAATACAGGAGAAAGAGAATGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGAAAAAGGAAATATAGCACACAAGTTGACCCTAACCTAGCAGACCAACTAATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACATATAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGCTCTCTACAATACTTGGCACTAAAAGCATTAACAACACCAAAGAGAAGAAAGCCACCTTTACCTAGTGTTAGGAAACTGACAGAGGATAGATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAG" @@ -1651,7 +1651,7 @@ "subtype_start": 5558, "subtype_end": 5850, "orientation": "forward", - "distance": 0.4038461538461544, + "distance": 0.39444027047332864, "protein": "MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS", "aminoacids": "MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS*T", "nucleotides": "ATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAGAGCTTTTAGAGGAACTTAAGAATGAAGCGGTTAGACATTTTCCTAGGCCGTGGCTCCATGGCTTAGGACAACATATCTATGAAACTTATGGGGACACTTGGACAGGAGTGGAGGCCATAATAAGAACCCTGCAACAACTGCTGTTTATTCATTTCAGACTTGGGTGTCGACATAGCAGAATAGGCATTGTGCCACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACT" @@ -1663,7 +1663,7 @@ "subtype_start": 5830, "subtype_end": 6045, "orientation": "forward", - "distance": 0.29166666666666674, + "distance": 0.31992687385740404, "protein": "MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ", "aminoacids": "MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ", "nucleotides": "ATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCACCCAGGAAGTCAGCCTAAAACTCCTTGTACTAACTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAAAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAG" @@ -1675,7 +1675,7 @@ "subtype_start": 5969, "subtype_end": 6045, "orientation": "forward", - "distance": 0.5769230769230769, + "distance": 0.48200514138817474, "protein": "MAGRSGDSDEELLKAVRLIKILYQSS", "aminoacids": "MAGRSGDSDEELLKAVRLIKILYQSS", "nucleotides": "ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGT" @@ -1687,7 +1687,7 @@ "subtype_start": 6061, "subtype_end": 6310, "orientation": "forward", - "distance": 0.6865853658536587, + "distance": 0.5254806794847863, "protein": "MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAKDSGNESEGDQEELSALMEMGHHAPGDVDDL", "aminoacids": "MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAKDSGNESEGDQEELSALMEMGHHAPGDVDDL*", "nucleotides": "ATGCAACCTCTGCACATAGCAGCAATAGTAGGATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGACCATAGTGTTAATAGAATATAGGAAAATATTAAGACAAAAAAGGATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAAAAGACAGTGGCAATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAG" @@ -1699,7 +1699,7 @@ "subtype_start": 6224, "subtype_end": 8795, "orientation": "forward", - "distance": 0.49135514018691584, + "distance": 0.4421225244922844, "protein": "MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEAHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRNKMQKEYALFYKLDVVPIDNDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYENKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSETETFRPGGGDMKDNWRSELYKYKVEKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL", "aminoacids": "MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEAHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRNKMQKEYALFYKLDVVPIDNDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYENKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSETETFRPGGGDMKDNWRSELYKYKVEKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL*", "nucleotides": "ATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTGACAGTCTATTATGGGGTACCTGTATGGAAAGAAGCAAACACCACTCTATTTTGTGCATCGGATGCTAAAGCATATACCACAGAGGCACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGGATTGGAAAATGTGACAGAAAATTTTAACATGTGGAAAAATAACATGGTAGAACAGATGCATGAGGATGTAATCAATTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCACTAATCTGAATGTTACTAATACCAATAGCAGTAGTGAGGAGGGAAAGATGGCGGAAGAAATGAGAAACTGCTCTTTCAATATCACCACAAAAATAAGAAATAAGATGCAGAAGGAATATGCACTTTTTTATAAACTTGATGTAGTACCAATAGATAATGATAATACAAGTTATACATTGATAAATTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCTATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAGGATAAGAAGTTCAATGGATCAGGACCATGTAAAAATGTCAGCACAGTACAATGTACACATGGAATTAAGCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTTTAGCAGAAGAAGAGGTAGTAATTAGATCTGAAAATTTCACGAACAATGCTAAAACCATAATAGTACATCTGAAGGAACCTATACAAATTAATTGTACAAGACCCAACAACAATACAATGAAAAGTATCCCTCTAGGACCAGGAAGAGCATTCTATGCAACAGGAGCCATAATAGGAGATATAAGACAAGCACATTGTAACCTTAGTAGAAAAGCATGGAATAATACTTTAAAACAGGTAGTTGAAAAATTAAAAGAACAATATGAGAATAAAACAATAATCTTTAATCACTCCTCAGGAGGGGACCCAGAAATTATAATGCATACTTTTAATTGTGGAGGGGAATTTTTCTATTGTAATACAACACAGCTGTTTAATAGTACTTGGAATAGTACTTGGACTGGGAATGCTACCGAATTAGATGGAAACATCACACTCCCATGCAGAATAAAACAGATTATAAACAGGTGGCAAGAAGTAGGAAAAGCAATGTATGCCCCTCCCATTAGAGGAAAAATTAGATGTTCATCAAATATTACAGGGTTACTATTAGTAAGAGATGGTGGTAACACGAGCGAGACTGAGACCTTCAGACCTGGAGGAGGAGATATGAAGGACAATTGGAGGAGTGAATTATATAAATATAAAGTAGAAAAAATTGAGCCATTAGGAGTAGCACCCACCAGGGCAAAGAGAAGAGTGGTGCAAAGAGAAAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAAGCCAGGCTGTTATTGTCTGGTATAGTGCAACAGCAAAACAATTTGCTGAGAGCTATTGAGGCGCAACAACATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTACAGGATCAACAGCGCCTGGGAATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCCTGGAATGCTAGTTGGAGTAATAAATCTCTGAATCAGATTTGGGATAACATGACCTGGATGGAGTGGGAAAGAGAAATTAACAATTACACAGACACAATATACACCTTAATTGAAAAGGCGCAGAACCAGCAGGAAAAAAATGAACAAGAATTATTGGAATTGGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAAATGGCTGTGGTACATAAAATTATTCATAATGATAGTAGGAGGATTGATAGGTTTAAGAATAGTTTTTGCTGTACTTGCTATAGTAAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGCCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAGCTTATTCAATGTCACAGCCATCGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAAGAGCTTGTAGAGCTCTTCTCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCATTGTTATAA" @@ -1711,7 +1711,7 @@ "subtype_start": 8376, "subtype_end": 8469, "orientation": "forward", - "distance": 0.28666666666666596, + "distance": 0.3161764705882347, "protein": "RPTSQPRGDPTGPKESKKKVEKETETDQFD", "aminoacids": "RPTSQPRGDPTGPKESKKKVEKETETDQFD**", "nucleotides": "AGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGA" @@ -1723,7 +1723,7 @@ "subtype_start": 8377, "subtype_end": 8653, "orientation": "forward", - "distance": 0.39560439560439553, + "distance": 0.38952607660679506, "protein": "DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVPLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE", "aminoacids": "DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVPLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE*CY*", "nucleotides": "GACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGCCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAG" @@ -1735,7 +1735,7 @@ "subtype_start": 8796, "subtype_end": 9417, "orientation": "forward", - "distance": 0.6162601626016186, + "distance": 0.49848743916874616, "protein": "MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPMSLHGMEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC", "aminoacids": "MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPMSLHGMEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC*H*", "nucleotides": "ATGGGGGGCAAGTGGTCAAAAAGTAGTGGGGGTGGATGGCCTGCTGTAAGGGAAAGAATGAGACGAACTGAGCCAGCAGCAGAAGGGGTGGGAGCAGTATCTCGAGACCTGGAAAGACATGGAGCAGTCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGCGCCTGGCTGGAAGCACAAGAAGAGGACAGTGAAGTGGGTTTTCCAGTCAGACCTCAGGTGCCTTTAAGACCAATGACTTTCAAAGGAGCTCTCGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCCCAAAAAAGACAAGATATCCTTGACCTGTGGGTCTACAACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGACCAGATATCCACTGACCTTTGGGTGGTGTTTCAAGCTAGTACCAGTGGAGCCAGAAGAGGCCAATCAAGGAGAGAACAACTGCTTGTTACACCCTATGAGCCTGCATGGGATGGAGGACCCGGAAAAAGAAGTATTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCACATGGCCCGAGAGAAGCATCCGGAGTACTACAAAGACTGCTGACATTGA" @@ -1749,7 +1749,7 @@ "subtype_start": 789, "subtype_end": 2292, "orientation": "forward", - "distance": 0.1938000000000002, + "distance": 0.23814204964364727, "protein": "MGARASVLSGGELDKWEKIRLRPGGKKRYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPALQTGSEELKSLFNTVAVLYCVHQKIEIKDTKEALDKIEEEQNKSKKKTQQAAADTGHNSQVSQNYPIVQNMQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSNAVMMQKGNFRSQRKMVKCFNCGKEGHIARNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFPQSRTEPTAPPEESFSFGEKTTTPSQKQEPIDQELYPLSSLKSLFGNDP", "aminoacids": "MGARASVLSGGELDKWEKIRLRPGGKKRYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPALQTGSEELKSLFNTVAVLYCVHQKIEIKDTKEALDKIEEEQNKSKKKTQQAAADTGHNSQVSQNYPIVQNMQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSNAVMMQKGNFRSQRKMVKCFNCGKEGHIARNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFPQSRTEPTAPPEESFSFGEKTTTPSQKQEPIDQELYPLSSLKSLFGNDP*SQ*", "nucleotides": "ATGGGTGCGAGAGCGTCGGTATTAAGCGGGGGAGAATTAGACAAATGGGAGAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAGATATAAGTTAAAACATATAGTATGGGCAAGCAGGGAACTGGAACGATTCGCAGTTAATCCTGGCCTGTTAGAAACATCAGAAGGCTGTAGACAAATACTGGGACAGCTACAACCAGCCCTTCAGACAGGATCAGAGGAACTTAAATCATTATTTAATACAGTAGCAGTCCTCTATTGTGTGCATCAAAAGATAGAGATAAAAGACACCAAGGAAGCTTTAGACAAGATAGAGGAAGAACAAAACAAAAGTAAGAAAAAGACACAGCAAGCAGCAGCTGACACAGGACATAACAGCCAGGTCAGCCAAAATTACCCTATAGTGCAGAACATGCAGGGGCAAATGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTGAAAGTAGTAGAAGAGAAGGCATTTAGCCCAGAAGTAATACCCATGTTTTCAGCCTTATCAGAAGGAGCCACCCCACAAGATTTGAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACTATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCGATTGCACCAGGCCAGATGAGAGAGCCGAGGGGAAGTGACATAGCAGGAACCACCAGTACCCTTCAGGAGCAAATAGGATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTACAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGAATGTATAGTCCTACCAGCATTCTGGACATAAGACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGATCGGTTCTATAAAACTCTAAGAGCCGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAGAATGCAAACCCAGATTGTAAAACCATTTTAAAAGCATTGGGTCCAGCAGCTACACTAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCCGGCCATAAGGCAAGAGTTTTGGCGGAAGCAATGAGCCAAGTAACAAACTCAAATGCCGTGATGATGCAGAAAGGCAATTTTAGGAGCCAAAGAAAGATGGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGGAAAAGGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGATTGTACTGAGAGACAGGCAAATTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGAAGGCCAGGGAACTTTCCTCAAAGCAGGACAGAACCAACAGCCCCACCAGAGGAGAGCTTCAGTTTTGGGGAAAAGACAACAACTCCTTCTCAGAAGCAGGAGCCGATAGACCAGGAACTATACCCTCTGTCTTCCCTCAAATCACTCTTTGGCAACGACCCTTAGTCACAGTAA" @@ -1761,7 +1761,7 @@ "subtype_start": 2084, "subtype_end": 5096, "orientation": "forward", - "distance": 0.20219341974077754, + "distance": 0.24591953047316462, "protein": "FFRENLAFPQGKARELSSKQDRTNSPTRGELQFWGKDNNSFSEAGADRPGTIPSVFPQITLWQRPLVTVRIGGQLKEALLDTGADDTVLEDMNLPGRWKPKMIGGIGGFIKVKQYDQISVEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPRVKQWPLTEEKIKALTEICKEMEKEGKISRIGPENPYNTPIFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKVEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGAKALTEVVPLTEEAELELAENREILKEPVHGVYYDPTKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWESWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIIGAETFYVDGAANRETKSGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIQKEKVYLAWVPAHKGIGGNEQVDKLVSSGIRKVLFLDGIDKAQEDHEKYHSNWRAMASDFNLPPVIAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPNFTSNAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKQLKQIIGQVREQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKVKIIRDYGKQMAGDGCVASRQDED", "aminoacids": "FFRENLAFPQGKARELSSKQDRTNSPTRGELQFWGKDNNSFSEAGADRPGTIPSVFPQITLWQRPLVTVRIGGQLKEALLDTGADDTVLEDMNLPGRWKPKMIGGIGGFIKVKQYDQISVEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPRVKQWPLTEEKIKALTEICKEMEKEGKISRIGPENPYNTPIFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKVEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGAKALTEVVPLTEEAELELAENREILKEPVHGVYYDPTKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWESWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIIGAETFYVDGAANRETKSGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIQKEKVYLAWVPAHKGIGGNEQVDKLVSSGIRKVLFLDGIDKAQEDHEKYHSNWRAMASDFNLPPVIAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPNFTSNAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKQLKQIIGQVREQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKVKIIRDYGKQMAGDGCVASRQDED*", "nucleotides": "TTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGAAGGCCAGGGAACTTTCCTCAAAGCAGGACAGAACCAACAGCCCCACCAGAGGAGAGCTTCAGTTTTGGGGAAAAGACAACAACTCCTTCTCAGAAGCAGGAGCCGATAGACCAGGAACTATACCCTCTGTCTTCCCTCAAATCACTCTTTGGCAACGACCCTTAGTCACAGTAAGGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTGTTAGAAGACATGAATTTACCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAAACAGTATGATCAGATATCAGTAGAAATTTGTGGACATAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAATATAATTGGAAGAAATCTGTTGACTCAGATTGGTTGTACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAGAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAACAGAAATTTGTAAGGAAATGGAAAAGGAAGGGAAAATTTCAAGAATTGGGCCTGAAAATCCATACAATACTCCAATATTTGCAATAAAGAAAAAAGACAGTACTAAATGGAGAAAGTTAGTAGATTTTAGAGAACTTAATAAGAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACACCCCGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCCTAGATAAAGACTTCAGGAAATATACTGCATTTACCATACCTAGTACAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTACTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCTGACATAGTTATATATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAGTAGAGGAACTGAGACAACATCTGTTGAAGTGGGGGTTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTTCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATACAACTGCCAGAGAAAGACAGCTGGACTGTCAATGATATACAGAAATTAGTGGGAAAGTTGAATTGGGCAAGTCAGATTTATCCAGGGATTAAAGTAAGGCAGTTATGTAAACTACTTAGAGGAGCCAAGGCGCTAACAGAAGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATCCTAAAAGAACCAGTACATGGAGTGTATTATGACCCAACAAAAGACTTAATAGCAGAAATACAGAAGCAGGGGCAAGGTCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAACTTGAAAACAGGAAAATATGCAAGAACAAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAGCCACAGAAAGCATAGTAATATGGGGAAAGACCCCTAAATTTAGACTACCCATTCAAAAAGAAACATGGGAATCATGGTGGACAGAATATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAAAAAGAACCCATAATAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACAAAATCAGGAAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAAGTTATTTCCCTAACTGACACAACAAATCAGAAGACTGAGTTACAAGCAATTCATCTAGCTTTGCAGGATTCAGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAGGCACAACCAGATAAAAGCGAATCAGAGTTAGTCAATCAAATAATAGAGCAATTAATACAAAAGGAAAAGGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGGGGAAATGAACAAGTAGATAAATTAGTCAGTTCTGGAATCAGAAAGGTACTATTTTTGGATGGAATAGATAAAGCCCAAGAAGATCATGAAAAATATCACAGTAATTGGAGAGCAATGGCTAGTGACTTTAACCTACCACCTGTAATAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGAGAAGCTATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAATTAGATTGTACACATTTAGAAGGAAAAATTATCCTGGTAGCAGTTCATGTAGCTAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGACAGGAAACAGCATACTTTCTCTTAAAATTAGCAGGAAGATGGCCAGTAACAACAATACATACAGACAATGGCCCCAACTTCACCAGTAATGCAGTTAAGGCCGCCTGTTGGTGGGCAGGGGTCAAACAAGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTTGTAGAATCTATGAATAAACAATTAAAACAAATTATAGGGCAGGTAAGAGAGCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAATAGACATAATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAGGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTGGTAATACAAGATAATAGTGACATAAAAGTAGTACCAAGAAGAAAAGTAAAAATTATTAGGGATTATGGAAAACAGATGGCAGGTGATGGTTGTGTGGCAAGTAGACAGGATGAGGATTAA" @@ -1773,7 +1773,7 @@ "subtype_start": 5040, "subtype_end": 5619, "orientation": "forward", - "distance": 0.39687499999999987, + "distance": 0.3902888752304854, "protein": "MENRWQVMVVWQVDRMRINMWKSLVKYHIHNSGKARGWCYRHHYESRHPRISSEVHIPLGGEARLVVTTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPELADQLIHLYYFNCFSESAIRQAILGHRVSPRCEYQAGHNKVGSLQYLALIALIPPKRRKPPLPSVRKLTEDRWNEPQRTKGHRESHTMNGH", "aminoacids": "MENRWQVMVVWQVDRMRINMWKSLVKYHIHNSGKARGWCYRHHYESRHPRISSEVHIPLGGEARLVVTTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPELADQLIHLYYFNCFSESAIRQAILGHRVSPRCEYQAGHNKVGSLQYLALIALIPPKRRKPPLPSVRKLTEDRWNEPQRTKGHRESHTMNGH*", "nucleotides": "ATGGAAAACAGATGGCAGGTGATGGTTGTGTGGCAAGTAGACAGGATGAGGATTAACATGTGGAAAAGCTTAGTAAAATACCATATACATAATTCAGGGAAGGCTAGGGGATGGTGTTATAGACATCACTATGAAAGCAGACATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGAGGAGAGGCTAGACTAGTAGTGACAACATATTGGGGCCTGCATACAGGAGAAAGAGACTGGCATTTGGGTCAAGGAGTCTCCATAGAATGGAGGAAAAGGAGATATAGCACACAAGTAGACCCTGAACTAGCAGACCAACTAATTCATCTGTATTATTTTAATTGTTTTTCAGAATCTGCTATAAGACAAGCCATATTAGGACATAGAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAATAAGGTAGGATCTCTGCAGTACTTGGCACTAATAGCATTAATACCACCAAAAAGGAGAAAGCCACCTTTGCCTAGTGTGAGGAAACTGACAGAGGATAGATGGAACGAGCCCCAGAGGACCAAGGGCCACAGAGAGAGCCATACAATGAATGGACACTAG" @@ -1785,7 +1785,7 @@ "subtype_start": 5558, "subtype_end": 5850, "orientation": "forward", - "distance": 0.4807692307692313, + "distance": 0.43675751222921066, "protein": "MERAPEDQGPQREPYNEWTLELLEELKREAVRHFPRAWLHGLGQHIYETYGDTWAGVEALIRTLQQLVFIHFRIGCQHSRIGILTHRRARNGASRS", "aminoacids": "MERAPEDQGPQREPYNEWTLELLEELKREAVRHFPRAWLHGLGQHIYETYGDTWAGVEALIRTLQQLVFIHFRIGCQHSRIGILTHRRARNGASRS*T", "nucleotides": "ATGGAACGAGCCCCAGAGGACCAAGGGCCACAGAGAGAGCCATACAATGAATGGACACTAGAACTTTTAGAAGAGCTTAAAAGAGAAGCTGTTAGGCACTTTCCTAGGGCATGGCTTCACGGCCTAGGACAACATATCTATGAAACTTATGGAGATACTTGGGCAGGAGTGGAAGCTCTAATAAGAACTCTGCAACAACTGGTGTTTATTCATTTCAGAATTGGATGTCAGCACAGCAGGATAGGCATTCTTACCCATAGAAGGGCAAGAAATGGAGCCAGTAGATCCTAGACT" @@ -1797,7 +1797,7 @@ "subtype_start": 5830, "subtype_end": 6045, "orientation": "forward", - "distance": 0.5694444444444444, + "distance": 0.4787482484820177, "protein": "MEPVDPRLEPWKHPGSQPKTACTSCYCKRCCYHCPRCFLTKGLGISYGRKKRRQRRRTPQDNQNHQVSLSKQ", "aminoacids": "MEPVDPRLEPWKHPGSQPKTACTSCYCKRCCYHCPRCFLTKGLGISYGRKKRRQRRRTPQDNQNHQVSLSKQ*", "nucleotides": "ATGGAGCCAGTAGATCCTAGACTGGAGCCCTGGAAGCATCCAGGGAGTCAGCCTAAGACTGCTTGCACCAGTTGCTATTGTAAAAGGTGTTGCTATCATTGCCCGCGATGCTTCTTAACAAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAACTCCTCAGGATAACCAGAACCATCAAGTTTCTTTATCAAAACAGTGA" @@ -1809,7 +1809,7 @@ "subtype_start": 5969, "subtype_end": 6045, "orientation": "forward", - "distance": 0.7115384615384615, + "distance": 0.5343731946851531, "protein": "MAGRSGDSDEELLRITRTIKFLYQNSE", "aminoacids": "MAGRSGDSDEELLRITRTIKFLYQNSE", "nucleotides": "ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAACTCCTCAGGATAACCAGAACCATCAAGTTTCTTTATCAAAACAGTGAG" @@ -1821,7 +1821,7 @@ "subtype_start": 6061, "subtype_end": 6310, "orientation": "forward", - "distance": 0.7439024390243905, + "distance": 0.5454220314735337, "protein": "MQSLEILAIVALVVAFIIAIVVWSIVFIEYRKIRRQKRIDRILDRIRERAEDSGNESEGDQEELAALVEMGNHAHLGMGHHAPWEVNDL", "aminoacids": "MQSLEILAIVALVVAFIIAIVVWSIVFIEYRKIRRQKRIDRILDRIRERAEDSGNESEGDQEELAALVEMGNHAHLGMGHHAPWEVNDL*", "nucleotides": "ATGCAATCTTTAGAAATATTAGCAATAGTAGCATTAGTAGTAGCATTTATAATAGCAATAGTCGTTTGGTCTATAGTATTCATAGAATATAGGAAAATAAGAAGACAAAAGAGAATAGACAGGATACTTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGGGACCAAGAAGAATTGGCAGCCCTCGTGGAGATGGGGAACCATGCTCATTTGGGGATGGGCCACCATGCTCCTTGGGAGGTCAATGACCTGTAA" @@ -1833,7 +1833,7 @@ "subtype_start": 6224, "subtype_end": 8795, "orientation": "forward", - "distance": 1.2061915887850478, + "distance": 0.6604956436074259, "protein": "MHSFNCRGEFFYCNTTQLFNSTWNSTTGVNGTGANNTEVNIITLPCKIKQIVNMWQEVGKAMYAPPISGQISCSSNITGLLLLRDGGNSNDTDNTTEIFRPGGGDMRDNWRSELYKYKVVQIEPLGVAPTKARRRVVQREKRAVGIGALFLGFLGAAGSTMGAASITLTVQARHLLSGIVQQQNNLLRAIEAQQHMLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTNVPWNSSWSNKNLSYIWNNMTWMQWEKEIDNYTEVIYNLIEQSQNQQEKNEQELLELDKWASLWTWFDITKWLWYIKIFIMIVGGLIGLRIVFTVLSIVNRVRQGYSPLSFQTLLPAARGPDRPEGIGEEGGERDRDRSSHLAHGFLTIIWVDLRSLFLFSYHHLRDLLLIVARGVELLGRRGWEALKYWWNLLQYWSQELKNSAVSLLNATAIAVAEGTDRFIEVLQRIFRAIIHIPTRIRQGLERALL", "aminoacids": "MRVKGTKKNWQPSWRWGTMLIWGWATMLLGRSMTCNAEDSWVTVYYGVPVWKEATTTLFCASDAKAYDPEVHNVWATHACVPTDPNPQEVELNVTENFNAWKNNMVDQMHEDIISLWDQSLKPCVKLTPLCVTLNCTELKNSTTINNTSSIEEGEMKNCSFNATTAIRDKVQKQYALFYRLDVVQIKDDNTSYNTRYRLINCNSATITQACPKVSFEPIPIH*VQCTHGIRPVVSTQLLLNGSLAEGDVVIRSKNFSNSAQTIIVQLNETVEINCTRPNNNTRKSIHIGPGRAFYATGDIIGDIRKAHCNISRAKWNETLKKIADKLREQFKRETIVFNQSSGGDPEIVMHSFNCRGEFFYCNTTQLFNSTWNSTTGVNGTGANNTEVNIITLPCKIKQIVNMWQEVGKAMYAPPISGQISCSSNITGLLLLRDGGNSNDTDNTTEIFRPGGGDMRDNWRSELYKYKVVQIEPLGVAPTKARRRVVQREKRAVGIGALFLGFLGAAGSTMGAASITLTVQARHLLSGIVQQQNNLLRAIEAQQHMLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTNVPWNSSWSNKNLSYIWNNMTWMQWEKEIDNYTEVIYNLIEQSQNQQEKNEQELLELDKWASLWTWFDITKWLWYIKIFIMIVGGLIGLRIVFTVLSIVNRVRQGYSPLSFQTLLPAARGPDRPEGIGEEGGERDRDRSSHLAHGFLTIIWVDLRSLFLFSYHHLRDLLLIVARGVELLGRRGWEALKYWWNLLQYWSQELKNSAVSLLNATAIAVAEGTDRFIEVLQRIFRAIIHIPTRIRQGLERALL*", "nucleotides": "ATGAGAGTGAAGGGGACCAAGAAGAATTGGCAGCCCTCGTGGAGATGGGGAACCATGCTCATTTGGGGATGGGCCACCATGCTCCTTGGGAGGTCAATGACCTGTAATGCAGAAGACTCGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAAAGAAGCAACCACCACTCTATTTTGTGCATCAGATGCCAAAGCATATGACCCAGAGGTACACAATGTCTGGGCCACACATGCTTGTGTACCCACAGACCCCAACCCACAAGAAGTAGAATTAAATGTGACAGAAAATTTTAATGCATGGAAAAATAACATGGTAGATCAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAACTGCACTGAGTTGAAGAATAGCACTACTATAAACAATACCAGTAGTATAGAAGAAGGAGAAATGAAAAACTGTTCTTTTAATGCCACCACAGCAATAAGAGATAAGGTGCAAAAACAATATGCACTTTTTTATAGACTTGATGTAGTACAAATTAAGGATGATAATACCAGCTATAATACCAGATATAGGTTGATAAATTGTAACTCCGCAACCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTAGGTACAATGTACACATGGAATTAGGCCAGTAGTATCAACTCAACTGTTGTTAAATGGCAGTCTAGCAGAAGGAGATGTAGTAATTAGATCTAAAAATTTCTCTAACAGTGCTCAAACCATAATAGTACAATTAAACGAAACTGTAGAAATTAATTGTACAAGACCCAACAATAATACAAGAAAAAGTATACATATAGGACCAGGGAGAGCATTTTATGCAACAGGAGACATAATAGGAGATATAAGAAAAGCACATTGTAACATTAGTAGAGCAAAATGGAATGAGACTTTAAAAAAGATAGCTGATAAATTAAGGGAACAATTTAAAAGAGAGACAATAGTCTTTAACCAATCCTCAGGAGGGGACCCAGAGATTGTAATGCACAGTTTTAATTGTAGAGGGGAATTTTTCTACTGTAATACAACACAACTGTTTAATAGTACTTGGAATAGTACTACAGGAGTAAATGGTACAGGAGCAAATAATACAGAAGTAAATATTATCACACTCCCATGCAAGATAAAGCAAATTGTAAACATGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCATCAGTGGACAAATTAGTTGTTCATCAAATATTACAGGGCTACTACTACTAAGAGATGGTGGTAATAGCAATGACACGGATAACACGACTGAAATCTTCAGACCTGGAGGAGGAGATATGAGAGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTACAAATTGAACCATTAGGAGTAGCACCCACCAAGGCAAGGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTCTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCATCAATAACGCTGACGGTACAAGCCAGACACTTATTGTCTGGTATAGTGCAACAGCAGAACAATTTGCTGAGAGCTATTGAGGCGCAACAGCATATGTTGCAGCTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTAGAAAGATACCTTAAGGATCAACAGCTCCTGGGGATTTGGGGTTGCTCTGGAAAACTCATCTGCACCACTAATGTGCCTTGGAATAGTAGTTGGAGTAATAAAAATCTGAGTTACATTTGGAATAACATGACCTGGATGCAGTGGGAAAAAGAAATTGACAATTACACAGAGGTAATATACAACTTAATTGAACAATCGCAAAACCAGCAAGAAAAGAATGAACAAGAATTATTGGAATTGGATAAATGGGCAAGTTTGTGGACTTGGTTTGACATAACAAAGTGGCTGTGGTATATAAAAATATTTATAATGATAGTAGGAGGCTTAATAGGTTTAAGAATAGTTTTTACTGTACTTTCTATAGTGAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCTCCTCCCAGCCGCGAGGGGACCCGACAGGCCCGAAGGAATCGGAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCAGTCACTTAGCGCATGGATTCTTAACAATTATCTGGGTCGACCTGCGGAGCCTGTTCCTCTTCAGCTACCACCACTTGAGAGACTTACTCTTGATTGTAGCGAGGGGTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAGTATTGGTGGAATCTCCTGCAGTATTGGAGCCAGGAACTAAAGAATAGTGCTGTCAGCTTGCTCAACGCCACAGCCATAGCAGTAGCTGAGGGGACAGATAGGTTTATAGAAGTATTGCAAAGAATTTTTAGAGCTATTATCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCTTTGCTATAA" @@ -1845,7 +1845,7 @@ "subtype_start": 8376, "subtype_end": 8469, "orientation": "forward", - "distance": 0.4866666666666659, + "distance": 0.439759036144578, "protein": "RPSSQPRGDPTGPKESEKKVERETETDPVT", "aminoacids": "RPSSQPRGDPTGPKESEKKVERETETDPVT*", "nucleotides": "AGACCCTCCTCCCAGCCGCGAGGGGACCCGACAGGCCCGAAGGAATCGGAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCAGTCACTTAG" @@ -1857,7 +1857,7 @@ "subtype_start": 8377, "subtype_end": 8653, "orientation": "forward", - "distance": 0.46153846153846145, + "distance": 0.4267425320056898, "protein": "DPPPSREGTRQARRNRRRRWRERQRQIQSLSAWILNNYLGRPAEPVPLQLPPLERLTLDCSEGCGTSGTQGVGSPQVLVESPAVLEPGTKE", "aminoacids": "DPPPSREGTRQARRNRRRRWRERQRQIQSLSAWILNNYLGRPAEPVPLQLPPLERLTLDCSEGCGTSGTQGVGSPQVLVESPAVLEPGTKE*", "nucleotides": "GACCCTCCTCCCAGCCGCGAGGGGACCCGACAGGCCCGAAGGAATCGGAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCAGTCACTTAGCGCATGGATTCTTAACAATTATCTGGGTCGACCTGCGGAGCCTGTTCCTCTTCAGCTACCACCACTTGAGAGACTTACTCTTGATTGTAGCGAGGGGTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAGTATTGGTGGAATCTCCTGCAGTATTGGAGCCAGGAACTAAAGAATAG" @@ -1869,7 +1869,7 @@ "subtype_start": 8796, "subtype_end": 9417, "orientation": "forward", - "distance": 0.6943089430894234, + "distance": 0.5282692069776047, "protein": "MGGIFSKRNGGGWPAIRERMRRAQPAADGVGAASRDLERHGALTSNNTPANNADCAWLEAQEEGEEVGFPVRPQVPLRPMTYKGAVDLSHFLKEKGGLEGLIYSQQRQDILDLWVYNTQGYFPDWQNYTPGPGIRYPLTFGWCFKLVPMEPEDVEKATEGEDNILLHPVNQHGMDDPDKEVLVWKFDSRLAFRHVAREIHPEYYKNC", "aminoacids": "MGGIFSKRNGGGWPAIRERMRRAQPAADGVGAASRDLERHGALTSNNTPANNADCAWLEAQEEGEEVGFPVRPQVPLRPMTYKGAVDLSHFLKEKGGLEGLIYSQQRQDILDLWVYNTQGYFPDWQNYTPGPGIRYPLTFGWCFKLVPMEPEDVEKATEGEDNILLHPVNQHGMDDPDKEVLVWKFDSRLAFRHVAREIHPEYYKNC*QRAF*", "nucleotides": "ATGGGAGGCATATTCTCAAAACGTAATGGGGGTGGGTGGCCTGCAATAAGGGAAAGAATGAGACGAGCTCAGCCAGCAGCAGATGGGGTAGGAGCAGCATCTCGAGACCTGGAAAGACATGGAGCTCTCACAAGTAACAATACACCAGCTAACAATGCTGATTGTGCCTGGCTGGAAGCACAGGAAGAGGGGGAAGAAGTGGGTTTCCCAGTCAGACCTCAGGTACCTTTAAGACCAATGACATACAAGGGAGCTGTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGTTAATTTACTCCCAACAAAGACAAGATATCCTTGATCTGTGGGTCTACAACACACAGGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGATAAGATATCCACTGACCTTTGGATGGTGCTTCAAGCTAGTGCCAATGGAACCAGAGGATGTAGAAAAGGCCACTGAAGGAGAGGACAACATCTTGTTACACCCTGTGAACCAGCATGGGATGGACGACCCAGATAAAGAAGTGTTAGTGTGGAAGTTTGACAGCCGCCTAGCATTCCGTCACGTGGCCCGAGAGATACATCCGGAGTACTACAAGAACTGCTGACAGCGAGCTTTCTAA" @@ -1883,7 +1883,7 @@ "subtype_start": 234, "subtype_end": 1731, "orientation": "forward", - "distance": 0.3517171717171721, + "distance": 0.36195426195426217, "protein": "MGARASVLSGGELDKWEKIRLRPGGKKQYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPALQTGSEELKSLFNTVAVLYCVHQRIEIKDTKEALDKIEEEQNKSKKKTQQAAADPGNSNQVSQNYPIVQNMQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSASVMMQKGNFRSQRKMVKCFNCGKEGHIARNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFPQSRTEPTAPPEESFSFGEKTTTPSQKQEPIDQELYPMSSLKSLFGNDP", "aminoacids": "MGARASVLSGGELDKWEKIRLRPGGKKQYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPALQTGSEELKSLFNTVAVLYCVHQRIEIKDTKEALDKIEEEQNKSKKKTQQAAADPGNSNQVSQNYPIVQNMQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSASVMMQKGNFRSQRKMVKCFNCGKEGHIARNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFPQSRTEPTAPPEESFSFGEKTTTPSQKQEPIDQELYPMSSLKSLFGNDP*SQ*", "nucleotides": "ATGGGTGCGAGAGCGTCGGTATTAAGCGGGGGAGAATTAGACAAATGGGAGAAAATTCGGTTAAGGCCAGGGGGAAAGAAACAATATAAGTTAAAACATATAGTATGGGCAAGCAGGGAACTGGAACGATTCGCAGTTAATCCTGGCCTGTTAGAAACATCAGAAGGCTGTAGACAAATACTGGGACAGCTACAACCAGCCCTTCAGACAGGATCAGAGGAACTTAAATCATTATTTAATACAGTAGCAGTCCTCTATTGTGTGCATCAAAGGATAGAGATAAAAGACACCAAGGAAGCTTTAGACAAGATAGAGGAAGAACAAAACAAAAGTAAGAAAAAGACACAGCAAGCAGCAGCTGACCCAGGAAATAGCAACCAGGTCAGCCAAAATTACCCTATAGTGCAGAACATGCAGGGGCAAATGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTGAAAGTAGTAGAAGAGAAGGCTTTTAGCCCAGAAGTAATACCCATGTTTTCAGCCTTATCAGAAGGAGCCACCCCACAAGATTTGAACACGATGCTAAACACAGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACTATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCGATTGCACCAGGCCAGATGAGAGAACCGAGGGGAAGTGACATAGCAGGAACCACCAGTACCCTTCAGGAGCAAATAGGATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTACAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGAATGTATAGTCCTACCAGCATTCTGGACATAAGACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGATCGGTTCTATAAAACTCTAAGAGCCGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAGAATGCAAACCCAGATTGTAAGACCATTTTAAAAGCATTAGGTCCAGCAGCTACACTAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCCGGCCATAAGGCAAGAGTTTTGGCGGAAGCAATGAGCCAAGTAACAAACTCAGCTTCCGTGATGATGCAGAAAGGCAATTTTAGGAGCCAAAGAAAGATGGTTAAGTGTTTCAATTGTGGCAAAGAAGGACACATAGCCAGAAATTGCAGGGCCCCTAGGAAAAGGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGATTGTACTGAGAGACAGGCAAATTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGGAGGCCAGGGAACTTTCCTCAAAGCAGAACAGAACCAACAGCCCCACCAGAGGAGAGCTTCAGTTTTGGGGAAAAGACAACAACTCCTTCTCAGAAGCAGGAGCCGATAGACCAGGAACTATACCCTATGTCTTCCCTCAAATCACTCTTTGGCAACGACCCTTAGTCACAGTAA" @@ -1895,7 +1895,7 @@ "subtype_start": 1526, "subtype_end": 4535, "orientation": "forward", - "distance": 0.26447105788423153, + "distance": 0.2990160678822892, "protein": "FFRENLAFPQGEARELSSKQNRTNSPTRGELQFWGKDNNSFSEAGADRPGTIPYVFPQITLWQRPLVTVRIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVKQYDQISVEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPRVKQWPLTEEKIKALTEICKEMEKEGKISKIGPENPYNTPIFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTRILEPFRKQNPDMVIYQYMDDLYVGSDLEIGQHRTKVEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGAKALTEVVPLTEEAELELAENREILKEPVHGVYYDPTKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWESWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIIGAETFYVDGAANRETKSGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIQKEKVYLAWVPAHKGIGGNEQVDKLVSSGIRKVLFLDGIDKAQEDHEKYHSNWRAMASDFNIPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPNFTSNAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKQLKQIIGQVREQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDGCVASRQDED", "aminoacids": "FFRENLAFPQGEARELSSKQNRTNSPTRGELQFWGKDNNSFSEAGADRPGTIPYVFPQITLWQRPLVTVRIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVKQYDQISVEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPRVKQWPLTEEKIKALTEICKEMEKEGKISKIGPENPYNTPIFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTRILEPFRKQNPDMVIYQYMDDLYVGSDLEIGQHRTKVEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGAKALTEVVPLTEEAELELAENREILKEPVHGVYYDPTKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWESWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIIGAETFYVDGAANRETKSGKAGYVTDRGRQKVISLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIQKEKVYLAWVPAHKGIGGNEQVDKLVSSGIRKVLFLDGIDKAQEDHEKYHSNWRAMASDFNIPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVTTIHTDNGPNFTSNAVKAACWWAGVKQEFGIPYNPQSQGVVESMNKQLKQIIGQVREQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDGCVASRQDED*", "nucleotides": "TTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGGAGGCCAGGGAACTTTCCTCAAAGCAGAACAGAACCAACAGCCCCACCAGAGGAGAGCTTCAGTTTTGGGGAAAAGACAACAACTCCTTCTCAGAAGCAGGAGCCGATAGACCAGGAACTATACCCTATGTCTTCCCTCAAATCACTCTTTGGCAACGACCCTTAGTCACAGTAAGGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTGTTAGAAGAAATGAGTCTACCAGGAAGATGGAAGCCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAAACAGTATGATCAGATATCAGTAGAAATTTGTGGACATAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAATATAATTGGAAGAAATCTGTTGACTCAGATTGGTTGTACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAGAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAACAGAAATTTGTAAGGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAATATTTGCAATAAAGAAAAAAGACAGTACTAAATGGAGAAAGTTAGTAGATTTTAGAGAACTTAATAAGAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACACCCCGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCCTAGATAAAGACTTCAGGAAATATACTGCATTTACCATACCTAGTACAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTACTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAGAATCTTAGAGCCTTTTAGAAAACAAAATCCAGACATGGTTATATATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAGTAGAGGAACTGAGACAACATCTGTTGAAGTGGGGGTTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTTCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATACAACTGCCAGAGAAAGACAGCTGGACTGTCAATGATATACAGAAATTAGTGGGAAAGTTGAATTGGGCAAGTCAGATTTATCCAGGGATTAAAGTAAGGCAGTTATGTAAACTACTTAGAGGAGCCAAGGCGCTAACAGAAGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATCCTAAAAGAACCAGTGCATGGAGTGTATTATGACCCAACAAAAGACTTAATAGCAGAAATACAGAAGCAGGGGCAAGGTCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAACTTGAAAACAGGAAAATATGCAAGAACAAGGGGTGCTCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAGCCACAGAAAGCATAGTAATATGGGGAAAGACCCCTAAATTTAGACTACCCATTCAAAAAGAAACATGGGAATCATGGTGGACAGAATATTGGCAAGCCACTTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAAAAAGAACCCATAATAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACAAAATCAGGAAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAAGTTATCTCCCTAACTGACACAACAAATCAGAAGACTGAGTTACAAGCAATTCATCTAGCTTTGCAGGATTCAGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAGGCACAACCAGATAAAAGCGAATCAGAGTTAGTCAATCAAATAATAGAGCAATTAATACAAAAGGAAAAGGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGGGGAAATGAACAAGTAGATAAATTAGTCAGTTCTGGAATCAGAAAGGTACTATTTTTGGATGGAATAGATAAGGCCCAAGAAGATCATGAAAAATATCACAGTAATTGGAGAGCAATGGCTAGTGACTTTAACATACCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGAGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAATTAGATTGTACACATTTAGAAGGAAAAATTATCCTGGTAGCAGTTCATGTAGCTAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGACAGGAAACAGCATACTTTCTCTTAAAATTAGCAGGAAGATGGCCAGTAACAACAATACATACAGACAATGGCCCCAACTTCACCAGTAATGCAGTTAAGGCCGCCTGTTGGTGGGCAGGGGTCAAACAAGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTTGTAGAATCTATGAATAAACAATTAAAACAAATTATAGGACAGGTAAGAGAGCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAATAGACATAATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAACTTCTTTGGAAAGGTGAGGGGGCAGTAGTAATACAAGATAATAGTGACATAAAAGTAGTACCAAGAAGAAAAGCAAAAATTATTAGGGATTATGGAAAACAGATGGCAGGTGATGGTTGTGTGGCAAGTAGACAGGATGAGGATTAA" @@ -1907,7 +1907,7 @@ "subtype_start": 4479, "subtype_end": 5061, "orientation": "forward", - "distance": 0.5668393782383419, + "distance": 0.4776041211909543, "protein": "MENRWQVMVVWQVDRMRINMWKSLVKYHIHNSGKARGWCYRHHYESRHPRISSEVHIPLGGEARLVVTTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPDLADQLIHLYYFNCFSESAIRQAILGHRVSPRCEYQAGHNKVGSLQYLALIALIPPKRRKPPLPSVRKRTEDRWNEPQRTKGHRESHTMNGH", "aminoacids": "MENRWQVMVVWQVDRMRINMWKSLVKYHIHNSGKARGWCYRHHYESRHPRISSEVHIPLGGEARLVVTTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPDLADQLIHLYYFNCFSESAIRQAILGHRVSPRCEYQAGHNKVGSLQYLALIALIPPKRRKPPLPSVRKRTEDRWNEPQRTKGHRESHTMNGH*", "nucleotides": "ATGGAAAACAGATGGCAGGTGATGGTTGTGTGGCAAGTAGACAGGATGAGGATTAACATGTGGAAAAGTTTAGTAAAATACCATATACATAATTCAGGGAAGGCTAGGGGATGGTGTTATAGACATCACTATGAAAGCAGACATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGAGGAGAGGCTAGACTAGTAGTGACAACATATTGGGGCCTGCATACAGGAGAAAGAGACTGGCATTTGGGTCAAGGAGTCTCCATAGAATGGAGGAAAAGGAGATATAGCACACAAGTAGACCCTGACCTAGCAGACCAACTAATTCATCTGTATTATTTTAATTGTTTTTCAGAATCTGCTATAAGACAAGCCATATTAGGACATAGAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAATAAGGTAGGATCTCTGCAGTACTTGGCACTAATAGCATTAATACCACCAAAAAGGAGAAAGCCACCTTTGCCTAGTGTGAGGAAACGGACAGAGGATAGATGGAACGAGCCCCAGAGGACCAAGGGCCACAGAGAGAGCCATACAATGAATGGACACTAG" @@ -1919,7 +1919,7 @@ "subtype_start": 5000, "subtype_end": 5291, "orientation": "forward", - "distance": 0.46875, + "distance": 0.43053960964408733, "protein": "MERAPEDQGPQREPYNEWTLELLEELKREAVRHFPRAWLHGLGQHIYETYGDTWAGVEALIRILQQLVFIHFRIGCQHSRIGILTHRRARNGASRS", "aminoacids": "MERAPEDQGPQREPYNEWTLELLEELKREAVRHFPRAWLHGLGQHIYETYGDTWAGVEALIRILQQLVFIHFRIGCQHSRIGILTHRRARNGASRS*", "nucleotides": "ATGGAACGAGCCCCAGAGGACCAAGGGCCACAGAGAGAGCCATACAATGAATGGACACTAGAACTTTTAGAAGAGCTTAAAAGAGAAGCTGTTAGGCACTTTCCTAGGGCATGGCTTCACGGCCTGGGACAACATATCTATGAAACTTATGGAGATACTTGGGCAGGAGTGGAAGCTCTAATAAGAATTCTGCAACAACTGGTGTTTATTCATTTCAGAATTGGATGTCAGCACAGCAGGATAGGCATTCTTACCCATAGAAGAGCAAGAAATGGAGCCAGTAGATCCTAG" @@ -1931,7 +1931,7 @@ "subtype_start": 5271, "subtype_end": 5486, "orientation": "forward", - "distance": 0.5416666666666667, + "distance": 0.46628407460545196, "protein": "MEPVDPRLEPWKHPGSQPRTACTSCYCKKCCYHCPRCFLTKGLGISYGRKKRRQRRRTPQDNQNHQVSLSKQ", "aminoacids": "MEPVDPRLEPWKHPGSQPRTACTSCYCKKCCYHCPRCFLTKGLGISYGRKKRRQRRRTPQDNQNHQVSLSKQ*", "nucleotides": "ATGGAGCCAGTAGATCCTAGACTGGAGCCCTGGAAGCATCCAGGGAGTCAGCCTAGGACTGCGTGCACCAGTTGCTATTGTAAAAAGTGTTGCTATCATTGCCCGCGATGCTTCTTAACAAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAACTCCTCAAGATAACCAGAACCATCAAGTTTCTTTATCAAAACAGTGA" @@ -1943,7 +1943,7 @@ "subtype_start": 5410, "subtype_end": 5486, "orientation": "forward", - "distance": 0.75, + "distance": 0.5474452554744527, "protein": "MAGRSGDSDEELLKITRTIKFLYQNSE", "aminoacids": "MAGRSGDSDEELLKITRTIKFLYQNSE", "nucleotides": "ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAACTCCTCAAGATAACCAGAACCATCAAGTTTCTTTATCAAAACAGTGAG" @@ -1955,7 +1955,7 @@ "subtype_start": 5502, "subtype_end": 5748, "orientation": "forward", - "distance": 0.5308641975308646, + "distance": 0.4612744046341988, "protein": "MQSLEILAIVALVVAFIIAIVVWSIVLIEYRKIRRQKRIDRILDRIRERAEDSGNESEGDQEELAALVEMGNHAHLGMGHHAPWDVNDL", "aminoacids": "MQSLEILAIVALVVAFIIAIVVWSIVLIEYRKIRRQKRIDRILDRIRERAEDSGNESEGDQEELAALVEMGNHAHLGMGHHAPWDVNDL*", "nucleotides": "ATGCAATCCTTAGAAATATTAGCAATAGTAGCATTAGTAGTAGCATTTATAATAGCAATAGTTGTTTGGTCTATAGTACTCATAGAATATAGGAAAATAAGAAGACAAAAGAGAATAGACAGGATACTTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGGGACCAAGAAGAATTGGCAGCCCTCGTGGAGATGGGGAACCATGCTCATTTGGGGATGGGCCACCATGCTCCTTGGGATGTCAATGACCTGTAA" @@ -1967,7 +1967,7 @@ "subtype_start": 5665, "subtype_end": 8212, "orientation": "forward", - "distance": 0.5740566037735857, + "distance": 0.48076163387848647, "protein": "MRVKGTKKNWQPSWRWGTMLIWGWATMLLGMSMTCNAEDSWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVELNVTENFNAWKNNMVDQMHEDIISLWDQSLKPCVKLTPLCVTLNCTELKNSTGEMKNCSFNATTAIRDKVQKQYALFYRLDVVQIKDDNTSYNTRYRLINCNSSTITQACPKVSFEPIPIHYCAPAGFAILKCKDKNFNGTGLCENVSTVQCTHGIRPVVSTQLLLNGSLAEGDVVIRSKNFSNSAQTIIVQLNETVEINCTRPNNNTRKSIHIGPGRAFYATGDIIGDIRQAHCNISRAKWNETLKKIADKLREQFKRETIVFNQSSGGDPEIVMHSFNCRGEFFYCNTTQLFNSTWNSTTGVNGTGANNTEVNIITLPCKIKQIVNMWQEVGKAMYAPPISGQISCSSNITGLLLLRDGGNSNDTDNTTEIFRPGGGDMRDNWRSELYKYKVVQIEPLGVAPTKARRRVVQREKRAVGIGALFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQNNLLRAIEAQQHMLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTNVPWNSSWSNKNLSYIWNNMTWMQWEKEIDNYTEEIYNLIEQSQNQQEKNEQELLELDKWASLWTWFDITKWLWYIKIFIMIVGGLIGLRIVFTVLSIVNRVRQGYSPLSFQTLLPAARGPDRPEGIGEEGGERDRDRSSHLAHGFLTIIWVDLRSLFLFSYHHLRDLLLIVARGVELLGRRGWEALKYWWNLLQYWSQELKNSAVSLLNATAIAVAEGTDRFIEVLQRIFRAIIHIPTRIRQGLERALL", "aminoacids": "MRVKGTKKNWQPSWRWGTMLIWGWATMLLGMSMTCNAEDSWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVELNVTENFNAWKNNMVDQMHEDIISLWDQSLKPCVKLTPLCVTLNCTELKNSTGEMKNCSFNATTAIRDKVQKQYALFYRLDVVQIKDDNTSYNTRYRLINCNSSTITQACPKVSFEPIPIHYCAPAGFAILKCKDKNFNGTGLCENVSTVQCTHGIRPVVSTQLLLNGSLAEGDVVIRSKNFSNSAQTIIVQLNETVEINCTRPNNNTRKSIHIGPGRAFYATGDIIGDIRQAHCNISRAKWNETLKKIADKLREQFKRETIVFNQSSGGDPEIVMHSFNCRGEFFYCNTTQLFNSTWNSTTGVNGTGANNTEVNIITLPCKIKQIVNMWQEVGKAMYAPPISGQISCSSNITGLLLLRDGGNSNDTDNTTEIFRPGGGDMRDNWRSELYKYKVVQIEPLGVAPTKARRRVVQREKRAVGIGALFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQNNLLRAIEAQQHMLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTNVPWNSSWSNKNLSYIWNNMTWMQWEKEIDNYTEEIYNLIEQSQNQQEKNEQELLELDKWASLWTWFDITKWLWYIKIFIMIVGGLIGLRIVFTVLSIVNRVRQGYSPLSFQTLLPAARGPDRPEGIGEEGGERDRDRSSHLAHGFLTIIWVDLRSLFLFSYHHLRDLLLIVARGVELLGRRGWEALKYWWNLLQYWSQELKNSAVSLLNATAIAVAEGTDRFIEVLQRIFRAIIHIPTRIRQGLERALL*NGRHILKT*", "nucleotides": "ATGAGAGTGAAGGGGACCAAGAAGAATTGGCAGCCCTCGTGGAGATGGGGAACCATGCTCATTTGGGGATGGGCCACCATGCTCCTTGGGATGTCAATGACCTGTAATGCAGAAGACTCGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAAAGAAGCAACCACCACTCTATTTTGTGCATCAGATGCCAAAGCATATGACACAGAGGTACACAATGTCTGGGCCACACATGCTTGTGTACCCACAGACCCCAACCCACAAGAAGTAGAATTAAATGTGACAGAAAATTTTAATGCATGGAAAAATAACATGGTAGATCAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAACTGCACTGAGTTGAAGAATAGCACTGGAGAAATGAAAAACTGTTCTTTTAATGCCACCACAGCAATAAGAGATAAGGTGCAAAAACAATATGCACTTTTTTATAGACTTGATGTAGTACAAATTAAGGATGATAATACCAGCTATAATACCAGATATAGGTTGATAAATTGTAACTCCTCAACCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAGGATAAGAATTTCAATGGAACAGGACTATGTGAAAATGTTAGCACAGTACAATGTACACATGGAATTAGACCAGTAGTATCAACTCAACTGTTGTTAAATGGCAGTCTAGCAGAAGGAGATGTAGTAATTAGATCTAAAAATTTCTCTAACAGTGCTCAAACCATAATAGTACAATTAAACGAAACTGTAGAAATTAATTGTACAAGACCCAACAATAATACAAGAAAAAGTATACATATAGGACCAGGGAGAGCATTTTATGCAACAGGAGACATAATAGGAGATATAAGACAAGCACATTGTAACATTAGTAGAGCAAAATGGAATGAGACTTTAAAAAAGATAGCTGATAAATTAAGGGAACAATTTAAAAGGGAGACAATAGTCTTTAACCAATCCTCAGGAGGGGACCCAGAGATTGTAATGCACAGTTTTAATTGTAGAGGGGAATTTTTCTACTGTAATACAACACAACTGTTTAATAGTACTTGGAATAGTACTACAGGAGTAAATGGTACAGGAGCAAATAATACAGAAGTAAATATTATCACACTCCCATGCAAGATAAAGCAAATTGTAAACATGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCATCAGTGGACAAATTAGTTGTTCATCAAATATTACAGGGCTACTACTACTAAGAGATGGTGGTAATAGCAATGACACGGATAACACGACTGAAATCTTCAGACCTGGAGGAGGAGATATGAGAGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTACAAATTGAACCATTAGGAGTAGCACCCACCAAGGCAAGGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTCTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCATCAATAACGCTGACGGTACAAGCCAGACAATTATTGTCTGGTATAGTGCAACAGCAGAACAATTTGCTGAGAGCTATTGAGGCGCAACAGCATATGTTGCAGCTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTAGAAAGATACCTTAAGGATCAACAGCTCCTGGGGATTTGGGGTTGCTCTGGAAAACTCATCTGCACCACTAATGTGCCTTGGAATAGTAGTTGGAGTAATAAAAATCTGAGTTATATCTGGAATAACATGACCTGGATGCAGTGGGAAAAAGAAATTGACAATTACACAGAGGAAATATACAACTTAATTGAACAATCGCAAAACCAGCAAGAAAAGAATGAACAAGAATTATTGGAATTGGATAAATGGGCAAGTTTGTGGACTTGGTTTGACATAACAAAGTGGCTGTGGTATATAAAAATATTTATAATGATAGTAGGAGGCTTAATAGGTTTAAGAATAGTTTTTACTGTACTTTCTATAGTGAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCTCCTCCCAGCCGCGAGGGGACCCGACAGGCCCGAAGGAATCGGAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCAGTCACTTAGCGCATGGATTCTTAACAATTATCTGGGTCGACCTGCGGAGCCTGTTCCTCTTCAGCTACCACCACTTGAGAGACTTACTCTTGATTGTAGCGAGGGGAGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAGTATTGGTGGAATCTCCTGCAGTATTGGAGCCAGGAACTAAAGAATAGTGCTGTCAGCTTGCTCAACGCCACAGCCATAGCAGTAGCTGAGGGGACAGATAGGTTTATAGAAGTATTGCAAAGAATTTTTAGAGCTATTATCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCTTTGCTATAAAATGGGAGGCATATTCTCAAAACGTAA" @@ -1979,7 +1979,7 @@ "subtype_start": 7793, "subtype_end": 7886, "orientation": "forward", - "distance": 0.6935483870967742, + "distance": 0.5279960707269156, "protein": "RPSSQPRGDPTGPKESEKKVERETETDPVT", "aminoacids": "RPSSQPRGDPTGPKESEKKVERETETDPVT*R", "nucleotides": "AGACCCTCCTCCCAGCCGCGAGGGGACCCGACAGGCCCGAAGGAATCGGAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCAGTCACTTAGCGC" @@ -1991,7 +1991,7 @@ "subtype_start": 7794, "subtype_end": 8070, "orientation": "forward", - "distance": 0.5274725274725274, + "distance": 0.45968205324650446, "protein": "DPPPSREGTRQARRNRRRRWRERQRQIQSLSAWILNNYLGRPAEPVPLQLPPLERLTLDCSEGSGTSGTQGVGSPQVLVESPAVLEPGTKE", "aminoacids": "DPPPSREGTRQARRNRRRRWRERQRQIQSLSAWILNNYLGRPAEPVPLQLPPLERLTLDCSEGSGTSGTQGVGSPQVLVESPAVLEPGTKE*", "nucleotides": "GACCCTCCTCCCAGCCGCGAGGGGACCCGACAGGCCCGAAGGAATCGGAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCAGTCACTTAGCGCATGGATTCTTAACAATTATCTGGGTCGACCTGCGGAGCCTGTTCCTCTTCAGCTACCACCACTTGAGAGACTTACTCTTGATTGTAGCGAGGGGAGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAGTATTGGTGGAATCTCCTGCAGTATTGGAGCCAGGAACTAAAGAATAG" @@ -2003,7 +2003,7 @@ "subtype_start": 8213, "subtype_end": 8834, "orientation": "forward", - "distance": 0.6674757281553398, + "distance": 0.518437523565342, "protein": "MGGIFSKRNGGGWPAIRERMRRAQPAADGVGAASRDLERHGALTSNNTPANNADCAWLEAQEEGEEVGFPVRPQVPLRPMTYKGAVDLSHFLKEKGGLEGLIYSQQRQDILDLWVYNTQGYFPDWQNYTPGPGIRYPLTFGWCFKLVPMEPEDVEKATEGEDNILLHPVNQHGMDDSEREVLVWKFDSRLAFRHVAREIHPEYYKNC", "aminoacids": "MGGIFSKRNGGGWPAIRERMRRAQPAADGVGAASRDLERHGALTSNNTPANNADCAWLEAQEEGEEVGFPVRPQVPLRPMTYKGAVDLSHFLKEKGGLEGLIYSQQRQDILDLWVYNTQGYFPDWQNYTPGPGIRYPLTFGWCFKLVPMEPEDVEKATEGEDNILLHPVNQHGMDDSEREVLVWKFDSRLAFRHVAREIHPEYYKNC*QRAFYKGLSARDFPGEA*", "nucleotides": "ATGGGAGGCATATTCTCAAAACGTAATGGGGGTGGGTGGCCTGCAATAAGGGAAAGAATGAGACGAGCTCAGCCAGCAGCAGATGGGGTAGGAGCAGCATCTCGAGACCTGGAAAGACATGGAGCTCTCACAAGTAACAATACACCAGCTAACAATGCTGATTGTGCCTGGCTGGAAGCACAGGAAGAGGGGGAAGAAGTGGGTTTCCCAGTCAGACCTCAGGTACCTTTAAGACCAATGACATACAAGGGAGCTGTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGTTAATTTACTCCCAACAAAGACAAGATATCCTTGATCTGTGGGTCTACAACACACAGGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGATAAGATATCCACTGACCTTTGGATGGTGCTTCAAGCTAGTGCCAATGGAACCAGAGGATGTAGAAAAGGCCACTGAAGGAGAGGACAACATCTTGTTACACCCTGTGAACCAGCATGGGATGGACGACTCAGAGAGAGAAGTGTTAGTGTGGAAGTTTGACAGCCGCCTAGCATTCCGTCACGTGGCCCGAGAGATACATCCGGAGTACTACAAGAACTGCTGACAGCGAGCTTTCTACAAGGGACTTTCCGCTAGGGACTTTCCAGGGGAGGCGTGA" @@ -2017,7 +2017,7 @@ "subtype_start": 789, "subtype_end": 2292, "orientation": "forward", - "distance": 0.21479999999999988, + "distance": 0.25730713943459504, "protein": "MGARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNTIAVLYCVHQRIDVKDTKEALNKIEEEQNKSKKKAQQAAADTGNSSQSSQVSQNYPIVQNHQGQMVYQALSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHNPPIPVGEIYKRWIIMGLNKIVRMYSPISILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPSHKARVLAEAMSQATGGATNIMMQKGNFRNQGKPIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCSERQANFLGKIWPSHKGRPGNFLQNRPEPTAPPEESFRFGEETTAPPQKQEPTDKELYPFSSLKSLFGNDPSSQ", "aminoacids": "MGARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNTIAVLYCVHQRIDVKDTKEALNKIEEEQNKSKKKAQQAAADTGNSSQSSQVSQNYPIVQNHQGQMVYQALSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHNPPIPVGEIYKRWIIMGLNKIVRMYSPISILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPSHKARVLAEAMSQATGGATNIMMQKGNFRNQGKPIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCSERQANFLGKIWPSHKGRPGNFLQNRPEPTAPPEESFRFGEETTAPPQKQEPTDKELYPFSSLKSLFGNDPSSQ*R*", "nucleotides": "ATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGCGAATTAGATAGATGGGAGAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAAGTTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCGGTTAATCCTGGCCTGTTAGAAACATCAGAGGGCTGTAGGCAAATACTGGGACAGCTACAACCGTCCCTTCAAACAGGATCAGAAGAACTTAAATCATTATTTAATACAATAGCAGTCCTTTATTGCGTACATCAAAGGATAGATGTAAAAGACACCAAGGAAGCTCTAAATAAGATAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGCAGCAGCTGACACAGGAAACAGCAGTCAGAGCAGTCAAGTCAGCCAAAATTACCCTATAGTGCAGAACCATCAGGGGCAAATGGTATATCAGGCTCTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAGAAGGCTTTCAGCCCCGAGGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAGGCAGCCATGCAAATGTTAAAAGAGACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTACATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGGACTACTAGTACCCTTCAGGAACAAATAGGATGGATGACACATAATCCACCTATCCCAGTAGGAGAAATTTATAAAAGATGGATAATCATGGGGTTAAATAAAATAGTAAGAATGTATAGCCCTATCAGCATTCTGGACATAAGACAAGGACCAAAAGAACCTTTTAGAGATTATGTAGACCGGTTCTATAAAACTCTAAGAGCCGAGCAAGCTTCACAAGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAACCCAGATTGTAAGACCATTCTAAAAGCATTAGGACCAGCAGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGGGGACCCAGCCACAAAGCAAGAGTCTTGGCTGAAGCAATGAGCCAAGCAACAGGTGGTGCAACTAACATAATGATGCAGAAAGGCAATTTTAGGAACCAAGGAAAACCTATTAAGTGTTTCAATTGTGGCAAAGAAGGGCACCTAGCTAGAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGACTGCTCTGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGAAGGCCAGGGAATTTCCTCCAGAACAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAACAGCTCCCCCTCAGAAGCAGGAGCCGACAGACAAGGAACTGTATCCCTTCTCTTCCCTCAAATCACTCTTTGGCAACGACCCCTCGTCACAGTAAAGATAG" @@ -2029,7 +2029,7 @@ "subtype_start": 2084, "subtype_end": 5096, "orientation": "forward", - "distance": 0.17248255234297116, + "distance": 0.21764839091160715, "protein": "FFRENLAFPQGKAREFPPEQTRANSPTRRELQVWGRDNSSPSEAGADRQGTVSLLFPQITLWQRPLVTVKIGGQLKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTKIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDESFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIEQHRAKVENLREHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTEVITLTEEAELELAENREILKEPVHGVYYDPSKDLVAEIQKQGQGQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKIATESIVVWGKIPKFRLPIQKETWETWWMEYWQATWIPEWEFVSTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKKGKAGYVTDRGRQKVIPLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKEKVYLTWVPAHKGIGGNEQVDKLVSAGIRKILFLDGIDKAQEDHEKYHSNWKAMASDFNIPPVVAKEIIASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKIIHTDNGSNFTSTTVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGEYCAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSEIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED", "aminoacids": "FFRENLAFPQGKAREFPPEQTRANSPTRRELQVWGRDNSSPSEAGADRQGTVSLLFPQITLWQRPLVTVKIGGQLKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTKIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDESFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIEQHRAKVENLREHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTEVITLTEEAELELAENREILKEPVHGVYYDPSKDLVAEIQKQGQGQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKIATESIVVWGKIPKFRLPIQKETWETWWMEYWQATWIPEWEFVSTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKKGKAGYVTDRGRQKVIPLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKEKVYLTWVPAHKGIGGNEQVDKLVSAGIRKILFLDGIDKAQEDHEKYHSNWKAMASDFNIPPVVAKEIIASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKIIHTDNGSNFTSTTVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGEYCAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSEIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*", "nucleotides": "TTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGAAGGCCAGGGAATTTCCTCCAGAACAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAACAGCTCCCCCTCAGAAGCAGGAGCCGACAGACAAGGAACTGTATCCCTTCTCTTCCCTCAAATCACTCTTTGGCAACGACCCCTCGTCACAGTAAAGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAAATACCCATAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTAAGATTGGTTGCACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAACCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCCGTATTTGCCATAAAGAAAAAGGATAGTACTAAATGGAGAAAGTTAGTAGATTTCAGAGAGCTTAATAAAAGAACTCAAGACTTTTGGGAGGTTCAATTAGGAATACCACATCCCGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTAGATGTGGGTGATGCATATTTCTCAGTTCCTTTAGATGAAAGCTTCAGAAAGTATACTGCATTTACCATACCTAGTACTAACAATGAGACACCCGGGATTAGGTATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTTCAAAGTAGCATGACGAAAATCTTAGAACCTTTTAGAAAACAAAATCCAGACATAGTTATCTACCAATACATGGATGATTTATACGTAGGATCTGACTTAGAAATAGAGCAGCATAGAGCAAAAGTAGAGAACCTGAGAGAGCATCTGTTGAGGTGGGGATTTACCACACCAGACAAAAAGCATCAGAAAGAACCTCCATTTCTTTGGATGGGCTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTGAATTGGGCAAGTCAGATTTATGCAGGGATTAAAGTAAAGCAATTATGTAAACTCCTTAGGGGAGCTAAGGCACTAACAGAAGTGATAACACTAACAGAAGAAGCAGAGCTAGAATTGGCAGAAAACAGAGAGATTCTAAAAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAGTAGCAGAAATACAGAAGCAGGGGCAAGGTCAATGGACCTATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAGTATGCAAGAACAAGGGGTGCCCACACTAATGATGTAAAACAGTTAACAGAAGCAGTTCAAAAAATAGCCACAGAGAGCATAGTAGTATGGGGAAAGATTCCTAAATTTAGATTACCCATACAGAAAGAAACATGGGAAACATGGTGGATGGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAGTACCCCTCCCTTAGTAAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAGACTAAAAAAGGAAAAGCAGGATATGTTACTGACAGAGGAAGGCAAAAAGTTATCCCCTTAACTGACACAACAAATCAGAAGACTGAGTTACAAGCAATTCATCTAGCTTTGCAGGATTCAGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGACAAGAGTGAATCAGAGTTAGTCAATCAAATAATAGAGCAGTTAATAAAAAAGGAGAAGGTCTACCTGACATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTGCAGGAATCAGGAAAATACTATTTTTGGATGGAATAGATAAGGCCCAGGAAGATCATGAGAAATATCATAGTAATTGGAAAGCAATGGCTAGTGATTTTAACATACCACCTGTGGTAGCAAAAGAGATAATAGCCAGCTGTGATAAATGTCAGCTAAAAGGGGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAACTAGATTGTACACATTTAGAAGGAAAAATTATCCTGGTAGCAGTCCATGTAGCCAGTGGGTACATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTATCTTAAAATTAGCAGGAAGATGGCCAGTAAAAATAATACATACAGATAATGGTAGCAATTTCACCAGCACTACAGTCAAGGCCGCCTGCTGGTGGGCAGGTGTTAAGCAGGAGTTTGGAATTCCCTACAATCCCCAAAGTCAAGGAGTAGTGGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGAGTACTGTGCAGGGGAAAGAATAATAGACATAATAGCAACAGACATACAAACTAAAGAACTACAAAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAGGGACCAGCAAAGCTGCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGAAATCAAAGTAGTACCAAGAAGAAAAGCAAAGATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG" @@ -2041,7 +2041,7 @@ "subtype_start": 5040, "subtype_end": 5619, "orientation": "forward", - "distance": 0.34375, + "distance": 0.3566796368352788, "protein": "MENRWQVMIVWQVDRMRIRTWKSLVKHHMYISKKAKGWVYRHHYESTHPRISSEVHIPLGDAKLVITTYWGLHTGERDWHLGQGVSIEWRKKRYNTQVDPGLADQLIHMYYFDCFSESAIRQAILGHRVSPSCEYQAGHNKVGSLQYLALAVLVAPKKIKPPLPSVARLTEDRWNKPRKIKGHRESHTMNGH", "aminoacids": "MENRWQVMIVWQVDRMRIRTWKSLVKHHMYISKKAKGWVYRHHYESTHPRISSEVHIPLGDAKLVITTYWGLHTGERDWHLGQGVSIEWRKKRYNTQVDPGLADQLIHMYYFDCFSESAIRQAILGHRVSPSCEYQAGHNKVGSLQYLALAVLVAPKKIKPPLPSVARLTEDRWNKPRKIKGHRESHTMNGH*NF*", "nucleotides": "ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAAAAGTCTAGTAAAACACCATATGTATATTTCAAAGAAAGCTAAGGGATGGGTTTACAGACACCACTATGAAAGCACTCATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAAATTGGTAATAACAACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCATTTGGGCCAGGGAGTCTCCATAGAATGGAGGAAAAAGAGATATAACACACAAGTAGACCCTGGCCTAGCAGACCAACTAATTCATATGTACTATTTTGATTGTTTTTCAGAATCTGCTATAAGACAAGCCATATTAGGACATAGAGTTAGTCCTAGTTGTGAATATCAAGCAGGACATAACAAGGTAGGATCTCTGCAATACCTGGCACTAGCAGTATTAGTAGCACCAAAAAAGATAAAGCCACCTTTGCCTAGTGTCGCGAGACTGACAGAGGATAGATGGAACAAGCCCCGGAAGATCAAGGGCCACAGAGAGAGCCATACAATGAATGGGCACTAGAACTTTTAG" @@ -2053,7 +2053,7 @@ "subtype_start": 5558, "subtype_end": 5850, "orientation": "forward", - "distance": 0.46153846153846234, + "distance": 0.42674253200569023, "protein": "MEQAPEDQGPQREPYNEWALELLEELKREAVRHFPREWLHSLGQHIYETYGDTWAGVGAIIRILQQLLFIHFRIGCHHSRIGILRRTRNGARRS", "aminoacids": "MEQAPEDQGPQREPYNEWALELLEELKREAVRHFPREWLHSLGQHIYETYGDTWAGVGAIIRILQQLLFIHFRIGCHHSRIGILRRTRNGARRS*T", "nucleotides": "ATGGAACAAGCCCCGGAAGATCAAGGGCCACAGAGAGAGCCATACAATGAATGGGCACTAGAACTTTTAGAGGAGCTTAAGAGGGAAGCTGTTAGACATTTTCCTAGGGAATGGCTCCATAGCTTAGGACAACATATCTATGAAACTTATGGGGACACTTGGGCAGGAGTAGGAGCCATAATAAGAATACTGCAACAATTACTGTTTATTCATTTCAGAATTGGGTGTCACCATAGCAGGATAGGCATACTGAGGAGAACAAGAAATGGAGCCCGTAGATCCTAGACT" @@ -2065,7 +2065,7 @@ "subtype_start": 5830, "subtype_end": 6045, "orientation": "forward", - "distance": 0.6222222222222225, + "distance": 0.5008944543828265, "protein": "MEPVDPRLEPWKHPGSQPRTPCNNCYCKKCCFHCQVCFTKKGLGISYGRKKRRQRRGPPRDSQIHQVPLPKQ", "aminoacids": "MEPVDPRLEPWKHPGSQPRTPCNNCYCKKCCFHCQVCFTKKGLGISYGRKKRRQRRGPPRDSQIHQVPLPKQ*", "nucleotides": "ATGGAGCCCGTAGATCCTAGACTGGAACCCTGGAAGCATCCAGGAAGTCAGCCTAGGACTCCTTGTAACAATTGCTATTGTAAAAAGTGCTGCTTTCATTGCCAAGTTTGCTTCACAAAAAAGGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGCGACAGAGACGAGGACCTCCTCGAGACAGTCAGATTCATCAAGTTCCTCTACCAAAACAGTAA" @@ -2077,7 +2077,7 @@ "subtype_start": 5969, "subtype_end": 6045, "orientation": "forward", - "distance": 0.8653846153846154, + "distance": 0.5825996892801657, "protein": "MAGRSGDRDEDLLETVRFIKFLYQNSK", "aminoacids": "MAGRSGDRDEDLLETVRFIKFLYQNSK", "nucleotides": "ATGGCAGGAAGAAGCGGCGACAGAGACGAGGACCTCCTCGAGACAGTCAGATTCATCAAGTTCCTCTACCAAAACAGTAAG" @@ -2089,7 +2089,7 @@ "subtype_start": 6061, "subtype_end": 6310, "orientation": "forward", - "distance": 0.7963414634146342, + "distance": 0.5622524539349062, "protein": "MQPLEISAIVALVVVAIIAIVVWTIVLLEYRKILRQKKIDRLINRISERAEDSGNESDGDQEELSALMEMGRLAPWNVDDL", "aminoacids": "MQPLEISAIVALVVVAIIAIVVWTIVLLEYRKILRQKKIDRLINRISERAEDSGNESDGDQEELSALMEMGRLAPWNVDDL*", "nucleotides": "ATGCAACCTTTAGAGATATCAGCAATAGTAGCATTAGTAGTAGTAGCAATAATAGCAATAGTTGTGTGGACCATAGTACTCTTAGAGTATAGGAAAATATTAAGGCAAAAGAAAATAGACAGATTAATTAATAGAATAAGTGAAAGAGCAGAAGACAGTGGCAATGAGAGTGACGGGGATCAAGAAGAATTGTCAGCTCTTATGGAGATGGGGCGCCTTGCTCCTTGGAATGTTGATGATCTGTAG" @@ -2101,7 +2101,7 @@ "subtype_start": 6224, "subtype_end": 8795, "orientation": "forward", - "distance": 0.5660046728971964, + "distance": 0.47723646106262685, "protein": "MRVTGIKKNCQLLWRWGALLLGMLMICSATNMWVTVYYGVPVWKDATTTLFCASDAKAYDTEIHNVWATHACVPTDPDPQEVVLENVTENYNMGKNNMVEQMHEDIISLWDQSLKPCVLLTPFCVTLNCTDANITSTNNSRDKKEGESTLEETKGEIKNCSFNMTSSMSDKSQKQRALFYKLDVVQIDETNNNSYRLISCNTSVVTQACPKVSFDPIPIHYCAPAGFAILKCNNKKFNGTGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENFTNNAKTIIVQLKTPVQINCTRPNNNTRKRISMGPGRVIYATGQIIGDIRKAHCNISRAEWNTTLKQIVTQLRKQWNRTIIFNSSSGGDPEIVMHSFNCRGEFFYCNTTKLFNSTWPRNSTWNNTEGSNDTEIITLPCRIKQIVNRWQEVGKAMYAPPIQGQISCSSNITGLLLVRDGGINTSESNETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQREKRAVGMLGAMFLGLLGAAGSTMGAASVTLTVQTRLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARLLAVERYLQDQQLLGIWGCSGKLICTTTVPWNTSWSNRSYEDIWNNMTWMEWEKEIDNYTGLIYTLIEKSQNQQEINEQELLSLDKWASLWNWFNITNWLWYIKIFIMIVGGLIGLRIVFAVLSIVNRVRQGYSPLSLQTPRPAPRGPDRPEEIEEGGGERDRDRSVRLVTGFFALFWDDLRSLCLFSYHHLRDLILIVVRVVEILGRRGWEALKYWWNLLQYWSQEIKNSAISLLNATAIAVAEGTDRIIGVVQRTWRAFIHIPRRIRQGFERALL", "aminoacids": "MRVTGIKKNCQLLWRWGALLLGMLMICSATNMWVTVYYGVPVWKDATTTLFCASDAKAYDTEIHNVWATHACVPTDPDPQEVVLENVTENYNMGKNNMVEQMHEDIISLWDQSLKPCVLLTPFCVTLNCTDANITSTNNSRDKKEGESTLEETKGEIKNCSFNMTSSMSDKSQKQRALFYKLDVVQIDETNNNSYRLISCNTSVVTQACPKVSFDPIPIHYCAPAGFAILKCNNKKFNGTGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENFTNNAKTIIVQLKTPVQINCTRPNNNTRKRISMGPGRVIYATGQIIGDIRKAHCNISRAEWNTTLKQIVTQLRKQWNRTIIFNSSSGGDPEIVMHSFNCRGEFFYCNTTKLFNSTWPRNSTWNNTEGSNDTEIITLPCRIKQIVNRWQEVGKAMYAPPIQGQISCSSNITGLLLVRDGGINTSESNETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQREKRAVGMLGAMFLGLLGAAGSTMGAASVTLTVQTRLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARLLAVERYLQDQQLLGIWGCSGKLICTTTVPWNTSWSNRSYEDIWNNMTWMEWEKEIDNYTGLIYTLIEKSQNQQEINEQELLSLDKWASLWNWFNITNWLWYIKIFIMIVGGLIGLRIVFAVLSIVNRVRQGYSPLSLQTPRPAPRGPDRPEEIEEGGGERDRDRSVRLVTGFFALFWDDLRSLCLFSYHHLRDLILIVVRVVEILGRRGWEALKYWWNLLQYWSQEIKNSAISLLNATAIAVAEGTDRIIGVVQRTWRAFIHIPRRIRQGFERALL*", "nucleotides": "ATGAGAGTGACGGGGATCAAGAAGAATTGTCAGCTCTTATGGAGATGGGGCGCCTTGCTCCTTGGAATGTTGATGATCTGTAGTGCTACAAACATGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAAAGATGCAACCACCACTCTATTCTGTGCATCAGATGCTAAAGCATATGATACAGAGATACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCGACCCACAAGAAGTAGTACTGGAAAATGTGACAGAAAATTATAATATGGGAAAAAATAACATGGTGGAACAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGCCTAAAGCCATGTGTACTCTTAACCCCATTCTGTGTCACTTTAAATTGCACTGATGCTAACATCACCAGCACTAATAATAGTAGAGATAAGAAGGAAGGAGAAAGTACATTGGAGGAGACGAAAGGAGAAATAAAAAACTGCTCTTTCAATATGACTTCAAGCATGAGCGATAAGTCTCAGAAACAACGTGCACTTTTTTATAAGCTTGATGTGGTACAAATAGATGAGACTAATAATAATAGTTATAGGTTGATAAGTTGTAACACCTCAGTCGTCACACAGGCTTGTCCAAAGGTATCCTTTGATCCAATCCCTATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAATAATAAGAAATTCAATGGAACAGGACCATGTAAAAATGTCAGCACAGTACAATGTACACATGGAATTAAACCTGTAGTGTCAACCCAACTGCTGTTAAATGGTAGTCTAGCAGAAGAAGAAGTAATGATTAGATCTGAAAATTTCACGAACAATGCTAAAACCATAATAGTGCAGCTGAAGACACCTGTACAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGGATAAGTATGGGACCAGGGAGAGTAATTTATGCAACAGGACAAATAATAGGAGATATAAGAAAAGCACATTGCAACATTAGTAGAGCAGAATGGAATACAACTTTAAAGCAGATAGTTACACAATTAAGAAAGCAGTGGAATAGAACCATAATCTTTAACTCATCCTCAGGAGGGGACCCAGAAATTGTGATGCACAGTTTTAATTGTAGAGGGGAATTTTTCTACTGTAATACAACAAAACTATTTAATAGTACTTGGCCACGTAATAGTACTTGGAATAATACTGAAGGGTCAAATGACACTGAAATAATCACACTCCCGTGCAGAATAAAACAAATTGTAAACAGGTGGCAGGAAGTAGGCAAAGCAATGTATGCCCCTCCCATCCAAGGACAAATTAGTTGTTCATCAAATATTACAGGGCTGCTACTAGTTAGAGATGGTGGAATTAACACCAGTGAGAGCAACGAGACCTTCAGACCTGGAGGAGGAGATATGAGGGACAATTGGAGAAGTGAATTATATAAATATAAGGTAGTAAAAATTGAACCATTAGGAGTAGCACCCACCAAGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATGCTGGGAGCTATGTTCCTTGGGCTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGTTGACGGTACAGACCAGACTATTATTGTCTGGTATAGTGCAACAGCAGAACAATCTGCTGAGGGCTATTGAGGCGCAGCAGCATCTGTTGCAACTCACAGTCTGGGGCATCAAACAGCTCCAGGCAAGACTCCTAGCTGTGGAAAGATACCTACAGGATCAACAGCTCCTAGGGATTTGGGGTTGCTCTGGAAAACTCATCTGCACCACTACTGTGCCTTGGAACACTAGTTGGAGTAATAGATCTTATGAAGATATTTGGAACAACATGACCTGGATGGAGTGGGAAAAAGAAATTGACAATTACACAGGCTTAATATACACCTTAATTGAAAAATCGCAGAACCAGCAGGAAATAAATGAACAAGAACTATTGTCATTGGATAAGTGGGCAAGCCTGTGGAATTGGTTTAATATAACAAATTGGCTGTGGTATATAAAAATATTCATAATGATAGTAGGAGGCTTGATAGGTTTAAGAATAGTTTTTGCTGTACTTTCTATAGTGAATAGAGTTAGGCAGGGATACTCACCATTGTCATTGCAGACCCCCCGCCCAGCCCCAAGGGGACCCGACAGGCCCGAAGAAATCGAAGAAGGAGGTGGAGAAAGAGACAGAGACAGATCAGTGCGATTAGTGACTGGATTCTTCGCACTTTTCTGGGACGATCTACGAAGCCTGTGCCTCTTCAGCTACCACCACTTGAGAGACTTAATCTTGATTGTAGTGAGGGTTGTGGAAATTCTGGGACGCAGGGGGTGGGAAGCCCTCAAATATTGGTGGAATCTCCTGCAGTACTGGAGTCAGGAAATAAAGAATAGTGCTATCAGCTTGCTCAACGCCACAGCTATAGCAGTAGCTGAGGGGACAGATAGAATCATAGGAGTAGTACAAAGAACTTGGAGAGCTTTTATCCACATACCTAGGAGAATAAGACAGGGCTTTGAAAGGGCTTTGCTATAA" @@ -2113,7 +2113,7 @@ "subtype_start": 8376, "subtype_end": 8469, "orientation": "forward", - "distance": 0.9733333333333327, + "distance": 0.610878661087866, "protein": "RPPAQPQGDPTGPKKSKKEVEKETETDQCD", "aminoacids": "RPPAQPQGDPTGPKKSKKEVEKETETDQCD**", "nucleotides": "AGACCCCCCGCCCAGCCCCAAGGGGACCCGACAGGCCCGAAGAAATCGAAGAAGGAGGTGGAGAAAGAGACAGAGACAGATCAGTGCGATTAGTGA" @@ -2125,7 +2125,7 @@ "subtype_start": 8377, "subtype_end": 8653, "orientation": "forward", - "distance": 0.5494505494505495, + "distance": 0.46983649689907914, "protein": "DPPPSPKGTRQARRNRRRRWRKRQRQISAISDWILRTFLGRSTKPVPLQLPPLERLNLDCSEGCGNSGTQGVGSPQILVESPAVLESGNKE", "aminoacids": "DPPPSPKGTRQARRNRRRRWRKRQRQISAISDWILRTFLGRSTKPVPLQLPPLERLNLDCSEGCGNSGTQGVGSPQILVESPAVLESGNKE*", "nucleotides": "GACCCCCCGCCCAGCCCCAAGGGGACCCGACAGGCCCGAAGAAATCGAAGAAGGAGGTGGAGAAAGAGACAGAGACAGATCAGTGCGATTAGTGACTGGATTCTTCGCACTTTTCTGGGACGATCTACGAAGCCTGTGCCTCTTCAGCTACCACCACTTGAGAGACTTAATCTTGATTGTAGTGAGGGTTGTGGAAATTCTGGGACGCAGGGGGTGGGAAGCCCTCAAATATTGGTGGAATCTCCTGCAGTACTGGAGTCAGGAAATAAAGAATAG" @@ -2137,7 +2137,7 @@ "subtype_start": 8796, "subtype_end": 9417, "orientation": "forward", - "distance": 0.4593495934959331, + "distance": 0.4255799939740875, "protein": "MGGKWSKKSGGGWPAVREKMKRTEPAAEGVGAASRDLDKYGAITSSNTAQTNPDCAWLEAQEEEEVGFPVRPQVPLRPMTYKAAVDMSHFLKEKGGLEGLIHSQKRQDILDLWIYHTQGYFPDWQNYTPGPGVRYPLTFGGCFK", "aminoacids": "MGGKWSKKSGGGWPAVREKMKRTEPAAEGVGAASRDLDKYGAITSSNTAQTNPDCAWLEAQEEEEVGFPVRPQVPLRPMTYKAAVDMSHFLKEKGGLEGLIHSQKRQDILDLWIYHTQGYFPDWQNYTPGPGVRYPLTFGGCFK*CVPVCCVTLVTRDPSDHFSQRGKSLAVAPEQGPESESRTRGDLSTQDSAC*", "nucleotides": "ATGGGTGGAAAATGGTCAAAAAAGAGTGGGGGTGGATGGCCTGCTGTAAGGGAAAAAATGAAGCGAACTGAGCCAGCAGCAGAGGGGGTGGGAGCAGCATCTCGAGACCTGGACAAATATGGAGCAATCACAAGTAGCAATACAGCACAGACCAATCCTGATTGTGCCTGGCTAGAAGCACAAGAAGAGGAAGAGGTAGGCTTTCCAGTCAGACCCCAGGTACCTTTGAGACCAATGACTTACAAGGCAGCTGTGGATATGAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCACTCCCAAAAGAGACAAGATATCCTTGATCTGTGGATCTATCACACACAAGGCTACTTCCCTGATTGGCAAAATTACACACCAGGGCCAGGGGTCAGATATCCACTGACCTTTGGAGGGTGCTTCAAGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGGTAACTAGAGATCCCTCAGACCATTTTAGTCAGCGTGGAAAATCTCTAGCAGTGGCGCCCGAACAGGGACCTGAAAGCGAAAGTAGAACCAGAGGAGATCTCTCGACGCAGGACTCGGCTTGCTGA" @@ -2151,7 +2151,7 @@ "subtype_start": 789, "subtype_end": 2292, "orientation": "forward", - "distance": 1.871000000000001, + "distance": 0.7511039743075072, "protein": "MTKTLLVQNANPDCKTILKALGPAATLEEMMTACQKVRRPGHKAKVLAEAMSQATGAANIMMQRGNFKNQRKPVKCFNCGKEKHIAKNCKAPKKKGC", "aminoacids": "MLHISSCFLPVLGLSGWTRSEPGSSLAN*GTHCLSLNKACLECFK*CVPVCCVTLVTRDPSGSNLVQPERPSSSGARTGT*KRK*NQRRSLDAGLGLLKRARQEAKGGDW*VRHF*LAEARRRKIGARASVLSRGELDR*EKIQLRPRRKKKYRLKHIV*ASKELERFAVNPGLLETSGGCKQILEQLQPSLQTRSEELRSLYNTVATLYYVHQKIDVKDTKEALDKVEEEQNKSKKKAQQAAADTRNRGQTSQNFPIVQNLQGQIVHQAISPRTLNA*VKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVSRHQAAMQMLKKVINEEAAE*DRLHPVHARPIAPGQIREPKRSDIARTTSTLQEQIR*MTHNPPIPVRKIYKR*IILGLNKIVKMYSPTSILDIKQRPKEPFRDYVDQFYKTLRAKQATQKVKN*MTKTLLVQNANPDCKTILKALGPAATLEEMMTACQKVRRPGHKAKVLAEAMSQATGAANIMMQRGNFKNQRKPVKCFNCGKEKHIAKNCKAPKKKGC*KYRKERHQMKNCTKRQANFLKKIWPSHKGRPENFPQSRPEIPQSRPEPTAPPAPPEKSFKFEEATTPSQKQETIDKELYPLTSLRSLFGNDPSSQ*", "nucleotides": "ATGCTGCATATAAGCAGCTGCTTTCTGCCTGTACTGGGTCTCTCTGGTTGGACCAGATCTGAGCCTGGGAGCTCTCTGGCTAACTAGGGAACCCACTGCTTAAGCCTCAATAAAGCTTGCCTTGAGTGTTTCAAGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGGTAACTAGAGATCCCTCAGGCTCAAATCTGGTCCAACCAGAGAGACCCAGTAGCAGTGGCGCCCGAACAGGGACCTGAAAGCGAAAGTAGAACCAGAGAAGATCTCTCGACGCAGGACTCGGCTTGCTGAAGCGCGCACGGCAAGAGGCGAAAGGCGGCGACTGGTGAGTACGCCATTTTTGACTAGCAGAGGCTAGAAGGAGAAAGATAGGTGCGAGAGCGTCAGTATTGAGCAGAGGAGAATTAGATAGATAGGAGAAAATTCAGTTAAGGCCAAGGAGAAAGAAAAAATATAGATTAAAACATATAGTATAGGCAAGCAAGGAACTAGAACGATTCGCAGTTAATCCTGGCCTGTTAGAAACATCAGGAGGCTGTAAACAGATATTAGAACAGCTACAACCATCCCTTCAGACAAGATCAGAAGAACTTAGATCATTATATAATACAGTAGCCACCCTCTATTATGTACATCAAAAGATAGATGTAAAAGACACCAAAGAAGCGTTAGACAAAGTAGAAGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGCGGCAGCTGACACAAGAAACAGAGGCCAGACCAGTCAAAATTTCCCTATAGTGCAGAACCTACAAGGGCAAATAGTACATCAGGCCATATCACCTAGAACTTTAAATGCATAAGTAAAAGTAGTAGAAGAAAAAGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACTATGCTAAACACAGTAAGTAGACACCAAGCAGCTATGCAAATGTTAAAAAAGGTCATCAATGAAGAAGCTGCAGAATAAGATAGATTACATCCAGTGCATGCAAGGCCTATTGCACCAGGCCAGATAAGAGAACCAAAAAGAAGTGACATAGCAAGAACTACTAGTACCCTTCAGGAACAAATAAGATAGATGACACATAATCCACCTATCCCAGTAAGAAAGATTTATAAAAGATAAATAATTCTAGGACTAAATAAAATAGTAAAAATGTATAGCCCTACCAGCATTTTAGACATAAAGCAAAGGCCAAAAGAACCCTTTAGAGACTATGTAGACCAGTTCTATAAAACTTTAAGAGCCAAGCAAGCTACACAGAAAGTAAAAAATTAGATGACAAAAACCTTGTTAGTCCAGAATGCAAATCCAGATTGTAAAACTATTTTAAAAGCATTAGGACCAGCAGCTACACTAGAAGAAATGATGACAGCATGTCAAAAAGTAAGAAGACCCGGCCATAAAGCAAAAGTTTTAGCTGAAGCAATGAGCCAAGCAACAGGTGCAGCCAACATAATGATGCAGAGAGGCAATTTTAAGAACCAAAGAAAGCCTGTTAAATGTTTCAATTGTGGCAAAGAAAAGCACATAGCCAAAAATTGCAAGGCCCCTAAGAAAAAAGGCTGTTAGAAATATAGAAAAGAAAGACACCAAATGAAAAATTGCACTAAGAGACAGGCTAATTTTTTAAAGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGAGAACTTTCCTCAAAGCCGACCAGAAATTCCTCAGAGCAGACCAGAGCCAACAGCCCCACCAGCCCCTCCAGAAAAGAGCTTCAAGTTTGAAGAAGCAACAACTCCCTCTCAGAAGCAGGAGACAATAGACAAGGAGCTGTATCCTCTAACTTCCCTCAGATCACTCTTTGGCAACGACCCATCGTCACAATAA" @@ -2163,7 +2163,7 @@ "subtype_start": 2084, "subtype_end": 5096, "orientation": "forward", - "distance": 2.003988035892324, + "distance": 0.7637184348711559, "protein": "ASQIYAKIKVKQLCKLLKRTKALTEVVPLTEEAELELAENRKILKDPVHRAYYDPAKDLIAELQKQREGQWTYQIYQKPFKNLKTEKYARTKGAHTNDVKQLTEAVQKISTESIVI", "aminoacids": "FFKENLAFPQRKARELSSKPTRNSSEQTRANSPTSPSRKELQV*RSNNSLSEAGDNRQGAVSSNFPQITLWQRPIVTIKIREQLKKALLNTGADDTVLEDIDLPRK*KPKMIRRIRSFIKVRQYEQVPIEISRHKAISTVLVGPTPVNIIRRNLLTQLSCTLNFPISPIETVPVKLKPRMDGPKVKQ*PLTEEKIKALVEICTEIEKEKKISKIRPENPYNTPVFAIKKKDGTK*KKLVDFRELNKKTQDF*EIQLSIPHPAKLKKKKSVTVLDVGDAYFSVPLDKDFKKYTAFTIPSINNETPKIRYQYNVLPQR*KRSPAIFQSSMTKILEPFRKTNPDIVIYQYIDDLYVRSDLEIRQHRTKVKELRQHLMR*RFTTPDKKHQKEPPFL*MRYELHPDKWTVQPIVLPEKES*TVNDIQKLVRKLN*ASQIYAKIKVKQLCKLLKRTKALTEVVPLTEEAELELAENRKILKDPVHRAYYDPAKDLIAELQKQREGQWTYQIYQKPFKNLKTEKYARTKGAHTNDVKQLTEAVQKISTESIVI*RRTPKFRLPIQKET*ET*WTDYWQAT*IPK*EFVNTPPLVKL*YQLEKEPIIRAETFYVDKAANKDNKSRKARYVTDRRRQKVVTINDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALKIIQAQPDKSESELVSQIIEQLIKKKKVYLA*VPAHKRIKRNEQVNKLVSARIKKVLFLDKIEKAQEDHKKYHSN*RTMASNFNLPPIVAKEIVASCDKCQLKKEAMHRQVDCSPGIWQLDCTHLEEKIILVAVHVASRYIEAEVIPAETRQETAYFILKLARRWPVKTIHTDNGRNFTSNTVKAAC**AKIKQEFSIPYNPQSQEVVKSINNELKKIIRQVKDQAKHLKTAVQMAVFIHNFKRKGGIEGYSAEERIVDIIATEIQTKELQKQITKIQNFQVYYKDSRDPL*KGPAKLLWKGEKAVVIQDNSDIKVVPRRKAKIIKDYKKQMASDDCVASRQDED*NMEKFSKIPYVYFKESQEIGL*", "nucleotides": "TTTTTTAAAGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGAGAACTTTCCTCAAAGCCGACCAGAAATTCCTCAGAGCAGACCAGAGCCAACAGCCCCACCAGCCCCTCCAGAAAAGAGCTTCAAGTTTGAAGAAGCAACAACTCCCTCTCAGAAGCAGGAGACAATAGACAAGGAGCTGTATCCTCTAACTTCCCTCAGATCACTCTTTGGCAACGACCCATCGTCACAATAAAGATAAGAGAGCAACTAAAGAAAGCTTTATTAAATACAGGAGCAGATGATACAGTATTAGAAGACATAGATTTGCCAAGAAAATAGAAACCAAAAATGATAAGAAGAATTAGAAGTTTTATCAAAGTAAGACAATATGAACAGGTACCCATAGAAATTAGCAGACACAAAGCTATAAGTACAGTGTTAGTAGGACCTACACCTGTCAACATAATTAGAAGAAATCTGTTGACTCAGCTTAGTTGCACTCTAAATTTTCCCATCAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAAGAATGGACGGCCCAAAAGTTAAACAATAGCCATTAACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATAGAAAAAGAAAAGAAAATTTCAAAAATTAGGCCTGAAAATCCATACAATACTCCAGTGTTTGCCATAAAGAAAAAAGATGGCACTAAATAGAAAAAATTAGTAGATTTCAGAGAACTTAATAAGAAAACTCAAGATTTCTAAGAAATTCAATTAAGTATACCACATCCTGCAAAGCTAAAAAAGAAAAAATCAGTCACAGTACTAGATGTAGGTGATGCATATTTTTCAGTTCCCTTAGATAAAGACTTCAAGAAATATACTGCATTTACCATACCTAGTATAAACAATGAGACACCAAAGATTAGATATCAGTATAATGTGCTTCCACAAAGATAGAAAAGATCACCAGCAATATTCCAAAGTAGCATGACAAAGATCCTAGAGCCTTTTAGAAAGACAAATCCAGACATAGTTATCTATCAATACATAGATGATTTGTATGTAAGATCTGACTTAGAAATAAGGCAACATAGAACAAAAGTAAAGGAACTGAGGCAACATCTAATGAGGTAAAGATTTACCACACCAGACAAAAAGCACCAGAAAGAACCCCCATTCCTTTAGATGAGGTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTACTGCCAGAAAAAGAAAGTTAGACTGTCAATGACATACAGAAGTTAGTAAGAAAATTGAATTAGGCAAGTCAGATTTATGCAAAGATTAAAGTGAAGCAATTATGTAAGCTCCTTAAAAGAACCAAAGCATTAACAGAAGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGAAAGATTCTAAAAGATCCAGTACATAGAGCATATTATGACCCAGCAAAGGACTTAATAGCAGAACTACAGAAGCAAAGAGAAGGTCAGTGGACATATCAAATTTATCAAAAGCCATTTAAAAATCTAAAAACAGAGAAATATGCAAGAACGAAAGGTGCCCATACTAATGATGTAAAGCAATTAACAGAAGCAGTGCAAAAAATATCCACAGAAAGTATAGTAATATAAAGAAGGACTCCTAAATTTAGATTACCCATACAAAAAGAAACATAAGAAACATAGTGGACAGATTATTGGCAAGCCACCTAGATCCCTAAGTAAGAGTTTGTCAACACCCCTCCCTTAGTGAAATTATAGTACCAGTTAGAAAAAGAACCCATAATAAGAGCAGAAACCTTCTATGTAGATAAGGCAGCTAATAAAGATAATAAATCAAGAAAAGCAAGATATGTTACTGACAGAAGAAGACAAAAAGTTGTCACCATAAATGACACAACAAATCAGAAAACTGAATTACAAGCCATTCATCTAGCCTTGCAAGATTCAGGGCTAGAAGTAAACATAGTAACAGACTCACAGTATGCATTAAAGATCATTCAAGCACAACCAGATAAAAGTGAATCAGAGTTAGTCAGTCAAATAATAGAACAGTTAATAAAAAAGAAAAAAGTCTACCTGGCATAAGTGCCAGCCCACAAAAGAATTAAAAGAAATGAACAGGTAAATAAACTAGTCAGTGCTAGAATCAAGAAAGTACTATTTTTAGATAAAATAGAAAAAGCCCAAGAAGACCATAAAAAATATCACAGTAATTAAAGAACAATGGCTAGTAATTTTAACCTACCACCTATAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCTAAAAAAAGAAGCTATGCATAGGCAAGTAGACTGTAGTCCAGGTATATGGCAGCTAGATTGTACACATTTAGAAGAAAAAATTATCCTAGTAGCAGTTCATGTAGCCAGTAGATATATAGAAGCAGAAGTGATTCCAGCAGAGACAAGGCAAGAAACAGCATACTTTATTTTAAAACTAGCAAGAAGATGGCCAGTAAAAACAATACATACAGACAATGGCCGCAATTTCACCAGTAATACAGTGAAGGCCGCCTGTTAGTAGGCAAAAATCAAGCAAGAATTTAGTATTCCCTACAATCCCCAAAGTCAAGAAGTAGTAAAATCTATAAATAATGAATTAAAGAAAATTATAAGACAAGTAAAAGATCAGGCTAAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGAAGGATACAGTGCAGAGGAAAGAATAGTAGACATAATAGCAACAGAAATACAGACTAAAGAATTACAAAAACAAATTACAAAAATTCAAAATTTTCAGGTTTATTACAAGGACAGCAGAGATCCACTTTAGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAAAGGCAGTAGTAATACAAGATAACAGTGACATAAAAGTAGTGCCAAGAAGAAAAGCAAAAATCATTAAGGATTATAAAAAACAGATGGCAAGTGATGATTGTGTGGCAAGTAGACAGGATGAAGATTAGAACATGGAAAAGTTTAGTAAAATACCATATGTATATTTCAAAGAAAGCCAAGAAATAGGCTTATAG" @@ -2175,7 +2175,7 @@ "subtype_start": 5040, "subtype_end": 5619, "orientation": "forward", - "distance": 1.928125, + "distance": 0.7566838361540349, "protein": "MIVWQVDRMKIRTWKSLVKYHMYISKKAKK", "aminoacids": "MIVWQVDRMKIRTWKSLVKYHMYISKKAKK*AYRHHYETTHPRISSEVHIPLGGARLVITTY*GLHTGEKDWHLGQGVSIEWRKRRYSTQVDPDLADHLIHVHYFDCFSESAIRNAILGHRVSPRCEYQAGHNKVRSLQYLALTALITPKKIKPPLPSVKKLTEDR*NKPQKTKGHRKSHTMNRH*", "nucleotides": "ATGATTGTGTGGCAAGTAGACAGGATGAAGATTAGAACATGGAAAAGTTTAGTAAAATACCATATGTATATTTCAAAGAAAGCCAAGAAATAGGCTTATAGACACCATTACGAAACCACTCATCCAAGAATAAGTTCAGAAGTACATATCCCACTAGGAGGTGCTAGATTAGTAATAACAACATATTAAGGTCTGCATACAGGAGAAAAAGACTGGCATTTAGGCCAGGGAGTCTCCATAGAATGGAGAAAAAGGAGATATAGCACACAAGTAGACCCTGACTTAGCAGACCATCTAATTCATGTGCATTATTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACATAGAGTTAGCCCTAGGTGTGAATATCAAGCAGGACATAACAAAGTAAGATCTCTACAATACTTGGCACTAACAGCATTAATAACACCAAAGAAGATAAAGCCACCTTTGCCTAGTGTAAAGAAACTGACAGAAGATAGATAGAACAAGCCCCAGAAGACCAAAGGCCACAGAAAGAGCCATACAATGAATAGACACTAG" @@ -2187,7 +2187,7 @@ "subtype_start": 5558, "subtype_end": 5850, "orientation": "forward", - "distance": 2.052564102564103, + "distance": 0.7680130480667754, "protein": "MLFIHFRIKCHHSRIGIVLQRRARNRASRS", "aminoacids": "MEKKEI*HTSRP*LSRPSNSCALF*LFFRICYKKCHIRT*S*P*V*ISSRT*QSKISTILGTNSINNTKEDKATFA*CKETDRR*IEQAPEDQRPQKEPYNE*TLELLEELKREAVRHFPRPWLQNLRQYIYETYKDTWTRVEAIIRILQQMLFIHFRIKCHHSRIGIVLQRRARNRASRS*T", "nucleotides": "ATGGAGAAAAAGGAGATATAGCACACAAGTAGACCCTGACTTAGCAGACCATCTAATTCATGTGCATTATTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACATAGAGTTAGCCCTAGGTGTGAATATCAAGCAGGACATAACAAAGTAAGATCTCTACAATACTTGGCACTAACAGCATTAATAACACCAAAGAAGATAAAGCCACCTTTGCCTAGTGTAAAGAAACTGACAGAAGATAGATAGAACAAGCCCCAGAAGACCAAAGGCCACAGAAAGAGCCATACAATGAATAGACACTAGAGCTTTTAGAAGAGCTTAAGAGAGAAGCTGTTAGACATTTCCCTAGACCATGGCTACAAAACCTAAGACAATATATCTATGAAACTTATAAAGATACTTGGACAAGAGTAGAAGCCATAATAAGAATTCTGCAACAAATGCTGTTTATTCATTTCAGAATTAAGTGTCACCATAGCAGAATAGGCATTGTTCTGCAAAGAAGAGCAAGAAATAGAGCCAGTAGATCATAGACT" @@ -2199,7 +2199,7 @@ "subtype_start": 5830, "subtype_end": 6045, "orientation": "forward", - "distance": 2.1097222222222225, + "distance": 0.7728706624605679, "protein": "MKLIKILGQE", "aminoacids": "MKLIKILGQE*KP**EFCNKCCLFISELSVTIAE*ALFCKEEQEIEPVDHRLEP*KHPGSQPRTPCTNCYCKKCCFHCQVCFIQKALGISYGRKKRRQRRRSPQDSQTHQVPLPKQ", "nucleotides": "ATGAAACTTATAAAGATACTTGGACAAGAGTAGAAGCCATAATAAGAATTCTGCAACAAATGCTGTTTATTCATTTCAGAATTAAGTGTCACCATAGCAGAATAGGCATTGTTCTGCAAAGAAGAGCAAGAAATAGAGCCAGTAGATCATAGACTAGAGCCCTAGAAGCATCCAGGAAGTCAGCCTAGGACTCCTTGTACCAATTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTGTGTTTTATACAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGAGACGAAGATCTCCTCAAGACAGTCAGACTCATCAAGTTCCTCTACCAAAGCAG" @@ -2211,7 +2211,7 @@ "subtype_start": 5969, "subtype_end": 6045, "orientation": "forward", - "distance": 0.6923076923076923, + "distance": 0.5275498241500586, "protein": "MAGRSGDRDEDLLKTVRLIKFLYQSS", "aminoacids": "MAGRSGDRDEDLLKTVRLIKFLYQSS", "nucleotides": "ATGGCAGGAAGAAGCGGAGACAGAGACGAAGATCTCCTCAAGACAGTCAGACTCATCAAGTTCCTCTACCAAAGCAGT" @@ -2223,7 +2223,7 @@ "subtype_start": 6061, "subtype_end": 6310, "orientation": "forward", - "distance": 1.3926829268292686, + "distance": 0.6919534658264663, "protein": "TIVGIKYKKILRQRKIDRIINRIRKRAEDSGNESEKDQEELSALVVEIRHDAP", "aminoacids": "MQPLKILAIVALVVAAIIAIVV*TIVGIKYKKILRQRKIDRIINRIRKRAEDSGNESEKDQEELSALVVEIRHDAP*DVDDL*", "nucleotides": "ATGCAACCTTTAAAGATATTAGCAATAGTAGCATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTAGACCATAGTAGGCATAAAATATAAGAAAATATTAAGACAAAGAAAAATAGATAGAATAATTAATAGAATAAGAAAAAGAGCAGAAGACAGTGGCAATGAGAGCGAAAAAGATCAGGAAGAATTGTCAGCACTTGTAGTAGAAATAAGGCACGATGCTCCTTAAGATGTTGATGATCTGTAG" @@ -2235,7 +2235,7 @@ "subtype_start": 6224, "subtype_end": 8795, "orientation": "forward", - "distance": 1.8896028037383144, + "distance": 0.7529489530867413, "protein": "MTNCSFNITTEIRDKVRKEYALFYKLDVMPIDKDNTSYTLINCNTSVITQACPKVTFEPIPIHYCTPASFAILKCKDEMFNRTRPCKNVSTVQCTHRIRPVVSTQLLLNSSLAEKKIVLRSENFTDNTKNIIVQLNRSIVINCTRPNNNTRKSISVAKRAIYATRQIIEDIRQAHCNISETD", "aminoacids": "MRAKKIRKNCQHL**K*GTMLLKMLMICSAAENL*VTVYYEVPV*RDANTTLFCASDAKAYDTEVHNV*ATHACVPTDPNPHEVELKNVTENFNM*KNNMVDQMHEDIINL*DQSLKPCAKLTPLCVTLNCTDLKNNTVGNQTNYHLNETNTIQRKEMTNCSFNITTEIRDKVRKEYALFYKLDVMPIDKDNTSYTLINCNTSVITQACPKVTFEPIPIHYCTPASFAILKCKDEMFNRTRPCKNVSTVQCTHRIRPVVSTQLLLNSSLAEKKIVLRSENFTDNTKNIIVQLNRSIVINCTRPNNNTRKSISVAKRAIYATRQIIEDIRQAHCNISETD*SDTLSKIVEKLKEKFRKNKTIIFKQSSREDIEIETHSFNCREEFFYCNTTRLFNST*SVNRTSINRTNNKNITLPCRIKQIINRWQEVRKAMYAPPISKIIRCSSNITGLILTRDSSTTNSKEETFRPRERNMKDN*RSELYKYKVVKIEPLKVAPTKAQRKVVQREKRAIRTLGAMFLRFLRTAGSTIGAASLTLTVQARQLLSGIVQQQNNLLKAIEAQQHMLQLTV*GIKQLQARVLSVERYLQDQQLLKI*SCSRKLICTTTVP*NTS*SNKSYSTI*DNMT*MQ*DREIQNYTKIIYNLLKESQIQQKKNEKELLELDQ*ANL*N*FSITKWL*YIKIFIMIVGGLVSLKIIFAVFSIVNRVRQGYSPLSLQTLLPTPRRPDRPERIEEEGEKRDRGRSRRLVTRFLPLI*DDLQSLCLFSYHHLKDLLLIVLKTVQILGHKK*EILKY**SLLQY*IQELKNSAVSLLNTIAIAVAERTDKVIEVRQKISRAFLHIPRKIRQGLEKALQ*NKWQVVKKLYG*", "nucleotides": "ATGAGAGCGAAAAAGATCAGGAAGAATTGTCAGCACTTGTAGTAGAAATAAGGCACGATGCTCCTTAAGATGTTGATGATCTGTAGTGCTGCGGAAAATTTGTAAGTCACAGTCTATTATGAGGTACCTGTGTAAAGAGATGCAAATACCACTCTATTCTGTGCATCAGATGCTAAAGCATATGATACAGAAGTACATAATGTTTAGGCCACACATGCCTGTGTACCCACAGACCCTAACCCACATGAAGTAGAATTGAAAAATGTGACAGAAAATTTTAATATGTAGAAAAATAACATGGTAGACCAGATGCATGAGGATATAATCAATTTATGAGATCAAAGCCTAAAGCCATGTGCAAAATTGACCCCACTCTGTGTTACTTTAAATTGCACTGATTTAAAAAATAATACTGTAGGAAATCAAACAAATTATCATCTCAATGAAACTAATACAATACAAAGAAAAGAAATGACAAACTGCTCTTTCAATATCACCACAGAGATAAGAGATAAAGTGCGAAAAGAATATGCACTTTTTTATAAACTTGATGTCATGCCAATAGATAAAGATAATACAAGTTATACATTGATAAATTGCAATACCTCAGTCATTACACAGGCCTGTCCAAAGGTAACCTTTGAACCAATTCCCATACATTATTGTACTCCAGCTAGTTTTGCAATTCTAAAGTGTAAAGATGAGATGTTCAATAGAACAAGACCATGTAAGAATGTCAGCACAGTACAATGTACACATAGAATTAGACCAGTAGTGTCAACTCAACTGCTGTTAAATAGTAGCCTAGCAGAAAAAAAGATAGTACTTAGATCTGAAAATTTCACAGACAATACTAAAAATATAATAGTACAGCTAAATAGATCTATAGTAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAGTGTAGCAAAGAGAGCAATTTATGCAACAAGACAGATAATAGAAGATATAAGACAAGCACATTGTAACATCAGTGAGACAGATTGAAGTGACACTTTAAGCAAAATAGTTGAAAAATTAAAGGAAAAATTTAGAAAAAATAAAACAATAATCTTTAAGCAATCATCAAGAGAGGACATAGAAATTGAAACGCACAGTTTTAATTGTAGAGAGGAATTTTTCTACTGTAACACAACACGACTGTTTAATAGTACTTGAAGTGTTAATAGAACTAGCATAAACAGAACTAACAATAAAAATATCACACTCCCGTGCAGAATAAAACAAATTATCAACAGGTGGCAGGAAGTAAGAAAAGCAATGTATGCCCCTCCTATCAGTAAGATAATTAGGTGCTCATCAAATATTACAGGACTAATATTAACAAGAGATAGTAGTACAACTAATAGTAAAGAAGAGACCTTCAGACCTAGAGAAAGAAATATGAAGGACAATTAGAGAAGTGAATTATATAAATACAAAGTAGTAAAAATTGAGCCATTAAAAGTAGCACCCACCAAGGCACAAAGAAAAGTAGTGCAGAGAGAAAAAAGAGCAATAAGAACGTTAGGAGCTATGTTCCTCAGGTTCTTAAGAACAGCAGGAAGCACTATAGGCGCAGCGTCACTGACGCTGACAGTACAAGCCAGACAATTATTGTCTGGTATAGTGCAACAGCAGAACAATCTGCTGAAGGCTATTGAGGCGCAACAGCATATGTTGCAACTCACAGTCTAAGGCATCAAACAGCTCCAGGCAAGAGTCCTGTCTGTAGAAAGATACCTACAAGATCAACAGCTCCTGAAGATTTGAAGTTGCTCTAGAAAACTCATTTGCACCACTACTGTGCCTTAGAATACTAGTTAGAGCAATAAATCTTACAGTACCATCTAAGATAACATGACCTAGATGCAGTAGGACAGAGAAATTCAAAATTACACAAAGATAATATACAACTTACTTAAAGAATCGCAAATCCAACAGAAAAAGAATGAAAAAGAATTATTAGAACTAGATCAATGAGCAAATTTGTAGAATTAGTTTAGTATAACAAAATGGCTATAGTATATAAAAATATTCATAATGATAGTAGGAGGCTTAGTAAGTTTAAAAATAATTTTTGCTGTATTTTCTATAGTGAATAGAGTTAGGCAAGGATACTCACCATTATCATTGCAGACCCTCCTCCCAACCCCAAGAAGACCAGACAGGCCCGAAAGAATAGAAGAAGAAGGTGAAAAGAGAGACAGAGGCAGATCCAGAAGATTAGTGACTAGATTCTTACCACTCATCTAAGACGACCTGCAAAGCCTGTGCCTTTTCAGCTACCACCACTTAAAAGACTTACTCTTGATTGTGCTGAAGACTGTGCAAATTCTAGGACACAAGAAGTAAGAGATCCTCAAGTACTAGTAGAGTCTCCTGCAGTATTAAATTCAGGAACTAAAGAATAGTGCTGTTAGCTTGCTCAATACCATAGCTATCGCAGTAGCTGAAAGAACAGATAAAGTTATAGAAGTAAGACAAAAAATTAGCAGAGCTTTTCTCCACATACCTAGAAAGATAAGACAAGGCTTAGAAAAGGCTTTGCAATAAAATAAGTGGCAAGTAGTCAAAAAGTTGTATGGCTAG" @@ -2247,7 +2247,7 @@ "subtype_start": 8376, "subtype_end": 8469, "orientation": "forward", - "distance": 0.8, + "distance": 0.5633802816901408, "protein": "RPSSQPQEDQTGPKE", "aminoacids": "RPSSQPQEDQTGPKE*KKKVKRETEADPED**", "nucleotides": "AGACCCTCCTCCCAACCCCAAGAAGACCAGACAGGCCCGAAAGAATAGAAGAAGAAGGTGAAAAGAGAGACAGAGGCAGATCCAGAAGATTAGTGA" @@ -2259,7 +2259,7 @@ "subtype_start": 8377, "subtype_end": 8653, "orientation": "forward", - "distance": 1.3725274725274725, + "distance": 0.6888374145157732, "protein": "ILTTHLRRPAKPVPFQLPPLKRLTLDCAEDCANSRTQEVRDPQVLVESPAVLNSGTKE", "aminoacids": "DPPPNPKKTRQARKNRRRR*KERQRQIQKISD*ILTTHLRRPAKPVPFQLPPLKRLTLDCAEDCANSRTQEVRDPQVLVESPAVLNSGTKE*", "nucleotides": "GACCCTCCTCCCAACCCCAAGAAGACCAGACAGGCCCGAAAGAATAGAAGAAGAAGGTGAAAAGAGAGACAGAGGCAGATCCAGAAGATTAGTGACTAGATTCTTACCACTCATCTAAGACGACCTGCAAAGCCTGTGCCTTTTCAGCTACCACCACTTAAAAGACTTACTCTTGATTGTGCTGAAGACTGTGCAAATTCTAGGACACAAGAAGTAAGAGATCCTCAAGTACTAGTAGAGTCTCCTGCAGTATTAAATTCAGGAACTAAAGAATAG" @@ -2271,7 +2271,7 @@ "subtype_start": 8796, "subtype_end": 9417, "orientation": "forward", - "distance": 2.0414634146341464, + "distance": 0.7670454545454546, "protein": "MSLHRMEDSEGEVLMWKFDSSLAFHHRAREQHPEYYKDC", "aminoacids": "MAR*PAVKERIERVNPRPAAKKEQAEPAAAKVRAASRDLEKYRAITSSNTSTTNAACA*LEAQEEEEVGFPVRPQVPLRPMTYKAALNLSHFLKEKGGLEGLI*SQRRQEILDLWVYHTQGYFPDWQNYTPGPGVRNPLTFGWCFKLVPVDPDQVEKANEGENNCLLHPMSLHRMEDSEGEVLMWKFDSSLAFHHRAREQHPEYYKDC*", "nucleotides": "ATGGCTAGATAGCCTGCTGTAAAAGAAAGAATAGAAAGAGTTAATCCAAGGCCTGCTGCAAAGAAAGAACAAGCTGAGCCAGCAGCAGCTAAGGTAAGAGCAGCATCTCGAGACTTAGAAAAATATAGAGCAATCACAAGTAGCAATACATCAACTACTAATGCTGCTTGTGCCTAGCTAGAAGCACAAGAGGAAGAAGAAGTAGGCTTTCCAGTCAGACCTCAAGTACCTTTAAGACCAATGACTTACAAAGCAGCTTTAAATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTAGTCCCAGAGAAGACAAGAAATCCTTGATTTGTGGGTTTACCACACACAAGGATACTTCCCTGATTGGCAAAACTACACACCAGGACCAGGGGTCAGAAATCCACTGACCTTTGGATGGTGCTTCAAGCTAGTACCAGTTGATCCAGACCAAGTAGAGAAGGCCAATGAAGGAGAGAACAACTGCTTGCTACACCCTATGAGCCTGCATAGGATGGAAGACTCAGAGGGAGAAGTGTTAATGTGGAAGTTTGACAGCAGCCTGGCGTTTCATCATAGAGCCCGAGAACAACATCCGGAGTACTACAAAGACTGCTGA" @@ -2285,7 +2285,7 @@ "subtype_start": 789, "subtype_end": 2292, "orientation": "forward", - "distance": 1.8444000000000005, + "distance": 0.7484174646972894, "protein": "MTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVRGPGHKARVLAEAMSQVTKSASIIVQGGNFKNQRKNVKCFNCGKERHTAKNCRAPKKKGC", "aminoacids": "MGARASVLSGGKLDR*EKIYLRPEGKKKYRLKHIV*ASRELERFAVNPGLLESSEGCRQILGQLQPALQTGSEELRSLYNTVAVLYCVHQRINVKDTKEALDKIEEEQNKSKKKAQQAAADTGNSSNSQVSQNYPIVQNLQGQIVHQPLSPRTLNA*VKVIEEKAFSPEVIPMFSALSERATPQDLNTMLNTVRGHQAAMQMLKETINDEAAE*DRLHPVHAGPIAPGQMKEPRGSDIAGTTSTLQEQIR*MTHNPPIPVGEIYKRWIILRLNKIVRMYSPVSILDIRQRPKEPFKDYVDRFYKTLKAEQASQDVKN*MTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVRGPGHKARVLAEAMSQVTKSASIIVQGGNFKNQRKNVKCFNCGKERHTAKNCRAPKKKGC*KCRKERHQMKDCTKRPD*DG*FFKEDLAFPQGKAREFSPEQTRANSPASRELQV*", "nucleotides": "ATGGGTGCTAGAGCGTCAGTATTAAGCGGCGGAAAATTAGATAGATAGGAAAAAATTTACCTAAGGCCAGAAGGAAAGAAAAAATATAGATTAAAACATATAGTATAGGCAAGCAGGGAGCTAGAACGATTCGCAGTCAACCCTGGCCTGTTAGAGTCATCAGAAGGCTGCAGGCAAATTCTAGGACAGCTACAACCAGCCCTTCAGACAGGATCAGAAGAACTTAGATCATTATATAATACAGTAGCAGTCCTCTATTGCGTACATCAAAGGATAAATGTAAAAGACACCAAGGAAGCTCTAGACAAAATAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAACAAGCAGCAGCTGACACAGGAAACAGCAGCAACAGCCAGGTCAGCCAAAATTACCCTATAGTGCAGAACCTACAGGGGCAAATAGTACATCAACCATTATCACCTAGAACTTTAAATGCATAGGTAAAAGTAATAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCACTATCAGAAAGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGAGAGGACATCAAGCAGCCATGCAGATGTTAAAAGAAACCATCAATGATGAGGCTGCAGAATAGGATAGATTGCATCCAGTGCATGCAGGCCCTATTGCACCAGGCCAGATGAAAGAACCAAGAGGAAGTGACATAGCAGGAACCACTAGTACCCTTCAGGAACAAATAAGATAGATGACACATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCCTAAGGCTAAACAAAATAGTAAGAATGTATAGCCCTGTCAGCATTTTGGACATAAGACAAAGACCAAAAGAACCCTTTAAAGATTATGTAGACCGATTCTATAAAACTCTAAAGGCTGAGCAAGCGTCACAGGATGTAAAAAATTAGATGACAGAAACCTTGTTAGTCCAAAATGCGAATCCAGATTGTAAGACCATTTTAAAAGCATTAGGACCAGCAGCTACATTAGAAGAAATGATGACAGCATGTCAGGGAGTAAGAGGACCCGGCCACAAGGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAACAAAGTCAGCCTCCATAATAGTGCAAGGAGGCAATTTTAAGAACCAAAGAAAGAATGTTAAGTGTTTCAATTGTGGCAAAGAAAGACACACAGCCAAAAATTGCAGGGCCCCTAAGAAAAAAGGCTGTTAAAAATGTAGAAAGGAAAGACACCAAATGAAAGATTGTACTAAGAGACCAGACTAAGACGGCTAATTTTTTAAGGAAGATTTGGCCTTCCCACAAGGGAAGGCCAGAGAATTTTCTCCAGAGCAGACCAGAGCCAACAGCCCCGCCAGCAGAGAGCTTCAGGTTTGA" @@ -2297,7 +2297,7 @@ "subtype_start": 2084, "subtype_end": 5096, "orientation": "forward", - "distance": 1.89531405782652, + "distance": 0.7535099054247956, "protein": "AEIKQEFSIPYNPQSQRVVKSMNNKLKKIIGQVKDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFQVYYRDSREPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKILRDYRKQMAGDDCVASRQDED", "aminoacids": "FFKEDLAFPQGKAREFSPEQTRANSPASRELQV*GRGNSSSSEAGDERPRTVSFSFPQITLWQRPIISIKIGGQLKEALLDTGADDTVLEEINLPGK*KPKMIKRIRSFIKVRQYDQVPIEICGHKAIGTVLIGPTPVNIIRRNLLTQLSCTLNFPISPIETVPVKLKSGIDSPRVKQWPLTEEKIKALIEICAEIEKEKKITKIRPENPYNTPVFAIKKKDSTK*KKLVDFRELNKRTQDF*EVQLRIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNEAPEVKYQYNVLPQR*KRSPAIFQSSMTKILEPFRKENPDIVIYQYIDDLYVRSDLEIEQHRTKIEELRQHLLR*GLTTPDKKHQKKPPFL*ISYELHPDK*TVQPIQLPDKDS*TVNDIQKLVRKLN*ASQIYPEIKVKQLCKLLRGTKALTEVVPLTEEAELELAENREILKEPVHGAYYDPSKDLIAEVQKQRRDQ*TYQIYQEPFKNLKTEKYARTRGAHTNDVKQLTEAVQKIALEAIVI*RKTPKFKLPIQKET*KMWWTKYWQAT*IPE*EFVNTPPLVKL*YQLEKEPIVRAETFYVNKAANRKTKLRKAEYVTDRRRQKVVSLIDTTNQRTKLHAIHLALQDSGSTVNIVTDSQYALKIIQAQPDKSESELVSQIIEQLIKKEKIYLA*VPAHKRIEGNEQVDKLVSNRIRRVLFLDRIDKAQEEHEKYHSN*RAMASNFNLPPVVAKEIVASCDKCQLKGEPMHRQVDCSPGIWQLDCTHLERKIILVAVHVASRYIEAEVIAAETGQETAYFILKLAGR*PVKIIHTDNGSNFTSTTVKAAC**AEIKQEFSIPYNPQSQRVVKSMNNKLKKIIGQVKDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFQVYYRDSREPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKILRDYRKQMAGDDCVASRQDED*NIEQFSKTPYAYFKESSEIGLQTSL*", "nucleotides": "TTTTTTAAGGAAGATTTGGCCTTCCCACAAGGGAAGGCCAGAGAATTTTCTCCAGAGCAGACCAGAGCCAACAGCCCCGCCAGCAGAGAGCTTCAGGTTTGAGGAAGAGGCAACAGCTCCTCCTCAGAAGCAGGAGACGAAAGACCAAGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCATAATATCAATAAAAATAGGAGGGCAACTAAAAGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATAAATTTGCCAGGAAAATAGAAACCAAAAATGATAAAAAGAATTAGAAGTTTTATCAAAGTAAGACAGTATGATCAGGTACCCATAGAAATTTGTGGACATAAAGCTATAGGTACAGTATTAATAGGACCTACGCCAGTCAACATAATTAGAAGAAATCTGTTGACCCAGCTTAGTTGCACTTTAAATTTTCCCATCAGTCCTATTGAAACTGTACCAGTAAAATTAAAGTCAGGAATAGATAGCCCAAGAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAGGCATTAATAGAAATTTGTGCAGAAATAGAAAAGGAAAAGAAAATTACAAAAATTAGGCCTGAGAATCCATATAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGAAAAAAATTAGTAGATTTCCGAGAACTTAATAAGAGAACACAAGACTTCTAAGAAGTTCAACTAAGAATACCACATCCCGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTAGATGTAGGTGATGCATATTTTTCAGTTCCTTTAGACAAAGACTTCAGAAAGTATACTGCATTTACCATACCCAGTATAAACAATGAGGCACCAGAAGTTAAATATCAGTACAATGTGCTTCCACAGAGATAGAAAAGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGGAAAATCCAGACATAGTTATCTATCAATACATAGATGATTTGTATGTAAGATCTGACTTAGAAATAGAGCAGCACAGAACAAAAATAGAAGAACTGAGACAACATCTGTTAAGGTGAGGACTCACCACACCAGACAAGAAACATCAGAAAAAACCTCCATTTCTTTAGATAAGTTATGAACTCCATCCTGATAAATAGACAGTACAGCCTATACAGCTGCCAGACAAAGACAGCTAGACTGTCAATGACATACAGAAGTTAGTAAGAAAGTTGAATTAGGCAAGCCAGATCTATCCAGAGATTAAAGTAAAGCAATTATGTAAACTCCTTAGAGGAACCAAAGCACTAACAGAAGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGAGAGATTCTAAAAGAACCAGTACATGGAGCATATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGAGGAGAGACCAATAGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGAGAAATATGCAAGAACGAGAGGTGCCCACACTAATGATGTAAAACAGTTAACAGAGGCAGTGCAAAAAATAGCCCTAGAAGCCATAGTAATATGAAGAAAGACTCCTAAATTTAAACTACCTATACAAAAAGAAACATAGAAAATGTGGTGGACAAAGTATTGGCAAGCCACCTAGATTCCTGAGTAAGAATTTGTCAATACCCCTCCCTTAGTAAAACTATAGTACCAGTTAGAGAAAGAACCCATAGTAAGAGCAGAAACTTTCTATGTAAATAAGGCAGCTAATAGAAAGACTAAATTAAGAAAAGCAGAGTATGTTACGGACAGAAGAAGACAAAAGGTTGTCTCCCTAATAGACACAACAAATCAGAGGACTAAGTTACACGCAATTCATCTAGCTTTGCAGGATTCAGGATCAACAGTAAACATAGTGACAGACTCACAATATGCCTTAAAGATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAGTCAAATAATAGAGCAGCTAATAAAAAAAGAAAAGATTTACCTGGCATAAGTCCCAGCACACAAAAGAATTGAAGGAAATGAACAAGTAGATAAATTAGTCAGTAATAGAATCAGAAGAGTACTATTTCTAGATAGAATAGATAAAGCCCAAGAAGAACATGAAAAATATCACAGTAATTAGAGAGCAATGGCTAGTAATTTTAACCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAGTGTCAGTTAAAAGGAGAACCTATGCATAGACAAGTAGACTGTAGTCCAGGAATATGGCAACTAGATTGTACACATTTAGAAAGAAAAATTATCCTAGTAGCAGTTCATGTAGCCAGTAGATACATAGAAGCAGAAGTTATTGCAGCAGAAACAGGGCAGGAAACAGCATACTTTATCTTAAAATTAGCAGGAAGATAGCCAGTAAAAATAATACATACAGACAATGGCAGCAATTTCACCAGCACTACAGTTAAAGCCGCCTGTTAGTAGGCAGAGATCAAGCAGGAATTTAGTATTCCCTACAATCCTCAAAGTCAAAGAGTAGTAAAATCTATGAATAATAAATTAAAGAAAATTATAGGACAGGTAAAAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATTCATAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAATAGACATAATAGCAACAGACATACAAACTAAAGAACTACAAAAACAAATTTCAAAAATTCAAAATTTTCAGGTTTATTACAGGGACAGCAGAGAACCACTTTGGAAAGGACCAGCAAAGCTCCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATCCTTAGAGATTATAGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATAGAACAGTTTAGTAAAACACCATATGCATATTTCAAAGAAAGCTCAGAGATAGGTTTACAGACATCACTATGA" @@ -2309,7 +2309,7 @@ "subtype_start": 5040, "subtype_end": 5619, "orientation": "forward", - "distance": 2.064583333333333, + "distance": 0.7690516839981375, "protein": "MIVWQVDRMRIRT", "aminoacids": "MIVWQVDRMRIRT*NSLVKHHMHISKKAQR*VYRHHYESHNPKTSSEVHIPLEEARLVIKTY*GLHTGERDWHLGQGVSIEWRKRRYSTQVDPGLADQLIHLYYFDCFSESAIRNAILGHRVSPRCEYQAGHNKVGSLQYLALTALITPKRRKPPLPSVTKLTEDRWNKSQRTKGHKRSHTINGH*", "nucleotides": "ATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATAGAACAGTTTAGTAAAACACCATATGCATATTTCAAAGAAAGCTCAGAGATAGGTTTACAGACATCACTATGAAAGCCATAATCCAAAAACAAGTTCAGAAGTACACATCCCATTAGAGGAAGCAAGATTGGTAATAAAAACATATTAAGGTCTGCATACAGGAGAAAGAGACTGGCATTTAGGCCAGGGAGTATCCATAGAATGGAGGAAAAGGAGATATAGCACACAAGTAGACCCTGGCCTGGCAGACCAACTAATTCACCTGTATTATTTTGATTGTTTTTCAGAATCTGCTATAAGGAATGCCATATTAGGACATAGAGTTAGTCCTAGGTGTGAATATCAGGCAGGACATAACAAGGTAGGATCCCTACAATACTTGGCATTAACAGCATTAATAACACCAAAAAGGAGAAAGCCACCTTTGCCCAGTGTTACAAAATTAACAGAGGACAGATGGAACAAGTCCCAGAGGACCAAAGGCCACAAAAGGAGCCATACAATAAATGGACATTAG" @@ -2321,7 +2321,7 @@ "subtype_start": 5558, "subtype_end": 5850, "orientation": "forward", - "distance": 1.0679487179487188, + "distance": 0.6326902627981166, "protein": "MEQVPEDQRPQKEPYNKWTLELLEELKSEAVRHFPRPWLHSLGQYIYETYGDT", "aminoacids": "MEQVPEDQRPQKEPYNKWTLELLEELKSEAVRHFPRPWLHSLGQYIYETYGDT*AEVEAIIRTLQQLLFIHFRIRCQHSRIGIIRQRRARNRASRS*L", "nucleotides": "ATGGAACAAGTCCCAGAGGACCAAAGGCCACAAAAGGAGCCATACAATAAATGGACATTAGAGCTCTTAGAAGAGCTTAAGAGTGAAGCTGTTAGGCATTTTCCTAGACCATGGCTTCATAGCTTAGGACAATATATCTATGAAACTTATGGAGATACTTAGGCAGAGGTAGAAGCCATAATAAGAACCCTGCAACAACTGTTGTTCATTCATTTCAGAATTAGGTGTCAACATAGCAGGATAGGAATTATTCGACAGAGGAGAGCAAGAAATAGAGCCAGTAGATCCTAGCTT" @@ -2333,7 +2333,7 @@ "subtype_start": 5830, "subtype_end": 6045, "orientation": "forward", - "distance": 1.0958333333333334, + "distance": 0.6386595434677027, "protein": "MTACNNCYCKRCCFHCQVCFTTKSLGISYGRKKQRQRRRASHSSQNHQAALPEQ", "aminoacids": "MTACNNCYCKRCCFHCQVCFTTKSLGISYGRKKQRQRRRASHSSQNHQAALPEQ", "nucleotides": "ATGACTGCTTGTAACAATTGCTATTGTAAACGGTGTTGCTTTCATTGCCAAGTTTGCTTCACAACAAAAAGCTTAGGCATCTCCTATGGCAGGAAGAAGCAGAGACAGCGACGAAGAGCTTCTCACAGCAGTCAGAATCATCAAGCGGCTCTACCAGAGCAG" @@ -2345,7 +2345,7 @@ "subtype_start": 5969, "subtype_end": 6045, "orientation": "forward", - "distance": 0.7692307692307692, + "distance": 0.5537098560354374, "protein": "MAGRSRDSDEELLTAVRIIKRLYQSS", "aminoacids": "MAGRSRDSDEELLTAVRIIKRLYQSS", "nucleotides": "ATGGCAGGAAGAAGCAGAGACAGCGACGAAGAGCTTCTCACAGCAGTCAGAATCATCAAGCGGCTCTACCAGAGCAGT" @@ -2357,7 +2357,7 @@ "subtype_start": 6061, "subtype_end": 6310, "orientation": "forward", - "distance": 0.9975609756097563, + "distance": 0.6167068757539205, "protein": "MHALEIAAIAGLVVAAIIAIVVWSIVLIEYKKILRQRKIDRLINRIRERAEDSGNESDEDQEELSALVEMRHLVP", "aminoacids": "MHALEIAAIAGLVVAAIIAIVVWSIVLIEYKKILRQRKIDRLINRIRERAEDSGNESDEDQEELSALVEMRHLVP*DSNDM*", "nucleotides": "ATGCATGCCTTAGAAATAGCAGCAATAGCAGGATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGTCTATAGTATTAATAGAATATAAGAAAATTTTAAGACAAAGGAAAATAGACAGGTTAATTAATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGACGAGGACCAAGAGGAATTATCCGCACTTGTGGAGATGAGGCATCTTGTTCCTTAAGATAGTAATGATATGTAG" @@ -2369,7 +2369,7 @@ "subtype_start": 6224, "subtype_end": 8795, "orientation": "forward", - "distance": 1.878154205607472, + "distance": 0.7518167619083244, "protein": "MKEKGEIKNCSFNVTTGIRDKVTKEHALFYKLNVVPIDEDSKNTTGKYKMINCNTSVITQACPKVSFKPIPIHFCAPASFAILKCKDKKFNRTGECRNVSTVQCTHRIRPVVSTQLLLNGSLAEEKIVIRSANLSNNAKTIIVQLNKSVKINCTRPNNNTRRSIHIGPGRAFYRTDIIRDIRQAHYNISKKD", "aminoacids": "MRVTRTKRNYPHLWR*GILFLKIVMICSANNL*VTVYYKVPV*KEATTTLFCASDAKAYETEKHNV*ATHACVPTDPSPQEVALENVTETFNM*KNDMVEQMHEDIISL*DQSLKPCVKLTPLCVTLNCTDNLNLTCPNNNTCSNNTNYNMKEKGEIKNCSFNVTTGIRDKVTKEHALFYKLNVVPIDEDSKNTTGKYKMINCNTSVITQACPKVSFKPIPIHFCAPASFAILKCKDKKFNRTGECRNVSTVQCTHRIRPVVSTQLLLNGSLAEEKIVIRSANLSNNAKTIIVQLNKSVKINCTRPNNNTRRSIHIGPGRAFYRTDIIRDIRQAHYNISKKD*NDTLKQIVIKLKEKFKNKTIVFTQSSGEDPEIVMHSFNCREEFFYCNTTQLFNST*NNST*NSTDN*NSTESNSTITLPCRIKQIINLWQEVRRAMYAPPIQRQIRCSSNITGLLLVRDGRSNNSSNDTETFRPRGRDMKDN*RSKLYKYKVVKIKPLRIAPTHAKRRVVQKEKRAIRLEAFFLRFLRAAGSTIGAASVTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTV*GIKQLQAKVLALERYLKDQQLLRI*SCSGKLICTTNVPWNISWSPRWNRSLDKI*TNMT*KQ*EKEIDNYTDIIYNLIEQSQNQQEQNEQDLLALDK*ASL*N*FDITQ*L*YIKIFIIIVRGLISLRIVFTILSIVNKVRQGYSPLSLQTLLPTQRGPDRPERTEERGRKKDRGTSTRLVHRFLALI*DDLRSLFLFSYHRLKDLLLIAARIVELLGRRK*EALKY**NLLQY*SQEIKNSAVSLLNTTAIAVAERTDKIIEVLQRGFRAILHIPTRIRQGLEKALL*", "nucleotides": "ATGAGAGTGACGAGGACCAAGAGGAATTATCCGCACTTGTGGAGATGAGGCATCTTGTTCCTTAAGATAGTAATGATATGTAGTGCCAACAACTTGTAGGTCACAGTCTATTATAAAGTACCTGTATAGAAAGAAGCAACTACCACTCTATTTTGTGCATCAGATGCTAAAGCATATGAGACAGAGAAGCATAATGTTTAGGCAACCCATGCCTGTGTACCCACAGACCCCAGCCCACAGGAAGTAGCATTAGAAAATGTGACAGAAACATTTAACATGTAGAAAAATGACATGGTAGAGCAGATGCATGAGGATATAATCAGTTTATAGGATCAAAGCCTAAAGCCATGTGTGAAACTAACCCCACTCTGTGTTACTTTAAATTGCACTGATAATTTAAATCTAACTTGCCCTAACAATAATACTTGTAGTAATAATACTAATTATAATATGAAAGAAAAAGGAGAAATAAAAAACTGCTCTTTCAATGTCACCACAGGAATAAGAGATAAGGTGACAAAAGAACATGCACTTTTCTATAAACTTAATGTAGTACCAATAGATGAAGATAGTAAAAATACTACGGGCAAATATAAGATGATAAATTGTAACACCTCAGTCATTACACAAGCCTGTCCAAAGGTATCCTTTAAGCCAATTCCCATACATTTTTGTGCCCCGGCTAGTTTTGCGATTCTAAAGTGTAAAGATAAGAAATTCAATAGAACAGGAGAATGTAGAAATGTCAGCACAGTACAATGTACACATAGAATTAGGCCAGTAGTATCAACTCAACTGCTGCTAAACGGCAGTCTAGCAGAAGAAAAGATAGTAATTAGATCTGCCAATCTCTCGAACAATGCTAAAACCATAATAGTACAGCTGAATAAATCTGTAAAAATTAATTGTACAAGACCCAACAATAATACAAGAAGAAGTATACACATAGGACCAGGGAGGGCATTTTATAGAACAGACATAATAAGAGATATAAGACAAGCGCATTATAACATTAGTAAGAAAGATTAGAATGACACTTTAAAACAGATAGTTATAAAATTAAAAGAAAAATTTAAGAATAAAACAATAGTCTTTACTCAATCCTCAGGAGAAGACCCAGAGATAGTGATGCATAGTTTTAATTGTAGAGAGGAATTTTTCTACTGTAATACAACACAGCTGTTTAATAGTACTTAGAATAATAGTACTTAGAATAGTACTGATAATTAGAATAGTACTGAATCAAATAGCACTATCACACTCCCATGCAGAATAAAACAAATTATAAACTTGTGGCAGGAAGTAAGAAGAGCAATGTATGCCCCTCCCATCCAAAGGCAAATTAGATGTTCATCAAATATTACAGGGCTGCTGCTAGTAAGAGATGGTAGGAGCAACAATAGTAGTAATGATACAGAGACCTTCAGGCCTAGAGGAAGAGATATGAAGGACAATTAGAGAAGTAAATTATATAAATATAAAGTAGTCAAAATTAAACCATTAAGAATAGCACCCACCCATGCAAAGAGAAGAGTGGTGCAAAAGGAAAAAAGAGCAATAAGACTTGAAGCTTTCTTCCTTAGGTTCTTAAGAGCAGCAGGAAGCACTATAGGCGCAGCGTCAGTGACGCTGACAGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAGCAGCAAAACAATTTGCTGAGAGCTATTGAGGCGCAACAGCATCTGTTGCAACTCACAGTCTAAGGCATCAAGCAGCTCCAGGCAAAAGTCCTGGCTTTAGAAAGATACCTAAAAGATCAACAGCTCCTAAGGATTTAAAGTTGCTCTGGAAAACTCATTTGCACCACTAATGTGCCCTGGAATATTAGTTGGAGCCCTAGATGGAATAGATCTCTAGATAAGATTTAGACTAACATGACCTAGAAGCAGTAAGAAAAAGAAATTGACAATTACACAGACATAATATATAACTTAATTGAACAATCACAGAACCAACAAGAACAGAATGAACAAGACTTATTGGCATTAGATAAGTAGGCAAGTTTGTAAAATTAGTTTGACATTACACAGTAGCTATAGTATATAAAAATATTCATAATAATAGTAAGAGGCTTGATAAGTTTAAGAATAGTTTTTACTATACTGTCTATAGTGAATAAAGTTAGGCAAGGATACTCACCATTGTCATTGCAGACCCTCCTCCCAACCCAGAGAGGACCCGACAGGCCCGAAAGAACAGAAGAAAGAGGTAGAAAGAAAGACAGAGGCACATCCACGAGATTAGTGCATAGATTCTTAGCACTCATCTAGGACGACCTGCGGAGCCTGTTCCTCTTCAGTTACCACCGCTTGAAAGACTTACTCTTAATTGCGGCGAGAATTGTAGAACTTCTAGGACGCAGAAAGTAAGAAGCACTGAAGTATTAGTAGAATCTCCTGCAGTATTAGAGTCAGGAAATAAAGAATAGTGCAGTTAGCTTGCTCAACACCACAGCAATAGCAGTAGCTGAGAGGACAGATAAAATTATAGAAGTATTACAAAGAGGCTTTAGAGCTATTCTCCACATACCTACACGAATAAGACAGGGCTTAGAAAAGGCTTTGCTATAA" @@ -2381,7 +2381,7 @@ "subtype_start": 8376, "subtype_end": 8469, "orientation": "forward", - "distance": 0.6866666666666661, + "distance": 0.5255102040816324, "protein": "RPSSQPREDPTGPKEQKKEVERKTEAHPRD", "aminoacids": "RPSSQPREDPTGPKEQKKEVERKTEAHPRD*", "nucleotides": "AGACCCTCCTCCCAACCCAGAGAGGACCCGACAGGCCCGAAAGAACAGAAGAAAGAGGTAGAAAGAAAGACAGAGGCACATCCACGAGATTAG" @@ -2393,7 +2393,7 @@ "subtype_start": 8377, "subtype_end": 8653, "orientation": "forward", - "distance": 1.3065934065934066, + "distance": 0.6781884553958476, "protein": "ILSTHLGRPAEPVPLQLPPLERLTLNCGENCRTSRTQKVRSTEVLVESPAVLESGNKE", "aminoacids": "DPPPNPERTRQARKNRRKR*KERQRHIHEISA*ILSTHLGRPAEPVPLQLPPLERLTLNCGENCRTSRTQKVRSTEVLVESPAVLESGNKE*", "nucleotides": "GACCCTCCTCCCAACCCAGAGAGGACCCGACAGGCCCGAAAGAACAGAAGAAAGAGGTAGAAAGAAAGACAGAGGCACATCCACGAGATTAGTGCATAGATTCTTAGCACTCATCTAGGACGACCTGCGGAGCCTGTTCCTCTTCAGTTACCACCGCTTGAAAGACTTACTCTTAATTGCGGCGAGAATTGTAGAACTTCTAGGACGCAGAAAGTAAGAAGCACTGAAGTATTAGTAGAATCTCCTGCAGTATTAGAGTCAGGAAATAAAGAATAG" @@ -2405,7 +2405,7 @@ "subtype_start": 8796, "subtype_end": 9417, "orientation": "forward", - "distance": 1.6390243902439028, + "distance": 0.7255452386093717, "protein": "MTYKRALDISHFLKEKGGLDGLIYSKRRQDILDLWLYNTQGYFPDWQNYTPGPGVRFPLCFR", "aminoacids": "MTYKRALDISHFLKEKGGLDGLIYSKRRQDILDLWLYNTQGYFPDWQNYTPGPGVRFPLCFR*CFKLVPVDPDKVEEASVRENNCLLSPENLHRMEDEHREVLQWRFDSRLAFHHIARELHPEYYKDC*", "nucleotides": "ATGACTTACAAGAGAGCTCTAGATATTAGCCACTTTTTAAAAGAAAAAGGGGGACTGGATGGGCTAATTTACTCCAAAAGAAGACAAGACATCCTTGATCTGTGGCTCTACAACACACAAGGCTACTTCCCTGACTGGCAGAACTACACACCAGGGCCAGGAGTCAGATTTCCACTGTGTTTTAGATAGTGCTTCAAGCTAGTACCAGTTGATCCAGATAAAGTAGAAGAGGCCAGTGTAAGAGAGAACAACTGCTTGTTAAGCCCCGAAAACCTGCATAGAATGGAGGACGAACACAGAGAAGTATTGCAGTGGAGGTTTGACAGCCGCCTAGCATTTCATCACATAGCCCGAGAGCTGCATCCGGAGTATTACAAGGACTGCTGA" @@ -2419,7 +2419,7 @@ "subtype_start": 789, "subtype_end": 2292, "orientation": "forward", - "distance": 0.20799999999999996, + "distance": 0.25120772946859904, "protein": "MGARASVLSGGELDKWEKIRLRPGGKKRYKLKHIVWASRELERFAVNPGLLETTEGCKQILEQLQPSLPTGSEELRSLFNTVATLYCVHKRIEVQDTKEALEKIEEEQNKSKKKAQQAVADTGSTSQVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPVAPGQMREPRGSDIAGTTSTLQEQIAWMTSNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYKVLRAEQASQDVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSNIIMMQRGNFRNQRKTVKCFNCGKEGHIARNCRAPRKKGCWKCGREGHQMKDCTERQANFLGKIWPSSKGRPGNFLQSRPEPTAPPEESFRFGEETATPPQKQEPVDKEVYPLASLKSLFGNDPSSQ", "aminoacids": "MGARASVLSGGELDKWEKIRLRPGGKKRYKLKHIVWASRELERFAVNPGLLETTEGCKQILEQLQPSLPTGSEELRSLFNTVATLYCVHKRIEVQDTKEALEKIEEEQNKSKKKAQQAVADTGSTSQVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPVAPGQMREPRGSDIAGTTSTLQEQIAWMTSNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYKVLRAEQASQDVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSNIIMMQRGNFRNQRKTVKCFNCGKEGHIARNCRAPRKKGCWKCGREGHQMKDCTERQANFLGKIWPSSKGRPGNFLQSRPEPTAPPEESFRFGEETATPPQKQEPVDKEVYPLASLKSLFGNDPSSQ*", "nucleotides": "ATGGGTGCGAGAGCGTCTGTATTAAGCGGGGGAGAATTAGATAAATGGGAAAAAATTCGGTTAAGGCCAGGAGGAAAGAAAAGATATAAATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTTAACCCCGGCCTTTTAGAAACAACAGAGGGATGTAAACAAATACTGGAACAGCTGCAACCATCCCTTCCGACAGGATCAGAAGAACTTAGATCATTATTTAATACAGTAGCAACCCTCTATTGTGTGCATAAGAGAATAGAGGTACAAGACACCAAGGAAGCCTTAGAAAAGATAGAAGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAGGCAGTAGCTGACACAGGAAGTACCAGCCAGGTCAGCCAAAATTACCCGATAGTGCAGAACCTCCAGGGGCAAATGGTACATCAGGCCATATCGCCTAGAACTTTAAATGCATGGGTGAAAGTAGTAGAAGAGAAGGCCTTTAGCCCAGAGGTAATACCCATGTTTTCAGCATTATCGGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATCAATGAGGAGGCTGCAGAATGGGATAGAGTGCATCCAGTGCATGCAGGGCCTGTTGCACCAGGCCAAATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAAGAACAAATAGCATGGATGACAAGTAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCCTGGGATTAAATAAGATAGTAAGAATGTATAGCCCTACCAGCATTTTGGACATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAAAGTCCTAAGAGCCGAGCAAGCATCGCAGGATGTAAAAAATTGGATGACAGAAACCTTATTGGTCCAAAATGCAAACCCAGATTGTAAGACTATTTTAAAAGCATTGGGACCAGCAGCAACACTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGGGGACCCGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAACAAATTCAAATATCATAATGATGCAGAGAGGCAATTTTAGGAACCAAAGAAAGACTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAGGGAAGGACACCAAATGAAAGATTGTACTGAGAGACAGGCTAATTTTTTAGGGAAGATCTGGCCTTCCTCCAAGGGAAGGCCAGGGAACTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAGGAGAGCTTCAGGTTTGGGGAGGAGACAGCAACTCCTCCTCAGAAGCAGGAGCCGGTGGACAAGGAAGTGTATCCTTTAGCTTCCCTCAAATCACTCTTTGGCAACGACCCCTCGTCACAATAA" @@ -2431,7 +2431,7 @@ "subtype_start": 2084, "subtype_end": 5096, "orientation": "forward", - "distance": 0.13160518444665992, + "distance": 0.17509882471546434, "protein": "FFREDLAFLQGKARELSSEQTRANSPTRGELQVWGGDSNSSSEAGAGGQGSVSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVQLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSITVLDVGDAYFSIPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMIKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLKWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPDKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLKGAKALTEVIQLTEEAELELAENREILKEPVHGVYYDPSKDLIAELQKQGQGQWTYQIYQEPFKNLKTGKYARTRGTHTNDVKQLTEAVQKITTESIVIWGKTPRFKLPIQKETWDTWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTSRGRQKVVSLTDTTNQKTELQAICLALQDSGLEVNIVTDSQYALGIIQAQPDRSESEIVNQIIEQLIKKERVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEATHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKAIHTDNGTNFTSATVKAACWWAGIKQECGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDNRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED", "aminoacids": "FFREDLAFLQGKARELSSEQTRANSPTRGELQVWGGDSNSSSEAGAGGQGSVSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVQLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSITVLDVGDAYFSIPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMIKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLKWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPDKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLKGAKALTEVIQLTEEAELELAENREILKEPVHGVYYDPSKDLIAELQKQGQGQWTYQIYQEPFKNLKTGKYARTRGTHTNDVKQLTEAVQKITTESIVIWGKTPRFKLPIQKETWDTWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTSRGRQKVVSLTDTTNQKTELQAICLALQDSGLEVNIVTDSQYALGIIQAQPDRSESEIVNQIIEQLIKKERVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIDKAQEEHEKYHNNWRAMASDFNLPPVVAKEIVASCDKCQLKGEATHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKAIHTDNGTNFTSATVKAACWWAGIKQECGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDNRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*", "nucleotides": "TTTTTTAGGGAAGATCTGGCCTTCCTCCAAGGGAAGGCCAGGGAACTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAGGAGAGCTTCAGGTTTGGGGAGGAGACAGCAACTCCTCCTCAGAAGCAGGAGCCGGTGGACAAGGAAGTGTATCCTTTAGCTTCCCTCAAATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAGGAGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGACACAGTATTAGAAGAAATGAGTTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACCTATAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGCAGAAATTTGTTGACTCAGATTGGTTGTACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTACAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAAGAAGGGAAGATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGGGAACTTAATAAAAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACACCCCGCAGGGTTAAAAAAGAAGAAATCAATAACAGTACTGGATGTGGGTGATGCATATTTTTCAATTCCCTTAGATAAAGACTTCAGGAAGTATACTGCATTTACCATACCTAGTATAAATAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGATAAAAATCTTAGAGCCTTTTAGAAAGCAAAATCCAGACATAGTTATCTATCAATACATGGATGACTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAACTGAGACAACACTTGTTGAAGTGGGGATTGACCACACCAGATAAAAAACATCAGAAAGAACCCCCATTCCTGTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAGACAAAGATAGCTGGACTGTCAATGACATACAGAAGCTAGTGGGAAAATTGAATTGGGCAAGTCAGATTTATGCAGGGATTAAAGTGAGACAATTATGTAAACTCCTTAAGGGAGCCAAAGCGCTAACAGAAGTGATACAACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTCTAAAAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAGTTACAGAAGCAGGGGCAAGGCCAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAGTATGCAAGAACGAGGGGTACCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTGATATGGGGAAAGACCCCTAGATTTAAACTACCCATACAGAAAGAAACATGGGATACCTGGTGGACAGAATATTGGCAAGCCACCTGGATTCCCGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAATTAGAAAAAGAACCTATTGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAGCAGAGGAAGACAAAAGGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAACTGCAAGCAATTTGTCTAGCATTGCAGGATTCAGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCACTAGGAATAATTCAAGCACAACCAGATAGGAGTGAATCAGAGATAGTCAATCAAATAATAGAGCAGTTAATAAAAAAGGAAAGGGTCTACCTTGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTGCTGGAATCAGGAAAGTCCTATTTTTGGATGGAATAGATAAGGCCCAAGAGGAGCATGAGAAATATCACAATAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCCAGTTGTGATAAATGCCAGCTAAAGGGAGAAGCCACGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAATTAGATTGTACACATTTAGAAGGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAAGAAACAGCATACTTCCTCTTAAAATTAGCAGGAAGGTGGCCAGTGAAAGCAATACATACAGACAATGGAACCAATTTCACCAGTGCTACGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATGTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAAGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTCCAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACAGACCTACAAACTAAAGAATTACAGAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAACAGAGATCCACTTTGGAAAGGACCAGCAAAACTTCTTTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGACATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG" @@ -2443,7 +2443,7 @@ "subtype_start": 5040, "subtype_end": 5619, "orientation": "forward", - "distance": 0.3041666666666665, + "distance": 0.3291253381424706, "protein": "MENRWQVMIVWQVDRMRISTWKSLVKHHMYISKKAQGWFYRHHYENPHPRISSEVHIPLGDARLVITTYWGLHTGERDWHLGQGVSIECRERKYSTQVTPDLADQLIHLYYFDCFAESAIREAILGHRVSPRCEYQAGHNKVGSLQYLALTALVTPKKTKPPLPSVTKLTEDRWNKPQKTKGHRGSQTMNGH", "aminoacids": "MENRWQVMIVWQVDRMRISTWKSLVKHHMYISKKAQGWFYRHHYENPHPRISSEVHIPLGDARLVITTYWGLHTGERDWHLGQGVSIECRERKYSTQVTPDLADQLIHLYYFDCFAESAIREAILGHRVSPRCEYQAGHNKVGSLQYLALTALVTPKKTKPPLPSVTKLTEDRWNKPQKTKGHRGSQTMNGH*", "nucleotides": "ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGCACATGGAAAAGTTTAGTAAAACACCATATGTACATTTCAAAGAAAGCCCAGGGATGGTTTTATAGACATCACTATGAAAATCCTCATCCAAGAATAAGTTCAGAAGTACACATCCCGCTAGGGGATGCTAGATTGGTAATAACAACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCATTTGGGTCAAGGAGTCTCCATAGAATGCAGGGAAAGGAAATATAGCACACAAGTAACCCCTGACCTAGCAGACCAACTAATTCACCTGTATTATTTTGATTGTTTTGCAGAATCTGCTATAAGAGAGGCCATATTAGGACATAGAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGATCTCTACAGTACTTGGCACTAACAGCATTAGTAACACCAAAAAAGACAAAGCCACCTTTGCCTAGTGTGACAAAACTGACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCAAACAATGAATGGACACTAG" @@ -2455,7 +2455,7 @@ "subtype_start": 5558, "subtype_end": 5850, "orientation": "forward", - "distance": 0.4038461538461544, + "distance": 0.39444027047332864, "protein": "MEQAPEDQGPQREPNNEWTLELLEELKREAVRHFPRTWLHGLGQHIYETYGDTWTGVEALIRILQQLLFIHFRIGCQHSRIGITRQRRARNGASRS", "aminoacids": "MEQAPEDQGPQREPNNEWTLELLEELKREAVRHFPRTWLHGLGQHIYETYGDTWTGVEALIRILQQLLFIHFRIGCQHSRIGITRQRRARNGASRS*I", "nucleotides": "ATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCAAACAATGAATGGACACTAGAGCTCTTAGAAGAGCTTAAGAGAGAAGCTGTTAGACATTTTCCTAGGACATGGCTTCATGGCTTGGGACAACATATCTATGAAACTTATGGGGATACTTGGACAGGAGTGGAAGCCTTAATAAGAATTCTGCAACAACTGCTGTTTATTCATTTCAGAATTGGGTGCCAACATAGCAGAATAGGCATCACTCGACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGATT" @@ -2467,7 +2467,7 @@ "subtype_start": 5830, "subtype_end": 6045, "orientation": "forward", - "distance": 0.41666666666666674, + "distance": 0.40192926045016075, "protein": "MEPVDPRLEPWKHPGSQPKTPCTKCYCKKCCFHCQVCFITKGLGISYGRKKRRQRRRPPQDSQTHQVPLPKQ", "aminoacids": "MEPVDPRLEPWKHPGSQPKTPCTKCYCKKCCFHCQVCFITKGLGISYGRKKRRQRRRPPQDSQTHQVPLPKQ*", "nucleotides": "ATGGAGCCAGTAGATCCTAGATTAGAGCCCTGGAAGCATCCAGGAAGTCAGCCTAAGACTCCTTGTACCAAATGCTATTGTAAAAAATGCTGCTTTCATTGCCAAGTTTGTTTCATAACAAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGACCTCCTCAAGACAGTCAGACTCATCAAGTACCTCTACCAAAGCAGTGA" @@ -2479,7 +2479,7 @@ "subtype_start": 5969, "subtype_end": 6045, "orientation": "forward", - "distance": 0.6346153846153846, + "distance": 0.5058246474555488, "protein": "MAGRSGDSDEDLLKTVRLIKYLYQSSE", "aminoacids": "MAGRSGDSDEDLLKTVRLIKYLYQSSE", "nucleotides": "ATGGCAGGAAGAAGCGGAGACAGCGACGAAGACCTCCTCAAGACAGTCAGACTCATCAAGTACCTCTACCAAAGCAGTGAG" @@ -2491,7 +2491,7 @@ "subtype_start": 6061, "subtype_end": 6310, "orientation": "forward", - "distance": 0.7682926829268295, + "distance": 0.5534082923401267, "protein": "MQSLYILTIVALVVAAILAIVVWAIVLIEYKKILKQRRIDRLIDRIIDRAEDSGNESEGDQEELSALVEMGHHAPWNVDDL", "aminoacids": "MQSLYILTIVALVVAAILAIVVWAIVLIEYKKILKQRRIDRLIDRIIDRAEDSGNESEGDQEELSALVEMGHHAPWNVDDL*", "nucleotides": "ATGCAATCCTTATATATATTAACAATAGTAGCATTAGTAGTAGCAGCAATATTAGCAATAGTTGTGTGGGCCATAGTACTCATAGAATATAAGAAAATATTAAAACAAAGGAGAATAGATAGGTTAATTGATAGAATAATAGATAGGGCAGAAGACAGTGGCAATGAGAGTGAAGGAGATCAAGAGGAGTTATCAGCACTTGTGGAGATGGGGCATCATGCTCCTTGGAATGTTGATGATCTATAG" @@ -2503,7 +2503,7 @@ "subtype_start": 6224, "subtype_end": 8795, "orientation": "forward", - "distance": 0.6280373831775696, + "distance": 0.5032200089860714, "protein": "MRVKEIKRSYQHLWRWGIMLLGMLMIYSTADQWWVTVYYGVPVWREANTTLFCASDAKAYSTEAHNVWATHACVPTDPNPQEIVIGNVTEDFNMWKNNMVDQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDIRNSTVTSNTTTWGEMTNCTFNITTSIKDKMKKEAALFYKIDLVEIDEEKNNSSTRYRLINCNTSAITQACPKVSFEPIPIHFCAPAGFAILKCNNKKFSGKGPCTNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSDNITDNTKNIIVQLKEAIQIFCIRPNNNTRKSINIGPGRAFYTTGDIIGDIRQAHCNISGNWNNTLKQIATQLGKQLNQTQQIIFNSSAGGDPEIVTHSFNCGGEFFYCNSSSLFNSTWTKNGTGSWQSNDTQNGNITLQCRIKQIINLWQGVGKAMYAPPISGQINCTSNITGLVLTRDGGKVINETETFRPGGGNMKDNWRSELYKYKVVRIEPLGIAPTKAKRRVVQREKRAVGLGAMFLGFLGAAGSTMGAASIALTEQARRVLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQLLGLWGCSGKLICTTTVPWNRSWGGHNKNLDDIWGNMTWMEWEKEIDNYTSLIYTLITESHSQQEKNEQELLALDKWASLWNWFDISQWLWYIKIFIMIVGGLVGLRIVFAVLSIVNKVRQGYSPLSFQTLLPAPRGADRPEGIEEGGGERDKGRSGRLVNGFLALIWDDLRSLCLFSYHRLSDLLLIVIRIVELLGRRGWEALKYWWNLLQYWSQELKNSAVSLLNTTAIVVAEGTDRIIEILQRIGRAFLHIPRRIRQGLERALL", "aminoacids": "MRVKEIKRSYQHLWRWGIMLLGMLMIYSTADQWWVTVYYGVPVWREANTTLFCASDAKAYSTEAHNVWATHACVPTDPNPQEIVIGNVTEDFNMWKNNMVDQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDIRNSTVTSNTTTWGEMTNCTFNITTSIKDKMKKEAALFYKIDLVEIDEEKNNSSTRYRLINCNTSAITQACPKVSFEPIPIHFCAPAGFAILKCNNKKFSGKGPCTNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSDNITDNTKNIIVQLKEAIQIFCIRPNNNTRKSINIGPGRAFYTTGDIIGDIRQAHCNISGNWNNTLKQIATQLGKQLNQTQQIIFNSSAGGDPEIVTHSFNCGGEFFYCNSSSLFNSTWTKNGTGSWQSNDTQNGNITLQCRIKQIINLWQGVGKAMYAPPISGQINCTSNITGLVLTRDGGKVINETETFRPGGGNMKDNWRSELYKYKVVRIEPLGIAPTKAKRRVVQREKRAVGLGAMFLGFLGAAGSTMGAASIALTEQARRVLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQLLGLWGCSGKLICTTTVPWNRSWGGHNKNLDDIWGNMTWMEWEKEIDNYTSLIYTLITESHSQQEKNEQELLALDKWASLWNWFDISQWLWYIKIFIMIVGGLVGLRIVFAVLSIVNKVRQGYSPLSFQTLLPAPRGADRPEGIEEGGGERDKGRSGRLVNGFLALIWDDLRSLCLFSYHRLSDLLLIVIRIVELLGRRGWEALKYWWNLLQYWSQELKNSAVSLLNTTAIVVAEGTDRIIEILQRIGRAFLHIPRRIRQGLERALL*", "nucleotides": "ATGAGAGTGAAGGAGATCAAGAGGAGTTATCAGCACTTGTGGAGATGGGGCATCATGCTCCTTGGAATGTTGATGATCTATAGTACTGCAGACCAGTGGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAGAGAAGCAAACACCACTCTATTTTGTGCATCAGATGCTAAAGCATATAGTACAGAGGCACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAATAGTAATAGGAAATGTAACAGAAGATTTTAACATGTGGAAGAATAACATGGTAGATCAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGTCTAAAGCCATGTGTGAAACTAACCCCACTCTGTGTTACTTTAAATTGTACTGATATTAGGAATAGTACCGTTACTTCTAATACTACTACTTGGGGAGAAATGACAAACTGCACTTTCAATATCACCACAAGCATAAAGGATAAGATGAAAAAAGAAGCGGCACTTTTTTATAAAATTGATTTAGTAGAAATAGATGAAGAGAAAAATAACAGTAGTACCAGATATAGGTTGATAAATTGTAACACCTCAGCCATTACACAAGCCTGCCCAAAGGTATCCTTTGAGCCAATTCCCATACATTTTTGTGCCCCGGCTGGTTTTGCAATTCTAAAGTGTAATAATAAGAAGTTCAGTGGAAAGGGACCATGTACAAATGTCAGCACAGTGCAATGTACACATGGAATTAAGCCAGTAGTATCAACTCAACTGCTGTTAAATGGCAGTCTAGCAGAAGAAGAGGTAATGATTAGATCTGACAATATCACAGACAATACTAAAAACATAATAGTACAGTTGAAGGAAGCCATACAAATTTTCTGTATAAGACCCAACAACAATACAAGAAAAAGTATAAATATAGGACCAGGGAGAGCATTTTACACAACAGGAGATATAATAGGAGACATAAGGCAAGCACATTGTAACATTAGTGGAAATTGGAATAACACTTTAAAACAGATAGCTACACAATTAGGAAAACAACTGAATCAAACACAACAAATAATCTTTAATTCATCCGCAGGAGGGGACCCAGAGATTGTAACACACAGTTTTAATTGTGGAGGGGAATTCTTCTATTGTAATTCATCATCACTGTTTAATAGTACCTGGACTAAAAATGGTACTGGTAGTTGGCAGTCTAATGATACTCAGAATGGTAATATCACACTCCAATGCAGAATAAAACAAATTATAAACCTGTGGCAGGGAGTAGGAAAAGCAATGTATGCCCCTCCCATCAGTGGACAAATTAACTGTACATCAAATATTACAGGGCTGGTTTTAACAAGAGATGGGGGGAAGGTGATTAATGAAACTGAGACCTTTAGACCTGGAGGAGGAAATATGAAGGATAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAGAATTGAACCATTAGGAATAGCACCCACCAAGGCAAAAAGAAGAGTGGTGCAAAGAGAGAAAAGAGCAGTAGGACTGGGAGCTATGTTCCTTGGGTTCTTGGGAGCAGCCGGAAGCACTATGGGCGCAGCGTCAATAGCGCTGACGGAACAGGCCAGACGAGTATTGTCTGGTATAGTGCAACAGCAGAACAATTTGCTGAGGGCTATTGAGGCGCAACAGCATTTGTTGCAACTCACAGTCTGGGGCATTAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTACAGGATCAACAGCTCCTAGGACTTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTACTGTGCCTTGGAATCGTAGTTGGGGTGGGCATAACAAAAATCTAGATGACATTTGGGGTAACATGACCTGGATGGAGTGGGAAAAAGAAATTGACAATTACACAAGCTTAATATACACCTTAATTACAGAATCACATTCCCAACAAGAAAAGAATGAACAAGAATTATTGGCATTAGATAAATGGGCAAGTTTGTGGAATTGGTTTGACATATCACAATGGCTGTGGTATATAAAAATATTCATAATGATAGTAGGAGGCTTGGTAGGTTTAAGAATAGTTTTTGCTGTACTTTCTATAGTGAATAAAGTTAGGCAGGGATACTCACCATTATCATTTCAGACCCTCCTCCCAGCTCCGAGGGGAGCCGACAGGCCCGAAGGAATAGAAGAAGGAGGTGGAGAGAGAGACAAAGGCAGATCCGGTCGATTAGTGAACGGATTCTTAGCACTTATCTGGGACGATCTACGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGCGACTTACTCTTGATTGTGATCAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAATATTGGTGGAATCTCCTGCAGTACTGGAGTCAGGAACTAAAGAATAGTGCTGTCAGCTTGCTCAACACCACAGCTATAGTAGTAGCTGAAGGGACAGATAGGATAATAGAAATATTACAAAGAATTGGTAGAGCTTTTCTCCACATACCTAGGAGAATAAGACAGGGCTTAGAAAGGGCTTTGCTATAA" @@ -2515,7 +2515,7 @@ "subtype_start": 8376, "subtype_end": 8469, "orientation": "forward", - "distance": 0.6000000000000001, + "distance": 0.4918032786885247, "protein": "RPSSQLRGEPTGPKE", "aminoacids": "RPSSQLRGEPTGPKE*KKEVERETKADPVD**", "nucleotides": "AGACCCTCCTCCCAGCTCCGAGGGGAGCCGACAGGCCCGAAGGAATAGAAGAAGGAGGTGGAGAGAGAGACAAAGGCAGATCCGGTCGATTAGTGA" @@ -2527,7 +2527,7 @@ "subtype_start": 8377, "subtype_end": 8653, "orientation": "forward", - "distance": 0.29670329670329676, + "distance": 0.32366339007432277, "protein": "DPPPSSEGSRQARRNRRRRWRERQRQIRSISERILSTYLGRSTEPVPLQLPPLERLTLDCDQDCGTSGTQGVGSPQILVESPAVLESGTKE", "aminoacids": "DPPPSSEGSRQARRNRRRRWRERQRQIRSISERILSTYLGRSTEPVPLQLPPLERLTLDCDQDCGTSGTQGVGSPQILVESPAVLESGTKE*", "nucleotides": "GACCCTCCTCCCAGCTCCGAGGGGAGCCGACAGGCCCGAAGGAATAGAAGAAGGAGGTGGAGAGAGAGACAAAGGCAGATCCGGTCGATTAGTGAACGGATTCTTAGCACTTATCTGGGACGATCTACGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGCGACTTACTCTTGATTGTGATCAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAATATTGGTGGAATCTCCTGCAGTACTGGAGTCAGGAACTAAAGAATAG" @@ -2539,7 +2539,7 @@ "subtype_start": 8796, "subtype_end": 9417, "orientation": "forward", - "distance": 0.5162601626016183, + "distance": 0.4543503148254113, "protein": "MGGKWSKSSRVGWNAVRERMRRAQPTADRERAEPAADGVGAASRDLEKYGALTSRNTAATNADCAWLEAQEEEDEVGFPVRPQVPLRPMTYKAALDLSHFLKEKGGLEGLVYSQKRQDILDLWIYHTQGYFPDWQNYTPGPGIRYPLTFGWCFKLVPLEPDQVEEANEGENNSLLHPLSQHGMDDPEKEVLVWRFDSRLAFHHMAREKHPEFYKDC", "aminoacids": "MGGKWSKSSRVGWNAVRERMRRAQPTADRERAEPAADGVGAASRDLEKYGALTSRNTAATNADCAWLEAQEEEDEVGFPVRPQVPLRPMTYKAALDLSHFLKEKGGLEGLVYSQKRQDILDLWIYHTQGYFPDWQNYTPGPGIRYPLTFGWCFKLVPLEPDQVEEANEGENNSLLHPLSQHGMDDPEKEVLVWRFDSRLAFHHMAREKHPEFYKDC*", "nucleotides": "ATGGGTGGCAAGTGGTCAAAAAGTAGTAGGGTTGGATGGAATGCAGTGAGGGAAAGAATGAGACGAGCTCAGCCAACAGCAGATAGGGAACGAGCTGAGCCAGCAGCAGATGGGGTGGGAGCAGCATCTAGAGACCTGGAAAAATATGGAGCACTTACAAGTAGGAATACAGCAGCTACTAATGCTGATTGTGCCTGGCTAGAAGCACAAGAGGAGGAGGATGAGGTGGGTTTTCCAGTCAGACCTCAGGTACCTTTAAGACCCATGACTTATAAAGCAGCTCTAGATCTGAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAGTTTACTCCCAAAAAAGGCAAGATATCCTTGATCTGTGGATCTACCACACACAAGGCTATTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGATCAGATATCCCCTGACCTTTGGATGGTGCTTCAAGCTAGTACCACTTGAGCCAGATCAGGTAGAAGAGGCCAATGAAGGAGAGAACAACAGCCTGTTACACCCTCTGAGCCAGCATGGGATGGATGACCCGGAGAAAGAAGTGCTAGTGTGGAGGTTTGACAGCCGCCTCGCATTTCATCACATGGCCCGAGAGAAGCATCCGGAGTTCTACAAAGACTGCTGA" @@ -2553,7 +2553,7 @@ "subtype_start": 789, "subtype_end": 2292, "orientation": "forward", - "distance": 0.2571999999999999, + "distance": 0.2932056543547651, "protein": "MGARASILSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWTTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSANVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE", "aminoacids": "MGARASILSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWTTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSANVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE*R*", "nucleotides": "ATGGGTGCGAGAGCGTCAATATTAAGCGGGGGAAAATTAGATGCATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATTTAGTATGGGCAAGCAGGGAGCTAGAACGATTTGCCGTTAACCCTGGCCTGTTAGAAACATCAGAGGGATGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATTTAATGCAGTAGCAGTCCTCTATTGTGTACATCAAAGGATACAGGTACAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGTAGCAGCAGCTGACACTGACACAGGAAACAGCAGCCAAAATTACCCCATAGTGCAGAACCTCCAGGGGCAAATGGTACATCAGCCCCTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAAAAGGCCTTCAGCCCAGAAGTCATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGACGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCTTGGGATTAAATAAAATAGTAAGGATGTATAGCCCTACCAGTATTCTGGATATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAGAACTTTAAGAGCTGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATTCGAATCCAGATTGTAAGACTATTTTAAAAGCATTAGGACCAGCAGCAACACTAGAGGAAATGATGACAGCATGTCAAGGAGTGGGGGGACCAGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAAATTCAGCTAATGTAATGATGCAGAGAGGCAATTTTAGAAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACATCAAATGAAAGACTGTACAGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAG" @@ -2565,7 +2565,7 @@ "subtype_start": 2084, "subtype_end": 5096, "orientation": "forward", - "distance": 0.14755732801595212, + "distance": 0.1922427454342348, "protein": "FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSTGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED", "aminoacids": "FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSTGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*", "nucleotides": "TTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAGGGGGGCAATTTAAAGAAGCTTTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACCCATAGAAATCTGTGGACACAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGCTTGGTTGTACCTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTCAATAAGAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAATTCCCTTAGATAAAGAATTCAGGAAGTATACTGCATTTACCATACCTAGTACAAATAATGAGACACCAGGGATTAGGTATGAGTACAATGTGCTGCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGCAAAATCCAGATATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAACTGAGACAACATCTGTTAAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAGTGGACAGTACAGCCTATAATACTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTACGCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAGGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTTTAAGAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGCAATGGACAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTACAAAAGATAGCCACAGAAAGCATAGTAATATGGGGAAAAACTCCTAAATTTAGACTACCTATACAAAAAGAAACATGGGAGACATGGTGGGCAGAGTACTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAATTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACTAAATTAGGCAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAGGTTATCTCCCTAACGGACACAACAAATCAAAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATCAGAAGTAAACATAGTAACAGACTCACAATATACATTAGGAATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAATCAGATAATAGAGCAGTTAATAAAAAAGGAAAAAGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGACAAACTAGTCAGTACTGGAGTCAGGAGAGTACTATTTCTAGATGGAATAGATAAGGCCCAAGAAGACCATGAGAAATATCACAGTAATTGGAGAGCAATGGCTGGTGATTTTAATATACCCCCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCAAAAAGGAGAGGCCATGCATGGACAAGTAGATTGTAGTCCAGGAATATGGCAACTAGATTGTACACATCTAGAAGGGAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTCTCCTGAAACTAGCAGGGAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTAATGTGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCCATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTATAGTGCAGGGGAAAGAATAGTAGATATAATAGCAACAGACCTACAAACTAAAGAATTACAGAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGGAGAAAAGCAAAAATCATTAGGGATTATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG" @@ -2577,7 +2577,7 @@ "subtype_start": 5040, "subtype_end": 5619, "orientation": "forward", - "distance": 0.35416666666666674, + "distance": 0.36355859709153127, "protein": "MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH", "aminoacids": "MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH*", "nucleotides": "ATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATGTTTCAAAGAAAACTAAAGGATGGTTTTATAGACATCACTATGAAAGCACTCATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTGGTAGTAACAACATATTGGGGCCTGAATACAGGAGAAAGAGAATGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGAAAAAGGAAATATAGCACACAAGTTGACCCTAACCTAGCAGACCAACTAATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACATATAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGCTCTCTACAATACTTGGCACTAAAAGCATTAACAACACCAAAGAGAAGAAAGCCACCTTTACCTAGTGTTAGGAAACTGACAGAGGATAGATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAG" @@ -2589,7 +2589,7 @@ "subtype_start": 5558, "subtype_end": 5850, "orientation": "forward", - "distance": 0.4038461538461544, + "distance": 0.39444027047332864, "protein": "MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS", "aminoacids": "MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS*T", "nucleotides": "ATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAGAGCTTTTAGAGGAACTTAAGAATGAAGCGGTTAGACATTTTCCTAGGCCGTGGCTCCATGGCTTAGGACAACATATCTATGAAACTTATGGGGACACTTGGACAGGAGTGGAGGCCATAATAAGAACCCTGCAACAACTGCTGTTTATTCATTTCAGACTTGGGTGTCGACATAGCAGAATAGGCATTGTGCCACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACT" @@ -2601,7 +2601,7 @@ "subtype_start": 5830, "subtype_end": 6045, "orientation": "forward", - "distance": 0.29166666666666674, + "distance": 0.31992687385740404, "protein": "MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ", "aminoacids": "MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ*", "nucleotides": "ATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCACCCAGGAAGTCAGCCTAAAACTCCTTGTACTAACTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAAAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGTAA" @@ -2613,7 +2613,7 @@ "subtype_start": 5969, "subtype_end": 6045, "orientation": "forward", - "distance": 0.5769230769230769, + "distance": 0.48200514138817474, "protein": "MAGRSGDSDEELLKAVRLIKILYQSS", "aminoacids": "MAGRSGDSDEELLKAVRLIKILYQSS", "nucleotides": "ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGT" @@ -2625,7 +2625,7 @@ "subtype_start": 6061, "subtype_end": 6310, "orientation": "forward", - "distance": 0.6865853658536587, + "distance": 0.5254806794847863, "protein": "MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAKDSGNESEGDQEELSALMEMGHHAPGDVDDL", "aminoacids": "MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAKDSGNESEGDQEELSALMEMGHHAPGDVDDL*", "nucleotides": "ATGCAACCTCTGCACATAGCAGCAATAGTAGGATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGACCATAGTGTTAATAGAATATAGGAAAATATTAAGACAAAAAAGGATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAAAAGACAGTGGCAATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAG" @@ -2637,7 +2637,7 @@ "subtype_start": 6224, "subtype_end": 8795, "orientation": "forward", - "distance": 0.49135514018691584, + "distance": 0.4421225244922844, "protein": "MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEAHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRNKMQKEYALFYKLDVVPIDNDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYENKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSETETFRPGGGDMKDNWRSELYKYKVEKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL", "aminoacids": "MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEAHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRNKMQKEYALFYKLDVVPIDNDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYENKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSETETFRPGGGDMKDNWRSELYKYKVEKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL*", "nucleotides": "ATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTGACAGTCTATTATGGGGTACCTGTATGGAAAGAAGCAAACACCACTCTATTTTGTGCATCGGATGCTAAAGCATATACCACAGAGGCACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGGATTGGAAAATGTGACAGAAAATTTTAACATGTGGAAAAATAACATGGTAGAACAGATGCATGAGGATGTAATCAATTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCACTAATCTGAATGTTACTAATACCAATAGCAGTAGTGAGGAGGGAAAGATGGCGGAAGAAATGAGAAACTGCTCTTTCAATATCACCACAAAAATAAGAAATAAGATGCAGAAGGAATATGCACTTTTTTATAAACTTGATGTAGTACCAATAGATAATGATAATACAAGTTATACATTGATAAATTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCTATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAGGATAAGAAGTTCAATGGATCAGGACCATGTAAAAATGTCAGCACAGTACAATGTACACATGGAATTAAGCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTTTAGCAGAAGAAGAGGTAGTAATTAGATCTGAAAATTTCACGAACAATGCTAAAACCATAATAGTACATCTGAAGGAACCTATACAAATTAATTGTACAAGACCCAACAACAATACAATGAAAAGTATCCCTCTAGGACCAGGAAGAGCATTCTATGCAACAGGAGCCATAATAGGAGATATAAGACAAGCACATTGTAACCTTAGTAGAAAAGCATGGAATAATACTTTAAAACAGGTAGTTGAAAAATTAAAAGAACAATATGAGAATAAAACAATAATCTTTAATCACTCCTCAGGAGGGGACCCAGAAATTATAATGCATACTTTTAATTGTGGAGGGGAATTTTTCTATTGTAATACAACACAGCTGTTTAATAGTACTTGGAATAGTACTTGGACTGGGAATGCTACCGAATTAGATGGAAACATCACACTCCCATGCAGAATAAAACAGATTATAAACAGGTGGCAAGAAGTAGGAAAAGCAATGTATGCCCCTCCCATTAGAGGAAAAATTAGATGTTCATCAAATATTACAGGGTTACTATTAGTAAGAGATGGTGGTAACACGAGCGAGACTGAGACCTTCAGACCTGGAGGAGGAGATATGAAGGACAATTGGAGGAGTGAATTATATAAATATAAAGTAGAAAAAATTGAGCCATTAGGAGTAGCACCCACCAGGGCAAAGAGAAGAGTGGTGCAAAGAGAAAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAAGCCAGGCTGTTATTGTCTGGTATAGTGCAACAGCAAAACAATTTGCTGAGAGCTATTGAGGCGCAACAACATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTACAGGATCAACAGCGCCTGGGAATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCCTGGAATGCTAGTTGGAGTAATAAATCTCTGAATCAGATTTGGGATAACATGACCTGGATGGAGTGGGAAAGAGAAATTAACAATTACACAGACACAATATACACCTTAATTGAAAAGGCGCAGAACCAGCAGGAAAAAAATGAACAAGAATTATTGGAATTGGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAAATGGCTGTGGTACATAAAATTATTCATAATGATAGTAGGAGGATTGATAGGTTTAAGAATAGTTTTTGCTGTACTTGCTATAGTAAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGCCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAGCTTATTCAATGTCACAGCCATCGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAAGAGCTTGTAGAGCTCTTCTCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCATTGTTATAA" @@ -2649,7 +2649,7 @@ "subtype_start": 8376, "subtype_end": 8469, "orientation": "forward", - "distance": 0.28666666666666596, + "distance": 0.3161764705882347, "protein": "RPTSQPRGDPTGPKESKKKVEKETETDQFD", "aminoacids": "RPTSQPRGDPTGPKESKKKVEKETETDQFD**", "nucleotides": "AGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGA" @@ -2661,7 +2661,7 @@ "subtype_start": 8377, "subtype_end": 8653, "orientation": "forward", - "distance": 0.39560439560439553, + "distance": 0.38952607660679506, "protein": "DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVPLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE", "aminoacids": "DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVPLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE*CY*", "nucleotides": "GACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGCCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAG" @@ -2673,7 +2673,7 @@ "subtype_start": 8796, "subtype_end": 9417, "orientation": "forward", - "distance": 0.6162601626016186, + "distance": 0.49848743916874616, "protein": "MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPMSLHGMEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC", "aminoacids": "MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPMSLHGMEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC*H*", "nucleotides": "ATGGGGGGCAAGTGGTCAAAAAGTAGTGGGGGTGGATGGCCTGCTGTAAGGGAAAGAATGAGACGAACTGAGCCAGCAGCAGAAGGGGTGGGAGCAGTATCTCGAGACCTGGAAAGACATGGAGCAGTCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGCGCCTGGCTGGAAGCACAAGAAGAGGACAGTGAAGTGGGTTTTCCAGTCAGACCTCAGGTGCCTTTAAGACCAATGACTTTCAAAGGAGCTCTCGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCCCAAAAAAGACAAGATATCCTTGACCTGTGGGTCTACAACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGACCAGATATCCACTGACCTTTGGGTGGTGTTTCAAGCTAGTACCAGTGGAGCCAGAAGAGGCCAATCAAGGAGAGAACAACTGCTTGTTACACCCTATGAGCCTGCATGGGATGGAGGACCCGGAAAAAGAAGTATTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCACATGGCCCGAGAGAAGCATCCGGAGTACTACAAAGACTGCTGACATTGA" @@ -2687,7 +2687,7 @@ "subtype_start": 140, "subtype_end": 1643, "orientation": "forward", - "distance": 2.1186000000000007, + "distance": 0.77360695245746, "protein": "MVFISCGVAPSANAENIGITSGLKAFSSTTFTHAFKVLGDMA", "aminoacids": "PESESRTREVLSTQDSAC*ALWPGPPTP*HAVIISSSVAAGPNAFKIVLQSGFAFWTNKVSVIQFFTSCEACSALRVL*NRST*SLKGSFGPCFMSKMLTGLYILTILFNPRITHLL*ISPTGIGGLFVIHPICS*RVLVVPAISLPLGSLIWPGATGPACTGCNLSHSAASSLMVSFNICIAA*CPPTVFSMVFISCGVAPSANAENIGITSGLKAFSSTTFTHAFKVLGDMA*CTICPWRFCTIG*FWLTWLLFPAPAAACCAFILLLFCSSSILSSAPLVSCISIL*CIQ*RTATVLYNDLSSSDPVWRDGCSCPSICLQPSDVSNRPGLTANRSSSLLAHTRCFNLYFFFPPGLNRIFSHWSNFPPLNTDALAPISLLLASAR*KLFWRTHQSPKQ*AK*IQLP**CRKAILGTKRRLLSVSTVVK*GI*QKIAGPPGERAVGNVDRKDTR*KIVVRDRLIF*GNSGLPTRGGQGISFRADQSQQPHQRRASGLGKRQQLPLRSRSR*TGNYIP*", "nucleotides": "CCTGAAAGCGAAAGTAGAACCAGAGAAGTTCTCTCGACGCAGGACTCGGCTTGCTGAGCTTTATGGCCGGGTCCCCCCACTCCCTGACATGCTGTCATCATTTCTTCTAGTGTAGCTGCTGGTCCCAATGCTTTTAAAATAGTCTTACAATCTGGGTTTGCATTTTGGACCAACAAGGTTTCTGTCATCCAATTTTTTACATCCTGTGAAGCTTGCTCGGCTCTTAGGGTTTTATAGAACCGGTCTACATAGTCTCTAAAGGGTTCCTTTGGTCCTTGTTTTATGTCCAAAATGCTGACAGGACTATACATTCTTACTATTTTATTTAATCCCAGGATTACCCATCTTTTATAGATATCTCCTACTGGGATAGGTGGATTATTTGTCATCCATCCTATTTGTTCCTGAAGGGTACTAGTAGTTCCTGCTATATCACTTCCCCTTGGTTCTCTCATTTGGCCTGGTGCAACAGGCCCTGCATGCACTGGATGCAATCTATCCCATTCTGCAGCTTCCTCATTGATGGTCTCTTTTAATATTTGCATTGCTGCTTGATGTCCCCCCACTGTATTTAGCATGGTGTTTATATCTTGTGGGGTGGCTCCTTCTGCTAATGCTGAAAACATAGGTATTACTTCTGGGCTAAAAGCCTTTTCTTCTACTACTTTTACCCATGCATTTAAAGTTCTAGGTGACATGGCCTGATGTACCATTTGCCCCTGGAGGTTTTGCACTATAGGGTAGTTTTGGCTGACCTGGCTGTTATTTCCTGCGCCAGCTGCTGCTTGCTGTGCTTTCATCTTGCTTTTGTTTTGCTCTTCCTCTATCTTATCTAGCGCTCCCTTGGTGTCTTGTATCTCTATCCTTTGATGTATACAATAGAGGACCGCTACTGTATTATATAATGATTTAAGCTCTTCTGACCCTGTTTGGAGGGATGGCTGTAGCTGTCCCAGTATTTGTCTACAGCCTTCTGATGTTTCTAACAGGCCAGGATTAACTGCGAATCGTTCTAGCTCCCTGCTTGCCCATACTAGATGTTTTAACCTATATTTTTTCTTTCCTCCTGGCCTTAACCGAATTTTTTCCCATTGGTCTAATTTTCCCCCGCTTAATACTGACGCTCTCGCACCCATCTCTCTCCTTCTAGCCTCCGCTAGGTAAAAACTTTTTTGGCGTACTCACCAGTCGCCGAAGCAATGAGCCAAGTAAATTCAACTACCGTAATGATGCAGAAAGGCAATTTTAGGAACCAAAAGAAGACTGTTAAGTGTTTCAACTGTGGTAAAATAGGGCATATAGCAAAAAATTGCAGGGCCCCCAGGAGAAAGGGCTGTTGGAAATGTGGACAGGAAGGACACCAGATGAAAGATTGTAGTGAGAGACAGGCTAATTTTTTAGGGAAACTCTGGCCTTCCCACAAGGGGAGGCCAGGGAATTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAGGAGAGCTTCAGGTTTGGGGAAGAGACAGCAACTCCCCCTCAGAAGCAGGAGCCGATAGACAGGGAACTATATTCCTTAG" @@ -2699,7 +2699,7 @@ "subtype_start": 1435, "subtype_end": 4447, "orientation": "forward", - "distance": 0.19680957128614174, + "distance": 0.2409491492322341, "protein": "FFRETLAFPQGEAREFPSEQTRANSPTRGELQVWGRDSNSPSEAGADRQGTIFLSFPQITLWQRPLVSIKVGGQLKEALLDTGADDTVLEEMCLPGKWKPKMIGGIGGFIKVRQYDQIPIEIYGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVRLKPGMDGPKIKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPIFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRKQNPDMVIYQYMDDLYIGSDLELGQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPITLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKSLTEVVPLTREAELELAENREILKEPVHGVYYDPSKDLIAELQKQGQGQWTYQIYQEPFKNLKTGKYARIKGTHTNDVKQLTQAVQKIATESIVIWGKTPKFRLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKDPIVGAETFYVDGAANRDTKLGKAGYVTDRGRQKIVPLTDTTNQKTELQAIYLALQDSGSEVNIVSDSQYAIGILQAQPDKSESELVNQIIEQLIKKEKVYLTWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVNTIHTDNGSNFTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGRYSAGERIVDMIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSEIKVVPRRKAKIIRDYGKQMAGDDCVAGRQDED", "aminoacids": "FFRETLAFPQGEAREFPSEQTRANSPTRGELQVWGRDSNSPSEAGADRQGTIFLSFPQITLWQRPLVSIKVGGQLKEALLDTGADDTVLEEMCLPGKWKPKMIGGIGGFIKVRQYDQIPIEIYGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVRLKPGMDGPKIKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPIFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRKQNPDMVIYQYMDDLYIGSDLELGQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPITLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKSLTEVVPLTREAELELAENREILKEPVHGVYYDPSKDLIAELQKQGQGQWTYQIYQEPFKNLKTGKYARIKGTHTNDVKQLTQAVQKIATESIVIWGKTPKFRLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKDPIVGAETFYVDGAANRDTKLGKAGYVTDRGRQKIVPLTDTTNQKTELQAIYLALQDSGSEVNIVSDSQYAIGILQAQPDKSESELVNQIIEQLIKKEKVYLTWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAIHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVNTIHTDNGSNFTSTAVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGRYSAGERIVDMIASDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSEIKVVPRRKAKIIRDYGKQMAGDDCVAGRQDED*", "nucleotides": "TTTTTTAGGGAAACTCTGGCCTTCCCACAAGGGGAGGCCAGGGAATTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAGGAGAGCTTCAGGTTTGGGGAAGAGACAGCAACTCCCCCTCAGAAGCAGGAGCCGATAGACAGGGAACTATATTCCTTAGCTTCCCTCAAATCACTCTTTGGCAACGACCCCTCGTCTCAATAAAAGTAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGTGTTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAATATGATCAGATACCCATAGAAATCTATGGACATAAAGCTATAGGTACAGTGTTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATTTGTTGACTCAGATTGGGTGCACTTTAAATTTTCCCATTAGTCCTATCGAAACTGTACCAGTAAGATTAAAGCCAGGAATGGATGGCCCAAAAATTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAGATTTCAAAGATTGGGCCTGAAAATCCATACAATACTCCAATATTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGGGAACTTAATAAGAGAACTCAAGATTTCTGGGAAGTTCAATTGGGAATACCGCATCCCGCAGGATTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCATTAGATAAAGACTTTAGGAAGTATACTGCATTTACCATACCCAGTGTAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAGCTAGCATGACAAAAATTTTAGAGCCTTTTAGGAAGCAAAATCCAGACATGGTTATTTATCAATACATGGATGATCTATATATAGGATCTGACTTGGAATTAGGACAGCATAGGACAAAAATAGAGGAACTGAGACAACATCTATTGAGGTGGGGGTTTACCACACCAGACAAGAAGCATCAGAAAGAACCTCCATTCCTCTGGATGGGGTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAACACTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTAGGAAAATTAAATTGGGCAAGTCAGATTTATGCAGGGATTAAAGTAAGGCAGTTATGTAAACTCCTTAGAGGAACCAAATCACTAACAGAAGTAGTACCACTAACAAGAGAGGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTCTAAAAGAACCGGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAATTACAAAAGCAGGGACAAGGCCAGTGGACTTATCAGATTTATCAAGAACCATTTAAAAATCTGAAAACAGGAAAGTATGCAAGAATAAAGGGTACCCACACTAATGATGTAAAACAATTAACACAGGCTGTGCAAAAAATAGCCACAGAAAGCATAGTAATATGGGGAAAAACTCCTAAATTTAGACTACCCATACAAAAAGAAACATGGGAAACATGGTGGACAGAGTATTGGCAAGCCACCTGGATCCCTGAGTGGGAGTTTGTTAATACCCCTCCCTTAGTAAAATTATGGTACCAGTTAGAGAAAGACCCCATAGTAGGAGCAGAAACATTCTATGTCGATGGGGCAGCCAATAGGGATACTAAATTAGGAAAAGCAGGATATGTTACTGACAGGGGAAGACAAAAAATTGTCCCCCTAACTGACACAACAAATCAGAAGACTGAGTTACAAGCAATTTACCTAGCTCTGCAGGATTCAGGATCAGAAGTAAACATAGTATCAGACTCACAGTATGCAATAGGAATTCTTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAATCAAATAATAGAGCAGTTAATAAAAAAGGAAAAAGTCTACCTGACATGGGTGCCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTGCTGGAATCAGGAAAGTATTATTCTTAGATGGAATAGATAAGGCCCAAGAAGAACATGAGAAATATCACAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCCATAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGTTAAAAGGAGAAGCCATACATGGACAAGTAGACTGTAGTCCAGGAATATGGCAACTAGATTGTACACATTTGGAAGGAAAAGTTATCCTGGTAGCAGTTCATGTGGCCAGTGGATATATTGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATATTTTATCTTAAAATTAGCAGGAAGATGGCCAGTAAACACAATACATACAGACAATGGCAGCAACTTCACTAGCACTGCGGTTAAAGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGGGATCAAGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGAGGTACAGTGCAGGGGAAAGAATAGTAGACATGATAGCATCAGACATACAAACTAAAGAATTACAAAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTCCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAACAGTGAAATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATCATTAGGGACTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAGGTAGACAGGATGAGGATTAA" @@ -2711,7 +2711,7 @@ "subtype_start": 4391, "subtype_end": 4970, "orientation": "forward", - "distance": 0.546875, + "distance": 0.4686663095875737, "protein": "MENRWQVMIVWQVDRMRINAWKSLVKHHMHVSRKVERWVYKHHYESTNPRISSEVHIPLGDARLKITTYWGLHTGERDWHLGQGVSIEWRKKSYNTQVDPEVADQLIHLYYFDCFSESAIRKAIVGHRVSPSCEYQAGHNKVGSLQYLALAALVKSKKTKPPLPSVTKLTEDRWNKPQRTKGRRGNHIMNGH", "aminoacids": "MENRWQVMIVWQVDRMRINAWKSLVKHHMHVSRKVERWVYKHHYESTNPRISSEVHIPLGDARLKITTYWGLHTGERDWHLGQGVSIEWRKKSYNTQVDPEVADQLIHLYYFDCFSESAIRKAIVGHRVSPSCEYQAGHNKVGSLQYLALAALVKSKKTKPPLPSVTKLTEDRWNKPQRTKGRRGNHIMNGH*", "nucleotides": "ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAGGTAGACAGGATGAGGATTAATGCATGGAAAAGCTTAGTAAAGCACCATATGCATGTTTCAAGGAAAGTTGAGAGATGGGTTTATAAACATCACTATGAAAGTACTAATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTAAAAATAACAACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCATTTGGGCCAGGGAGTCTCCATAGAATGGAGAAAAAAGAGCTATAATACACAAGTAGACCCTGAAGTAGCAGACCAACTAATCCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAAAGCCATAGTAGGACATAGAGTTAGTCCTAGTTGTGAATATCAAGCAGGACATAACAAGGTAGGATCCCTACAGTACTTGGCATTAGCAGCATTAGTAAAATCAAAAAAGACAAAGCCACCTTTGCCTAGCGTTACGAAGCTGACGGAGGATAGATGGAACAAGCCCCAGAGGACCAAGGGCCGCAGAGGGAACCATATAATGAATGGGCACTAG" @@ -2723,7 +2723,7 @@ "subtype_start": 4909, "subtype_end": 5200, "orientation": "forward", - "distance": 0.48333333333333317, + "distance": 0.4380664652567975, "protein": "MEQAPEDQGPQREPYNEWALELLEELKREAVRHFPRIWLQSLGQYVYETYGDTWTGVEAIIRILQQMLFIHFRIGCQHSRIGIIRRGRTRNGASRP", "aminoacids": "MEQAPEDQGPQREPYNEWALELLEELKREAVRHFPRIWLQSLGQYVYETYGDTWTGVEAIIRILQQMLFIHFRIGCQHSRIGIIRRGRTRNGASRP*", "nucleotides": "ATGGAACAAGCCCCAGAGGACCAAGGGCCGCAGAGGGAACCATATAATGAATGGGCACTAGAGCTTTTAGAGGAGCTTAAGAGAGAAGCTGTTAGACATTTCCCTAGGATATGGCTTCAGAGCTTAGGACAATACGTCTATGAAACTTATGGGGATACTTGGACAGGAGTGGAAGCCATAATAAGAATTTTGCAACAAATGCTGTTCATTCATTTCAGAATTGGGTGTCAACATAGCAGAATAGGCATTATTCGACGAGGGAGAACAAGAAATGGAGCCAGTAGACCCTAG" @@ -2735,7 +2735,7 @@ "subtype_start": 5180, "subtype_end": 5395, "orientation": "forward", - "distance": 0.6111111111111112, + "distance": 0.49638989169675096, "protein": "MEPVDPSLAPWKHPGSQPKTACTNCYCKKCCLHCQVCFTKKGLGISYGRKKRRQRRRPPQSSKAHQNPLPKQ", "aminoacids": "MEPVDPSLAPWKHPGSQPKTACTNCYCKKCCLHCQVCFTKKGLGISYGRKKRRQRRRPPQSSKAHQNPLPKQ*", "nucleotides": "ATGGAGCCAGTAGACCCTAGCCTAGCGCCCTGGAAGCACCCAGGAAGTCAGCCTAAGACTGCTTGTACCAATTGCTATTGTAAAAAGTGCTGCTTACATTGCCAAGTTTGTTTCACAAAAAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGACCTCCTCAAAGCAGTAAGGCTCATCAAAATCCTCTACCAAAGCAGTAA" @@ -2747,7 +2747,7 @@ "subtype_start": 5319, "subtype_end": 5395, "orientation": "forward", - "distance": 0.5769230769230769, + "distance": 0.48200514138817474, "protein": "MAGRSGDSDEDLLKAVRLIKILYQSS", "aminoacids": "MAGRSGDSDEDLLKAVRLIKILYQSS", "nucleotides": "ATGGCAGGAAGAAGCGGAGACAGCGACGAAGACCTCCTCAAAGCAGTAAGGCTCATCAAAATCCTCTACCAAAGCAGT" @@ -2759,7 +2759,7 @@ "subtype_start": 5411, "subtype_end": 5657, "orientation": "forward", - "distance": 0.48124999999999996, + "distance": 0.4370034052213393, "protein": "MQSLQIGAIVALVVGTIIAIVVWSIVLIEYRKILRQKKIDRIIDRIVERAEDSGNESEGDQEELSALVERGHDAPWNVNDL", "aminoacids": "MQSLQIGAIVALVVGTIIAIVVWSIVLIEYRKILRQKKIDRIIDRIVERAEDSGNESEGDQEELSALVERGHDAPWNVNDL*", "nucleotides": "ATGCAATCTTTGCAAATAGGAGCAATAGTAGCATTAGTAGTAGGAACAATAATAGCAATAGTTGTGTGGTCTATAGTACTCATAGAATATAGGAAAATATTAAGACAAAAGAAAATAGATAGAATAATAGATAGAATAGTAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGAGACCAGGAAGAGTTATCAGCACTGGTGGAAAGGGGGCATGATGCTCCTTGGAATGTTAATGATCTGTAG" @@ -2771,7 +2771,7 @@ "subtype_start": 5574, "subtype_end": 8124, "orientation": "forward", - "distance": 0.5259128386336873, + "distance": 0.4589466326782341, "protein": "MRVKETRKSYQHWWKGGMMLLGMLMICSAATNLWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVLLGNVTEDFNAWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVILHCTDVNNTRNGMTGELKNCSFNITTKITNKVQKEYALFYKLDVVPINNKDNDTSFNNNSYRLISCNTSVITQACPKVSFEPIPIHYCTPAGYAILRCNNETFSGKGPCTNVSSIQCTHGIRPVVSTQLLLNGSLAKQEVVIRSQNFSDNVKTIIVQLKTPVKINCTRPNNNTRKSIHAGPGKVIYATGEIIGDIRQAHCNISAAEWNDTLGQIVTKLQEQFGNKTIVFNQSSGGDPEIVTHSFNCGGEFFYCNSTQLFNSTWNNNGTNTWNSTGNITLPCKIRQIVNMWQKVGKAMYAPPIRGQIKCSSNITGLLLTRDGGNESESETFRPGGGDMRDNWRSELYKYKVVRIEPLGLAPTKAKRRVVQREKRAIGTLGAVFLGFLGTAGSTMGAASMTLTVQARQLLSGIVQQQNNLLKAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQLLGIWGCSGKLICTTAVPWNASWSNKSLNEIWDNMTWMEWEKEISNYTQLIYTLIEESQSQQEKNEQELLALDKWDSLWSWFSITKWLWYIKIFIMIVGGLIGLRIVFTVLSIVNRVRQGYSPLSFQTRFPAPRGPDRPEGIEEDGGERDRDRSTRLVTGFLPLFWDDLRSLCLFSYHRLRDLLLIAARIVELLGHRGWEILKHWWSLLQYWSQELKKSAVSLLNATAIAVAEGTDRIIEVVQRACRAILHIPVRLRQGLERALL", "aminoacids": "MRVKETRKSYQHWWKGGMMLLGMLMICSAATNLWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVLLGNVTEDFNAWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVILHCTDVNNTRNGMTGELKNCSFNITTKITNKVQKEYALFYKLDVVPINNKDNDTSFNNNSYRLISCNTSVITQACPKVSFEPIPIHYCTPAGYAILRCNNETFSGKGPCTNVSSIQCTHGIRPVVSTQLLLNGSLAKQEVVIRSQNFSDNVKTIIVQLKTPVKINCTRPNNNTRKSIHAGPGKVIYATGEIIGDIRQAHCNISAAEWNDTLGQIVTKLQEQFGNKTIVFNQSSGGDPEIVTHSFNCGGEFFYCNSTQLFNSTWNNNGTNTWNSTGNITLPCKIRQIVNMWQKVGKAMYAPPIRGQIKCSSNITGLLLTRDGGNESESETFRPGGGDMRDNWRSELYKYKVVRIEPLGLAPTKAKRRVVQREKRAIGTLGAVFLGFLGTAGSTMGAASMTLTVQARQLLSGIVQQQNNLLKAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQLLGIWGCSGKLICTTAVPWNASWSNKSLNEIWDNMTWMEWEKEISNYTQLIYTLIEESQSQQEKNEQELLALDKWDSLWSWFSITKWLWYIKIFIMIVGGLIGLRIVFTVLSIVNRVRQGYSPLSFQTRFPAPRGPDRPEGIEEDGGERDRDRSTRLVTGFLPLFWDDLRSLCLFSYHRLRDLLLIAARIVELLGHRGWEILKHWWSLLQYWSQELKKSAVSLLNATAIAVAEGTDRIIEVVQRACRAILHIPVRLRQGLERALL*", "nucleotides": "ATGAGAGTGAAGGAGACCAGGAAGAGTTATCAGCACTGGTGGAAAGGGGGCATGATGCTCCTTGGAATGTTAATGATCTGTAGTGCTGCAACAAATTTGTGGGTCACAGTCTATTATGGGGTACCTGTATGGAAGGAAGCAACCACCACTCTATTTTGTGCATCAGATGCTAAAGCATATGATACAGAGGTACATAATGTTTGGGCCACGCATGCCTGTGTACCCACGGACCCCAACCCACAAGAAGTATTATTGGGAAATGTGACAGAAGATTTTAATGCATGGAAAAATAACATGGTAGAGCAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGCTTAAAGCCATGTGTAAAATTAACCCCACTTTGTGTTATTTTGCATTGCACTGATGTCAACAATACTAGAAATGGGATGACAGGAGAACTAAAAAACTGCTCTTTCAATATCACCACAAAAATAACAAATAAGGTACAGAAAGAATATGCACTCTTTTATAAACTTGATGTAGTACCAATAAATAATAAGGATAATGATACTAGCTTTAATAATAATAGCTATAGGTTGATAAGTTGTAACACCTCAGTTATTACACAGGCTTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTACTGTACCCCGGCTGGTTATGCAATTCTAAGGTGTAACAATGAGACATTCAGTGGAAAAGGGCCATGTACAAATGTCAGCTCAATACAATGTACACATGGAATTAGGCCAGTAGTGTCAACTCAACTGCTGTTAAATGGCAGTCTAGCAAAACAGGAGGTAGTAATTAGATCTCAAAATTTCTCGGACAATGTTAAAACCATAATAGTACAGCTGAAGACCCCTGTAAAAATTAACTGTACAAGGCCCAATAACAATACAAGAAAAAGTATACATGCAGGACCAGGGAAAGTAATTTATGCAACAGGAGAAATAATAGGAGATATAAGACAAGCACATTGCAACATTAGTGCAGCAGAGTGGAATGATACTTTAGGACAGATAGTTACAAAATTACAAGAACAATTTGGGAATAAAACAATAGTCTTCAATCAATCGTCAGGAGGGGACCCAGAAATTGTAACACACAGTTTTAATTGTGGAGGGGAATTTTTTTACTGTAATTCAACACAACTGTTTAATAGTACTTGGAATAATAATGGTACTAATACTTGGAATAGTACAGGTAATATCACACTCCCATGTAAAATAAGGCAAATTGTAAACATGTGGCAGAAAGTAGGAAAAGCAATGTATGCTCCTCCCATCCGTGGACAAATTAAATGTTCATCAAATATTACAGGGCTGCTATTAACAAGAGATGGTGGTAACGAGAGTGAGAGCGAAACCTTCAGACCTGGCGGAGGAGATATGAGGGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAGAATTGAACCATTAGGACTAGCACCCACTAAGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAATAGGAACACTGGGAGCTGTGTTCCTTGGGTTCTTGGGAACAGCAGGAAGCACTATGGGCGCAGCGTCAATGACGCTGACGGTACAGGCCAGGCAATTATTGTCTGGTATAGTGCAGCAGCAGAACAATCTGCTGAAGGCTATTGAGGCGCAACAGCATCTGTTGCAACTCACAGTCTGGGGCATTAAACAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTACAGGATCAACAGCTCCTGGGGATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCTTGGAATGCTAGTTGGAGCAATAAATCTCTGAATGAAATTTGGGATAACATGACCTGGATGGAGTGGGAAAAAGAAATTAGTAATTACACACAATTAATATACACTTTAATTGAAGAATCGCAGAGCCAGCAAGAAAAGAATGAACAAGAATTATTGGCACTAGATAAGTGGGACAGCTTGTGGAGTTGGTTTAGTATAACAAAATGGCTGTGGTATATAAAAATATTCATAATGATAGTAGGAGGCTTAATAGGGTTAAGAATAGTTTTTACTGTACTTTCTATAGTAAATAGAGTTAGGCAGGGATATTCACCATTGTCATTTCAGACCCGCTTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGACGGTGGAGAGAGAGACAGAGACAGATCCACACGCTTAGTAACCGGATTCTTACCACTTTTCTGGGACGACCTGAGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGCAGCGAGGATTGTGGAACTTCTGGGACACAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTACAATATTGGAGTCAGGAACTAAAAAAAAGTGCTGTTAGCTTGCTCAATGCCACAGCTATAGCAGTAGCTGAGGGGACAGATAGGATTATAGAAGTAGTACAAAGAGCTTGTAGAGCTATTCTCCACATACCTGTAAGACTAAGACAAGGCTTAGAAAGAGCTTTGCTATAA" @@ -2783,7 +2783,7 @@ "subtype_start": 7705, "subtype_end": 7798, "orientation": "forward", - "distance": 0.5, + "distance": 0.4464285714285715, "protein": "RPASQPRGDPTGPKESKKTVERETETDPHA", "aminoacids": "RPASQPRGDPTGPKESKKTVERETETDPHA**", "nucleotides": "AGACCCGCTTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGACGGTGGAGAGAGAGACAGAGACAGATCCACACGCTTAGTAA" @@ -2795,7 +2795,7 @@ "subtype_start": 7706, "subtype_end": 7982, "orientation": "forward", - "distance": 0.48241758241758226, + "distance": 0.43759968102073354, "protein": "DPLPSPEGTRQARRNRRRRWRERQRQIHTLSNRILTTFLGRPEEPVPLQLPPLERLTLDCSEDCGTSGTQGVGNPQTLVESPTILESGTKKKCC", "aminoacids": "DPLPSPEGTRQARRNRRRRWRERQRQIHTLSNRILTTFLGRPEEPVPLQLPPLERLTLDCSEDCGTSGTQGVGNPQTLVESPTILESGTKKKCC*", "nucleotides": "GACCCGCTTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGACGGTGGAGAGAGAGACAGAGACAGATCCACACGCTTAGTAACCGGATTCTTACCACTTTTCTGGGACGACCTGAGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGCAGCGAGGATTGTGGAACTTCTGGGACACAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTACAATATTGGAGTCAGGAACTAAAAAAAAGTGCTGTTAG" @@ -2807,7 +2807,7 @@ "subtype_start": 8125, "subtype_end": 8752, "orientation": "forward", - "distance": 0.4668269230769231, + "distance": 0.429531982659471, "protein": "MGGKWSKSSVVGWPAVRERIRRAGPAAEGVGAVSRDLDKHGAITSNNTPATNAACAWLEAQEEEEVGFPVRPQVPLRPMTYKGALDLSHFLKEKGGLEGMIYSQQRQDILDLWVYHTQGYFPDWQNYTPGPGVRFPLTFGWCFKLVPLETEQVEAATGGENNCLLHPLNQHGMDDPEREVLMWKFDSSLAFHHRAKELHPEYYKDC", "aminoacids": "MGGKWSKSSVVGWPAVRERIRRAGPAAEGVGAVSRDLDKHGAITSNNTPATNAACAWLEAQEEEEVGFPVRPQVPLRPMTYKGALDLSHFLKEKGGLEGMIYSQQRQDILDLWVYHTQGYFPDWQNYTPGPGVRFPLTFGWCFKLVPLETEQVEAATGGENNCLLHPLNQHGMDDPEREVLMWKFDSSLAFHHRAKELHPEYYKDC*", "nucleotides": "ATGGGTGGCAAGTGGTCAAAAAGTAGTGTGGTTGGATGGCCTGCTGTAAGGGAAAGAATAAGAAGAGCTGGGCCAGCAGCAGAAGGGGTGGGAGCAGTATCTCGAGACCTGGACAAACATGGAGCAATCACAAGTAACAATACACCAGCTACTAATGCTGCTTGTGCCTGGCTAGAAGCACAAGAGGAGGAGGAGGTGGGTTTTCCAGTTAGGCCTCAAGTACCTTTAAGACCAATGACTTACAAGGGAGCTTTGGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGATGATATACTCCCAGCAAAGACAAGATATCCTTGATCTGTGGGTCTACCACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGACCAGGGGTCAGGTTTCCACTGACCTTTGGATGGTGCTTCAAACTAGTACCACTTGAGACAGAGCAGGTAGAAGCGGCCACTGGAGGAGAGAACAACTGCTTGTTACACCCTTTGAACCAGCATGGGATGGATGACCCGGAGAGAGAAGTACTAATGTGGAAGTTTGACAGCAGCCTAGCATTTCATCACAGAGCCAAAGAGCTGCATCCGGAGTACTACAAAGACTGCTGA" @@ -2821,7 +2821,7 @@ "subtype_start": 789, "subtype_end": 2292, "orientation": "forward", - "distance": 0.2571999999999999, + "distance": 0.2932056543547651, "protein": "MGARASILSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWTTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSANVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE", "aminoacids": "MGARASILSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWTTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSANVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE*R*", "nucleotides": "ATGGGTGCGAGAGCGTCAATATTAAGCGGGGGAAAATTAGATGCATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATTTAGTATGGGCAAGCAGGGAGCTAGAACGATTTGCCGTTAACCCTGGCCTGTTAGAAACATCAGAGGGATGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATTTAATGCAGTAGCAGTCCTCTATTGTGTACATCAAAGGATACAGGTACAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGTAGCAGCAGCTGACACTGACACAGGAAACAGCAGCCAAAATTACCCCATAGTGCAGAACCTCCAGGGGCAAATGGTACATCAGCCCCTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAAAAGGCCTTCAGCCCAGAAGTCATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGACGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCTTGGGATTAAATAAAATAGTAAGGATGTATAGCCCTACCAGTATTCTGGATATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAGAACTTTAAGAGCTGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATTCGAATCCAGATTGTAAGACTATTTTAAAAGCATTAGGACCAGCAGCAACACTAGAGGAAATGATGACAGCATGTCAAGGAGTGGGGGGACCAGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAAATTCAGCTAATGTAATGATGCAGAGAGGCAATTTTAGAAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACATCAAATGAAAGACTGTACAGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAG" @@ -2833,7 +2833,7 @@ "subtype_start": 2084, "subtype_end": 5096, "orientation": "forward", - "distance": 0.14755732801595212, + "distance": 0.1922427454342348, "protein": "FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSTGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED", "aminoacids": "FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSTGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*", "nucleotides": "TTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAGGGGGGCAATTTAAAGAAGCTTTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACCCATAGAAATCTGTGGACACAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGCTTGGTTGTACCTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTCAATAAGAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAATTCCCTTAGATAAAGAATTCAGGAAGTATACTGCATTTACCATACCTAGTACAAATAATGAGACACCAGGGATTAGGTATGAGTACAATGTGCTGCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGCAAAATCCAGATATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAACTGAGACAACATCTGTTAAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAGTGGACAGTACAGCCTATAATACTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTACGCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAGGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTTTAAGAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGCAATGGACAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTACAAAAGATAGCCACAGAAAGCATAGTAATATGGGGAAAAACTCCTAAATTTAGACTACCTATACAAAAAGAAACATGGGAGACATGGTGGGCAGAGTACTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAATTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACTAAATTAGGCAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAGGTTATCTCCCTAACGGACACAACAAATCAAAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATCAGAAGTAAACATAGTAACAGACTCACAATATACATTAGGAATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAATCAGATAATAGAGCAGTTAATAAAAAAGGAAAAAGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGACAAACTAGTCAGTACTGGAGTCAGGAGAGTACTATTTCTAGATGGAATAGATAAGGCCCAAGAAGACCATGAGAAATATCACAGTAATTGGAGAGCAATGGCTGGTGATTTTAATATACCCCCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCAAAAAGGAGAGGCCATGCATGGACAAGTAGATTGTAGTCCAGGAATATGGCAACTAGATTGTACACATCTAGAAGGGAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTCTCCTGAAACTAGCAGGGAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTAATGTGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCCATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTATAGTGCAGGGGAAAGAATAGTAGATATAATAGCAACAGACCTACAAACTAAAGAATTACAGAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGGAGAAAAGCAAAAATCATTAGGGATTATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG" @@ -2845,7 +2845,7 @@ "subtype_start": 5040, "subtype_end": 5619, "orientation": "forward", - "distance": 0.35416666666666674, + "distance": 0.36355859709153127, "protein": "MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH", "aminoacids": "MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH*", "nucleotides": "ATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATGTTTCAAAGAAAACTAAAGGATGGTTTTATAGACATCACTATGAAAGCACTCATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTGGTAGTAACAACATATTGGGGCCTGAATACAGGAGAAAGAGAATGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGAAAAAGGAAATATAGCACACAAGTTGACCCTAACCTAGCAGACCAACTAATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACATATAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGCTCTCTACAATACTTGGCACTAAAAGCATTAACAACACCAAAGAGAAGAAAGCCACCTTTACCTAGTGTTAGGAAACTGACAGAGGATAGATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAG" @@ -2857,7 +2857,7 @@ "subtype_start": 5558, "subtype_end": 5850, "orientation": "forward", - "distance": 0.4038461538461544, + "distance": 0.39444027047332864, "protein": "MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS", "aminoacids": "MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS*T", "nucleotides": "ATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAGAGCTTTTAGAGGAACTTAAGAATGAAGCGGTTAGACATTTTCCTAGGCCGTGGCTCCATGGCTTAGGACAACATATCTATGAAACTTATGGGGACACTTGGACAGGAGTGGAGGCCATAATAAGAACCCTGCAACAACTGCTGTTTATTCATTTCAGACTTGGGTGTCGACATAGCAGAATAGGCATTGTGCCACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACT" @@ -2869,7 +2869,7 @@ "subtype_start": 5830, "subtype_end": 6045, "orientation": "forward", - "distance": 0.29166666666666674, + "distance": 0.31992687385740404, "protein": "MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ", "aminoacids": "MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ*", "nucleotides": "ATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCACCCAGGAAGTCAGCCTAAAACTCCTTGTACTAACTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAAAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGTAA" @@ -2881,7 +2881,7 @@ "subtype_start": 5969, "subtype_end": 6045, "orientation": "forward", - "distance": 0.5769230769230769, + "distance": 0.48200514138817474, "protein": "MAGRSGDSDEELLKAVRLIKILYQSS", "aminoacids": "MAGRSGDSDEELLKAVRLIKILYQSS", "nucleotides": "ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGT" @@ -2893,7 +2893,7 @@ "subtype_start": 6061, "subtype_end": 6310, "orientation": "forward", - "distance": 0.6865853658536587, + "distance": 0.5254806794847863, "protein": "MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAKDSGNESEGDQEELSALMEMGHHAPGDVDDL", "aminoacids": "MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAKDSGNESEGDQEELSALMEMGHHAPGDVDDL*", "nucleotides": "ATGCAACCTCTGCACATAGCAGCAATAGTAGGATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGACCATAGTGTTAATAGAATATAGGAAAATATTAAGACAAAAAAGGATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAAAAGACAGTGGCAATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAG" @@ -2905,7 +2905,7 @@ "subtype_start": 6224, "subtype_end": 8795, "orientation": "forward", - "distance": 0.49135514018691584, + "distance": 0.4421225244922844, "protein": "MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEAHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRNKMQKEYALFYKLDVVPIDNDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYENKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSETETFRPGGGDMKDNWRSELYKYKVEKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL", "aminoacids": "MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEAHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRNKMQKEYALFYKLDVVPIDNDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYENKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSETETFRPGGGDMKDNWRSELYKYKVEKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL*", "nucleotides": "ATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTGACAGTCTATTATGGGGTACCTGTATGGAAAGAAGCAAACACCACTCTATTTTGTGCATCGGATGCTAAAGCATATACCACAGAGGCACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGGATTGGAAAATGTGACAGAAAATTTTAACATGTGGAAAAATAACATGGTAGAACAGATGCATGAGGATGTAATCAATTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCACTAATCTGAATGTTACTAATACCAATAGCAGTAGTGAGGAGGGAAAGATGGCGGAAGAAATGAGAAACTGCTCTTTCAATATCACCACAAAAATAAGAAATAAGATGCAGAAGGAATATGCACTTTTTTATAAACTTGATGTAGTACCAATAGATAATGATAATACAAGTTATACATTGATAAATTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCTATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAGGATAAGAAGTTCAATGGATCAGGACCATGTAAAAATGTCAGCACAGTACAATGTACACATGGAATTAAGCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTTTAGCAGAAGAAGAGGTAGTAATTAGATCTGAAAATTTCACGAACAATGCTAAAACCATAATAGTACATCTGAAGGAACCTATACAAATTAATTGTACAAGACCCAACAACAATACAATGAAAAGTATCCCTCTAGGACCAGGAAGAGCATTCTATGCAACAGGAGCCATAATAGGAGATATAAGACAAGCACATTGTAACCTTAGTAGAAAAGCATGGAATAATACTTTAAAACAGGTAGTTGAAAAATTAAAAGAACAATATGAGAATAAAACAATAATCTTTAATCACTCCTCAGGAGGGGACCCAGAAATTATAATGCATACTTTTAATTGTGGAGGGGAATTTTTCTATTGTAATACAACACAGCTGTTTAATAGTACTTGGAATAGTACTTGGACTGGGAATGCTACCGAATTAGATGGAAACATCACACTCCCATGCAGAATAAAACAGATTATAAACAGGTGGCAAGAAGTAGGAAAAGCAATGTATGCCCCTCCCATTAGAGGAAAAATTAGATGTTCATCAAATATTACAGGGTTACTATTAGTAAGAGATGGTGGTAACACGAGCGAGACTGAGACCTTCAGACCTGGAGGAGGAGATATGAAGGACAATTGGAGGAGTGAATTATATAAATATAAAGTAGAAAAAATTGAGCCATTAGGAGTAGCACCCACCAGGGCAAAGAGAAGAGTGGTGCAAAGAGAAAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAAGCCAGGCTGTTATTGTCTGGTATAGTGCAACAGCAAAACAATTTGCTGAGAGCTATTGAGGCGCAACAACATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTACAGGATCAACAGCGCCTGGGAATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCCTGGAATGCTAGTTGGAGTAATAAATCTCTGAATCAGATTTGGGATAACATGACCTGGATGGAGTGGGAAAGAGAAATTAACAATTACACAGACACAATATACACCTTAATTGAAAAGGCGCAGAACCAGCAGGAAAAAAATGAACAAGAATTATTGGAATTGGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAAATGGCTGTGGTACATAAAATTATTCATAATGATAGTAGGAGGATTGATAGGTTTAAGAATAGTTTTTGCTGTACTTGCTATAGTAAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGCCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAGCTTATTCAATGTCACAGCCATCGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAAGAGCTTGTAGAGCTCTTCTCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCATTGTTATAA" @@ -2917,7 +2917,7 @@ "subtype_start": 8376, "subtype_end": 8469, "orientation": "forward", - "distance": 0.28666666666666596, + "distance": 0.3161764705882347, "protein": "RPTSQPRGDPTGPKESKKKVEKETETDQFD", "aminoacids": "RPTSQPRGDPTGPKESKKKVEKETETDQFD**", "nucleotides": "AGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGA" @@ -2929,7 +2929,7 @@ "subtype_start": 8377, "subtype_end": 8653, "orientation": "forward", - "distance": 0.39560439560439553, + "distance": 0.38952607660679506, "protein": "DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVPLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE", "aminoacids": "DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVPLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE*CY*", "nucleotides": "GACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGCCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAG" @@ -2941,7 +2941,7 @@ "subtype_start": 8796, "subtype_end": 9417, "orientation": "forward", - "distance": 0.6162601626016186, + "distance": 0.49848743916874616, "protein": "MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPMSLHGMEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC", "aminoacids": "MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPMSLHGMEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC*H*", "nucleotides": "ATGGGGGGCAAGTGGTCAAAAAGTAGTGGGGGTGGATGGCCTGCTGTAAGGGAAAGAATGAGACGAACTGAGCCAGCAGCAGAAGGGGTGGGAGCAGTATCTCGAGACCTGGAAAGACATGGAGCAGTCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGCGCCTGGCTGGAAGCACAAGAAGAGGACAGTGAAGTGGGTTTTCCAGTCAGACCTCAGGTGCCTTTAAGACCAATGACTTTCAAAGGAGCTCTCGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCCCAAAAAAGACAAGATATCCTTGACCTGTGGGTCTACAACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGACCAGATATCCACTGACCTTTGGGTGGTGTTTCAAGCTAGTACCAGTGGAGCCAGAAGAGGCCAATCAAGGAGAGAACAACTGCTTGTTACACCCTATGAGCCTGCATGGGATGGAGGACCCGGAAAAAGAAGTATTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCACATGGCCCGAGAGAAGCATCCGGAGTACTACAAAGACTGCTGACATTGA" @@ -2955,7 +2955,7 @@ "subtype_start": 789, "subtype_end": 2292, "orientation": "forward", - "distance": 0.22980000000000023, + "distance": 0.2704165686043777, "protein": "MGARASVLSGGELDRWEKIYLRPGGKKKYRLKHIVWASRELERFAVNPGLLESSEGCRQILGQLQPSLQTGSEELRSLYNTVAVLYCVHQRINVKDTKEALDTIEEEQNKSKKKAQQAAADTGNSSNSQVSQNYPIVQNLQGQMVHQPISPSTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINDEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHTPPIPVGEIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFYKTLRAEQASQDVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSASIMAQGGNFRNQKRNVKCFNCGKEGHIARNCRAPRKKGCWKCGREGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPAESFRFGEEATAPPQKQETKDKELYPLASLRSLFGNDP", "aminoacids": "MGARASVLSGGELDRWEKIYLRPGGKKKYRLKHIVWASRELERFAVNPGLLESSEGCRQILGQLQPSLQTGSEELRSLYNTVAVLYCVHQRINVKDTKEALDTIEEEQNKSKKKAQQAAADTGNSSNSQVSQNYPIVQNLQGQMVHQPISPSTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINDEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHTPPIPVGEIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFYKTLRAEQASQDVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSASIMAQGGNFRNQKRNVKCFNCGKEGHIARNCRAPRKKGCWKCGREGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPAESFRFGEEATAPPQKQETKDKELYPLASLRSLFGNDP*YQ*E*", "nucleotides": "ATGGGTGCGAGAGCGTCAGTATTAAGCGGCGGAGAATTAGATAGATGGGAAAAAATTTACCTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTCAACCCTGGCCTGTTAGAGTCATCAGAAGGCTGCAGGCAAATTCTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAGATCATTATATAATACAGTAGCAGTCCTCTATTGCGTACATCAAAGGATAAATGTAAAAGACACCAAGGAAGCTCTAGACACAATAGAGGAAGAACAAAACAAAAGTAAGAAAAAGGCACAACAAGCAGCAGCTGACACAGGAAACAGCAGCAACAGCCAGGTCAGCCAAAATTACCCTATAGTGCAGAACCTACAGGGGCAAATGGTACATCAACCCATATCACCTAGCACTTTAAATGCATGGGTAAAAGTGATAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCACTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAGATGTTAAAAGAAACCATCAATGATGAGGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGCCCTATTGCACCAGGCCAGATGAGGGAACCAAGGGGAAGTGACATAGCAGGAACCACTAGTACCCTTCAGGAACAAATAGGATGGATGACACATACTCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCCTGGGGTTAAATAAAATAGTAAGAATGTATAGCCCTGTCAGCATTTTGGACATAAGACAAGGACCAAAGGAACCCTTTAGGGATTATGTAGATCGGTTCTATAAAACTCTAAGGGCTGAGCAAGCGTCACAGGATGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAACCCAGATTGTAAGACCATTTTAAAAGCATTAGGACCAGCAGCTACATTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGGGGACCCGGCCACAAGGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAACAAATTCAGCCTCCATAATGGCGCAAGGAGGCAATTTTAGGAACCAAAAAAGGAATGTTAAGTGTTTCAATTGTGGCAAAGAAGGACACATAGCCAGAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAGGGAAGGACACCAAATGAAAGATTGTACTGAGAGACAGGCTAATTTTTTAGGGAAGATTTGGCCTTCCCACAAGGGAAGGCCAGGGAATTTTCTCCAGAGCAGACCAGAGCCAACAGCCCCGCCAGCAGAGAGCTTCAGGTTTGGGGAAGAGGCAACAGCTCCCCCTCAGAAGCAGGAGACGAAGGACAAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCATAATATCAATAAGAATAG" @@ -2967,7 +2967,7 @@ "subtype_start": 2084, "subtype_end": 5096, "orientation": "forward", - "distance": 0.21934197407776668, + "distance": 0.2613261112298957, "protein": "FFREDLAFPQGKAREFSPEQTRANSPASRELQVWGRGNSSPSEAGDEGQGTVSFSFPQITLWQRPIISIRIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYDQVPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPRVKQWPLTEDKIKALIEICAEMEKEGKITKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKRKKSVTVLDVGDAYFSVPLDQDFRKYTAFTIPSINNEAPGVRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKENPDIVIYQYMDDLYVGSDLEIEQHRTKIEELRQHLLGWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPDKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTEVVPLTEEAELELAENREILKEPVHGAYYDPSKDLIAEVQKQGGDQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKIALEAIVIWGKTPKFKLPIQKETWEMWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIIGAETFYVDGAANRETKLGKAGYVTDRGRQKVVSLMDTTNQRTELHAIHLALQDSGSTVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHKGIGGNEQVDKLVSNGIRKILFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEPMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIAAETGQETAYFILKLAGRWPVKIIHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDSREPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKILRDYGKQMAGDDCVASRQDED", "aminoacids": "FFREDLAFPQGKAREFSPEQTRANSPASRELQVWGRGNSSPSEAGDEGQGTVSFSFPQITLWQRPIISIRIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYDQVPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPRVKQWPLTEDKIKALIEICAEMEKEGKITKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKRKKSVTVLDVGDAYFSVPLDQDFRKYTAFTIPSINNEAPGVRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKENPDIVIYQYMDDLYVGSDLEIEQHRTKIEELRQHLLGWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPDKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTEVVPLTEEAELELAENREILKEPVHGAYYDPSKDLIAEVQKQGGDQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKIALEAIVIWGKTPKFKLPIQKETWEMWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIIGAETFYVDGAANRETKLGKAGYVTDRGRQKVVSLMDTTNQRTELHAIHLALQDSGSTVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHKGIGGNEQVDKLVSNGIRKILFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEPMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIAAETGQETAYFILKLAGRWPVKIIHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDSREPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKILRDYGKQMAGDDCVASRQDED*NMEQFSKTPYAYFKESSEMGLQTSL*", "nucleotides": "TTTTTTAGGGAAGATTTGGCCTTCCCACAAGGGAAGGCCAGGGAATTTTCTCCAGAGCAGACCAGAGCCAACAGCCCCGCCAGCAGAGAGCTTCAGGTTTGGGGAAGAGGCAACAGCTCCCCCTCAGAAGCAGGAGACGAAGGACAAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCATAATATCAATAAGAATAGGAGGGCAACTAAAAGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAATTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGGTACCCATAGAAATTTGTGGACATAAAGCTATAGGTACAGTATTAATAGGACCTACACCAGTCAACATAATTGGAAGAAATCTGTTGACCCAGCTTGGTTGCACTTTAAATTTTCCCATCAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAGAGTTAAACAATGGCCATTGACAGAAGACAAAATAAAGGCATTAATAGAAATTTGTGCAGAAATGGAAAAGGAAGGGAAAATTACAAAAATTGGGCCTGAGAATCCATATAATACTCCAGTGTTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCCGAGAACTTAATAAGAGAACACAAGACTTCTGGGAAGTTCAACTAGGAATACCACATCCCGCAGGGTTAAAAAGGAAAAAATCAGTAACAGTACTAGATGTGGGTGATGCATATTTTTCAGTTCCTTTAGACCAAGACTTCAGAAAGTATACTGCATTTACCATACCCAGTATAAACAATGAGGCACCAGGAGTTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGGAAAATCCAGACATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGAGCAGCACAGAACAAAAATAGAGGAACTGAGACAACATCTGTTGGGGTGGGGACTCACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTTCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATACAGCTGCCAGACAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAGTTGAATTGGGCAAGCCAGATCTATCCAGGGATTAAAGTAAAGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAAGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAGATTCTAAAAGAACCAGTCCATGGAGCATATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGGGGAGACCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGGAAATATGCAAGAACGAGGGGTGCCCACACTAATGATGTAAAACAGTTAACAGAGGCAGTGCAAAAAATAGCCCTAGAAGCCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTACCTATACAAAAGGAAACATGGGAAATGTGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAATTTGTCAATACCCCTCCCTTAGTAAAATTATGGTACCAGTTAGAGAAAGAACCCATAATAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAGACTAAATTAGGAAAAGCAGGGTATGTTACGGACAGAGGAAGACAAAAGGTTGTCTCCCTAATGGACACAACAAATCAGAGGACTGAGTTACACGCAATTCATCTAGCTTTGCAGGATTCAGGATCAACAGTAAACATAGTAACAGACTCACAATATGCCTTAGGGATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAGTCAAATAATAGAGCAGCTAATAAAAAAGGAAAAGATTTACCTGGCATGGGTCCCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTAATGGAATCAGAAAAATACTATTTCTGGATGGAATAGATAAGGCCCAAGAAGAACATGAAAAATATCACAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAGTGTCAGTTAAAAGGAGAACCTATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAACTGGATTGTACACATTTAGAAGGAAAAATTATCCTGGTAGCAGTTCATGTAGCCAGTGGATACATAGAAGCAGAAGTTATTGCCGCAGAAACAGGGCAGGAAACAGCATACTTTATCTTAAAATTGGCAGGAAGATGGCCAGTAAAAATAATACATACAGACAATGGCAGCAATTTCACCAGCACTACGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGTATTCCCTACAATCCTCAAAGTCAAGGAGTAGTAGAATCTATGAATAATGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAATAGACATAATAGCAACAGACATACAAACTAAAGAACTACAAAAACAAATTTCAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGAACCACTTTGGAAAGGACCAGCAAAGCTCCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATCCTTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATATTTCAAAGAAAGCTCAGAGATGGGTTTACAGACATCACTATGA" @@ -2979,7 +2979,7 @@ "subtype_start": 5040, "subtype_end": 5619, "orientation": "forward", - "distance": 0.38020833333333326, + "distance": 0.38012913976254936, "protein": "MENRWQVMIVWQVDRMRIRTWNSLVKHHMHISKKAQRWVYRHHYESHNPKTSSEVHIPLGEARLVIKTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPSLADQLIHLYYFDCFSESAIRNAILGHRVSPRCEYQAGHNKVGSLQYLALTALITPKRRKPPLPSVTKLTEDRWNKSQRTKGHKGSHTMNGH", "aminoacids": "MENRWQVMIVWQVDRMRIRTWNSLVKHHMHISKKAQRWVYRHHYESHNPKTSSEVHIPLGEARLVIKTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPSLADQLIHLYYFDCFSESAIRNAILGHRVSPRCEYQAGHNKVGSLQYLALTALITPKRRKPPLPSVTKLTEDRWNKSQRTKGHKGSHTMNGH*", "nucleotides": "ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATATTTCAAAGAAAGCTCAGAGATGGGTTTACAGACATCACTATGAAAGCCATAATCCAAAAACAAGTTCAGAAGTACACATCCCATTAGGGGAAGCAAGATTGGTAATAAAAACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCATTTGGGCCAGGGAGTATCCATAGAATGGAGGAAAAGGAGATATAGCACACAAGTAGACCCTAGCCTGGCAGACCAACTAATTCACCTGTATTATTTTGATTGTTTTTCAGAATCTGCTATAAGGAATGCCATATTAGGACATAGAGTTAGCCCTAGGTGTGAATATCAGGCAGGACATAACAAGGTAGGATCCCTACAATACTTGGCATTAACAGCATTAATAACACCAAAAAGGAGAAAGCCACCCTTGCCCAGTGTTACAAAATTAACAGAGGACAGATGGAACAAGTCCCAGAGGACCAAGGGCCACAAAGGGAGCCATACAATGAATGGACATTAG" @@ -2991,7 +2991,7 @@ "subtype_start": 5558, "subtype_end": 5850, "orientation": "forward", - "distance": 0.44230769230769296, + "distance": 0.41636495293265796, "protein": "MEQVPEDQGPQREPYNEWTLELLEELKSEAVRHFPRPWLHSLGQYIYETYGDTWAGVEAIIRILQQLLFIHFRIGCQHSRIGIIRQRRARNGASRS", "aminoacids": "MEQVPEDQGPQREPYNEWTLELLEELKSEAVRHFPRPWLHSLGQYIYETYGDTWAGVEAIIRILQQLLFIHFRIGCQHSRIGIIRQRRARNGASRS*L", "nucleotides": "ATGGAACAAGTCCCAGAGGACCAAGGGCCACAAAGGGAGCCATACAATGAATGGACATTAGAGCTCTTAGAAGAGCTTAAGAGTGAAGCTGTTAGGCATTTTCCTAGACCATGGCTTCATAGCTTAGGACAATATATCTATGAAACTTATGGAGATACTTGGGCAGGGGTGGAAGCCATAATAAGAATCCTGCAACAACTGTTGTTCATTCATTTCAGAATTGGGTGTCAACATAGCAGGATAGGAATTATTCGACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGCTT" @@ -3003,7 +3003,7 @@ "subtype_start": 5830, "subtype_end": 6045, "orientation": "forward", - "distance": 0.5694444444444444, + "distance": 0.4787482484820177, "protein": "MEPVDPSLEPWKHPGSQPMTACNNCYCKRCCFHCQVCFTTKGLGISYGRKKRRQRRRASHSSQNHQAALPEQ", "aminoacids": "MEPVDPSLEPWKHPGSQPMTACNNCYCKRCCFHCQVCFTTKGLGISYGRKKRRQRRRASHSSQNHQAALPEQ", "nucleotides": "ATGGAGCCAGTAGATCCTAGCTTAGAGCCCTGGAAACATCCAGGAAGTCAACCTATGACTGCTTGTAACAATTGCTATTGTAAACGGTGTTGCTTTCATTGCCAAGTTTGCTTCACCACAAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTTCTCACAGCAGTCAGAATCATCAAGCGGCTCTACCAGAGCAG" @@ -3015,7 +3015,7 @@ "subtype_start": 5969, "subtype_end": 6045, "orientation": "forward", - "distance": 0.6538461538461537, + "distance": 0.5132850241545894, "protein": "MAGRSGDSDEELLTAVRIIKRLYQSS", "aminoacids": "MAGRSGDSDEELLTAVRIIKRLYQSS", "nucleotides": "ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTTCTCACAGCAGTCAGAATCATCAAGCGGCTCTACCAGAGCAGT" @@ -3027,7 +3027,7 @@ "subtype_start": 6061, "subtype_end": 6310, "orientation": "forward", - "distance": 0.751219512195122, + "distance": 0.5478477410174315, "protein": "MHALKIAAIVGLVVATIIAIVVWSIVLIEYRKILRQRKIDRLIDRIRERAEDSGNESDGDQEELSALVEMGHLVPWDGDDM", "aminoacids": "MHALKIAAIVGLVVATIIAIVVWSIVLIEYRKILRQRKIDRLIDRIRERAEDSGNESDGDQEELSALVEMGHLVPWDGDDM*", "nucleotides": "ATGCATGCCTTAAAAATAGCAGCAATAGTAGGATTAGTAGTAGCAACAATAATAGCAATAGTTGTGTGGTCTATAGTATTAATAGAATATAGGAAAATTTTAAGACAAAGGAAAATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAAAGTGACGGAGACCAGGAGGAATTATCAGCACTTGTGGAGATGGGGCATCTTGTTCCTTGGGATGGTGATGATATGTAG" @@ -3039,7 +3039,7 @@ "subtype_start": 6224, "subtype_end": 8795, "orientation": "forward", - "distance": 1.2265186915887858, + "distance": 0.6642330224848478, "protein": "MHSFNCGGEFFYCNTTQLFNSTWNGTDNWNGTESNNTITLPCRIKQIINLWQEVGRAMYAPPIQGQIRCSSNITGLLLVRDGGSNNSSNDTETFRPGGGDMRDNWRSELYKYKVVKIEPLGIAPTHAKRRVVQREKRAVGLGAFFLGFLGAAGSTMGAASVTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLALERYLKDQQLLGIWGCSGKLICTTNVPWNISWSPRWNRSLDEIWTNMTWRQWEKEIDNYTDTIYNLIELSQNQQEQNEQDLLALDKWASLWSWFDITQWLWYIKIFIMIVGGLIGLRIVFTILSIVNRVRQGYSPLSLQTLLPTQRGPDRPEGTEEGGGERDRGTSTRLVHGFLALIWDDLRSLFLFSYHRLRDLLLIAARIVELLGRRGWEALKYWWNLLQYWSQEIKNSAVSLLNTTAIAVAEGTDRIIEVLQRGFRAILHIPTRIRQGLERALL", "aminoacids": "MGYLYGKKQLPLYFVHQMLKHMRQRSIMFGQPMPVYPQTPAHRK*H*KM*QKHLTCGKMTW*SRCMRI*SVYGIKA*SHV*N*PHSVLL*IALIV*VIILIII*RKKEK*KTALSMSPQE*EIG*QKNMHFSIDLM*YQ*MKIVEILRANIG**IVTPQSLHKPVQRYPLSQFPYIFVPRLVLRF*SVEIRNSMEQENVEMSAQYNVHMELGQ*YQLNCC*TAV*QKKR**LDLPISRTMLKP**YS*INL*KLIVQDPTIIQEEVYT*DQGEHFMEQT**GI*DKRIVTLVGKIGMTL*KKIVIKLKEKFENKTIVFNQSSGGDPEIVMHSFNCGGEFFYCNTTQLFNSTWNGTDNWNGTESNNTITLPCRIKQIINLWQEVGRAMYAPPIQGQIRCSSNITGLLLVRDGGSNNSSNDTETFRPGGGDMRDNWRSELYKYKVVKIEPLGIAPTHAKRRVVQREKRAVGLGAFFLGFLGAAGSTMGAASVTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLALERYLKDQQLLGIWGCSGKLICTTNVPWNISWSPRWNRSLDEIWTNMTWRQWEKEIDNYTDTIYNLIELSQNQQEQNEQDLLALDKWASLWSWFDITQWLWYIKIFIMIVGGLIGLRIVFTILSIVNRVRQGYSPLSLQTLLPTQRGPDRPEGTEEGGGERDRGTSTRLVHGFLALIWDDLRSLFLFSYHRLRDLLLIAARIVELLGRRGWEALKYWWNLLQYWSQEIKNSAVSLLNTTAIAVAEGTDRIIEVLQRGFRAILHIPTRIRQGLERALL*DG*", "nucleotides": "ATGGGGTACCTGTATGGAAAGAAGCAACTACCACTCTATTTTGTGCATCAGATGCTAAAGCATATGAGACAGAGAAGCATAATGTTTGGGCAACCCATGCCTGTGTACCCACAGACCCCAGCCCACAGGAAGTAGCATTGAAAAATGTGACAGAAACATTTAACATGTGGAAAAATGACATGGTAGAGCAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGCCTAAAGCCATGTGTGAAACTAACCCCACTCTGTGTTACTTTAAATTGCACTGATAGTTTAAGTAATAATACTAATTATAATATAACGGAAAAAGGAGAAATAAAAAACTGCTCTTTCAATGTCACCACAGGAATAAGAGATAGGGTGACAAAAGAACATGCACTTTTCTATAGACTTGATGTAGTATCAATAGATGAAGATAGTGGAAATACTACGGGCAAATATAGGATGATAAATTGTAACACCTCAGTCATTACACAAGCCTGTCCAAAGATATCCTTTGAGCCAATTCCCATACATTTTTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAGAGATAAGAAATTCAATGGAACAGGAGAATGTAGAAATGTCAGCACAGTACAATGTACACATGGAATTAGGCCAGTAGTATCAACTCAACTGCTGCTGAACGGCAGTCTAGCAGAAGAAGAGATAGTAATTAGATCTGCCAATCTCTCGAACAATGCTAAAACCATAATAGTACAGCTGAATAAACCTGTAAAAATTAATTGTACAAGACCCAACAATAATACAAGAAGAAGTATACACATAGGACCAGGGAGAGCATTTTATGGAACAGACATAATAGGGGATATAAGACAAGCGCATTGTAACATTAGTGGGAAAGATTGGAATGACACTTTAAAAAAAGATAGTTATAAAATTAAAAGAAAAATTTGAGAATAAAACAATAGTCTTTAATCAATCCTCAGGAGGGGACCCAGAGATAGTGATGCATAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAATACAACACAGCTGTTTAATAGTACTTGGAATGGTACTGATAATTGGAATGGTACTGAATCAAATAACACTATCACACTCCCATGCAGAATAAAACAAATTATAAACTTGTGGCAGGAAGTAGGAAGAGCAATGTATGCTCCTCCCATCCAAGGGCAAATTAGATGTTCATCAAATATTACAGGGCTGCTGCTAGTAAGAGATGGTGGGAGCAACAATAGTAGTAATGATACAGAGACATTCAGGCCTGGAGGAGGAGATATGAGGGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTCAAAATTGAACCATTAGGAATAGCACCCACCCATGCAAAGAGAAGAGTGGTGCAAAGGGAAAAAAGAGCAGTGGGACTTGGAGCTTTCTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAGCAGCAAAACAATTTGCTGAGAGCTATTGAGGCGCAACAGCATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTCTGGAAAGATACCTAAAGGATCAACAGCTCCTGGGGATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTAATGTGCCCTGGAATATTAGTTGGAGCCCTAGATGGAATAGATCTCTAGATGAGATTTGGACTAACATGACCTGGAGGCAGTGGGAAAAGGAAATTGACAATTACACAGACACAATATATAACTTAATTGAACTATCACAGAACCAACAAGAACAGAATGAACAAGACTTATTGGCATTAGATAAGTGGGCAAGTTTGTGGAGTTGGTTTGACATTACACAGTGGCTATGGTATATAAAAATATTCATAATGATAGTAGGAGGCTTGATAGGTTTAAGAATAGTTTTTACTATACTGTCTATAGTGAATAGAGTTAGGCAGGGATACTCACCATTGTCATTGCAGACCCTCCTCCCAACCCAGAGGGGACCCGACAGGCCCGAAGGAACAGAAGAAGGAGGTGGAGAGAGAGACAGAGGCACATCCACGAGATTAGTGCATGGATTCTTAGCACTCATCTGGGACGACCTGCGGAGCCTGTTCCTCTTCAGTTACCACCGCTTGAGAGACTTACTCTTGATTGCGGCGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCACTGAAGTATTGGTGGAATCTCCTGCAGTATTGGAGTCAGGAAATAAAGAATAGTGCAGTTAGCTTGCTCAACACCACAGCAATAGCAGTAGCTGAGGGGACAGATAGGATTATAGAAGTACTACAAAGAGGCTTTAGAGCTATTCTCCACATACCTACACGAATAAGACAGGGCTTAGAAAGGGCTTTGCTATAAGATGGGTAA" @@ -3051,7 +3051,7 @@ "subtype_start": 8376, "subtype_end": 8469, "orientation": "forward", - "distance": 0.4866666666666659, + "distance": 0.439759036144578, "protein": "RPSSQPRGDPTGPKEQKKEVERETEAHPRD", "aminoacids": "RPSSQPRGDPTGPKEQKKEVERETEAHPRD*", "nucleotides": "AGACCCTCCTCCCAACCCAGAGGGGACCCGACAGGCCCGAAGGAACAGAAGAAGGAGGTGGAGAGAGAGACAGAGGCACATCCACGAGATTAG" @@ -3063,7 +3063,7 @@ "subtype_start": 8377, "subtype_end": 8653, "orientation": "forward", - "distance": 0.4285714285714286, + "distance": 0.40871934604904625, "protein": "DPPPNPEGTRQARRNRRRRWRERQRHIHEISAWILSTHLGRPAEPVPLQLPPLERLTLDCGEDCGTSGTQGVGSTEVLVESPAVLESGNKE", "aminoacids": "DPPPNPEGTRQARRNRRRRWRERQRHIHEISAWILSTHLGRPAEPVPLQLPPLERLTLDCGEDCGTSGTQGVGSTEVLVESPAVLESGNKE*", "nucleotides": "GACCCTCCTCCCAACCCAGAGGGGACCCGACAGGCCCGAAGGAACAGAAGAAGGAGGTGGAGAGAGAGACAGAGGCACATCCACGAGATTAGTGCATGGATTCTTAGCACTCATCTGGGACGACCTGCGGAGCCTGTTCCTCTTCAGTTACCACCGCTTGAGAGACTTACTCTTGATTGCGGCGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCACTGAAGTATTGGTGGAATCTCCTGCAGTATTGGAGTCAGGAAATAAAGAATAG" @@ -3075,7 +3075,7 @@ "subtype_start": 8796, "subtype_end": 9417, "orientation": "forward", - "distance": 0.7959349593495859, + "distance": 0.5621267799724368, "protein": "MGNKLSRGLRAGWPAIRERMRRARPVREPEPAAAGVGAASRDLERHGALTSSNTAATNADVACLEAQQEEEEVGFPVRPQVPLRPMTFKGALDISHFLKEKGGLDGLIYSKRRQDILDLWLYNTQGYFPDWQNYTPGPGVRFPLCFGWCFKLVPVDPDKVEEASVGENNCLLSPENLHGMEDEHREVLQWRFDSRLAFHHMARELHPEYFKDC", "aminoacids": "MGNKLSRGLRAGWPAIRERMRRARPVREPEPAAAGVGAASRDLERHGALTSSNTAATNADVACLEAQQEEEEVGFPVRPQVPLRPMTFKGALDISHFLKEKGGLDGLIYSKRRQDILDLWLYNTQGYFPDWQNYTPGPGVRFPLCFGWCFKLVPVDPDKVEEASVGENNCLLSPENLHGMEDEHREVLQWRFDSRLAFHHMARELHPEYFKDC*H*", "nucleotides": "ATGGGTAACAAGTTGTCAAGAGGGCTCAGGGCTGGATGGCCTGCCATAAGGGAGAGAATGAGACGAGCTAGGCCAGTAAGAGAGCCAGAGCCAGCAGCAGCTGGGGTGGGAGCAGCATCTCGAGACCTGGAAAGACATGGAGCACTTACAAGTAGCAATACAGCAGCTACCAATGCTGATGTTGCCTGCCTGGAAGCACAACAGGAGGAGGAAGAGGTGGGTTTTCCAGTCAGACCTCAGGTACCTTTAAGGCCAATGACTTTCAAGGGAGCTCTAGATATTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGATGGGCTAATTTACTCCAAAAGAAGACAAGACATCCTTGATCTGTGGCTCTACAACACACAAGGCTACTTCCCTGACTGGCAGAACTACACACCAGGGCCAGGAGTCAGATTTCCACTGTGTTTTGGATGGTGCTTCAAGCTAGTACCAGTTGATCCAGATAAGGTAGAAGAGGCCAGTGTAGGAGAGAACAACTGCTTGTTAAGCCCCGAAAACCTTCATGGAATGGAGGACGAACACAGAGAAGTATTGCAGTGGAGGTTTGACAGTCGCCTAGCATTTCATCACATGGCCCGAGAGCTGCATCCGGAATATTTCAAGGACTGCTGACACTGA" @@ -3089,7 +3089,7 @@ "subtype_start": 789, "subtype_end": 2292, "orientation": "forward", - "distance": 0.2571999999999999, + "distance": 0.2932056543547651, "protein": "MGARASILSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWTTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSANVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE", "aminoacids": "MGARASILSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWTTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSANVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE*R*", "nucleotides": "ATGGGTGCGAGAGCGTCAATATTAAGCGGGGGAAAATTAGATGCATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATTTAGTATGGGCAAGCAGGGAGCTAGAACGATTTGCCGTTAACCCTGGCCTGTTAGAAACATCAGAGGGATGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATTTAATGCAGTAGCAGTCCTCTATTGTGTACATCAAAGGATACAGGTACAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGTAGCAGCAGCTGACACTGACACAGGAAACAGCAGCCAAAATTACCCCATAGTGCAGAACCTCCAGGGGCAAATGGTACATCAGCCCCTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAAAAGGCCTTCAGCCCAGAAGTCATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGACGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCTTGGGATTAAATAAAATAGTAAGGATGTATAGCCCTACCAGTATTCTGGATATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAGAACTTTAAGAGCTGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATTCGAATCCAGATTGTAAGACTATTTTAAAAGCATTAGGACCAGCAGCAACACTAGAGGAAATGATGACAGCATGTCAAGGAGTGGGGGGACCAGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAAATTCAGCTAATGTAATGATGCAGAGAGGCAATTTTAGAAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACATCAAATGAAAGACTGTACAGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAG" @@ -3101,7 +3101,7 @@ "subtype_start": 2084, "subtype_end": 5096, "orientation": "forward", - "distance": 0.14755732801595212, + "distance": 0.1922427454342348, "protein": "FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSTGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED", "aminoacids": "FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSTGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*", "nucleotides": "TTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAGGGGGGCAATTTAAAGAAGCTTTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACCCATAGAAATCTGTGGACACAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGCTTGGTTGTACCTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTCAATAAGAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAATTCCCTTAGATAAAGAATTCAGGAAGTATACTGCATTTACCATACCTAGTACAAATAATGAGACACCAGGGATTAGGTATGAGTACAATGTGCTGCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGCAAAATCCAGATATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAACTGAGACAACATCTGTTAAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAGTGGACAGTACAGCCTATAATACTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTACGCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAGGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTTTAAGAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGCAATGGACAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTACAAAAGATAGCCACAGAAAGCATAGTAATATGGGGAAAAACTCCTAAATTTAGACTACCTATACAAAAAGAAACATGGGAGACATGGTGGGCAGAGTACTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAATTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACTAAATTAGGCAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAGGTTATCTCCCTAACGGACACAACAAATCAAAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATCAGAAGTAAACATAGTAACAGACTCACAATATACATTAGGAATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAATCAGATAATAGAGCAGTTAATAAAAAAGGAAAAAGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGACAAACTAGTCAGTACTGGAGTCAGGAGAGTACTATTTCTAGATGGAATAGATAAGGCCCAAGAAGACCATGAGAAATATCACAGTAATTGGAGAGCAATGGCTGGTGATTTTAATATACCCCCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCAAAAAGGAGAGGCCATGCATGGACAAGTAGATTGTAGTCCAGGAATATGGCAACTAGATTGTACACATCTAGAAGGGAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTCTCCTGAAACTAGCAGGGAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTAATGTGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCCATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTATAGTGCAGGGGAAAGAATAGTAGATATAATAGCAACAGACCTACAAACTAAAGAATTACAGAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGGAGAAAAGCAAAAATCATTAGGGATTATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG" @@ -3113,7 +3113,7 @@ "subtype_start": 5040, "subtype_end": 5619, "orientation": "forward", - "distance": 0.35416666666666674, + "distance": 0.36355859709153127, "protein": "MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH", "aminoacids": "MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH*", "nucleotides": "ATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATGTTTCAAAGAAAACTAAAGGATGGTTTTATAGACATCACTATGAAAGCACTCATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTGGTAGTAACAACATATTGGGGCCTGAATACAGGAGAAAGAGAATGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGAAAAAGGAAATATAGCACACAAGTTGACCCTAACCTAGCAGACCAACTAATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACATATAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGCTCTCTACAATACTTGGCACTAAAAGCATTAACAACACCAAAGAGAAGAAAGCCACCTTTACCTAGTGTTAGGAAACTGACAGAGGATAGATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAG" @@ -3125,7 +3125,7 @@ "subtype_start": 5558, "subtype_end": 5850, "orientation": "forward", - "distance": 0.4038461538461544, + "distance": 0.39444027047332864, "protein": "MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS", "aminoacids": "MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS*T", "nucleotides": "ATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAGAGCTTTTAGAGGAACTTAAGAATGAAGCGGTTAGACATTTTCCTAGGCCGTGGCTCCATGGCTTAGGACAACATATCTATGAAACTTATGGGGACACTTGGACAGGAGTGGAGGCCATAATAAGAACCCTGCAACAACTGCTGTTTATTCATTTCAGACTTGGGTGTCGACATAGCAGAATAGGCATTGTGCCACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACT" @@ -3137,7 +3137,7 @@ "subtype_start": 5830, "subtype_end": 6045, "orientation": "forward", - "distance": 0.29166666666666674, + "distance": 0.31992687385740404, "protein": "MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ", "aminoacids": "MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ*", "nucleotides": "ATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCACCCAGGAAGTCAGCCTAAAACTCCTTGTACTAACTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAAAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGTAA" @@ -3149,7 +3149,7 @@ "subtype_start": 5969, "subtype_end": 6045, "orientation": "forward", - "distance": 0.6346153846153846, + "distance": 0.5058246474555488, "protein": "MAGRSGDSDEELLKAVRLIKILYQSSK", "aminoacids": "MAGRSGDSDEELLKAVRLIKILYQSSK", "nucleotides": "ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGTAAG" @@ -3161,7 +3161,7 @@ "subtype_start": 6061, "subtype_end": 6310, "orientation": "forward", - "distance": 0.6865853658536587, + "distance": 0.5254806794847863, "protein": "MQPLHIAAIVGLIVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAEDSGNESEGDQEELSALMEMGHHAPGDVDDL", "aminoacids": "MQPLHIAAIVGLIVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAEDSGNESEGDQEELSALMEMGHHAPGDVDDL*", "nucleotides": "ATGCAACCTCTGCACATAGCAGCAATAGTAGGATTAATAGTAGCAGCAATAATAGCAATAGTTGTGTGGACCATAGTGTTAATAGAATATAGGAAAATATTAAGACAAAAAAGGATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAG" @@ -3173,7 +3173,7 @@ "subtype_start": 6224, "subtype_end": 8795, "orientation": "forward", - "distance": 0.49018691588785046, + "distance": 0.4415354827847462, "protein": "MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTPEAHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRNKMQKEYALFYKLDVVPIDNDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYENKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSETETFRPGGGDMKDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL", "aminoacids": "MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTPEAHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRNKMQKEYALFYKLDVVPIDNDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYENKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSETETFRPGGGDMKDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL*", "nucleotides": "ATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTGACAGTCTATTATGGGGTACCTGTATGGAAAGAAGCAAACACCACTCTATTTTGTGCATCGGATGCTAAAGCATATACCCCAGAGGCACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGGATTGGAAAATGTGACAGAAAATTTTAACATGTGGAAAAATAACATGGTAGAACAGATGCATGAGGATGTAATCAATTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCACTAATCTGAATGTTACTAATACCAATAGCAGTAGTGAGGAGGGAAAGATGGCGGAAGAAATGAGAAACTGCTCTTTCAATATCACCACAAAAATAAGAAATAAGATGCAGAAGGAATATGCACTTTTTTATAAACTTGATGTAGTACCAATAGATAATGATAATACAAGTTATACATTGATAAATTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCTATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAGGATAAGAAGTTCAATGGATCAGGACCATGTAAAAATGTCAGCACAGTACAATGTACACATGGAATTAAGCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTTTAGCAGAAGAAGAGGTAGTAATTAGATCTGAAAATTTCACGAACAATGCTAAAACCATAATAGTACATCTGAAGGAACCTATACAAATTAATTGTACAAGACCCAACAACAATACAATGAAAAGTATCCCTCTAGGACCAGGAAGAGCATTCTATGCAACAGGAGCCATAATAGGAGATATAAGACAAGCACATTGTAACCTTAGTAGAAAAGCATGGAATAATACTTTAAAACAGGTAGTTGAAAAATTAAAAGAACAATATGAGAATAAAACAATAATCTTTAATCACTCCTCAGGAGGGGACCCAGAAATTATAATGCATACTTTTAATTGTGGAGGGGAATTTTTCTATTGTAATACAACACAGCTGTTTAATAGTACTTGGAATAGTACTTGGACTGGGAATGCTACCGAATTAGATGGAAACATCACACTCCCATGCAGAATAAAACAGATTATAAACAGGTGGCAAGAAGTAGGAAAAGCAATGTATGCCCCTCCCATTAGAGGAAAAATTAGATGTTCATCAAATATTACAGGGTTACTATTAGTAAGAGATGGTGGTAACACGAGCGAGACTGAGACCTTCAGACCTGGAGGAGGAGATATGAAGGACAATTGGAGGAGTGAATTATATAAATATAAAGTAGTAAAAATTGAGCCATTAGGAGTAGCACCCACCAGGGCAAAGAGAAGAGTGGTGCAAAGAGAAAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAAGCCAGGCTGTTATTGTCTGGTATAGTGCAACAGCAAAACAATTTGCTGAGAGCTATTGAGGCGCAACAACATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTACAGGATCAACAGCGCCTGGGAATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCCTGGAATGCTAGTTGGAGTAATAAATCTCTGAATCAGATTTGGGATAACATGACCTGGATGGAGTGGGAAAGAGAAATTAACAATTACACAGACACAATATACACCTTAATTGAAAAGGCGCAGAACCAGCAGGAAAAGAATGAACAAGAATTATTGGAATTGGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAAATGGCTGTGGTACATAAAATTATTCATAATGATAGTAGGAGGATTGATAGGTTTAAGAATAGTTTTTGCTGTACTTGCTATAGTAAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGCCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAGCTTATTCAATGTCACAGCCATCGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAAGAGCTTGTAGAGCTCTTCTCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCATTGTTATAA" @@ -3185,7 +3185,7 @@ "subtype_start": 8376, "subtype_end": 8469, "orientation": "forward", - "distance": 0.28666666666666596, + "distance": 0.3161764705882347, "protein": "RPTSQPRGDPTGPKESKKKVEKETETDQFD", "aminoacids": "RPTSQPRGDPTGPKESKKKVEKETETDQFD**", "nucleotides": "AGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGA" @@ -3197,7 +3197,7 @@ "subtype_start": 8377, "subtype_end": 8653, "orientation": "forward", - "distance": 0.39560439560439553, + "distance": 0.38952607660679506, "protein": "DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVPLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE", "aminoacids": "DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVPLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE*CY*", "nucleotides": "GACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGCCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAG" @@ -3209,7 +3209,7 @@ "subtype_start": 8796, "subtype_end": 9417, "orientation": "forward", - "distance": 0.6162601626016186, + "distance": 0.49848743916874616, "protein": "MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPTSLHGMEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC", "aminoacids": "MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPTSLHGMEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC*H*", "nucleotides": "ATGGGGGGCAAGTGGTCAAAAAGTAGTGGGGGTGGATGGCCTGCTGTAAGGGAAAGAATGAGACGAACTGAGCCAGCAGCAGAAGGGGTGGGAGCAGTATCTCGAGACCTGGAAAGACATGGAGCAGTCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGCGCCTGGCTGGAAGCACAAGAAGAGGACAGTGAAGTGGGTTTTCCAGTCAGACCTCAGGTGCCTTTAAGACCAATGACTTTCAAAGGAGCTCTCGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCCCAAAAAAGACAAGATATCCTTGACCTGTGGGTCTACAACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGACCAGATATCCACTGACCTTTGGGTGGTGTTTCAAGCTAGTACCAGTGGAGCCAGAAGAGGCCAATCAAGGAGAGAACAACTGCTTGTTACACCCTACGAGCCTGCATGGGATGGAGGACCCGGAAAAAGAAGTATTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCACATGGCCCGAGAGAAGCATCCGGAGTACTACAAAGACTGCTGACATTGA" @@ -3223,7 +3223,7 @@ "subtype_start": 789, "subtype_end": 2292, "orientation": "forward", - "distance": 0.24380000000000024, + "distance": 0.28224125955082213, "protein": "MGARASVLSGGELDRWEKIYLRPGGKKKYRLKHIVWASRELERFAVNPGLLESSEGCRQILGQLQPALQTGSEELRSLYNTVAVLYCVHPRINVKDTKEALDKIEEEQNKSKKKAQQAAADTGNSSNSQVSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINAEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHNPPIPVGDIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFYKTLRAEQASQDVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTKSASIMVQGGNFRNQRRNVKCFNCGKEGHTAKNCRAPRKKGCWKCGREGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPAESFRFGEEATAPPQKQETKDQELYPLASLRSLFGNDP", "aminoacids": "MGARASVLSGGELDRWEKIYLRPGGKKKYRLKHIVWASRELERFAVNPGLLESSEGCRQILGQLQPALQTGSEELRSLYNTVAVLYCVHPRINVKDTKEALDKIEEEQNKSKKKAQQAAADTGNSSNSQVSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINAEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHNPPIPVGDIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFYKTLRAEQASQDVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTKSASIMVQGGNFRNQRRNVKCFNCGKEGHTAKNCRAPRKKGCWKCGREGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPAESFRFGEEATAPPQKQETKDQELYPLASLRSLFGNDP*YQ*K*", "nucleotides": "ATGGGTGCGAGAGCGTCAGTATTAAGCGGCGGAGAATTAGATAGATGGGAAAAAATTTACCTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTCAACCCTGGCCTGTTAGAGTCATCAGAAGGCTGCAGGCAAATTCTGGGACAGCTACAACCAGCCCTTCAGACAGGATCAGAAGAACTTAGATCATTATATAATACAGTAGCAGTCCTCTATTGCGTACATCCAAGGATAAATGTAAAAGACACCAAAGAAGCTCTAGACAAAATAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAACAAGCAGCAGCTGACACAGGAAACAGCAGCAACAGCCAGGTCAGCCAAAATTACCCTATAGTGCAGAACCTACAGGGGCAAATGGTACATCAACCCTTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAATAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCACTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAGATGTTAAAAGAAACCATCAATGCTGAGGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGCCCTATTGCACCAGGCCAGATGAGGGAACCAAGGGGAAGTGACATAGCAGGAACCACTAGTACCCTTCAGGAACAAATAGGATGGATGACACATAATCCACCTATCCCAGTAGGAGATATCTATAAAAGATGGATAATCCTGGGGTTAAATAAAATAGTAAGAATGTATAGCCCTGTCAGCATTTTGGACATAAGACAAGGACCAAAGGAACCCTTTAGGGATTATGTAGACCGGTTCTATAAAACTCTAAGGGCTGAGCAAGCGTCACAGGATGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAATCCAGATTGTAAGACCATTTTAAAAGCATTAGGACCAGCAGCTACATTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGGGGACCCGGCCACAAGGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAACAAAATCAGCCTCCATAATGGTGCAGGGAGGCAATTTTAGGAACCAAAGAAGGAATGTTAAGTGTTTCAATTGTGGCAAAGAAGGACACACAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAGGGAAGGACACCAAATGAAAGATTGTACTGAGAGACAGGCTAATTTTTTAGGGAAGATTTGGCCTTCCCACAAGGGAAGGCCAGGGAATTTTCTCCAGAGCAGACCAGAGCCAACAGCCCCGCCAGCAGAGAGCTTCAGGTTTGGGGAAGAGGCAACAGCTCCCCCTCAGAAGCAGGAGACGAAGGACCAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCATAATATCAATAAAAATAG" @@ -3235,7 +3235,7 @@ "subtype_start": 2084, "subtype_end": 5096, "orientation": "forward", - "distance": 0.20438683948155534, + "distance": 0.24792588830031692, "protein": "FFREDLAFPQGKAREFSPEQTRANSPASRELQVWGRGNSSPSEAGDEGPGTVSFSFPQITLWQRPIISIKIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPRVKQWPLTEEKIKALIEICAEMEKEGKITKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNEAPGVRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKENPDIVIYQYMDDLYVGSDLEIEQHRTKIEELRQHLLGWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPDKDSWTINDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTEVVPLTEEAELELAENREILKEPVHGAYYDPSKDLIAEVQKQGGDQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKIALEAIVIWGKTPKFKLPIQKETWEMWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVVSLMDTTNQRTELHAIHLALQDSGSTVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHKGIGGNEQVDKLVSSGIRKVLFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEPMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIAAETGQETAYFILKLAGRWPVKIIHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDSREPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKILRDYGKQMAGDDCVASRQDED", "aminoacids": "FFREDLAFPQGKAREFSPEQTRANSPASRELQVWGRGNSSPSEAGDEGPGTVSFSFPQITLWQRPIISIKIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPRVKQWPLTEEKIKALIEICAEMEKEGKITKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNEAPGVRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKENPDIVIYQYMDDLYVGSDLEIEQHRTKIEELRQHLLGWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPDKDSWTINDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTEVVPLTEEAELELAENREILKEPVHGAYYDPSKDLIAEVQKQGGDQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKIALEAIVIWGKTPKFKLPIQKETWEMWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVVSLMDTTNQRTELHAIHLALQDSGSTVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKIYLAWVPAHKGIGGNEQVDKLVSSGIRKVLFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEPMHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIAAETGQETAYFILKLAGRWPVKIIHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQISKIQNFRVYYRDSREPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKILRDYGKQMAGDDCVASRQDED*", "nucleotides": "TTTTTTAGGGAAGATTTGGCCTTCCCACAAGGGAAGGCCAGGGAATTTTCTCCAGAGCAGACCAGAGCCAACAGCCCCGCCAGCAGAGAGCTTCAGGTTTGGGGAAGAGGCAACAGCTCCCCCTCAGAAGCAGGAGACGAAGGACCAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCATAATATCAATAAAAATAGGAGGGCAACTAAAAGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAATTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACCCATAGAAATTTGTGGACATAAAGCTATAGGTACAGTATTAATAGGACCTACACCAGTCAACATAATTGGAAGAAATCTGTTGACCCAGCTTGGTTGCACTTTAAATTTTCCCATCAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAGAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAGGCATTAATAGAAATTTGTGCAGAAATGGAAAAGGAAGGGAAAATTACAAAAATTGGGCCTGAGAATCCATATAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCCGAGAACTTAATAAGAGAACACAAGACTTCTGGGAAGTTCAACTAGGAATACCACATCCCGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTAGATGTGGGTGATGCATATTTTTCAGTTCCTTTAGACAAAGACTTCAGAAAGTATACTGCATTTACCATACCCAGTATAAACAATGAGGCACCAGGAGTTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGGAAAATCCAGACATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGATTTAGAAATAGAGCAGCACAGAACAAAAATAGAGGAACTGAGACAACATCTGTTGGGGTGGGGACTCACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTTCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATACAGCTGCCAGACAAAGACAGCTGGACTATCAATGACATACAGAAGTTAGTGGGAAAGTTGAATTGGGCAAGCCAAATCTATCCAGGGATTAAAGTAAAGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAAGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAGATTCTAAAAGAACCAGTACATGGAGCATATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGGGGAGACCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGGAAATATGCAAGAACGAGGGGTGCCCACACTAATGATGTAAAACAGTTAACAGAGGCAGTGCAAAAAATAGCCCTAGAAGCCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTACCTATACAAAAGGAAACATGGGAAATGTGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAATTTGTCAATACCCCTCCCTTAGTAAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAGACTAAATTAGGAAAAGCAGGGTATGTTACGGACAGAGGAAGACAAAAGGTTGTCTCCCTAATGGACACAACAAATCAGAGGACTGAGTTACACGCTATTCATCTAGCTTTGCAGGATTCAGGATCAACAGTAAACATAGTGACAGACTCACAATATGCCTTAGGGATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAGTCAAATAATAGAGCAGCTAATAAAAAAGGAAAAGATTTACCTGGCATGGGTCCCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTAGTGGAATCAGAAAAGTACTATTTCTGGATGGAATAGATAAGGCCCAAGAAGAACATGAAAAATATCACAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAGTGTCAGTTAAAAGGAGAACCTATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAACTGGATTGTACACATTTAGAAGGAAAAATTATCCTGGTAGCAGTTCATGTAGCCAGTGGATACATAGAAGCAGAAGTTATTGCAGCAGAAACAGGGCAGGAAACAGCATACTTTATCTTAAAATTGGCAGGAAGATGGCCAGTAAAAATAATACATACAGACAATGGCAGCAATTTCACCAGCACTACGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGTATTCCCTACAATCCTCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAATAGACATAATAGCAACAGACATACAAACTAAAGAACTACAAAAACAAATTTCAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGAACCACTTTGGAAAGGACCAGCAAAGCTCCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATCCTTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG" @@ -3247,7 +3247,7 @@ "subtype_start": 5040, "subtype_end": 5619, "orientation": "forward", - "distance": 0.38020833333333326, + "distance": 0.38012913976254936, "protein": "MENRWQVMIVWQVDRMRIRTWNSLVKHHMHISKKAQRWVYRHHYESHNPKTSSEVHIPLGEARLVIKTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPGLADQLIHLYYFDCFSESAIRNAILGHRVSPRCEYQAGHNKVGSLQYLALTALITPKRRKPPLPSVTKLTEDRWNKSQRTKGHKGSHTMNGH", "aminoacids": "MENRWQVMIVWQVDRMRIRTWNSLVKHHMHISKKAQRWVYRHHYESHNPKTSSEVHIPLGEARLVIKTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPGLADQLIHLYYFDCFSESAIRNAILGHRVSPRCEYQAGHNKVGSLQYLALTALITPKRRKPPLPSVTKLTEDRWNKSQRTKGHKGSHTMNGH*", "nucleotides": "ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATATTTCAAAGAAAGCTCAGAGATGGGTTTACAGACATCACTATGAAAGCCATAATCCAAAAACAAGTTCAGAAGTACACATCCCATTAGGGGAAGCAAGATTGGTAATAAAAACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCATTTGGGCCAGGGAGTATCCATAGAATGGAGGAAAAGGAGATATAGCACACAAGTAGACCCTGGCCTGGCAGACCAACTAATTCACCTGTATTATTTTGATTGTTTTTCAGAATCTGCTATAAGGAATGCCATATTAGGACATAGAGTTAGTCCTAGGTGTGAATATCAGGCAGGACATAACAAGGTAGGATCCCTACAATACTTGGCATTAACAGCATTAATAACACCAAAAAGGAGAAAGCCACCTTTGCCCAGTGTTACAAAATTAACAGAGGACAGATGGAACAAGTCCCAGAGGACCAAGGGCCACAAAGGGAGCCATACAATGAATGGACATTAG" @@ -3259,7 +3259,7 @@ "subtype_start": 5558, "subtype_end": 5850, "orientation": "forward", - "distance": 0.4807692307692313, + "distance": 0.43675751222921066, "protein": "MEQVPEDQGPQREPYNEWTLELLEELKSEAVRHFPRPWLHSLGQYIYETYGDTWAGVEAIIRTLQQLLFIHFRIGCQHSRIGIIRQRRARNGASRS", "aminoacids": "MEQVPEDQGPQREPYNEWTLELLEELKSEAVRHFPRPWLHSLGQYIYETYGDTWAGVEAIIRTLQQLLFIHFRIGCQHSRIGIIRQRRARNGASRS*L", "nucleotides": "ATGGAACAAGTCCCAGAGGACCAAGGGCCACAAAGGGAGCCATACAATGAATGGACATTAGAGCTCTTAGAAGAACTTAAGAGTGAAGCTGTTAGGCATTTTCCTAGACCATGGCTTCATAGCTTAGGACAATATATCTATGAAACTTATGGAGATACTTGGGCAGGGGTGGAAGCCATAATAAGAACCCTGCAACAACTGTTGTTCATTCATTTCAGAATTGGGTGTCAACATAGCAGGATAGGAATTATTCGACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGCTT" @@ -3271,7 +3271,7 @@ "subtype_start": 5830, "subtype_end": 6045, "orientation": "forward", - "distance": 0.5972222222222223, + "distance": 0.49064354176175273, "protein": "MEPVDPSLEPWKHPGSQPMTACNNCYCKRCCFHCQVCFTRKGLGISYGRKKRRQRRRASHSSQNHQAALPEQ", "aminoacids": "MEPVDPSLEPWKHPGSQPMTACNNCYCKRCCFHCQVCFTRKGLGISYGRKKRRQRRRASHSSQNHQAALPEQ*", "nucleotides": "ATGGAGCCAGTAGATCCTAGCTTAGAGCCCTGGAAACATCCAGGAAGTCAACCTATGACTGCTTGTAACAATTGCTATTGTAAACGGTGTTGCTTTCATTGCCAAGTTTGCTTCACAAGAAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTTCTCACAGCAGTCAGAATCATCAAGCGGCTCTACCAGAGCAGTAA" @@ -3283,7 +3283,7 @@ "subtype_start": 5969, "subtype_end": 6045, "orientation": "forward", - "distance": 0.6538461538461537, + "distance": 0.5132850241545894, "protein": "MAGRSGDSDEELLTAVRIIKRLYQSS", "aminoacids": "MAGRSGDSDEELLTAVRIIKRLYQSS", "nucleotides": "ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTTCTCACAGCAGTCAGAATCATCAAGCGGCTCTACCAGAGCAGT" @@ -3295,7 +3295,7 @@ "subtype_start": 6061, "subtype_end": 6310, "orientation": "forward", - "distance": 0.751219512195122, + "distance": 0.5478477410174315, "protein": "MHALEIAAIVGLVVAAIIAIVVWSIVLIEYRKILRQRKIDRLIDRIRERAEDSGNESDGDQEELSALVEMGHLVPWDGDDM", "aminoacids": "MHALEIAAIVGLVVAAIIAIVVWSIVLIEYRKILRQRKIDRLIDRIRERAEDSGNESDGDQEELSALVEMGHLVPWDGDDM*", "nucleotides": "ATGCATGCCTTAGAAATAGCAGCAATAGTAGGATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGTCTATAGTATTAATAGAATATAGGAAAATTTTAAGACAAAGGAAAATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAAAGTGACGGGGACCAGGAGGAGTTATCAGCACTTGTGGAGATGGGGCATCTTGTTCCTTGGGATGGTGATGATATGTAG" @@ -3307,7 +3307,7 @@ "subtype_start": 6224, "subtype_end": 8795, "orientation": "forward", - "distance": 0.5663551401869167, + "distance": 0.4773908933354344, "protein": "MKVTGTRRSYQHLWRWGILFLGMVMICSANNLWVTVYYGVPVWKEATTTLFCASDAKAYETEKHNVWATHACVPTDPSPQEVALENVTETFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDNLNLNRPNNNTCSNNTNYNITEKGEIKNCSFNVTTGIRDRVTKEHALFYKLDVVPIDEGSGNTTGKYRMINCNTSVITQACPKVSFEPIPIHFCAPAGFAILKCKDKKFNGTGECRNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVIRSANLSNNAKTIIVQLNKSVKINCTRPNNNTRRSIHIGPGRAFYGTDIIGDIRQAHCNISGKDWNDTLKQIVIKLKEKFENKTIVFTQSSGGDPEIVMHSFNCGGEFFYCNTTQLFNSTWNNSTWNGTDNWNGTESNSTITLPCRIKQIINLWQEVGRAMYAPPIQGQIRCSSNITGLLLVRDGGSNNSSNDTETFRPGGGDMRDNWRSELYKYKVVKIEPLGIAPTHAKRRVVQREKRAIGLGAFFLGFLGAAGSTMGAASVTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLALERYLKDQQLLGIWGCSGKLICTTNVPWNISWSPRWNRSLDEIWTNMTWKQWEKEIDNYTDIIYNLIEQSQNQQEQNEQDLLALDKWASLWNWFDITQWLWYIKIFIMIVGGLIGLRIVFTILSIVNRVRQGYSPLSLQTLLPTQRGPDRPEGTEEGGGERDRGTSTRLVHGFLALIWDDLRSLFLFSYHRLRDLLLIAARIVELLGRRGWEALKYWWNLLQYWSQEIKNSAVSLLNTTAIAVAEGTDRIIEVLQRGFRAILHIPTRIRQGLERALL", "aminoacids": "MKVTGTRRSYQHLWRWGILFLGMVMICSANNLWVTVYYGVPVWKEATTTLFCASDAKAYETEKHNVWATHACVPTDPSPQEVALENVTETFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDNLNLNRPNNNTCSNNTNYNITEKGEIKNCSFNVTTGIRDRVTKEHALFYKLDVVPIDEGSGNTTGKYRMINCNTSVITQACPKVSFEPIPIHFCAPAGFAILKCKDKKFNGTGECRNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVIRSANLSNNAKTIIVQLNKSVKINCTRPNNNTRRSIHIGPGRAFYGTDIIGDIRQAHCNISGKDWNDTLKQIVIKLKEKFENKTIVFTQSSGGDPEIVMHSFNCGGEFFYCNTTQLFNSTWNNSTWNGTDNWNGTESNSTITLPCRIKQIINLWQEVGRAMYAPPIQGQIRCSSNITGLLLVRDGGSNNSSNDTETFRPGGGDMRDNWRSELYKYKVVKIEPLGIAPTHAKRRVVQREKRAIGLGAFFLGFLGAAGSTMGAASVTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLALERYLKDQQLLGIWGCSGKLICTTNVPWNISWSPRWNRSLDEIWTNMTWKQWEKEIDNYTDIIYNLIEQSQNQQEQNEQDLLALDKWASLWNWFDITQWLWYIKIFIMIVGGLIGLRIVFTILSIVNRVRQGYSPLSLQTLLPTQRGPDRPEGTEEGGGERDRGTSTRLVHGFLALIWDDLRSLFLFSYHRLRDLLLIAARIVELLGRRGWEALKYWWNLLQYWSQEIKNSAVSLLNTTAIAVAEGTDRIIEVLQRGFRAILHIPTRIRQGLERALL*", "nucleotides": "ATGAAAGTGACGGGGACCAGGAGGAGTTATCAGCACTTGTGGAGATGGGGCATCTTGTTCCTTGGGATGGTGATGATATGTAGTGCCAACAACTTGTGGGTCACAGTCTATTATGGGGTACCTGTATGGAAAGAAGCAACTACCACTCTATTTTGTGCATCAGATGCTAAAGCATATGAGACAGAGAAGCATAATGTTTGGGCAACCCATGCCTGTGTACCCACAGACCCCAGCCCACAGGAAGTAGCATTGGAAAATGTGACAGAAACATTTAACATGTGGAAAAATGACATGGTAGAGCAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGCCTAAAGCCATGTGTGAAACTAACCCCACTCTGTGTTACTTTAAATTGCACTGATAATTTAAATCTAAATCGCCCTAACAATAATACTTGTAGTAATAATACTAATTATAATATAACGGAAAAAGGAGAAATAAAAAACTGCTCTTTCAATGTCACCACAGGAATAAGAGATAGGGTGACAAAAGAACATGCACTTTTCTATAAACTTGATGTAGTACCAATAGATGAAGGTAGTGGAAATACTACGGGCAAATATAGGATGATAAATTGTAACACCTCAGTCATTACACAAGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTTTTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAAGATAAGAAATTCAATGGAACAGGAGAATGTAGAAATGTCAGCACAGTACAATGTACACATGGAATTAGGCCAGTAGTATCAACTCAACTGCTGCTGAACGGCAGTCTAGCAGAAGAAGAGATAGTAATTAGATCTGCCAATCTCTCGAACAATGCTAAAACCATAATAGTACAGCTGAATAAATCTGTAAAAATTAATTGTACAAGACCCAACAATAATACAAGAAGAAGTATACACATAGGACCAGGGAGGGCATTTTATGGAACAGACATAATAGGAGATATAAGACAAGCGCATTGTAACATTAGTGGGAAAGATTGGAATGACACTTTAAAACAGATAGTTATAAAATTAAAAGAAAAATTTGAGAATAAAACAATAGTCTTTACTCAATCCTCAGGAGGGGACCCAGAGATAGTGATGCATAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAATACAACACAGCTGTTTAATAGTACTTGGAATAATAGTACTTGGAATGGTACTGACAATTGGAATGGTACTGAATCAAATAGCACTATCACACTCCCATGCAGAATAAAACAAATTATAAACTTGTGGCAGGAAGTAGGAAGAGCAATGTATGCCCCTCCCATCCAAGGGCAAATTAGATGTTCATCAAATATTACAGGGCTGCTGCTAGTAAGAGATGGTGGGAGCAACAATAGTAGTAATGATACAGAGACCTTCAGGCCTGGAGGAGGAGATATGAGGGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTCAAAATTGAACCATTAGGAATAGCACCCACCCATGCAAAGAGAAGAGTGGTGCAAAGGGAAAAAAGAGCAATAGGACTTGGAGCTTTCTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAGCAGCAAAACAATTTGCTGAGAGCTATTGAGGCGCAACAGCATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTTTGGAAAGATACCTAAAGGATCAACAGCTCCTGGGGATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTAATGTGCCCTGGAATATTAGTTGGAGCCCTAGATGGAATAGATCTCTAGATGAGATTTGGACTAACATGACCTGGAAGCAGTGGGAAAAGGAAATTGACAATTACACAGACATAATATATAACCTAATTGAACAATCACAGAACCAACAAGAACAGAATGAACAAGACTTATTGGCATTAGATAAGTGGGCAAGTTTGTGGAATTGGTTTGACATTACACAGTGGCTATGGTATATAAAAATATTCATAATGATAGTAGGAGGCTTGATAGGTTTAAGAATAGTTTTTACTATACTGTCTATAGTGAATAGAGTTAGGCAGGGATACTCACCATTGTCATTGCAGACCCTCCTCCCAACCCAGAGGGGACCCGACAGGCCCGAAGGAACAGAAGAAGGAGGTGGAGAGAGAGACAGAGGCACATCCACGAGATTAGTGCATGGATTCTTAGCACTCATCTGGGACGACCTGCGGAGCCTGTTCCTCTTCAGTTACCACCGCTTGAGAGACTTACTCTTGATTGCGGCGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCACTGAAGTATTGGTGGAATCTCCTGCAGTATTGGAGTCAGGAAATAAAGAATAGTGCAGTTAGCTTGCTCAACACCACAGCAATAGCAGTAGCTGAGGGGACAGATAGGATTATAGAAGTATTACAAAGAGGCTTTAGAGCTATTCTCCACATACCTACACGAATAAGACAGGGCTTAGAAAGGGCTTTGCTATAA" @@ -3319,7 +3319,7 @@ "subtype_start": 8376, "subtype_end": 8469, "orientation": "forward", - "distance": 0.4866666666666659, + "distance": 0.439759036144578, "protein": "RPSSQPRGDPTGPKEQKKEVERETEAHPRD", "aminoacids": "RPSSQPRGDPTGPKEQKKEVERETEAHPRD*", "nucleotides": "AGACCCTCCTCCCAACCCAGAGGGGACCCGACAGGCCCGAAGGAACAGAAGAAGGAGGTGGAGAGAGAGACAGAGGCACATCCACGAGATTAG" @@ -3331,7 +3331,7 @@ "subtype_start": 8377, "subtype_end": 8653, "orientation": "forward", - "distance": 0.4285714285714286, + "distance": 0.40871934604904625, "protein": "DPPPNPEGTRQARRNRRRRWRERQRHIHEISAWILSTHLGRPAEPVPLQLPPLERLTLDCGEDCGTSGTQGVGSTEVLVESPAVLESGNKE", "aminoacids": "DPPPNPEGTRQARRNRRRRWRERQRHIHEISAWILSTHLGRPAEPVPLQLPPLERLTLDCGEDCGTSGTQGVGSTEVLVESPAVLESGNKE*", "nucleotides": "GACCCTCCTCCCAACCCAGAGGGGACCCGACAGGCCCGAAGGAACAGAAGAAGGAGGTGGAGAGAGAGACAGAGGCACATCCACGAGATTAGTGCATGGATTCTTAGCACTCATCTGGGACGACCTGCGGAGCCTGTTCCTCTTCAGTTACCACCGCTTGAGAGACTTACTCTTGATTGCGGCGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCACTGAAGTATTGGTGGAATCTCCTGCAGTATTGGAGTCAGGAAATAAAGAATAG" @@ -3343,7 +3343,7 @@ "subtype_start": 8796, "subtype_end": 9417, "orientation": "forward", - "distance": 0.7471544715447078, + "distance": 0.5465033301617482, "protein": "MGNKLSRGLRAGWPTIRERMRRARPVREPEPAAAGVGAASRDLERHGALTSSNTAATNADVACLEAQQEEEEVGFPVRPQVPLRPMTYKGALDISHFLKEKGGLDGLIYSKRRQDILDLWLYNTQGYFPDWQNYTPGPGVRFPLCFGWCFKLVPVDPDKVEEASVGENNCLLSPENLHGMEDEHREVLQWRFDSRLAFHHVARELHPEYYKDC", "aminoacids": "MGNKLSRGLRAGWPTIRERMRRARPVREPEPAAAGVGAASRDLERHGALTSSNTAATNADVACLEAQQEEEEVGFPVRPQVPLRPMTYKGALDISHFLKEKGGLDGLIYSKRRQDILDLWLYNTQGYFPDWQNYTPGPGVRFPLCFGWCFKLVPVDPDKVEEASVGENNCLLSPENLHGMEDEHREVLQWRFDSRLAFHHVARELHPEYYKDC*H*", "nucleotides": "ATGGGTAACAAGTTGTCAAGAGGGCTCAGGGCTGGATGGCCTACCATAAGGGAGAGAATGAGACGAGCTAGGCCAGTAAGAGAGCCAGAGCCAGCAGCAGCTGGGGTGGGAGCAGCATCTCGAGACCTGGAAAGACATGGAGCACTTACAAGTAGCAATACAGCAGCTACCAATGCTGATGTTGCCTGCCTGGAAGCACAACAGGAGGAGGAAGAGGTGGGTTTTCCAGTCAGACCTCAGGTACCTTTAAGGCCAATGACTTACAAGGGAGCTCTAGATATTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGATGGGCTAATTTACTCCAAAAGAAGACAAGACATCCTTGATCTGTGGCTCTACAACACACAAGGCTACTTCCCTGACTGGCAGAACTACACACCAGGGCCAGGAGTCAGATTTCCACTGTGTTTTGGATGGTGCTTCAAGCTAGTACCAGTTGATCCAGATAAGGTAGAAGAGGCCAGTGTAGGAGAGAACAACTGCTTGTTAAGCCCCGAGAACCTGCATGGAATGGAGGACGAACACAGAGAAGTATTGCAGTGGAGGTTTGACAGCCGCCTAGCATTTCATCACGTGGCCCGAGAGCTGCATCCGGAGTATTACAAGGACTGCTGACACTGA" @@ -3357,7 +3357,7 @@ "subtype_start": 789, "subtype_end": 2292, "orientation": "forward", - "distance": 1.495, + "distance": 0.706855791962175, "protein": "MTETLLVQNANPDCKTILKALRPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSNIIMMQRGNFRNQRKTVKCFNCGKERHIARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLRKIWPSSKGRPRNFLQSRPEPTAPPEESFRFREETATPPQKQEPVDKEVYPLASLKSLFGNDPSSQ", "aminoacids": "MLQAIPGLRVGPAGSHPFALTSLSASCCHQSQSPGCSGATARTGT*KRK*NQRSSLDAGLGLLKRARQEARGGDW*VRQF*LAEARRREISARASVLSGGELDKWEKIRLRPGGKKRYKLKHIVWASRELERFAVNPGLLETTEGCKQILEQLQPSLPTGSEELRSLFNTVATLYCVHKRIEVQDTKEALEKIEEEQNKSKKKAQQAVADKGSTSQVSQNYPIVQNLQGQMVHQAISPRTLNA*VKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAE*DRVHPVHAGPVAPGQMREPRGSDIAGTTSTLQEQIA*MTSNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYKVLRAEQASQDVKN*MTETLLVQNANPDCKTILKALRPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSNIIMMQRGNFRNQRKTVKCFNCGKERHIARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLRKIWPSSKGRPRNFLQSRPEPTAPPEESFRFREETATPPQKQEPVDKEVYPLASLKSLFGNDPSSQ*", "nucleotides": "ATGCTTCAGGCCATCCCTGGTTTGAGGGTGGGTCCCGCCGGGTCCCACCCCTTTGCACTCACGAGCCTGTCTGCCTCCTGCTGCCATCAATCACAGAGCCCAGGCTGTTCGGGCGCCACTGCCCGAACAGGGACCTGAAAGCGAAAGTAGAACCAGAGGAGCTCTCTCGACGCAGGACTCGGCTTGCTGAAGCGCGCACGGCAAGAGGCGAGAGGCGGCGACTGGTGAGTACGCCAATTTTGACTAGCAGAGGCTAGAAGGAGAGAGATAAGTGCGAGAGCGTCTGTATTAAGCGGGGGAGAATTAGATAAATGGGAAAAAATTCGGTTAAGGCCAGGAGGAAAGAAAAGATATAAATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTTAACCCCGGCCTTTTAGAAACAACAGAAGGATGTAAACAAATACTGGAACAGCTGCAACCATCCCTTCCGACAGGATCAGAAGAACTTAGATCATTATTTAATACAGTAGCAACCCTCTATTGTGTGCATAAGAGAATAGAGGTACAAGACACCAAGGAAGCCTTAGAAAAGATAGAAGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAGGCAGTAGCTGACAAAGGAAGTACCAGCCAGGTCAGCCAAAATTACCCGATAGTGCAGAACCTCCAGGGGCAAATGGTACATCAGGCCATATCGCCTAGAACTTTAAATGCATAGGTGAAAGTAGTAGAAGAGAAGGCCTTTAGCCCAGAGGTAATACCCATGTTTTCAGCATTATCGGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATCAATGAGGAGGCTGCAGAATAAGATAGAGTGCATCCAGTGCATGCAGGGCCTGTTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATAGATGACAAGTAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCCTAGGATTAAATAAGATAGTAAGAATGTATAGCCCTACCAGCATTTTGGACATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAAAGTCCTAAGAGCCGAGCAAGCATCACAGGATGTAAAAAATTAGATGACAGAAACCTTATTAGTCCAAAATGCAAACCCAGATTGTAAGACTATTTTAAAAGCATTAAGACCAGCAGCAACACTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCCGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAACAAATTCAAATATCATAATGATGCAGAGAGGCAATTTTAGGAACCAAAGAAAGACTGTTAAGTGTTTCAATTGTGGCAAAGAAAGGCACATAGCCAGAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGATTGTACTGAGAGACAGGCTAATTTTTTAAGGAAGATCTGGCCTTCCTCCAAAGGAAGGCCAAGGAACTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTAGGGAGGAGACAGCAACTCCTCCTCAGAAGCAGGAGCCGGTGGACAAAGAAGTGTATCCTTTAGCTTCCCTCAAATCACTCTTTGGCAACGACCCCTCGTCACAATAA" @@ -3369,7 +3369,7 @@ "subtype_start": 2084, "subtype_end": 5096, "orientation": "forward", - "distance": 1.8783649052841465, + "distance": 0.7518376924488996, "protein": "AKIKQECGIPYNPQSQEVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDNRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIKDYGKQMAGDDCVASRQDED", "aminoacids": "FFKEDLAFLQRKAKELSSEQTRANSPTRRELQV*GGDSNSSSEAGAGGQRSVSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEISLPGR*KPKMIEGIGGFIKVRQYDQITIEICGHKAIGTVLVGPTPVNIIGRNLLTQISCTLNFPISPIETVPVQLKPGIDSPKVKQWPLTEEKIKALVEICTEMEKEKKISKIRPENPYNTPVFAIKKKDSTK*RKLVDFKELNKRTQDF*EVQLRIPHPARLKKKKSITVLDVGDAYFSIPLDKDFKKYTAFTIPSINNKTPEIRYQYNVLPQG*KRSPAIFQSSMIKILEPFRKQNPDIVIYQYIDDLYVRSDLEIRQHRTKIEELRQHLLK*RLTTPDKKHQKEPPFLWISYELHPDKWTVQPIVLPDKDSWTVNDIQKLVRKLN*ASQIYAEIKVRQLCKLLKGAKALTEVIQLTEEAELELAENKEILKEPVHEVYYDPSKDLIAELQKQRQGQWTYQIYQEPFKNLKTGKYARTRGTHTNDVKQLTEAVQKITTESIVI*GKTPRFKLPIQKET*DT*WTEYWQAT*IPE*EFVNTPPLVKL*YQLEKEPIVGAETFYVDRAANKETKLRKAGYVTSRGRQKVVSLTDTTNQKTELQAICLALQDSGLEVNIVTDSQYALRIIQAQPDKSESEIVNQIIEQLIKKEKVYLA*VPAHKRIRRNEQVDKLVSARIRKVLFLDRIDKAQEEHKKYHNN*RAMASDFNLPPVVAKKIVASCDKCQLKKEATHRQVDCSPRIWQLDCTHLEGKVILVAVHVASRYIEAEVIPAETGQETAYFLLKLAGR*PVKAIHTDNGTNFTSATVKAAC**AKIKQECGIPYNPQSQEVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDNRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIKDYGKQMAGDDCVASRQDED*", "nucleotides": "TTTTTTAAGGAAGATCTGGCCTTCCTCCAAAGGAAGGCCAAGGAACTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTAGGGAGGAGACAGCAACTCCTCCTCAGAAGCAGGAGCCGGTGGACAAAGAAGTGTATCCTTTAGCTTCCCTCAAATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAGGAGGGCAGCTAAAGGAAGCTCTATTAGATACAGGAGCAGATGACACAGTATTAGAAGAAATAAGTTTGCCAGGAAGATAGAAACCAAAAATGATAGAAGGAATTGGAGGCTTTATCAAAGTAAGACAGTATGATCAGATAACTATAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGCAGAAATTTGTTGACTCAGATTAGTTGTACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTACAATTAAAACCAGGAATAGATAGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAAGAAAAAAAGATTTCAAAAATTAGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGAAGAAAATTAGTAGATTTCAAGGAACTTAATAAAAGAACTCAAGACTTCTAAGAAGTTCAATTAAGAATACCACACCCCGCAAGGTTAAAAAAGAAGAAATCAATAACAGTACTAGATGTAGGTGATGCATATTTTTCAATTCCCTTAGATAAAGACTTCAAGAAGTATACTGCATTTACCATACCTAGTATAAATAATAAGACACCAGAGATTAGATATCAGTACAATGTGCTTCCACAGGGATAGAAAAGATCACCAGCAATATTCCAAAGTAGCATGATAAAAATCTTAGAGCCTTTTAGAAAGCAAAATCCAGACATAGTTATCTATCAATACATAGATGACTTGTATGTAAGATCTGACTTAGAAATAAGGCAGCATAGAACAAAAATAGAGGAACTGAGACAACACTTGTTGAAGTAGAGATTGACCACACCAGATAAAAAACATCAGAAAGAACCCCCATTCCTGTGGATAAGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAGACAAAGATAGCTGGACTGTCAATGACATACAGAAGCTAGTAAGAAAATTGAATTGAGCAAGTCAGATTTATGCAGAGATTAAAGTGAGACAATTATGTAAACTCCTTAAAGGAGCCAAAGCGCTAACAGAAGTGATACAACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAAAGAAATTCTAAAAGAACCAGTACATGAAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAGTTACAGAAGCAGAGGCAAGGCCAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAGTATGCAAGAACGAGAGGTACCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTGATATGAGGAAAGACCCCTAGATTTAAACTACCCATACAGAAAGAAACATAAGATACCTAGTGGACAGAATATTGGCAAGCCACCTAGATTCCCGAGTAAGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATAGTACCAATTAGAAAAAGAGCCTATTGTAGGAGCAGAAACTTTCTATGTAGATAGGGCAGCTAATAAAGAGACTAAATTAAGAAAAGCAGGATATGTTACTAGCAGAGGAAGACAAAAGGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAACTGCAAGCAATTTGTCTAGCATTGCAGGATTCAGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCACTAAGAATAATTCAAGCACAACCAGATAAGAGTGAATCAGAGATAGTCAATCAAATAATAGAGCAGTTAATAAAAAAGGAAAAGGTCTACCTTGCATAGGTACCAGCACACAAAAGAATTAGAAGAAATGAACAAGTAGATAAATTAGTCAGTGCTAGAATCAGGAAAGTCCTATTTTTAGATAGAATAGATAAGGCCCAAGAAGAGCATAAGAAATATCACAATAATTAAAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTAGTAGCAAAAAAAATAGTAGCCAGTTGTGATAAATGCCAGCTAAAAAAAGAAGCCACGCATAGACAAGTAGACTGTAGTCCAAGAATATGGCAATTAGATTGTACACATTTAGAAGGAAAAGTTATCCTAGTAGCAGTTCATGTAGCCAGTAGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAAGAAACAGCATACTTCCTCTTAAAATTAGCAGGAAGGTAGCCAGTGAAAGCAATACATACAGACAATGGAACCAATTTCACCAGTGCTACGGTTAAGGCCGCCTGTTAGTAGGCAAAGATCAAGCAGGAATGTGGCATTCCCTACAATCCCCAAAGTCAAGAAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAAGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTCCAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACAGACCTACAAACTAAAGAATTACAGAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAACAGAGATCCACTTTGGAAAGGACCAGCAAAACTTCTTTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGACATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATCATTAAGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG" @@ -3381,7 +3381,7 @@ "subtype_start": 5040, "subtype_end": 5619, "orientation": "forward", - "distance": 1.494270833333335, + "distance": 0.7067546928117459, "protein": "MENRWQVMIVWQVDRMRISTWKSLVKHHMYISKKAQGWFYRHHYENPHPRISSEVHIPLGDARLVITTY", "aminoacids": "MENRWQVMIVWQVDRMRISTWKSLVKHHMYISKKAQGWFYRHHYENPHPRISSEVHIPLGDARLVITTY*GLHTGERDWHLGQGVSIEWKERKYSTQVTPDLADQLIHLYYFDCFAESAIREAILGHRVSPRCEYQAGHNKVGSLQYLALTALVTPKKTKPPLPSVTKLTEDRWNKPQKTKGHRRSQTMNGH*", "nucleotides": "ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGCACATGGAAAAGTTTAGTAAAACACCATATGTACATTTCAAAGAAAGCCCAAGGATGGTTTTATAGACATCACTATGAAAATCCTCATCCAAGAATAAGTTCAGAAGTACACATCCCGCTAGGGGATGCTAGATTGGTAATAACAACATATTAGGGTCTGCATACAGGAGAAAGAGACTGGCATTTAGGTCAAGGAGTCTCCATAGAATGGAAGGAAAGGAAATATAGCACACAAGTAACCCCTGACCTAGCAGACCAACTAATTCACCTGTATTATTTTGATTGTTTTGCAGAATCTGCTATAAGAGAGGCCATATTAGGACATAGAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGATCTCTACAGTACTTGGCACTAACAGCATTAGTAACACCAAAAAAGACAAAGCCACCTTTGCCTAGTGTGACAAAACTGACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAAGGAGCCAAACAATGAATGGACACTAG" @@ -3393,7 +3393,7 @@ "subtype_start": 5558, "subtype_end": 5850, "orientation": "forward", - "distance": 0.5192307692307698, + "distance": 0.4557731262660367, "protein": "MEQAPEDQGPQKEPNNEWTLELLEELKREAVRHFPRTWLHGLGQHIYETYEDTWTGVGALIRILQQLLFIHFRIRCQHSRIGITRQRRARNRASRS", "aminoacids": "MEQAPEDQGPQKEPNNEWTLELLEELKREAVRHFPRTWLHGLGQHIYETYEDTWTGVGALIRILQQLLFIHFRIRCQHSRIGITRQRRARNRASRS*I", "nucleotides": "ATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAAGGAGCCAAACAATGAATGGACACTAGAGCTCTTAGAAGAGCTTAAGAGAGAAGCTGTTAGACATTTTCCTAGGACATGGCTTCATGGCTTAGGACAACATATCTATGAAACTTATGAGGATACTTGGACAGGAGTAGGAGCCTTAATAAGAATTCTGCAACAACTGCTGTTTATTCATTTCAGAATTAGGTGCCAACATAGCAGAATAGGCATCACTCGACAGAGGAGAGCAAGAAATAGAGCCAGTAGATCCTAGATT" @@ -3405,7 +3405,7 @@ "subtype_start": 5830, "subtype_end": 6045, "orientation": "forward", - "distance": 2.118055555555556, + "distance": 0.7735619356802272, "protein": "MRILGQE", "aminoacids": "MRILGQE*EP**EFCNNCCLFISELGANIAE*ASLDRGEQEIEPVDPRLEPWKHPGSQPKTPCTKCYCKKCCFHCQVCFTTKGLGISYGRKKRRQRRRPPQDSQTHQVPLPKQ*", "nucleotides": "ATGAGGATACTTGGACAGGAGTAGGAGCCTTAATAAGAATTCTGCAACAACTGCTGTTTATTCATTTCAGAATTAGGTGCCAACATAGCAGAATAGGCATCACTCGACAGAGGAGAGCAAGAAATAGAGCCAGTAGATCCTAGATTAGAGCCCTGGAAGCATCCAGGAAGTCAGCCTAAGACTCCTTGTACCAAATGCTATTGTAAAAAATGCTGCTTTCATTGCCAAGTTTGTTTCACAACAAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGACCTCCTCAAGACAGTCAGACTCATCAAGTACCTCTACCAAAGCAGTGA" @@ -3417,7 +3417,7 @@ "subtype_start": 5969, "subtype_end": 6045, "orientation": "forward", - "distance": 0.5769230769230769, + "distance": 0.48200514138817474, "protein": "MAGRSGDSDEDLLKTVRLIKYLYQSS", "aminoacids": "MAGRSGDSDEDLLKTVRLIKYLYQSS", "nucleotides": "ATGGCAGGAAGAAGCGGAGACAGCGACGAAGACCTCCTCAAGACAGTCAGACTCATCAAGTACCTCTACCAAAGCAGT" @@ -3429,7 +3429,7 @@ "subtype_start": 6061, "subtype_end": 6310, "orientation": "forward", - "distance": 1.3170731707317076, + "distance": 0.6799294887937548, "protein": "AIVLIEYKKILKQRRIDRLIDRIIDKAEDSGNESEGDQEELSAFVEIGHHAP", "aminoacids": "MQSLYILTIVALVVAAILAIVV*AIVLIEYKKILKQRRIDRLIDRIIDKAEDSGNESEGDQEELSAFVEIGHHAP*NVDDL*YCRPVVGHSLL*", "nucleotides": "ATGCAATCTTTATATATATTAACAATAGTAGCATTAGTAGTAGCAGCAATATTAGCAATAGTTGTGTAGGCCATAGTACTCATAGAATATAAGAAAATATTAAAACAAAGGAGAATAGATAGGTTAATTGATAGAATAATAGATAAGGCAGAAGACAGTGGCAATGAGAGTGAAGGAGATCAAGAGGAGTTATCAGCATTTGTAGAGATAGGGCATCATGCTCCTTAGAATGTTGATGATCTATAGTACTGCAGACCAGTGGTGGGTCACAGTCTATTATAA" @@ -3441,7 +3441,7 @@ "subtype_start": 6224, "subtype_end": 8795, "orientation": "forward", - "distance": 1.8288551401869095, + "distance": 0.7468204673173611, "protein": "MTNCTFNITTSIKDKIKKEAALFYKIDLVEIDEKKNNSSTRYRLINCNTSAITQACPKVSFKPIPIHFCAPASFAILKCNNKKFSGKGPCTNVSTVQCTHRIKPVVSTQLLLNGSLAEEEVMIRSDNITDNTKNIIVQLKEAIRIFCIRPNNNTRKSINIRPGRAFYTTGDIIRDIRQAHCNISGNWSNTLKQIATQLGKQLNQTQQIIFNSSAGKDPEIVTHSFNCGKKFFYCNSSSLFNST", "aminoacids": "MRVKEIKRSYQHL*R*GIMLLRMLMIYSTADQWWVTVYYKVPVWREANTTLFCASDAKAYSTEAHNV*ATHACVPTDPNPQEIVIENVTEDFNMWKNNMVDQMHEDIISL*DQSLKPCVKLTPLCVTLNCTDIRNSTVTSNTTSNTT*GEMTNCTFNITTSIKDKIKKEAALFYKIDLVEIDEKKNNSSTRYRLINCNTSAITQACPKVSFKPIPIHFCAPASFAILKCNNKKFSGKGPCTNVSTVQCTHRIKPVVSTQLLLNGSLAEEEVMIRSDNITDNTKNIIVQLKEAIRIFCIRPNNNTRKSINIRPGRAFYTTGDIIRDIRQAHCNISGNWSNTLKQIATQLGKQLNQTQQIIFNSSAGKDPEIVTHSFNCGKKFFYCNSSSLFNST*TKNGTDSWQSNDTQNSNITLQCRIKQIINLWQEVRKAMYAPPISRQINCTSNITGLVLTRDRRNETKTFRPGRENMKDNWRSKLYKYKVVRIEPLRIAPTKAKRRVVQREKRAVRLGAMFLKFLGAARSTIGAASIALTEQARRVLSGIVQQQNNLLRAIEAQQHLLQLTV*GIKQLQARVLAVERYLQDQQLLGL*GCSRKLICTTTVP*NRS*GRHNKNYKSLDDI*DNMT*IE*EKEIDNYTSLIYTLITESHSQQKKNEQELLALDK*ASL*N*FDISQWLWYIKIFIMIVGGLVSLRIVFAVLSIVNKVRQGYSPLSFQTLLPAPRGADRPERIEERGRERDKGRSGRLVNGFLALI*DDLRSLCLFSYHRLSDLLLIVIKIVELLRRKR*EALKY**NLLQY*SQELKNSAVSLLNTTAIVVAERTDKIIEILQRISRAFLHIPRRIRQGLEKALL*DRWQVVKK*", "nucleotides": "ATGAGAGTGAAGGAGATCAAGAGGAGTTATCAGCATTTGTAGAGATAGGGCATCATGCTCCTTAGAATGTTGATGATCTATAGTACTGCAGACCAGTGGTGGGTCACAGTCTATTATAAGGTACCTGTGTGGAGAGAAGCAAACACCACTCTATTTTGTGCATCAGATGCTAAAGCATATAGTACAGAGGCACATAATGTTTAGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAATAGTAATAGAAAATGTAACAGAAGATTTTAACATGTGGAAGAATAACATGGTAGATCAGATGCATGAGGATATAATCAGTTTATAGGATCAAAGTCTAAAGCCATGTGTGAAACTAACCCCACTCTGTGTTACTTTAAATTGTACTGATATTAGGAATAGTACCGTTACTTCTAATACTACTTCTAATACTACTTAGGGAGAAATGACAAACTGCACTTTCAATATCACCACAAGCATAAAGGATAAGATAAAAAAAGAAGCGGCACTTTTTTATAAAATTGATTTAGTAGAAATAGATGAAAAGAAAAATAACAGTAGTACCAGATATAGGTTGATAAATTGTAACACCTCAGCCATTACACAAGCCTGCCCAAAGGTATCCTTTAAGCCAATTCCCATACATTTTTGTGCCCCGGCTAGTTTTGCAATTCTAAAGTGTAATAATAAGAAGTTCAGTGGAAAAGGACCATGTACAAATGTCAGCACAGTGCAATGTACACATAGAATTAAGCCAGTAGTATCAACTCAACTGCTGTTAAATGGCAGTCTAGCAGAAGAAGAGGTAATGATTAGATCTGACAATATCACAGACAATACTAAAAACATAATAGTACAGTTGAAAGAAGCCATACGAATTTTCTGTATAAGACCCAACAACAATACAAGAAAAAGTATAAATATAAGACCAGGAAGAGCATTTTATACAACAGGAGATATAATAAGAGACATAAGGCAAGCACATTGTAACATTAGTGGAAATTGGAGTAACACTTTAAAACAGATAGCTACACAATTAGGAAAACAACTGAATCAAACACAACAAATAATCTTTAATTCATCCGCAGGAAAGGACCCAGAGATTGTAACACACAGTTTTAATTGTGGAAAGAAATTCTTCTATTGTAATTCATCATCACTGTTTAATAGTACCTAGACTAAAAATGGTACTGATAGTTGGCAGTCTAATGATACTCAGAATAGTAATATCACACTCCAATGCAGAATAAAACAAATTATAAACCTGTGGCAGGAAGTAAGAAAAGCAATGTATGCCCCTCCCATCAGTAGACAAATTAACTGTACATCAAATATTACAGGGCTAGTTTTAACAAGAGATAGGAGGAATGAAACTAAGACCTTTAGACCTGGAAGAGAAAATATGAAGGATAATTGGAGAAGTAAATTATATAAATATAAAGTAGTAAGAATTGAACCATTAAGAATAGCACCCACCAAGGCAAAAAGAAGAGTGGTGCAGAGAGAGAAAAGAGCAGTAAGACTAGGAGCTATGTTCCTTAAGTTCTTAGGAGCAGCCAGAAGCACTATAGGCGCAGCGTCGATAGCGCTGACGGAACAGGCCAGACGAGTCTTGTCTGGTATAGTGCAACAGCAGAACAATTTGCTGAGAGCTATTGAGGCGCAACAGCATTTGTTGCAACTCACAGTCTAAGGCATTAAGCAGCTCCAGGCAAGAGTCCTGGCTGTAGAAAGATACCTACAGGATCAACAGCTCCTAGGACTTTGAGGTTGCTCTAGAAAACTCATTTGCACCACTACTGTGCCTTAGAATCGTAGTTGAGGTAGGCATAACAAAAATTACAAAAGTCTAGATGACATTTAGGATAACATGACCTAGATAGAGTAGGAAAAAGAAATTGACAATTACACAAGCTTAATATACACCTTAATTACAGAATCACATTCCCAACAAAAAAAGAATGAACAAGAATTATTGGCATTAGATAAATAGGCAAGTTTGTAGAATTAGTTTGACATATCACAATGGCTGTGGTATATAAAAATATTCATAATGATAGTAGGAGGCTTAGTAAGTTTAAGAATAGTTTTTGCTGTACTTTCTATAGTGAATAAAGTTAGGCAAGGATACTCACCATTATCATTTCAGACCCTCCTCCCAGCCCCGAGAGGAGCCGACAGGCCCGAAAGAATAGAAGAAAGAGGTAGAGAGAGAGACAAAGGCAGATCCGGTCGATTAGTGAACGGATTCTTAGCACTTATCTAGGACGATCTACGGAGCCTATGCCTCTTCAGCTACCACCGCTTGAGCGACTTACTCTTGATTGTGATCAAGATTGTGGAACTTCTAAGACGCAAGAGGTAAGAAGCCCTCAAATATTAGTAGAATCTCCTGCAGTACTAGAGTCAGGAACTAAAGAATAGTGCTGTCAGCTTGCTCAACACCACAGCTATAGTAGTAGCTGAAAGGACAGATAAGATAATAGAAATATTACAAAGAATTAGTAGAGCTTTTCTCCACATACCTAGGAGAATAAGACAGGGCTTAGAAAAGGCTTTGCTATAAGATAGGTGGCAAGTGGTCAAAAAGTAG" @@ -3453,7 +3453,7 @@ "subtype_start": 8376, "subtype_end": 8469, "orientation": "forward", - "distance": 0.6000000000000001, + "distance": 0.4918032786885247, "protein": "RPSSQPREEPTGPKE", "aminoacids": "RPSSQPREEPTGPKE*KKEVERETKADPVD**", "nucleotides": "AGACCCTCCTCCCAGCCCCGAGAGGAGCCGACAGGCCCGAAAGAATAGAAGAAAGAGGTAGAGAGAGAGACAAAGGCAGATCCGGTCGATTAGTGA" @@ -3465,7 +3465,7 @@ "subtype_start": 8377, "subtype_end": 8653, "orientation": "forward", - "distance": 0.8274725274725274, + "distance": 0.5716671727907683, "protein": "RERQRQIRSISERILSTYLGRSTEPMPLQLPPLERLTLDCDQDCGTSKTQEVRSPQILVESPAVLESGTKE", "aminoacids": "DPPPSPERSRQARKNRRKR*RERQRQIRSISERILSTYLGRSTEPMPLQLPPLERLTLDCDQDCGTSKTQEVRSPQILVESPAVLESGTKE*", "nucleotides": "GACCCTCCTCCCAGCCCCGAGAGGAGCCGACAGGCCCGAAAGAATAGAAGAAAGAGGTAGAGAGAGAGACAAAGGCAGATCCGGTCGATTAGTGAACGGATTCTTAGCACTTATCTAGGACGATCTACGGAGCCTATGCCTCTTCAGCTACCACCGCTTGAGCGACTTACTCTTGATTGTGATCAAGATTGTGGAACTTCTAAGACGCAAGAGGTAAGAAGCCCTCAAATATTAGTAGAATCTCCTGCAGTACTAGAGTCAGGAACTAAAGAATAG" @@ -3477,7 +3477,7 @@ "subtype_start": 8796, "subtype_end": 9417, "orientation": "forward", - "distance": 1.64878048780488, + "distance": 0.7267254353902389, "protein": "MTYKAALDLSHFLKEKGGLEGLVYSQKRQDILDLWIYHTQGYFPDWQNYTPGPRIRYPLTFGWCFKLVPLEPDQVEEANEGENNSLLHPLSQHRMDDPEKEVLVWRFDSRLAFHHMAREKHPEFYKDC", "aminoacids": "MTYKAALDLSHFLKEKGGLEGLVYSQKRQDILDLWIYHTQGYFPDWQNYTPGPRIRYPLTFGWCFKLVPLEPDQVEEANEGENNSLLHPLSQHRMDDPEKEVLVWRFDSRLAFHHMAREKHPEFYKDC*HRAFHQGLSRRGVA*", "nucleotides": "ATGACTTATAAAGCAGCTCTAGATCTGAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAGTTTACTCCCAAAAAAGGCAAGATATCCTTGATCTGTGGATCTACCACACACAAGGCTATTTCCCTGATTGGCAGAACTACACACCAGGGCCAAGGATCAGATATCCCCTGACCTTTGGATGGTGCTTCAAGCTAGTACCACTTGAGCCAGATCAGGTAGAAGAGGCCAATGAAGGAGAGAACAACAGCCTGTTACACCCTCTGAGCCAGCATAGGATGGATGACCCGGAGAAAGAAGTGCTAGTGTGGAGATTTGACAGCCGCCTCGCATTTCATCACATGGCCCGAGAGAAGCATCCGGAGTTCTACAAAGACTGCTGACATAGAGCTTTCCACCAGGGACTTTCCAGAAGAGGCGTGGCCTAG" @@ -3491,7 +3491,7 @@ "subtype_start": 789, "subtype_end": 2292, "orientation": "forward", - "distance": 0.2571999999999999, + "distance": 0.2932056543547651, "protein": "MGARASILSGGKLDSWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSVNVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE", "aminoacids": "MGARASILSGGKLDSWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSVNVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE*R*", "nucleotides": "ATGGGTGCGAGAGCGTCAATATTAAGCGGGGGAAAATTAGATTCATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATTTAGTATGGGCAAGCAGGGAGCTAGAACGATTTGCCGTTAACCCTGGCCTGTTAGAAACATCAGAGGGATGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATTTAATGCAGTAGCAGTCCTCTATTGTGTACATCAAAGGATACAGGTACAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGTAGCAGCAGCTGACACTGACACAGGAAACAGCAGCCAAAATTACCCCATAGTGCAGAACCTCCAGGGGCAAATGGTACATCAGCCCCTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAAAAGGCCTTCAGCCCAGAAGTCATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGTCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCTTGGGATTAAATAAAATAGTAAGGATGTATAGCCCTACCAGTATTCTGGATATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAGAACTTTAAGAGCTGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATTCGAATCCAGATTGTAAGACTATTTTAAAAGCATTAGGACCAGCAGCAACACTAGAGGAAATGATGACAGCATGTCAAGGAGTGGGGGGACCAGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAAATTCAGTTAATGTAATGATGCAAAGAGGCAATTTTAGAAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACATCAAATGAAAGACTGTACAGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAG" @@ -3503,7 +3503,7 @@ "subtype_start": 2084, "subtype_end": 5096, "orientation": "forward", - "distance": 0.14755732801595212, + "distance": 0.1922427454342348, "protein": "FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVHQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED", "aminoacids": "FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVHQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*", "nucleotides": "TTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAGGGGGGCAATTTAAAGAAGCTTTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACCCATAGAAATCTGTGGACACAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGCTTGGTTGTACCTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTCAATAAGAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAATTCCCTTAGATAAAGAATTCAGGAAGTATACTGCATTTACCATACCTAGTACAAATAATGAGACACCAGGGATTAGGTATGAGTACAATGTGCTGCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGCAAAATCCAGATATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAACTGAGACAACATCTGTTAAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAGTGGACAGTACAGCCTATAATACTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTACGCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAGGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTTTAAGAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGCAATGGACAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTACAAAAGATAGCCACAGAAAGCATAGTAATATGGGGAAAAACTCCTAAATTTAGACTACCTATACAAAAAGAAACGTGGGAGACATGGTGGGCAGAGTACTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAATTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACTAAATTAGGCAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAGGTTATCTCCCTAACGGACACAACAAATCAAAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATCAGAAGTAAACATAGTAACAGACTCACAATATACATTAGGAATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCCATCAGATAATAGAGCAGTTAATAAAAAAGGAAAAAGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGACAAACTAGTCAGTGCTGGAGTCAGGAGAGTACTATTTCTAGATGGAATAGATAAGGCCCAAGAAGACCATGAGAAATATCACAGTAATTGGAGAGCAATGGCTGGTGATTTTAATATACCCCCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCAAAAAGGAGAGGCCATGCATGGACAAGTAGATTGTAGTCCAGGAATATGGCAACTAGATTGTACACATCTAGAAGGGAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTCTCCTGAAACTAGCAGGGAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTAATGTGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCCATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTATAGTGCAGGGGAAAGAATAGTAGATATAATAGCAACAGACCTACAAACTAAAGAATTACAGAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGGAGAAAAGCAAAAATCATTAGGGATTATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG" @@ -3515,7 +3515,7 @@ "subtype_start": 5040, "subtype_end": 5619, "orientation": "forward", - "distance": 0.36979166666666674, + "distance": 0.37360555672490003, "protein": "MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPDLADQLIHLYYFDCFSESAIRNAILGHIVNPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH", "aminoacids": "MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPDLADQLIHLYYFDCFSESAIRNAILGHIVNPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH*", "nucleotides": "ATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATGTTTCAAAGAAAACTAAAGGATGGTTTTATAGACATCACTATGAAAGCACACATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTGGTAGTAACAACATATTGGGGCCTGAATACAGGAGAAAGAGAATGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGAAAAAGGAAATATAGCACACAAGTTGACCCTGACCTAGCAGACCAACTAATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACATATAGTTAATCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGCTCTCTACAATACTTGGCACTAAAAGCATTAACAACACCAAAGAGAAGAAAGCCACCTTTACCTAGTGTTAGGAAACTGACAGAGGATAGATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAG" @@ -3527,7 +3527,7 @@ "subtype_start": 5558, "subtype_end": 5850, "orientation": "forward", - "distance": 0.4038461538461544, + "distance": 0.39444027047332864, "protein": "MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS", "aminoacids": "MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS*T", "nucleotides": "ATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAGAGCTTTTAGAGGAACTTAAGAATGAAGCGGTTAGACATTTTCCTAGGCCGTGGCTCCATGGCTTAGGACAACATATCTATGAAACTTATGGGGACACTTGGACAGGAGTGGAGGCCATAATAAGAACCCTGCAACAACTGCTGTTTATTCATTTCAGACTTGGGTGTCGACATAGCAGAATAGGCATTGTGCCACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACT" @@ -3539,7 +3539,7 @@ "subtype_start": 5830, "subtype_end": 6045, "orientation": "forward", - "distance": 0.29166666666666674, + "distance": 0.31992687385740404, "protein": "MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ", "aminoacids": "MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ*", "nucleotides": "ATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCACCCAGGAAGTCAGCCTAAAACTCCTTGTACTAACTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAAAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGTAA" @@ -3551,7 +3551,7 @@ "subtype_start": 5969, "subtype_end": 6045, "orientation": "forward", - "distance": 0.5769230769230769, + "distance": 0.48200514138817474, "protein": "MAGRSGDSDEELLKAVRLIKILYQSS", "aminoacids": "MAGRSGDSDEELLKAVRLIKILYQSS", "nucleotides": "ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGT" @@ -3563,7 +3563,7 @@ "subtype_start": 6061, "subtype_end": 6310, "orientation": "forward", - "distance": 0.6500000000000001, + "distance": 0.5118110236220472, "protein": "MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAEDSGNESEGDQEELSALMEMGHHAPGDVDDL", "aminoacids": "MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAEDSGNESEGDQEELSALMEMGHHAPGDVDDL*", "nucleotides": "ATGCAACCTCTGCACATAGCAGCAATAGTAGGATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGACCATAGTGTTAATAGAATATAGGAAAATATTAAGACAAAAAAGGATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAG" @@ -3575,7 +3575,7 @@ "subtype_start": 6224, "subtype_end": 8795, "orientation": "forward", - "distance": 0.4941588785046729, + "distance": 0.4435264018789581, "protein": "MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTESHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSKEGKMAEEMRNCSFNITTEIRNKMQKEYALFYKLDVVPIDDDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYGNKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSGTETFRPGGGDMKDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL", "aminoacids": "MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTESHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSKEGKMAEEMRNCSFNITTEIRNKMQKEYALFYKLDVVPIDDDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYGNKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSGTETFRPGGGDMKDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL*", "nucleotides": "ATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTGACAGTCTATTATGGGGTACCTGTATGGAAAGAAGCAAACACCACTCTATTTTGTGCATCGGATGCTAAAGCATATACCACAGAGTCACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGGATTGGAAAATGTGACAGAAAATTTTAATATGTGGAAAAATAACATGGTAGAACAGATGCATGAGGATGTAATCAATTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCACTAATCTGAATGTTACTAATACCAATAGCAGTAGTAAGGAGGGAAAGATGGCGGAAGAAATGAGAAACTGCTCTTTCAATATCACCACAGAAATAAGAAATAAGATGCAGAAGGAATATGCACTTTTTTATAAACTTGATGTAGTACCAATAGATGATGATAATACAAGTTATACATTGATAAATTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCTATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAGGATAAGAAGTTCAATGGATCAGGACCATGTAAAAGTGTCAGCACAGTACAATGTACACATGGAATTAAGCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTTTAGCAGAAGAAGAGGTAGTAATTAGATCTGAAAATTTCACGAACAATGCTAAAACCATAATAGTACATCTGAAGGAACCTATACAAATTAATTGTACAAGACCCAACAACAATACAATGAAAAGTATCCCTCTAGGACCAGGAAGAGCATTCTATGCAACAGGAGCCATAATAGGAGATATAAGACAAGCACATTGTAACCTTAGTAGAAAAGCATGGAATAATACTTTAAAACAGGTAGTTGAAAAATTAAAAGAACAATATGGGAATAAAACAATAATCTTTAATCACTCCTCAGGAGGGGACCCAGAAATTATAATGCATACTTTTAATTGTGGAGGGGAATTTTTCTATTGTAATACAACACAGCTGTTTAATAGTACTTGGAATAGTACTTGGACTGGGAATGCTACCGAATTAGATGGAAACATCACACTCCCATGCAGAATAAAACAGATTATAAACAGGTGGCAAGAAGTAGGAAAAGCAATGTATGCCCCTCCCATTAGAGGAAAAATTAGATGTTCATCAAATATTACAGGGTTACTATTAGTAAGAGATGGTGGTAACACGAGCGGGACTGAGACCTTCAGACCTGGAGGAGGAGATATGAAGGACAATTGGAGGAGTGAATTATATAAATATAAAGTAGTAAAAATTGAGCCATTAGGAGTAGCACCCACCAGGGCAAAGAGAAGAGTGGTGCAAAGAGAAAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAAGCCAGGCTGTTATTGTCTGGTATAGTGCAACAGCAAAACAATTTGCTGAGAGCTATTGAGGCGCAACAACATCTATTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTACAGGATCAACAGCGCCTGGGAATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCCTGGAATGCTAGTTGGAGTAATAAATCTCTGAATCAGATTTGGGATAACATGACCTGGATGGAGTGGGAAAGAGAAATTAACAATTACACAGACACAATATACACCTTAATTGAAAAGGCGCAGAACCAGCAGGAAAAGAATGAACAAGAATTATTGGAATTGGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAAATGGCTGTGGTACATAAAATTATTCATAATGATAGTAGGAGGATTGATAGGTTTAAGAATAGTTTTTGCTGTACTTGCTATAGTAAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGTCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAGCTTATTCAATGTCACAGCCATCGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAAGAGCTTGTAGAGCTCTTCTCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCATTGTTATAA" @@ -3587,7 +3587,7 @@ "subtype_start": 8376, "subtype_end": 8469, "orientation": "forward", - "distance": 0.28666666666666596, + "distance": 0.3161764705882347, "protein": "RPTSQPRGDPTGPKESKKKVEKETETDQFD", "aminoacids": "RPTSQPRGDPTGPKESKKKVEKETETDQFD**", "nucleotides": "AGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGA" @@ -3599,7 +3599,7 @@ "subtype_start": 8377, "subtype_end": 8653, "orientation": "forward", - "distance": 0.4285714285714286, + "distance": 0.40871934604904625, "protein": "DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVSLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE", "aminoacids": "DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVSLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE*CY*", "nucleotides": "GACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGTCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAG" @@ -3611,7 +3611,7 @@ "subtype_start": 8796, "subtype_end": 9417, "orientation": "forward", - "distance": 0.5918699186991796, + "distance": 0.48839393532805264, "protein": "MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTYKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPTSLHGVEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC", "aminoacids": "MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTYKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPTSLHGVEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC*H*", "nucleotides": "ATGGGGGGCAAGTGGTCAAAAAGTAGTGGGGGTGGATGGCCTGCTGTAAGGGAAAGAATGAGACGAACTGAGCCAGCAGCAGAAGGGGTGGGAGCAGTATCTCGAGACCTGGAAAGACATGGAGCAGTCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGCGCCTGGCTGGAAGCACAAGAAGAGGACAGTGAAGTGGGTTTTCCAGTCAGACCTCAGGTGCCTTTAAGACCAATGACTTACAAAGGAGCTCTCGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCCCAAAAAAGACAAGATATCCTTGACCTGTGGGTCTACAACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGACCAGATATCCACTGACCTTTGGGTGGTGTTTCAAGCTAGTACCAGTGGAGCCAGAAGAGGCCAATCAAGGAGAGAACAACTGCTTGTTACACCCTACGAGCCTGCATGGGGTGGAGGACCCGGAAAAAGAAGTATTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCACATGGCCCGAGAGAAGCATCCGGAGTACTACAAAGACTGCTGACATTGA" @@ -3625,7 +3625,7 @@ "subtype_start": 789, "subtype_end": 2292, "orientation": "forward", - "distance": 0.2571999999999999, + "distance": 0.2932056543547651, "protein": "MGARASILSGGKLDSWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSVNVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE", "aminoacids": "MGARASILSGGKLDSWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSVNVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE*", "nucleotides": "ATGGGTGCGAGAGCGTCAATATTAAGCGGGGGAAAATTAGATTCATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATTTAGTATGGGCAAGCAGGGAGCTAGAACGATTTGCCGTTAACCCTGGCCTGTTAGAAACATCAGAGGGATGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATTTAATGCAGTAGCAGTCCTCTATTGTGTACATCAAAGGATACAGGTACAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGTAGCAGCAGCTGACACTGACACAGGAAACAGCAGCCAAAATTACCCCATAGTGCAGAACCTCCAGGGGCAAATGGTACATCAGCCCCTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAAAAGGCCTTCAGCCCAGAAGTCATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCTTGGGATTAAATAAAATAGTAAGGATGTATAGCCCTACCAGTATTCTGGATATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAGAACTTTAAGAGCTGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATTCGAATCCAGATTGTAAGACTATTTTAAAAGCATTAGGACCAGCAGCAACACTAGAGGAAATGATGACAGCATGTCAAGGAGTGGGGGGACCAGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAAATTCAGTTAATGTAATGATGCAAAGAGGCAATTTTAGAAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACATCAAATGAAAGACTGTACAGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAA" @@ -3637,7 +3637,7 @@ "subtype_start": 2084, "subtype_end": 5096, "orientation": "forward", - "distance": 1.3952143569292395, + "distance": 0.6923404213213582, "protein": "FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEAFLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDMGNGQYSL", "aminoacids": "FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEAFLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDMGNGQYSL*YCQKKTAGLSMTYRS*WEN*IGQVRFTQGLK*GNYVNSLGEPKH*QR*YH*QKKQS*NWQKTGKF*ENQYMECIMTHQKT**QKYRSRAMDSGHIKFIKSHLKI*KQENMQE*GVPTLMM*NN*QRQYKR*PQKA**YGEKLLNLDYLYKKKHGRHGGQSTGKPPGFLSGSLSIPLP**NYGTN*RKNP**EQKLSM*MGQLIEKLN*AKQDMSLTEEDKRLSP*RTQQIKRLSYKQFI*LCRIRDQK*T**QTHNIH*ESFKHNQIRVNQS*SIR**SS**KRKKSTWHGYQHTKELEEMNK*TN*SVLESGEYYF*ME*IRPKKTMRNITVIGEQWLVILIYPL**QKK**PAVINVSKKERPCMDK*IVVQEYGN*IVHI*KGKLSW*QFM*PVDI*KQKLFQQRQGRKQHTFS*N*QGDGQ*KQYIQTMAAISPVMWLRPPVGGQGSSRNLAFPTIPKVKE**NP*IKN*RKL*DR*EIRLNILRQQYKWQYSSTILKEKGGLGGIVQGKE**I**QQTYKLKNYRNKLQKFKIFGFITGTAEIHFGKDQQSFSGKVKGQ**YKIIVI*K*", "nucleotides": "TTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAAATAGGGGGGCAATTTAAAGAAGCTTTCTTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACCCATAGAAATCTGTGGACACAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGCTTGGTTGTACCTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTCAATAAGAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAATTCCCTTAGATAAAGAATTCAGGAAGTATACTGCATTTACCATACCTAGTACAAATAATGAGACACCAGGGATTAGGTATGAGTACAATGTGCTGCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGCAAAATCCAGATATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAACTAAGACAACATCTGTTAAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATATGGGAAATGGACAGTACAGCCTATAATACTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTACGCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAGGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTTTAAGAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGCAATGGACAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTACAAAAGATAGCCACAGAAAGCATAGTAATATGGGGAAAAACTCCTAAATTTAGACTACCTATACAAAAAGAAACATGGGAGACATGGTGGGCAGAGTACTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAATTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACTAAATTAGGCAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAGGTTATCTCCCTAACGGACACAACAAATCAAAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATCAGAAGTAAACATAGTAACAGACTCACAATATACATTAGGAATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAATCAGATAATAGAGCAGTTAATAAAAAAGGAAAAAGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGACAAACTAGTCAGTGCTGGAGTCAGGAGAGTACTATTTCTAGATGGAATAGATAAGGCCCAAGAAGACCATGAGAAATATCACAGTAATTGGAGAGCAATGGCTGGTGATTTTAATATACCCCCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCAAAAAGGAGAGGCCATGCATGGACAAGTAGATTGTAGTCCAGGAATATGGCAACTAGATTGTACACATCTAGAAGGGAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTCTCCTGAAACTAGCAGGGAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTAATGTGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCCATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTATAGTGCAGGGGAAAGAATAGTAGATATAATAGCAACAGACCTACAAACTAAAGAATTACAGAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAG" @@ -3649,7 +3649,7 @@ "subtype_start": 5040, "subtype_end": 5619, "orientation": "forward", - "distance": 0.36979166666666674, + "distance": 0.37360555672490003, "protein": "MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHRVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH", "aminoacids": "MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHRVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH*", "nucleotides": "ATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATGTTTCAAAGAAAACTAAAGGATGGTTTTATAGACATCACTATGAAAGCACTCATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTGGTAGTAACAACATATTGGGGCCTGAATACAGGAGAAAGAGAATGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGAAAAAGGAAATATAGCACACAAGTTGACCCTAACCTAGCAGACCAACTAATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACATAGAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGCTCTCTACAATACTTGGCACTAAAAGCATTAACAACACCAAAGAGAAGAAAGCCACCTTTACCTAGTGTTAGGAAACTGACAGAGGATAGATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAG" @@ -3661,7 +3661,7 @@ "subtype_start": 5558, "subtype_end": 5850, "orientation": "forward", - "distance": 0.4038461538461544, + "distance": 0.39444027047332864, "protein": "MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS", "aminoacids": "MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS*T", "nucleotides": "ATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAGAGCTTTTAGAGGAACTTAAGAATGAAGCGGTTAGACATTTTCCTAGGCCGTGGCTCCATGGCTTAGGACAACATATCTATGAAACTTATGGGGACACTTGGACAGGAGTGGAGGCCATAATAAGAACCCTGCAACAACTGCTGTTTATTCATTTCAGACTTGGGTGTCGACATAGCAGAATAGGCATTGTGCCACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACT" @@ -3673,7 +3673,7 @@ "subtype_start": 5830, "subtype_end": 6045, "orientation": "forward", - "distance": 0.29166666666666674, + "distance": 0.31992687385740404, "protein": "MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ", "aminoacids": "MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ*", "nucleotides": "ATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCACCCAGGAAGTCAGCCTAAAACTCCTTGTACTAACTGCTATTGCAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAAAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGTAA" @@ -3685,7 +3685,7 @@ "subtype_start": 5969, "subtype_end": 6045, "orientation": "forward", - "distance": 0.6346153846153846, + "distance": 0.5058246474555488, "protein": "MAGRSGDSDEELLKAVRLIKILYQSSK", "aminoacids": "MAGRSGDSDEELLKAVRLIKILYQSSK", "nucleotides": "ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGTAAG" @@ -3697,7 +3697,7 @@ "subtype_start": 6061, "subtype_end": 6310, "orientation": "forward", - "distance": 0.6500000000000001, + "distance": 0.5118110236220472, "protein": "MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAEDSGNESEGDQEELSALMEMGHHAPGDVDDL", "aminoacids": "MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAEDSGNESEGDQEELSALMEMGHHAPGDVDDL*", "nucleotides": "ATGCAACCTCTGCACATAGCAGCAATAGTAGGATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGACCATAGTGTTAATAGAATATAGGAAAATATTAAGACAAAAAAGGATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAG" @@ -3709,7 +3709,7 @@ "subtype_start": 6224, "subtype_end": 8795, "orientation": "forward", - "distance": 0.49065420560747675, + "distance": 0.44177044766072027, "protein": "MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEVHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRDKMQKEYALFYKLDVVPIDDDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYGNKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSGTETFRPGGGNMKDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLDQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL", "aminoacids": "MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEVHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRDKMQKEYALFYKLDVVPIDDDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYGNKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSGTETFRPGGGNMKDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLDQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL*", "nucleotides": "ATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTGACAGTCTATTATGGGGTACCTGTATGGAAAGAAGCAAACACCACTCTATTTTGTGCATCGGATGCTAAAGCATATACCACAGAGGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGGATTGGAAAATGTGACAGAAAATTTTAACATGTGGAAAAATAACATGGTAGAACAGATGCATGAGGATGTAATCAATTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCACTAATCTGAATGTTACTAATACCAATAGCAGTAGTGAGGAGGGAAAGATGGCGGAAGAAATGAGAAACTGCTCTTTCAATATCACCACAAAAATAAGAGATAAGATGCAGAAAGAATATGCACTTTTTTATAAACTTGATGTAGTACCAATAGATGATGATAATACAAGTTATACATTGATAAATTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCTATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAGGATAAGAAGTTCAATGGATCAGGACCATGTAAAAATGTCAGCACAGTACAATGTACACATGGAATTAAGCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTTTAGCAGAAGAAGAGGTAGTAATTAGATCTGAAAATTTCACGAACAATGCTAAAACCATAATAGTACATCTGAAGGAACCTATACAAATTAATTGTACAAGACCCAACAACAATACAATGAAAAGTATCCCTCTAGGACCAGGAAGAGCATTCTATGCAACAGGAGCCATAATAGGAGATATAAGACAAGCACATTGTAACCTTAGTAGAAAAGCATGGAATAATACTTTAAAACAGGTAGTTGAAAAATTAAAAGAACAATATGGGAATAAAACAATAATCTTTAATCACTCCTCAGGAGGGGACCCAGAAATTATAATGCATACTTTTAATTGTGGAGGGGAATTTTTCTATTGTAATACAACACAGCTGTTTAATAGTACTTGGAATAGTACTTGGACTGGGAATGCTACCGAATTAGATGGAAACATCACACTCCCATGCAGAATAAAACAGATTATAAACAGGTGGCAAGAAGTAGGAAAAGCAATGTATGCCCCTCCCATTAGAGGAAAAATTAGATGTTCATCAAATATTACAGGGTTACTATTAGTAAGAGATGGTGGTAACACGAGCGGGACTGAGACCTTCAGACCTGGAGGAGGAAATATGAAGGACAATTGGAGGAGTGAATTATATAAATATAAAGTAGTAAAAATTGAGCCATTAGGAGTAGCACCCACCAGGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAAGCCAGGCTGTTATTGTCTGGTATAGTGCAACAGCAAAACAATTTGCTGAGAGCTATTGAGGCGCAACAACATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTACAGGATCAACAGCGCCTGGGAATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCCTGGAATGCTAGTTGGAGTAATAAATCTCTGGATCAGATTTGGGATAACATGACCTGGATGGAGTGGGAAAGAGAAATTAACAATTACACAGACACAATATACACCTTAATTGAAAAGGCGCAGAACCAGCAGGAAAAGAATGAACAAGAATTATTGGAATTGGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAAATGGCTGTGGTACATAAAATTATTCATAATGATAGTAGGAGGATTGATAGGTTTAAGAATAGTTTTTGCTGTACTTGCTATAGTAAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGTCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAGCTTATTTAATGTCACAGCCATCGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAAGAGCTTGTAGAGCTCTTCTCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCATTGTTATAA" @@ -3721,7 +3721,7 @@ "subtype_start": 8376, "subtype_end": 8469, "orientation": "forward", - "distance": 0.28666666666666596, + "distance": 0.3161764705882347, "protein": "RPTSQPRGDPTGPKESKKKVEKETETDQFD", "aminoacids": "RPTSQPRGDPTGPKESKKKVEKETETDQFD**", "nucleotides": "AGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGA" @@ -3733,7 +3733,7 @@ "subtype_start": 8377, "subtype_end": 8653, "orientation": "forward", - "distance": 0.4285714285714286, + "distance": 0.40871934604904625, "protein": "DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVSLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE", "aminoacids": "DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVSLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE*CY*", "nucleotides": "GACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGTCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAG" @@ -3745,7 +3745,7 @@ "subtype_start": 8796, "subtype_end": 9417, "orientation": "forward", - "distance": 0.6162601626016186, + "distance": 0.49848743916874616, "protein": "MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDNEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPTSLHGVEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC", "aminoacids": "MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDNEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPTSLHGVEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC*H*", "nucleotides": "ATGGGGGGCAAGTGGTCAAAAAGTAGTGGGGGTGGATGGCCTGCTGTAAGGGAAAGAATGAGACGAACTGAGCCAGCAGCAGAAGGGGTGGGAGCAGTATCTCGAGACCTGGAAAGACATGGAGCAGTCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGCGCCTGGCTGGAAGCACAAGAAGAGGACAATGAAGTGGGTTTTCCAGTCAGACCTCAGGTGCCTTTAAGACCAATGACTTTCAAAGGAGCTCTCGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCCCAAAAAAGACAAGATATCCTTGACCTGTGGGTCTACAACACACAAGGATACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGACCAGATATCCACTGACCTTTGGGTGGTGTTTCAAGCTAGTACCAGTGGAGCCAGAAGAGGCCAATCAAGGAGAGAACAACTGCTTGTTGCACCCTACGAGCCTGCATGGGGTGGAGGACCCGGAAAAAGAAGTATTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCACATGGCCCGAGAGAAGCATCCGGAGTACTACAAAGACTGCTGACATTGA" @@ -3759,7 +3759,7 @@ "subtype_start": 789, "subtype_end": 2292, "orientation": "forward", - "distance": 0.2571999999999999, + "distance": 0.2932056543547651, "protein": "MGARASILSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWTTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSANVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE", "aminoacids": "MGARASILSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWTTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSANVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE*R*", "nucleotides": "ATGGGTGCGAGAGCGTCAATATTAAGCGGGGGAAAATTAGATGCATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATTTAGTATGGGCAAGCAGGGAGCTAGAACGATTTGCCGTTAACCCTGGCCTGTTAGAAACATCAGAGGGATGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATTTAATGCAGTAGCAGTCCTCTATTGTGTACATCAAAGGATACAGGTACAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGTAGCAGCAGCTGACACTGACACAGGAAACAGCAGCCAAAATTACCCCATAGTGCAGAACCTCCAGGGGCAAATGGTACATCAGCCCCTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAAAAGGCCTTCAGCCCAGAAGTCATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGACGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCTTGGGATTAAATAAAATAGTAAGGATGTATAGCCCTACCAGTATTCTGGATATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAGAACTTTAAGAGCTGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATTCGAATCCAGATTGTAAGACTATTTTAAAAGCATTAGGACCAGCAGCAACACTAGAGGAAATGATGACAGCATGTCAAGGAGTGGGGGGACCAGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAAATTCAGCTAATGTAATGATGCAGAGAGGCAATTTTAGAAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACATCAAATGAAAGACTGTACAGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAG" @@ -3771,7 +3771,7 @@ "subtype_start": 2084, "subtype_end": 5096, "orientation": "forward", - "distance": 0.14755732801595212, + "distance": 0.1922427454342348, "protein": "FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSTGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED", "aminoacids": "FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSTGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*", "nucleotides": "TTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAGGGGGGCAATTTAAAGAAGCTTTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACCCATAGAAATCTGTGGACACAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGCTTGGTTGTACCTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTCAATAAGAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAATTCCCTTAGATAAAGAATTCAGGAAGTATACTGCATTTACCATACCTAGTACAAATAATGAGACACCAGGGATTAGGTATGAGTACAATGTGCTGCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGCAAAATCCAGATATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAACTGAGACAACATCTGTTAAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAGTGGACAGTACAGCCTATAATACTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTACGCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAGGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTTTAAGAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGCAATGGACAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTACAAAAGATAGCCACAGAAAGCATAGTAATATGGGGAAAAACTCCTAAATTTAGACTACCTATACAAAAAGAAACATGGGAGACATGGTGGGCAGAGTACTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAATTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACTAAATTAGGCAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAGGTTATCTCCCTAACGGACACAACAAATCAAAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATCAGAAGTAAACATAGTAACAGACTCACAATATACATTAGGAATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAATCAGATAATAGAGCAGTTAATAAAAAAGGAAAAAGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGACAAACTAGTCAGTACTGGAGTCAGGAGAGTACTATTTCTAGATGGAATAGATAAGGCCCAAGAAGACCATGAGAAATATCACAGTAATTGGAGAGCAATGGCTGGTGATTTTAATATACCCCCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCAAAAAGGAGAGGCCATGCATGGACAAGTAGATTGTAGTCCAGGAATATGGCAACTAGATTGTACACATCTAGAAGGGAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTCTCCTGAAACTAGCAGGGAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTAATGTGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCCATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTATAGTGCAGGGGAAAGAATAGTAGATATAATAGCAACAGACCTACAAACTAAAGAATTACAGAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGGAGAAAAGCAAAAATCATTAGGGATTATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG" @@ -3783,7 +3783,7 @@ "subtype_start": 5040, "subtype_end": 5619, "orientation": "forward", - "distance": 0.35416666666666674, + "distance": 0.36355859709153127, "protein": "MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH", "aminoacids": "MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH*", "nucleotides": "ATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATGTTTCAAAGAAAACTAAAGGATGGTTTTATAGACATCACTATGAAAGCACTCATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTGGTAGTAACAACATATTGGGGCCTGAATACAGGAGAAAGAGAATGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGAAAAAGGAAATATAGCACACAAGTTGACCCTAACCTAGCAGACCAACTAATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACATATAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGCTCTCTACAATACTTGGCACTAAAAGCATTAACAACACCAAAGAGAAGAAAGCCACCTTTACCTAGTGTTAGGAAACTGACAGAGGATAGATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAG" @@ -3795,7 +3795,7 @@ "subtype_start": 5558, "subtype_end": 5850, "orientation": "forward", - "distance": 0.4038461538461544, + "distance": 0.39444027047332864, "protein": "MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS", "aminoacids": "MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS*T", "nucleotides": "ATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAGAGCTTTTAGAGGAACTTAAGAATGAAGCGGTTAGACATTTTCCTAGGCCGTGGCTCCATGGCTTAGGACAACATATCTATGAAACTTATGGGGACACTTGGACAGGAGTGGAGGCCATAATAAGAACCCTGCAACAACTGCTGTTTATTCATTTCAGACTTGGGTGTCGACATAGCAGAATAGGCATTGTGCCACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACT" @@ -3807,7 +3807,7 @@ "subtype_start": 5830, "subtype_end": 6045, "orientation": "forward", - "distance": 0.29166666666666674, + "distance": 0.31992687385740404, "protein": "MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ", "aminoacids": "MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ*", "nucleotides": "ATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCACCCAGGAAGTCAGCCTAAAACTCCTTGTACTAACTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAAAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGTAA" @@ -3819,7 +3819,7 @@ "subtype_start": 5969, "subtype_end": 6045, "orientation": "forward", - "distance": 0.6346153846153846, + "distance": 0.5058246474555488, "protein": "MAGRSGDSDEELLKAVRLIKILYQSSK", "aminoacids": "MAGRSGDSDEELLKAVRLIKILYQSSK", "nucleotides": "ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGTAAG" @@ -3831,7 +3831,7 @@ "subtype_start": 6061, "subtype_end": 6310, "orientation": "forward", - "distance": 0.6865853658536587, + "distance": 0.5254806794847863, "protein": "MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAKDSGNESEGDQEELSALMEMGHHAPGDVDDL", "aminoacids": "MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAKDSGNESEGDQEELSALMEMGHHAPGDVDDL*", "nucleotides": "ATGCAACCTCTGCACATAGCAGCAATAGTAGGATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGACCATAGTGTTAATAGAATATAGGAAAATATTAAGACAAAAAAGGATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAAAAGACAGTGGCAATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAG" @@ -3843,7 +3843,7 @@ "subtype_start": 6224, "subtype_end": 8795, "orientation": "forward", - "distance": 0.49135514018691584, + "distance": 0.4421225244922844, "protein": "MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEAHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRNKMQKEYALFYKLDVVPIDNDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYENKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSETETFRPGGGDMKDNWRSELYKYKVEKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL", "aminoacids": "MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEAHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRNKMQKEYALFYKLDVVPIDNDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYENKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSETETFRPGGGDMKDNWRSELYKYKVEKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL*", "nucleotides": "ATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTGACAGTCTATTATGGGGTACCTGTATGGAAAGAAGCAAACACCACTCTATTTTGTGCATCGGATGCTAAAGCATATACCACAGAGGCACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGGATTGGAAAATGTGACAGAAAATTTTAACATGTGGAAAAATAACATGGTAGAACAGATGCATGAGGATGTAATCAATTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCACTAATCTGAATGTTACTAATACCAATAGCAGTAGTGAGGAGGGAAAGATGGCGGAAGAAATGAGAAACTGCTCTTTCAATATCACCACAAAAATAAGAAATAAGATGCAGAAGGAATATGCACTTTTTTATAAACTTGATGTAGTACCAATAGATAATGATAATACAAGTTATACATTGATAAATTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCTATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAGGATAAGAAGTTCAATGGATCAGGACCATGTAAAAATGTCAGCACAGTACAATGTACACATGGAATTAAGCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTTTAGCAGAAGAAGAGGTAGTAATTAGATCTGAAAATTTCACGAACAATGCTAAAACCATAATAGTACATCTGAAGGAACCTATACAAATTAATTGTACAAGACCCAACAACAATACAATGAAAAGTATCCCTCTAGGACCAGGAAGAGCATTCTATGCAACAGGAGCCATAATAGGAGATATAAGACAAGCACATTGTAACCTTAGTAGAAAAGCATGGAATAATACTTTAAAACAGGTAGTTGAAAAATTAAAAGAACAATATGAGAATAAAACAATAATCTTTAATCACTCCTCAGGAGGGGACCCAGAAATTATAATGCATACTTTTAATTGTGGAGGGGAATTTTTCTATTGTAATACAACACAGCTGTTTAATAGTACTTGGAATAGTACTTGGACTGGGAATGCTACCGAATTAGATGGAAACATCACACTCCCATGCAGAATAAAACAGATTATAAACAGGTGGCAAGAAGTAGGAAAAGCAATGTATGCCCCTCCCATTAGAGGAAAAATTAGATGTTCATCAAATATTACAGGGTTACTATTAGTAAGAGATGGTGGTAACACGAGCGAGACTGAGACCTTCAGACCTGGAGGAGGAGATATGAAGGACAATTGGAGGAGTGAATTATATAAATATAAAGTAGAAAAAATTGAGCCATTAGGAGTAGCACCCACCAGGGCAAAGAGAAGAGTGGTGCAAAGAGAAAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAAGCCAGGCTGTTATTGTCTGGTATAGTGCAACAGCAAAACAATTTGCTGAGAGCTATTGAGGCGCAACAACATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTACAGGATCAACAGCGCCTGGGAATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCCTGGAATGCTAGTTGGAGTAATAAATCTCTGAATCAGATTTGGGATAACATGACCTGGATGGAGTGGGAAAGAGAAATTAACAATTACACAGACACAATATACACCTTAATTGAAAAGGCGCAGAACCAGCAGGAAAAAAATGAACAAGAATTATTGGAATTGGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAAATGGCTGTGGTACATAAAATTATTCATAATGATAGTAGGAGGATTGATAGGTTTAAGAATAGTTTTTGCTGTACTTGCTATAGTAAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGCCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAGCTTATTCAATGTCACAGCCATCGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAAGAGCTTGTAGAGCTCTTCTCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCATTGTTATAA" @@ -3855,7 +3855,7 @@ "subtype_start": 8376, "subtype_end": 8469, "orientation": "forward", - "distance": 0.28666666666666596, + "distance": 0.3161764705882347, "protein": "RPTSQPRGDPTGPKESKKKVEKETETDQFD", "aminoacids": "RPTSQPRGDPTGPKESKKKVEKETETDQFD**", "nucleotides": "AGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGA" @@ -3867,7 +3867,7 @@ "subtype_start": 8377, "subtype_end": 8653, "orientation": "forward", - "distance": 0.39560439560439553, + "distance": 0.38952607660679506, "protein": "DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVPLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE", "aminoacids": "DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVPLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE*CY*", "nucleotides": "GACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGCCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAG" @@ -3879,7 +3879,7 @@ "subtype_start": 8796, "subtype_end": 9417, "orientation": "forward", - "distance": 0.6162601626016186, + "distance": 0.49848743916874616, "protein": "MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPMSLHGMEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC", "aminoacids": "MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPMSLHGMEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC*H*", "nucleotides": "ATGGGGGGCAAGTGGTCAAAAAGTAGTGGGGGTGGATGGCCTGCTGTAAGGGAAAGAATGAGACGAACTGAGCCAGCAGCAGAAGGGGTGGGAGCAGTATCTCGAGACCTGGAAAGACATGGAGCAGTCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGCGCCTGGCTGGAAGCACAAGAAGAGGACAGTGAAGTGGGTTTTCCAGTCAGACCTCAGGTGCCTTTAAGACCAATGACTTTCAAAGGAGCTCTCGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCCCAAAAAAGACAAGATATCCTTGACCTGTGGGTCTACAACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGACCAGATATCCACTGACCTTTGGGTGGTGTTTCAAGCTAGTACCAGTGGAGCCAGAAGAGGCCAATCAAGGAGAGAACAACTGCTTGTTACACCCTATGAGCCTGCATGGGATGGAGGACCCGGAAAAAGAAGTATTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCACATGGCCCGAGAGAAGCATCCGGAGTACTACAAAGACTGCTGACATTGA" @@ -3893,7 +3893,7 @@ "subtype_start": 789, "subtype_end": 2292, "orientation": "forward", - "distance": 0.25119999999999987, + "distance": 0.28833792470156094, "protein": "MGARASILSGGKLDEWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSANVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE", "aminoacids": "MGARASILSGGKLDEWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSANVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE*R*", "nucleotides": "ATGGGTGCGAGAGCGTCAATATTAAGCGGGGGAAAATTAGATGAATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATTTAGTATGGGCAAGCAGGGAGCTAGAACGATTTGCCGTTAACCCTGGCCTGTTAGAAACATCAGAGGGATGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATTTAATGCAGTAGCAGTCCTCTATTGTGTACATCAAAGGATACAGGTACAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGTAGCAGCAGCTGACACTGACACAGGAAACAGCAGCCAAAATTACCCCATAGTGCAGAACCTCCAGGGGCAAATGGTACATCAGCCCCTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAAAAGGCCTTCAGCCCAGAAGTCATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCTTGGGATTAAATAAAATAGTAAGGATGTATAGCCCTACCAGTATTCTGGATATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAGAACTTTAAGAGCTGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATTCGAATCCAGATTGTAAGACTATTTTAAAAGCATTAGGACCAGCAGCGACACTAGAGGAAATGATGACAGCATGTCAAGGAGTGGGGGGACCAGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAAATTCAGCTAATGTAATGATGCAGAGAGGCAATTTTAGAAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACATCAAATGAAAGACTGTACAGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAG" @@ -3905,7 +3905,7 @@ "subtype_start": 2084, "subtype_end": 5096, "orientation": "forward", - "distance": 0.14456630109670976, + "distance": 0.1890827530448842, "protein": "FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED", "aminoacids": "FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*", "nucleotides": "TTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAGGGGGGCAATTTAAAGAAGCTTTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACCCATAGAAATCTGTGGACACAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGCTTGGTTGTACCTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTCAATAAGAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAATTCCCTTAGATAAAGAATTCAGGAAGTATACTGCATTTACCATACCTAGTACAAATAATGAGACACCAGGGATTAGGTATGAGTACAATGTGCTGCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGCAAAATCCAGATATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAACTGAGACAACATCTGTTAAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAGTGGACAGTACAGCCTATAATACTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTACGCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAAGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTTTAAGAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGCAATGGACAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTACAAAAGATAGCCACAGAAAGCATAGTAATATGGGGAAAAACTCCTAAATTTAGACTACCTATACAAAAAGAAACATGGGAGACATGGTGGGCAGAGTACTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAATTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACTAAATTAGGCAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAGGTTATCTCCCTAACGGACACAACAAATCAAAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATCAGAAGTAAACATAGTAACAGACTCACAATATACATTAGGAATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAATCAGATAATAGAGCAGTTAATAAAAAAGGAAAAAGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGACAAACTAGTCAGTGCTGGAGTCAGGAGAGTACTATTTCTAGATGGAATAGATAAGGCCCAAGAAGACCATGAGAAATATCACAGTAATTGGAGAGCAATGGCTGGTGATTTTAATATACCCCCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCAAAAAGGAGAGGCCATGCATGGACAAGTAGATTGTAGTCCAGGAATATGGCAACTAGATTGTACACATCTAGAAGGGAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTCTCCTGAAACTAGCAGGGAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTAATGTGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCCATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTATAGTGCAGGGGAAAGAATAGTAGATATAATAGCAACAGACCTACAAACTAAAGAATTACAGAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGGAGAAAAGCAAAAATCATTAGGGATTATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG" @@ -3917,7 +3917,7 @@ "subtype_start": 5040, "subtype_end": 5619, "orientation": "forward", - "distance": 0.35416666666666674, + "distance": 0.36355859709153127, "protein": "MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH", "aminoacids": "MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH*", "nucleotides": "ATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATGTTTCAAAGAAAACTAAAGGATGGTTTTATAGACATCACTATGAAAGCACTCATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTGGTAGTAACAACATATTGGGGCCTGAATACAGGAGAAAGAGAATGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGAAAAAGGAAATATAGCACACAAGTTGACCCTAACCTAGCAGACCAACTAATTCATCTGTATTATTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACATATAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGCTCTCTACAATACTTGGCACTAAAAGCATTAACAACACCAAAGAGAAGAAAGCCACCTTTACCTAGTGTTAGGAAACTGACAGAGGATAGATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAG" @@ -3929,7 +3929,7 @@ "subtype_start": 5558, "subtype_end": 5850, "orientation": "forward", - "distance": 0.4038461538461544, + "distance": 0.39444027047332864, "protein": "MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS", "aminoacids": "MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS*T", "nucleotides": "ATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAGAGCTTTTAGAGGAACTTAAGAATGAAGCGGTTAGACATTTTCCTAGGCCGTGGCTCCATGGCTTAGGACAACATATCTATGAAACTTATGGGGACACTTGGACAGGAGTGGAGGCCATAATAAGAACCCTGCAACAACTGCTGTTTATTCATTTCAGACTTGGGTGTCGACATAGCAGAATAGGCATTGTGCCACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACT" @@ -3941,7 +3941,7 @@ "subtype_start": 5830, "subtype_end": 6045, "orientation": "forward", - "distance": 0.29166666666666674, + "distance": 0.31992687385740404, "protein": "MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ", "aminoacids": "MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ", "nucleotides": "ATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCACCCAGGAAGTCAGCCTAAAACTCCTTGTACTAACTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAAAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAG" @@ -3953,7 +3953,7 @@ "subtype_start": 5969, "subtype_end": 6045, "orientation": "forward", - "distance": 0.5769230769230769, + "distance": 0.48200514138817474, "protein": "MAGRSGDSDEELLKAVRLIKILYQSS", "aminoacids": "MAGRSGDSDEELLKAVRLIKILYQSS", "nucleotides": "ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGT" @@ -3965,7 +3965,7 @@ "subtype_start": 6061, "subtype_end": 6310, "orientation": "forward", - "distance": 0.6500000000000001, + "distance": 0.5118110236220472, "protein": "MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAEDSGNESEGDQEELSALMEMGHHAPGDVDDL", "aminoacids": "MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAEDSGNESEGDQEELSALMEMGHHAPGDVDDL*", "nucleotides": "ATGCAACCTCTGCACATAGCAGCAATAGTAGGATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGACCATAGTGTTAATAGAATATAGGAAAATATTAAGACAAAAAAGGATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAG" @@ -3977,7 +3977,7 @@ "subtype_start": 6224, "subtype_end": 8795, "orientation": "forward", - "distance": 0.49649532710280364, + "distance": 0.4446909136567194, "protein": "MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTSEAHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRNKMQKEYALFYKLDVVPIDKDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYENKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSGTETFRPGGGDMKDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL", "aminoacids": "MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTSEAHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRNKMQKEYALFYKLDVVPIDKDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYENKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSGTETFRPGGGDMKDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL*", "nucleotides": "ATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTGACAGTCTATTATGGGGTACCTGTATGGAAAGAAGCAAACACCACTCTATTTTGTGCATCGGATGCTAAAGCATATACCTCAGAGGCACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGGATTGGAAAATGTGACAGAAAATTTTAACATGTGGAAAAATAACATGGTAGAACAGATGCATGAGGATGTAATCAATTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCACTAATCTGAATGTTACTAATACCAATAGCAGTAGTGAGGAGGGAAAGATGGCGGAAGAAATGAGAAACTGCTCTTTCAATATCACCACAAAAATAAGAAATAAGATGCAGAAGGAATATGCACTTTTTTATAAACTTGATGTAGTACCAATAGATAAGGATAATACAAGTTATACATTGATAAATTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCTATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAGGATAAGAAGTTCAATGGATCAGGACCATGTAAAAATGTCAGCACAGTACAATGTACACATGGAATTAAGCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTTTAGCAGAAGAAGAGGTAGTAATTAGATCTGAAAATTTCACGAACAATGCTAAAACCATAATAGTACATCTGAAGGAACCTATACAAATTAATTGTACAAGACCCAACAACAATACAATGAAAAGTATCCCTCTAGGACCAGGAAGAGCATTCTATGCAACAGGAGCCATAATAGGAGATATAAGACAAGCACATTGTAACCTTAGTAGAAAAGCATGGAATAATACTTTAAAACAGGTAGTTGAAAAATTAAAAGAACAATATGAGAATAAAACAATAATCTTTAATCACTCCTCAGGAGGGGACCCAGAAATTATAATGCATACTTTTAATTGTGGAGGGGAATTTTTCTATTGTAATACAACACAGCTGTTTAATAGTACTTGGAATAGTACTTGGACTGGGAATGCTACCGAATTAGATGGAAACATCACACTCCCATGCAGAATAAAACAGATTATAAACAGGTGGCAAGAAGTAGGAAAAGCAATGTATGCCCCTCCCATTAGAGGAAAAATTAGATGTTCATCAAATATTACAGGGTTACTATTAGTAAGAGATGGTGGTAACACGAGCGGGACTGAGACCTTCAGACCTGGAGGAGGAGATATGAAGGACAATTGGAGGAGTGAATTATATAAATATAAAGTAGTAAAAATTGAGCCATTAGGAGTAGCACCCACCAGGGCAAAGAGAAGAGTGGTGCAAAGAGAAAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAAGCCAGGCTGTTATTGTCTGGTATAGTGCAACAGCAAAACAATTTGCTGAGAGCTATTGAGGCGCAACAACATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTACAGGATCAACAGCGCCTGGGAATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCCTGGAATGCTAGTTGGAGTAATAAATCTCTGAATCAGATTTGGGATAACATGACCTGGATGGAGTGGGAAAGAGAAATTAACAATTACACAGACACAATATACACCTTAATTGAAAAGGCGCAGAACCAGCAGGAAAAGAATGAACAAGAATTATTGGAATTGGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAAATGGCTGTGGTACATAAAATTATTCATAATGATAGTAGGAGGATTGATAGGTTTAAGAATAGTTTTTGCTGTACTTGCTATAGTAAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGCCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAGCTTATTCAATGTCACAGCCATCGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAAGAGCTTGTAGAGCTCTTCTCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCATTGTTATAA" @@ -3989,7 +3989,7 @@ "subtype_start": 8376, "subtype_end": 8469, "orientation": "forward", - "distance": 0.28666666666666596, + "distance": 0.3161764705882347, "protein": "RPTSQPRGDPTGPKESKKKVEKETETDQFD", "aminoacids": "RPTSQPRGDPTGPKESKKKVEKETETDQFD**", "nucleotides": "AGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGA" @@ -4001,7 +4001,7 @@ "subtype_start": 8377, "subtype_end": 8653, "orientation": "forward", - "distance": 0.39560439560439553, + "distance": 0.38952607660679506, "protein": "DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVPLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE", "aminoacids": "DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVPLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE*CY*", "nucleotides": "GACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGCCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAG" @@ -4013,7 +4013,7 @@ "subtype_start": 8796, "subtype_end": 9417, "orientation": "forward", - "distance": 0.6162601626016186, + "distance": 0.49848743916874616, "protein": "MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPMSLHGMEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC", "aminoacids": "MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPMSLHGMEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC*H*", "nucleotides": "ATGGGGGGCAAGTGGTCAAAAAGTAGTGGGGGTGGATGGCCTGCTGTAAGGGAAAGAATGAGACGAACTGAGCCAGCAGCAGAAGGGGTGGGAGCAGTATCTCGAGACCTGGAAAGACATGGAGCAGTCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGCGCCTGGCTGGAAGCACAAGAAGAGGACAGTGAAGTGGGTTTTCCAGTCAGACCTCAGGTGCCTTTAAGACCAATGACTTTCAAAGGAGCTCTCGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCCCAAAAAAGACAAGATATCCTTGACCTGTGGGTCTACAACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGACCAGATATCCACTGACCTTTGGGTGGTGTTTCAAGCTAGTACCAGTGGAGCCAGAAGAGGCCAATCAAGGAGAGAACAACTGCTTGTTACACCCTATGAGCCTGCATGGGATGGAGGACCCGGAAAAAGAAGTATTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCACATGGCCCGAGAGAAGCATCCGGAGTACTACAAAGACTGCTGACATTGA" @@ -4027,7 +4027,7 @@ "subtype_start": 789, "subtype_end": 2292, "orientation": "forward", - "distance": 0.2571999999999999, + "distance": 0.2932056543547651, "protein": "MGARASILSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWTTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSANVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE", "aminoacids": "MGARASILSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWTTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSANVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE*R*", "nucleotides": "ATGGGTGCGAGAGCGTCAATATTAAGCGGGGGAAAATTAGATGCATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATTTAGTATGGGCAAGCAGGGAGCTAGAACGATTTGCCGTTAACCCTGGCCTGTTAGAAACATCAGAGGGATGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATTTAATGCAGTAGCAGTCCTCTATTGTGTACATCAAAGGATACAGGTACAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGTAGCAGCAGCTGACACTGACACAGGAAACAGCAGCCAAAATTACCCCATAGTGCAGAACCTCCAGGGGCAAATGGTACATCAGCCCCTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAAAAGGCCTTCAGCCCAGAAGTCATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGACGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCTTGGGATTAAATAAAATAGTAAGGATGTATAGCCCTACCAGTATTCTGGATATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAGAACTTTAAGAGCTGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATTCGAATCCAGATTGTAAGACTATTTTAAAAGCATTAGGACCAGCAGCAACACTAGAGGAAATGATGACAGCATGTCAAGGAGTGGGGGGACCAGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAAATTCAGCTAATGTAATGATGCAGAGAGGCAATTTTAGAAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACATCAAATGAAAGACTGTACAGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAG" @@ -4039,7 +4039,7 @@ "subtype_start": 2084, "subtype_end": 5096, "orientation": "forward", - "distance": 0.14755732801595212, + "distance": 0.1922427454342348, "protein": "FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSTGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED", "aminoacids": "FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSTGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*", "nucleotides": "TTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAGGGGGGCAATTTAAAGAAGCTTTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACCCATAGAAATCTGTGGACACAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGCTTGGTTGTACCTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTCAATAAGAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAATTCCCTTAGATAAAGAATTCAGGAAGTATACTGCATTTACCATACCTAGTACAAATAATGAGACACCAGGGATTAGGTATGAGTACAATGTGCTGCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGCAAAATCCAGATATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAACTGAGACAACATCTGTTAAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAGTGGACAGTACAGCCTATAATACTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTACGCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAGGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTTTAAGAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGCAATGGACAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTACAAAAGATAGCCACAGAAAGCATAGTAATATGGGGAAAAACTCCTAAATTTAGACTACCTATACAAAAAGAAACATGGGAGACATGGTGGGCAGAGTACTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAATTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACTAAATTAGGCAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAGGTTATCTCCCTAACGGACACAACAAATCAAAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATCAGAAGTAAACATAGTAACAGACTCACAATATACATTAGGAATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAATCAGATAATAGAGCAGTTAATAAAAAAGGAAAAAGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGACAAACTAGTCAGTACTGGAGTCAGGAGAGTACTATTTCTAGATGGAATAGATAAGGCCCAAGAAGACCATGAGAAATATCACAGTAATTGGAGAGCAATGGCTGGTGATTTTAATATACCCCCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCAAAAAGGAGAGGCCATGCATGGACAAGTAGATTGTAGTCCAGGAATATGGCAACTAGATTGTACACATCTAGAAGGGAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTCTCCTGAAACTAGCAGGGAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTAATGTGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCCATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTATAGTGCAGGGGAAAGAATAGTAGATATAATAGCAACAGACCTACAAACTAAAGAATTACAGAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGGAGAAAAGCAAAAATCATTAGGGATTATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG" @@ -4051,7 +4051,7 @@ "subtype_start": 5040, "subtype_end": 5619, "orientation": "forward", - "distance": 0.35416666666666674, + "distance": 0.36355859709153127, "protein": "MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH", "aminoacids": "MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH*", "nucleotides": "ATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATGTTTCAAAGAAAACTAAAGGATGGTTTTATAGACATCACTATGAAAGCACTCATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTGGTAGTAACAACATATTGGGGCCTGAATACAGGAGAAAGAGAATGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGAAAAAGGAAATATAGCACACAAGTTGACCCTAACCTAGCAGACCAACTAATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACATATAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGCTCTCTACAATACTTGGCACTAAAAGCATTAACAACACCAAAGAGAAGAAAGCCACCTTTACCTAGTGTTAGGAAACTGACAGAGGATAGATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAG" @@ -4063,7 +4063,7 @@ "subtype_start": 5558, "subtype_end": 5850, "orientation": "forward", - "distance": 0.4038461538461544, + "distance": 0.39444027047332864, "protein": "MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS", "aminoacids": "MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS*T", "nucleotides": "ATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAGAGCTTTTAGAGGAACTTAAGAATGAAGCGGTTAGACATTTTCCTAGGCCGTGGCTCCATGGCTTAGGACAACATATCTATGAAACTTATGGGGACACTTGGACAGGAGTGGAGGCCATAATAAGAACCCTGCAACAACTGCTGTTTATTCATTTCAGACTTGGGTGTCGACATAGCAGAATAGGCATTGTGCCACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACT" @@ -4075,7 +4075,7 @@ "subtype_start": 5830, "subtype_end": 6045, "orientation": "forward", - "distance": 0.29166666666666674, + "distance": 0.31992687385740404, "protein": "MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ", "aminoacids": "MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ", "nucleotides": "ATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCACCCAGGAAGTCAGCCTAAAACTCCTTGTACTAACTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAAAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAG" @@ -4087,7 +4087,7 @@ "subtype_start": 5969, "subtype_end": 6045, "orientation": "forward", - "distance": 0.5769230769230769, + "distance": 0.48200514138817474, "protein": "MAGRSGDSDEELLKAVRLIKILYQSS", "aminoacids": "MAGRSGDSDEELLKAVRLIKILYQSS", "nucleotides": "ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGT" @@ -4099,7 +4099,7 @@ "subtype_start": 6061, "subtype_end": 6310, "orientation": "forward", - "distance": 0.6865853658536587, + "distance": 0.5254806794847863, "protein": "MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAKDSGNESEGDQEELSALMEMGHHAPGDVDDL", "aminoacids": "MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAKDSGNESEGDQEELSALMEMGHHAPGDVDDL*", "nucleotides": "ATGCAACCTCTGCACATAGCAGCAATAGTAGGATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGACCATAGTGTTAATAGAATATAGGAAAATATTAAGACAAAAAAGGATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAAAAGACAGTGGCAATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAG" @@ -4111,7 +4111,7 @@ "subtype_start": 6224, "subtype_end": 8795, "orientation": "forward", - "distance": 0.49135514018691584, + "distance": 0.4421225244922844, "protein": "MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEAHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRNKMQKEYALFYKLDVVPIDNDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYENKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSETETFRPGGGDMKDNWRSELYKYKVEKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL", "aminoacids": "MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTEAHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRNKMQKEYALFYKLDVVPIDNDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYENKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSETETFRPGGGDMKDNWRSELYKYKVEKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL*", "nucleotides": "ATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTGACAGTCTATTATGGGGTACCTGTATGGAAAGAAGCAAACACCACTCTATTTTGTGCATCGGATGCTAAAGCATATACCACAGAGGCACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGGATTGGAAAATGTGACAGAAAATTTTAACATGTGGAAAAATAACATGGTAGAACAGATGCATGAGGATGTAATCAATTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCACTAATCTGAATGTTACTAATACCAATAGCAGTAGTGAGGAGGGAAAGATGGCGGAAGAAATGAGAAACTGCTCTTTCAATATCACCACAAAAATAAGAAATAAGATGCAGAAGGAATATGCACTTTTTTATAAACTTGATGTAGTACCAATAGATAATGATAATACAAGTTATACATTGATAAATTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCTATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAGGATAAGAAGTTCAATGGATCAGGACCATGTAAAAATGTCAGCACAGTACAATGTACACATGGAATTAAGCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTTTAGCAGAAGAAGAGGTAGTAATTAGATCTGAAAATTTCACGAACAATGCTAAAACCATAATAGTACATCTGAAGGAACCTATACAAATTAATTGTACAAGACCCAACAACAATACAATGAAAAGTATCCCTCTAGGACCAGGAAGAGCATTCTATGCAACAGGAGCCATAATAGGAGATATAAGACAAGCACATTGTAACCTTAGTAGAAAAGCATGGAATAATACTTTAAAACAGGTAGTTGAAAAATTAAAAGAACAATATGAGAATAAAACAATAATCTTTAATCACTCCTCAGGAGGGGACCCAGAAATTATAATGCATACTTTTAATTGTGGAGGGGAATTTTTCTATTGTAATACAACACAGCTGTTTAATAGTACTTGGAATAGTACTTGGACTGGGAATGCTACCGAATTAGATGGAAACATCACACTCCCATGCAGAATAAAACAGATTATAAACAGGTGGCAAGAAGTAGGAAAAGCAATGTATGCCCCTCCCATTAGAGGAAAAATTAGATGTTCATCAAATATTACAGGGTTACTATTAGTAAGAGATGGTGGTAACACGAGCGAGACTGAGACCTTCAGACCTGGAGGAGGAGATATGAAGGACAATTGGAGGAGTGAATTATATAAATATAAAGTAGAAAAAATTGAGCCATTAGGAGTAGCACCCACCAGGGCAAAGAGAAGAGTGGTGCAAAGAGAAAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAAGCCAGGCTGTTATTGTCTGGTATAGTGCAACAGCAAAACAATTTGCTGAGAGCTATTGAGGCGCAACAACATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTACAGGATCAACAGCGCCTGGGAATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCCTGGAATGCTAGTTGGAGTAATAAATCTCTGAATCAGATTTGGGATAACATGACCTGGATGGAGTGGGAAAGAGAAATTAACAATTACACAGACACAATATACACCTTAATTGAAAAGGCGCAGAACCAGCAGGAAAAAAATGAACAAGAATTATTGGAATTGGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAAATGGCTGTGGTACATAAAATTATTCATAATGATAGTAGGAGGATTGATAGGTTTAAGAATAGTTTTTGCTGTACTTGCTATAGTAAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGCCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAGCTTATTCAATGTCACAGCCATCGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAAGAGCTTGTAGAGCTCTTCTCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCATTGTTATAA" @@ -4123,7 +4123,7 @@ "subtype_start": 8376, "subtype_end": 8469, "orientation": "forward", - "distance": 0.28666666666666596, + "distance": 0.3161764705882347, "protein": "RPTSQPRGDPTGPKESKKKVEKETETDQFD", "aminoacids": "RPTSQPRGDPTGPKESKKKVEKETETDQFD**", "nucleotides": "AGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGA" @@ -4135,7 +4135,7 @@ "subtype_start": 8377, "subtype_end": 8653, "orientation": "forward", - "distance": 0.39560439560439553, + "distance": 0.38952607660679506, "protein": "DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVPLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE", "aminoacids": "DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVPLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE*CY*", "nucleotides": "GACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGCCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAG" @@ -4147,7 +4147,7 @@ "subtype_start": 8796, "subtype_end": 9417, "orientation": "forward", - "distance": 0.6162601626016186, + "distance": 0.49848743916874616, "protein": "MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPMSLHGMEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC", "aminoacids": "MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPMSLHGMEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC*H*", "nucleotides": "ATGGGGGGCAAGTGGTCAAAAAGTAGTGGGGGTGGATGGCCTGCTGTAAGGGAAAGAATGAGACGAACTGAGCCAGCAGCAGAAGGGGTGGGAGCAGTATCTCGAGACCTGGAAAGACATGGAGCAGTCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGCGCCTGGCTGGAAGCACAAGAAGAGGACAGTGAAGTGGGTTTTCCAGTCAGACCTCAGGTGCCTTTAAGACCAATGACTTTCAAAGGAGCTCTCGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCCCAAAAAAGACAAGATATCCTTGACCTGTGGGTCTACAACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGACCAGATATCCACTGACCTTTGGGTGGTGTTTCAAGCTAGTACCAGTGGAGCCAGAAGAGGCCAATCAAGGAGAGAACAACTGCTTGTTACACCCTATGAGCCTGCATGGGATGGAGGACCCGGAAAAAGAAGTATTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCACATGGCCCGAGAGAAGCATCCGGAGTACTACAAAGACTGCTGACATTGA" @@ -4161,7 +4161,7 @@ "subtype_start": 789, "subtype_end": 2292, "orientation": "forward", - "distance": 0.2866000000000015, + "distance": 0.31612618574895324, "protein": "MGARASVLSGGELDKWEKIRLRPGGRKRYKLKHIVWASRELERFAVNPGLLETSEGCKQIMGQLQPALQTGSEELRSLYNTVAVLYCVHQRIDVKDTKEALDKIEEEQNKSKKKTQQAAAADTGNNSQVSQNYPIVQNMQGQMVHQAISPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVQAGPVAPGQIREPRGSDIAGTTSTLQEQIAWMTHNPPVPVGEIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKGWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQGVGGPSHKARVLAEAMSQATGAHAIMMQRGNFKNQRKTVKCFNCGKEGHIARNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESLRPTAPPVESFRFGEETAAPFQKQEPRDKEMSPLASLKSLFGNDQ", "aminoacids": "MGARASVLSGGELDKWEKIRLRPGGRKRYKLKHIVWASRELERFAVNPGLLETSEGCKQIMGQLQPALQTGSEELRSLYNTVAVLYCVHQRIDVKDTKEALDKIEEEQNKSKKKTQQAAAADTGNNSQVSQNYPIVQNMQGQMVHQAISPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVQAGPVAPGQIREPRGSDIAGTTSTLQEQIAWMTHNPPVPVGEIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKGWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQGVGGPSHKARVLAEAMSQATGAHAIMMQRGNFKNQRKTVKCFNCGKEGHIARNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESLRPTAPPVESFRFGEETAAPFQKQEPRDKEMSPLASLKSLFGNDQ*SQ*", "nucleotides": "ATGGGTGCGAGAGCGTCAGTATTAAGCGGCGGCGAATTAGACAAATGGGAAAAAATTCGGTTAAGGCCAGGAGGAAGGAAACGATATAAATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGCTTCGCAGTCAACCCTGGCCTGTTAGAAACATCAGAAGGCTGCAAACAAATAATGGGACAACTCCAACCAGCCCTTCAGACAGGATCAGAAGAACTTAGATCATTATATAATACAGTAGCAGTCCTCTATTGTGTACATCAGAGGATAGATGTAAAGGATACCAAAGAAGCTTTAGACAAAATAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGACACAGCAAGCAGCAGCCGCTGACACAGGAAACAACAGCCAAGTCAGCCAAAATTACCCCATAGTGCAGAACATGCAGGGACAAATGGTACATCAGGCCATATCACCCAGAACCCTAAATGCATGGGTAAAAGTAATAGAAGAGAAGGCATTCAGCCCAGAAGTAATACCCATGTTTTCAGCACTATCAGAGGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATCAATGAGGAGGCTGCAGAATGGGATAGAGTGCATCCAGTGCAGGCAGGACCTGTTGCACCAGGCCAGATAAGGGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGATGACACATAATCCACCCGTCCCAGTAGGAGAAATCTATAAAAGATGGATAATCTTGGGACTAAATAAAATAGTAAGGATGTATAGCCCTGTCAGCATTTTGGACATAAGACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAAGACTCTAAGAGCTGAGCAAGCTTCACAGGAAGTAAAAGGTTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAACCCAGATTGTAAGACCATTTTAAAAGCATTGGGACCAGGAGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCCAGCCATAAGGCAAGGGTTTTGGCAGAAGCAATGAGCCAAGCAACAGGTGCACATGCCATAATGATGCAGAGAGGCAATTTTAAGAACCAAAGAAAGACTGTTAAGTGCTTCAATTGTGGCAAAGAAGGGCATATAGCCAGAAATTGCAGGGCCCCTAGGAAAAGGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGACTGCACTGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGAAGGCCGGGGAATTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAGGAGAGCCTCAGGCCAACAGCCCCACCAGTAGAGAGCTTCAGGTTTGGGGAAGAGACAGCAGCCCCCTTTCAGAAGCAGGAACCGAGAGACAAGGAGATGTCTCCCTTAGCTTCCCTCAAATCACTCTTTGGCAACGACCAGTAGTCACAATAA" @@ -4173,7 +4173,7 @@ "subtype_start": 2084, "subtype_end": 5096, "orientation": "forward", - "distance": 0.18175473579262214, + "distance": 0.22669617986470358, "protein": "FFRENLAFPQGKAGEFPSEQTRANSPTRGEPQANSPTSRELQVWGRDSSPLSEAGTERQGDVSLSFPQITLWQRPVVTIKIGGQIKEALLDTGADDTVLEEMALPGRWKPKMIGGIGGFIKVRQYDQIAIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKIKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPIFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSITVLDVGDAYFSVPLDEEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPEIVIYQYMDDLYVGSDLEIGQHRTKIEELRGHLLKWGFTTPDKKHQKEPPFLWMGYELHPDRWTVQPIKLPEKEIWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPTKELIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKISTESIVIWGKTPKFKLPIQKETWEIWWTDYWQATWIPEWEFVSTPPLVKLWYQLEKEPIVGAETFYVDGASNRETKLGKAGYITDRGRQKVVTLNDTTNQKTELQAILLALQDSGLEANIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKIYLTWVPAHKGIGGNEQVDKLVSTGIRKVLFLDGIDRAQEEHERYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQIDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSNFTSTTVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED", "aminoacids": "FFRENLAFPQGKAGEFPSEQTRANSPTRGEPQANSPTSRELQVWGRDSSPLSEAGTERQGDVSLSFPQITLWQRPVVTIKIGGQIKEALLDTGADDTVLEEMALPGRWKPKMIGGIGGFIKVRQYDQIAIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKIKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPIFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSITVLDVGDAYFSVPLDEEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPEIVIYQYMDDLYVGSDLEIGQHRTKIEELRGHLLKWGFTTPDKKHQKEPPFLWMGYELHPDRWTVQPIKLPEKEIWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPTKELIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKISTESIVIWGKTPKFKLPIQKETWEIWWTDYWQATWIPEWEFVSTPPLVKLWYQLEKEPIVGAETFYVDGASNRETKLGKAGYITDRGRQKVVTLNDTTNQKTELQAILLALQDSGLEANIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKIYLTWVPAHKGIGGNEQVDKLVSTGIRKVLFLDGIDRAQEEHERYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQIDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGSNFTSTTVKAACWWAGVKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQISKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*", "nucleotides": "TTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGAAGGCCGGGGAATTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAGGAGAGCCTCAGGCCAACAGCCCCACCAGTAGAGAGCTTCAGGTTTGGGGAAGAGACAGCAGCCCCCTTTCAGAAGCAGGAACCGAGAGACAAGGAGATGTCTCCCTTAGCTTCCCTCAAATCACTCTTTGGCAACGACCAGTAGTCACAATAAAGATAGGGGGGCAAATAAAGGAAGCTCTATTAGACACAGGAGCAGATGATACAGTATTAGAAGAAATGGCGTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATAGCCATAGAAATTTGTGGACATAAAGCAATTGGTACAGTATTAGTAGGACCTACACCTGTCAATATAATTGGAAGAAATCTATTGACTCAGATTGGTTGCACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAGTTAAAGCCAGGAATGGATGGCCCAAAAATTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATAGGGCCTGAAAATCCATACAATACTCCAATATTTGCCATAAAGAAAAAAGACAGTACTAAGTGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGATTAAAAAAGAAAAAATCAATAACAGTACTGGATGTGGGTGATGCCTATTTTTCAGTTCCCTTAGATGAAGAATTCAGGAAGTATACTGCATTTACCATACCTAGCATAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAATGTAGCATGACAAAAATATTAGAGCCTTTTAGAAAACAAAATCCAGAAATAGTTATCTATCAATACATGGACGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAACTAAGAGGACATCTGTTGAAGTGGGGGTTTACCACACCAGACAAAAAACATCAGAAGGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAGATGGACAGTACAGCCTATAAAGCTGCCAGAGAAAGAAATCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTGAACTGGGCAAGTCAGATTTACCCAGGAATTAAAGTAAAACAATTATGTAAACTCCTTAGGGGAACCAAAGCATTAACAGAAGTAATACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGAGAAATTCTAAAAGAACCAGTACATGGAGTGTATTATGACCCAACAAAAGAATTAATAGCAGAAATACAGAAGCAAGGGCAAGGCCAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCGAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAGAAAATATCTACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTACCCATACAAAAGGAAACATGGGAAATATGGTGGACAGACTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTTAGTACTCCTCCCCTAGTAAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTATGTAGATGGGGCATCTAATAGGGAGACTAAATTAGGAAAAGCAGGATATATTACTGACAGAGGAAGACAAAAGGTTGTCACCCTAAATGACACAACCAATCAAAAGACAGAGTTACAAGCAATTCTTCTAGCATTGCAGGATTCAGGATTAGAAGCAAACATAGTGACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATAAAAGTGAATCAGAGTTAGTCAGTCAAATAATAGAGCAGTTAATAAAAAAGGAAAAGATCTACCTGACATGGGTACCAGCACATAAAGGAATTGGAGGAAATGAGCAAGTAGATAAATTAGTCAGTACTGGGATTAGGAAAGTATTATTTTTAGATGGAATAGATAGGGCCCAAGAAGAGCATGAGAGATATCACAGTAATTGGAGAGCAATGGCTAGTGATTTCAACCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGAGAAGCTATGCATGGACAAATAGACTGTAGTCCAGGAATATGGCAGCTAGATTGTACACACTTAGAAGGAAAAATTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAAACAGGGCAGGAAACAGCATACTTTATCTTAAAATTAGCAGGAAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTACCACAGTTAAGGCCGCCTGTTGGTGGGCGGGGGTCAAGCAGGAATTTGGTATTCCCTACAATCCCCAGAGTCAAGGAGTGGTAGAATCTATGAATAAAGAATTAAAGAAAATAATAGGACAGGTCAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAGTAGATATAATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATTTCAAAAATTCAAAACTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCGGTAGTAATACAGGATAATAGTGACATAAAAGTAGTGCCAAGAAGAAAAGCAAAAATCATTAGGGATTATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG" @@ -4185,7 +4185,7 @@ "subtype_start": 5040, "subtype_end": 5619, "orientation": "forward", - "distance": 0.34375, + "distance": 0.3566796368352788, "protein": "MANRWQVMIVWQVDRMRIRTWNSLVKHHMYVSKKTKGWFYRHHYESTHPKISSEVHIPLGDAELVVTTYWGLQPGERDWHLGQGVSIEWRKGRYRTHVDPNLADQLIHLHYFDCFSESAIRHAILGHRVSPRCEYQAGHNKVGSLQYLALAALRAPKKIKPPLPSVTKLTEDRWNKPQKTKGHRGSHTMNGH", "aminoacids": "MANRWQVMIVWQVDRMRIRTWNSLVKHHMYVSKKTKGWFYRHHYESTHPKISSEVHIPLGDAELVVTTYWGLQPGERDWHLGQGVSIEWRKGRYRTHVDPNLADQLIHLHYFDCFSESAIRHAILGHRVSPRCEYQAGHNKVGSLQYLALAALRAPKKIKPPLPSVTKLTEDRWNKPQKTKGHRGSHTMNGH*", "nucleotides": "ATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGTATGTTTCAAAGAAAACTAAGGGATGGTTTTATAGACATCACTATGAGAGCACTCATCCAAAAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTGAGTTGGTAGTAACAACATATTGGGGTTTGCAGCCAGGGGAAAGGGACTGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGAAAAGGGAGATATAGAACACACGTGGACCCTAACCTAGCAGACCAACTAATTCATCTGCATTACTTTGATTGTTTTTCAGAATCTGCTATAAGACATGCCATATTAGGACATAGAGTTAGCCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGATCTCTACAGTACTTGGCACTAGCAGCATTAAGAGCACCAAAAAAGATAAAGCCACCTTTGCCTAGTGTTACTAAACTAACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACACTAG" @@ -4197,7 +4197,7 @@ "subtype_start": 5558, "subtype_end": 5850, "orientation": "forward", - "distance": 0.44230769230769296, + "distance": 0.41636495293265796, "protein": "MEQAPEDQGPQREPYNEWTLELLEELKQEAVRHFPRPWLHSLGQYIYETYGDTWAGVEAIIRMLQQLLFIHFRIGCQHSRIGIIPQRRARNGSSRS", "aminoacids": "MEQAPEDQGPQREPYNEWTLELLEELKQEAVRHFPRPWLHSLGQYIYETYGDTWAGVEAIIRMLQQLLFIHFRIGCQHSRIGIIPQRRARNGSSRS*P", "nucleotides": "ATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACACTAGAGCTTTTAGAAGAACTTAAGCAGGAAGCTGTTAGGCATTTTCCTAGGCCATGGCTTCATAGCTTAGGGCAATATATCTATGAAACTTATGGGGATACTTGGGCAGGGGTGGAAGCCATAATAAGAATGCTGCAACAACTGCTGTTTATTCATTTCAGAATTGGGTGTCAACATAGCAGAATAGGCATTATCCCACAGAGGAGAGCAAGAAATGGATCCAGTAGATCCTAACCT" @@ -4209,7 +4209,7 @@ "subtype_start": 5830, "subtype_end": 6045, "orientation": "forward", - "distance": 0.6319444444444446, + "distance": 0.5047703572220991, "protein": "MDPVDPNLEPWKHPGSQPKTACNNCYCKKCCLHCQVCFTRKGLGISYGRKKRRRRRGSLKGRQAHQDSLSKQ", "aminoacids": "MDPVDPNLEPWKHPGSQPKTACNNCYCKKCCLHCQVCFTRKGLGISYGRKKRRRRRGSLKGRQAHQDSLSKQ", "nucleotides": "ATGGATCCAGTAGATCCTAACCTAGAGCCCTGGAAGCATCCAGGAAGTCAGCCTAAGACTGCTTGTAACAATTGCTATTGTAAAAAGTGTTGCCTTCATTGCCAAGTTTGTTTCACACGAAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACGGAGACGAGGATCTCTTAAAGGCCGTCAGGCTCATCAAGACTCTCTATCAAAGCAG" @@ -4221,7 +4221,7 @@ "subtype_start": 5969, "subtype_end": 6045, "orientation": "forward", - "distance": 0.8076923076923077, + "distance": 0.5657327586206896, "protein": "MAGRSGDGDEDLLKAVRLIKTLYQSS", "aminoacids": "MAGRSGDGDEDLLKAVRLIKTLYQSS", "nucleotides": "ATGGCAGGAAGAAGCGGAGACGGAGACGAGGATCTCTTAAAGGCCGTCAGGCTCATCAAGACTCTCTATCAAAGCAGT" @@ -4233,7 +4233,7 @@ "subtype_start": 6061, "subtype_end": 6310, "orientation": "forward", - "distance": 0.807317073170732, + "distance": 0.5656185919343815, "protein": "MLSLEVIVAITALVVAGIIAIVVWTIVLIEYRKILRQRKIDKILDRIRERAEDSGNESEGDQEELSALVEMGHNAHHAPWDIND", "aminoacids": "MLSLEVIVAITALVVAGIIAIVVWTIVLIEYRKILRQRKIDKILDRIRERAEDSGNESEGDQEELSALVEMGHNAHHAPWDIND**", "nucleotides": "ATGTTATCTTTAGAAGTAATAGTAGCAATAACAGCATTAGTAGTAGCAGGAATAATAGCAATAGTTGTGTGGACCATAGTACTTATAGAATATAGGAAAATATTAAGACAAAGAAAAATAGACAAGATACTTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAGGGGGATCAGGAAGAATTGTCAGCGCTTGTGGAGATGGGGCACAATGCTCACCATGCTCCTTGGGATATTAATGATTAGTAA" @@ -4245,7 +4245,7 @@ "subtype_start": 6224, "subtype_end": 8795, "orientation": "forward", - "distance": 0.6026869158878512, + "distance": 0.4929200664997806, "protein": "MRVRGIRKNCQRLWRWGTMLTMLLGILMISNATEQLWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEMVLINVTENFNMWKNDMVDQMQEDIVSLWDQSLKPCVKLTPLCVTLNCTNLTIEPNNATKANISGRLEGKGEMTNCSFNVTTSLRDKRKKEYALFYKLDVVATGENNNSFRLISCNTSEITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGKCNNVSIVQCTHGIRPVVSTQLLLNGSLAEEEVVVRSANFSDNTKTIIVQLNKTVVINCTRPNNNTRRSIHIAPGRAFYATGDIIGDIRKAHCNISKEDWNTTLNQVAKKLQEQFENATIDFKPSSGGDPEIVMHSFNCGGEFFYCNTTELFSWNATTKLFTWNATNSNNGTIILPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGGTNGTGNRNETFRPGGGNMKDNWRSELYKYKVVEIKPLGVAPTKAKRRVVQREKRAVTIGAMFLGFLGAAGSTMGAASLTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICTTTVPWNISWSNRTLNNIWDNLTWMQWDTEINNYTNKIYQLLEEAQNQQEKNEQELLELDKWANLWNWFDISNWLWYIKIFILIVGGLIGLRIVFTVLSIVNRVRQGYSPLSFQTRFPVPRGPDRPEGTEEEGGERDRDRSDRLVNGFLTLIWVDLRSLCLFSYHRLRDLLLIVTRIVELLGRRGWEALKYWWNVLQYWSQELKNSAVSLLNATAIVVAEGTDRIIELAQRICRAE", "aminoacids": "MRVRGIRKNCQRLWRWGTMLTMLLGILMISNATEQLWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEMVLINVTENFNMWKNDMVDQMQEDIVSLWDQSLKPCVKLTPLCVTLNCTNLTIEPNNATKANISGRLEGKGEMTNCSFNVTTSLRDKRKKEYALFYKLDVVATGENNNSFRLISCNTSEITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGKCNNVSIVQCTHGIRPVVSTQLLLNGSLAEEEVVVRSANFSDNTKTIIVQLNKTVVINCTRPNNNTRRSIHIAPGRAFYATGDIIGDIRKAHCNISKEDWNTTLNQVAKKLQEQFENATIDFKPSSGGDPEIVMHSFNCGGEFFYCNTTELFSWNATTKLFTWNATNSNNGTIILPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGGTNGTGNRNETFRPGGGNMKDNWRSELYKYKVVEIKPLGVAPTKAKRRVVQREKRAVTIGAMFLGFLGAAGSTMGAASLTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICTTTVPWNISWSNRTLNNIWDNLTWMQWDTEINNYTNKIYQLLEEAQNQQEKNEQELLELDKWANLWNWFDISNWLWYIKIFILIVGGLIGLRIVFTVLSIVNRVRQGYSPLSFQTRFPVPRGPDRPEGTEEEGGERDRDRSDRLVNGFLTLIWVDLRSLCLFSYHRLRDLLLIVTRIVELLGRRGWEALKYWWNVLQYWSQELKNSAVSLLNATAIVVAEGTDRIIELAQRICRAE*DRA*", "nucleotides": "ATGAGAGTGAGGGGGATCAGGAAGAATTGTCAGCGCTTGTGGAGATGGGGCACAATGCTCACCATGCTCCTTGGGATATTAATGATTAGTAATGCTACAGAACAATTGTGGGTCACAGTCTATTATGGGGTACCTGTATGGAAAGAAGCAACAACCACTCTATTCTGTGCATCAGATGCTAAAGCATATGATACAGAGGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAATGGTATTAATAAATGTGACAGAAAATTTTAACATGTGGAAAAATGACATGGTAGATCAAATGCAAGAGGACATAGTCAGCTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACCTTAAATTGCACTAATTTGACCATTGAGCCAAACAATGCTACTAAAGCCAATATTAGTGGGAGGTTAGAGGGGAAAGGAGAAATGACAAACTGCTCTTTCAATGTCACCACAAGCCTAAGAGATAAGAGGAAGAAAGAATATGCACTCTTTTATAAACTTGATGTAGTAGCAACAGGTGAAAATAATAACAGCTTTAGGTTGATAAGTTGTAATACCTCAGAGATTACACAGGCCTGTCCAAAGGTATCATTTGAACCAATTCCCATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAATGATAAAAAGTTCAATGGAACAGGAAAATGTAACAATGTCAGCATAGTACAATGTACACATGGAATTAGGCCAGTAGTATCAACTCAACTGCTGTTAAATGGCAGTCTAGCAGAAGAAGAGGTAGTAGTTAGATCTGCCAATTTCTCAGACAATACTAAGACCATAATAGTACAGCTGAACAAAACTGTAGTAATTAATTGTACAAGACCCAACAACAATACAAGGAGAAGTATACATATAGCACCAGGGAGAGCATTTTATGCAACAGGAGATATAATAGGAGATATAAGAAAAGCACATTGTAACATTAGTAAAGAAGATTGGAATACCACTTTAAACCAGGTGGCTAAAAAATTACAAGAACAATTTGAGAATGCAACAATAGACTTTAAACCATCCTCAGGAGGGGACCCAGAAATTGTAATGCACAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAATACAACGGAACTATTTTCTTGGAATGCTACAACAAAACTGTTTACTTGGAATGCTACAAATAGCAATAATGGAACCATCATACTCCCATGTAGAATAAAACAAATTATAAACATGTGGCAAGAGGTAGGAAAAGCAATGTATGCCCCTCCCATTCGTGGACAAATTAGATGTTCGTCAAATATTACAGGACTGCTATTAACAAGAGATGGTGGGACTAACGGGACAGGGAACAGGAATGAGACCTTCAGACCTGGAGGGGGAAATATGAAGGACAATTGGAGAAGTGAATTATATAAATACAAAGTAGTAGAAATTAAACCATTAGGAGTAGCACCCACCAAGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGACCATAGGAGCTATGTTCCTTGGGTTCCTGGGGGCAGCAGGAAGCACTATGGGCGCAGCATCACTGACGCTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAACAGCAGAACAATCTGCTGAGGGCGATTGAGGCGCAGCAGCATCTGTTGCAACTCACAGTCTGGGGCATAAAACAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGGTACCTAAGAGATCAACAGCTCCTGGGGATTTGGGGCTGCTCTGGAAAACTCATCTGCACCACTACTGTGCCTTGGAATATTAGTTGGAGTAATAGAACTCTGAATAACATTTGGGACAATTTGACTTGGATGCAGTGGGATACAGAAATTAACAATTACACAAACAAAATATACCAATTACTTGAGGAAGCGCAGAACCAGCAGGAAAAGAATGAACAAGAATTATTGGAATTAGATAAATGGGCAAATTTGTGGAATTGGTTTGACATATCAAACTGGCTGTGGTACATAAAAATATTCATATTAATAGTAGGAGGCTTAATAGGTTTAAGAATAGTTTTTACTGTACTTTCTATAGTGAATAGAGTTAGGCAGGGATACTCACCATTATCGTTTCAGACCCGCTTCCCAGTCCCGAGGGGACCCGACAGGCCCGAAGGAACCGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGACAGATTAGTGAACGGATTCTTGACACTTATCTGGGTCGATCTGAGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCACTCAAATATTGGTGGAATGTCCTGCAATATTGGAGTCAGGAACTAAAGAATAGTGCTGTTAGCTTGCTAAATGCCACAGCCATAGTAGTAGCTGAGGGGACAGATAGGATTATAGAATTAGCACAAAGAATTTGTAGAGCAGAATAAGACAGGGCTTGA" @@ -4257,7 +4257,7 @@ "subtype_start": 8376, "subtype_end": 8469, "orientation": "forward", - "distance": 0.6866666666666661, + "distance": 0.5255102040816324, "protein": "RPASQSRGDPTGPKEPKKKVERETETDPTD", "aminoacids": "RPASQSRGDPTGPKEPKKKVERETETDPTD**", "nucleotides": "AGACCCGCTTCCCAGTCCCGAGGGGACCCGACAGGCCCGAAGGAACCGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGACAGATTAGTGA" @@ -4269,7 +4269,7 @@ "subtype_start": 8377, "subtype_end": 8653, "orientation": "forward", - "distance": 0.3296703296703296, + "distance": 0.3471418653089562, "protein": "DPLPSPEGTRQARRNRRRRWRERQRQIRQISERILDTYLGRSEEPVPLQLPPLERLTLDCNEDCGTSGTQGVGSTQILVECPAILESGTKE", "aminoacids": "DPLPSPEGTRQARRNRRRRWRERQRQIRQISERILDTYLGRSEEPVPLQLPPLERLTLDCNEDCGTSGTQGVGSTQILVECPAILESGTKE*CC*", "nucleotides": "GACCCGCTTCCCAGTCCCGAGGGGACCCGACAGGCCCGAAGGAACCGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGACAGATTAGTGAACGGATTCTTGACACTTATCTGGGTCGATCTGAGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCACTCAAATATTGGTGGAATGTCCTGCAATATTGGAGTCAGGAACTAAAGAATAGTGCTGTTAG" @@ -4281,7 +4281,7 @@ "subtype_start": 8796, "subtype_end": 9417, "orientation": "forward", - "distance": 0.658536585365846, + "distance": 0.5150705837466587, "protein": "MGGKWSKHSKSEWADVRERMAQTEAAADGVGAVSRDLERHGAITSSNTATNNAACAWLEAQEEEEVGFPVKPQVPLRPMTYKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRFPLCFGWCFKLVPVDPDKVEEANKGENNSLLHPMSLHGMEDTEREVLMWKFDSRLAFHHVAREKHPEYFKDC", "aminoacids": "MGGKWSKHSKSEWADVRERMAQTEAAADGVGAVSRDLERHGAITSSNTATNNAACAWLEAQEEEEVGFPVKPQVPLRPMTYKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRFPLCFGWCFKLVPVDPDKVEEANKGENNSLLHPMSLHGMEDTEREVLMWKFDSRLAFHHVAREKHPEYFKDC*", "nucleotides": "ATGGGTGGCAAGTGGTCAAAACATAGTAAGAGTGAATGGGCTGATGTAAGGGAAAGAATGGCACAAACTGAGGCAGCAGCAGATGGGGTGGGAGCAGTATCTCGAGATCTGGAAAGACATGGAGCAATCACAAGTAGCAATACAGCAACTAACAATGCTGCTTGTGCTTGGCTAGAAGCACAAGAGGAGGAGGAGGTGGGTTTTCCAGTCAAACCTCAGGTGCCTTTGAGACCAATGACCTACAAGGGAGCTTTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGTTAATTTATTCCCAAAAAAGACAAGACATCCTTGATCTGTGGGTCTACAACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGAACCAGATTCCCACTGTGCTTTGGATGGTGCTTCAAGCTAGTACCAGTTGATCCAGATAAGGTGGAAGAAGCCAATAAAGGAGAGAACAACAGCTTGTTACACCCTATGAGCCTGCATGGGATGGAGGACACCGAGAGAGAGGTGTTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCACGTAGCCAGAGAGAAACATCCGGAGTACTTCAAGGACTGCTGA" @@ -4295,7 +4295,7 @@ "subtype_start": 789, "subtype_end": 2292, "orientation": "forward", - "distance": 1.8384000000000005, + "distance": 0.7478034493979825, "protein": "MTETLLVQNANPDCKTILKALRPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTKSASIMVQGGNLKNQRKNVKCFNCGKEGHTAKNCRAPKKKGC", "aminoacids": "SGFSFTFKSLFGRHLGDLKAKEKPEELSRRRTRLAERARQEARRGD**VRRNF*LAEARRREIGARASVLSGGELDR*EKIYLRPGRKKKYRLKHIVWASRELERFAVNPGLLKSSEGCRQILGQLQPALQTGSEELRSLYNTIAVLYCVHQKINVKDTKEALDKIEEEQNKSKKKAQQAAADTGNSSNSQVSQNYPIVQNLQGQIVHQPISPRTLNA*VKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVRRHQAAMQMLKETINDEAAE*DRLHPVHAGPIAPGQMKEPRRSDIAGTTSTLQEQIR*MTNNPPIPVGEIYKR*IILRLNKIVKMYSPVSILDIRQRPKEPFKDYVDRFYKTLKAEQASQDVKN*MTETLLVQNANPDCKTILKALRPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTKSASIMVQGGNLKNQRKNVKCFNCGKEGHTAKNCRAPKKKGC*KCGKKGHQMKDCTKRQANFLRKIWPSHKGRPKNFLQSRPEPTAPPAESFRFKEEATAPPQKQETKDQELYPLASLRSLFGNDP*YQ*", "nucleotides": "TCTGGTTTCTCTTTCACTTTCAAGTCCCTGTTCGGGCGCCATCTAGGGGACCTGAAAGCGAAAGAGAAACCAGAGGAGCTCTCTCGACGCAGGACTCGGCTTGCTGAGCGCGCACGGCAAGAGGCGAGGCGCGGCGACTAGTGAGTACGCCGAAATTTTTGACTAGCAGAGGCTAGAAGGAGAGAGATAGGTGCGAGAGCGTCAGTATTAAGCGGCGGAGAATTAGATAGATAGGAAAAAATTTACCTAAGGCCAGGGAGAAAGAAAAAATATAGATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTCAACCCTGGCCTGTTAAAGTCATCAGAAGGCTGCAGGCAAATTCTAGGACAGCTACAACCAGCCCTTCAGACAGGATCAGAAGAACTTAGATCATTATATAATACAATAGCAGTCCTCTATTGTGTACATCAAAAGATAAATGTAAAAGACACCAAAGAAGCTCTAGACAAAATAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAACAAGCAGCAGCTGACACAGGAAACAGCAGCAACAGCCAGGTCAGCCAAAATTACCCTATAGTGCAGAACCTACAAGGGCAAATAGTACATCAACCCATATCACCTAGAACTTTAAATGCATAGGTAAAAGTAATAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCACTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGAGAAGACATCAAGCAGCCATGCAGATGTTAAAAGAAACCATCAATGATGAAGCTGCAGAATAAGATAGATTGCATCCAGTGCATGCAGGCCCTATTGCACCAGGCCAGATGAAGGAACCAAGAAGAAGTGACATAGCAGGAACCACTAGTACCCTTCAGGAACAAATAAGATAGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATAGATAATCCTGAGGTTAAATAAAATAGTAAAAATGTATAGCCCTGTCAGCATTTTGGACATAAGACAAAGACCAAAGGAACCCTTTAAGGATTATGTAGACCGGTTCTATAAAACTCTAAAGGCTGAACAAGCGTCACAGGATGTAAAAAATTAGATGACAGAAACCTTGTTAGTCCAAAATGCGAATCCAGATTGTAAGACCATTTTAAAAGCATTAAGACCAGCAGCTACATTAGAAGAAATGATGACAGCATGTCAGGGAGTAGGAGGACCCGGCCACAAGGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAACAAAGTCAGCCTCCATAATGGTGCAAGGAGGCAATTTAAAGAACCAAAGAAAGAATGTTAAGTGTTTCAATTGTGGCAAAGAAGGACACACAGCCAAAAATTGCAGGGCCCCTAAGAAAAAAGGCTGTTAGAAATGTGGAAAGAAAGGACACCAAATGAAAGATTGTACTAAGAGACAGGCTAATTTTTTAAGGAAGATTTGGCCTTCCCACAAGGGAAGGCCAAAGAATTTTCTCCAGAGCAGACCAGAGCCAACAGCCCCGCCAGCAGAGAGCTTCAGGTTTAAGGAAGAGGCAACAGCTCCCCCTCAGAAGCAGGAGACGAAGGACCAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCATAATATCAATAA" @@ -4307,7 +4307,7 @@ "subtype_start": 2084, "subtype_end": 5096, "orientation": "forward", - "distance": 1.9898305084745753, + "distance": 0.7624366800883231, "protein": "KPKIIEGIRGFIKVRQYDQVPIKICRHKAISTVLIRPTPVNIIRRNLLTQLSCTLNFPISPIETVPVKLKPGIDSPKVKQWPLTEEKIKALIEICAEIEKERKITKIRPKNPYNTPVFAIKKKDSTK", "aminoacids": "FFKEDLAFPQGKAKEFSPEQTRANSPASRELQV*GRGNSSPSEAGDEGPGTVSFSFPQITLWQRPIISIKIRRQLKEALLDTGADDTVLKEINLPGK*KPKIIEGIRGFIKVRQYDQVPIKICRHKAISTVLIRPTPVNIIRRNLLTQLSCTLNFPISPIETVPVKLKPGIDSPKVKQWPLTEEKIKALIEICAEIEKERKITKIRPKNPYNTPVFAIKKKDSTK*RKLVDFRELNKRTQDF*KVQLRIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNEAPRVRYQYNVLPQR*KGSPAIFQSSMTKILEPFRKENPDIVIYQYIDDLYVRSDLEIEQHRTKIEELRQHLLK*RLTTPDKKHQKEPPFL*ISYELHPNKWTVQPIQLPDKDS*TVNDIQKLVRKLN*ASQIYPEIKVKQLCKLLRRTKALTEVVPLTEEAELELAENKEILKEPVHRAYYDPSKDLIAEVQKQGGDQWTYQIYQKPFKNLKTKKYARTRGAHTNDVKQLTEAVQKIALEAIVI*RKTPKFKLPIQKET*EM**TEYWQAT*IPE*EFVNTPPLVKL*YQLEKEPIVRAETFYVDRAANRETKLRKARYVTDRRRQKVVSLIDTTNQRTKLHAIHLALQDSGSTVNIVTDSQYALKIIQAQPDKSESELVSQIIEQLIKKEKIYLA*VPAHKRIRRNEQVDKLVSSRIRKVLFLDRIDKAQEEHEKYHSN*RAMASDFNLPPVVAKEIVASCDKCQLKREPMHGQVDCSPGIWQLDCTHLERKIILVAVHVASRYIEAEVIAAETGQETAYFILKLAGRWPVKIIHTDNGSNFTSTTVKAAC**ARIKQKFSIPYNPQSQGVVESMNNELKKIIGQVKDQAEHLKTAVQMAVFIHNFKRKRGIGGYSAEERIIDIIATDIQTKELQKQISKIQNFQVYYRDSREPLWKGPAKLL*KGEGAVVIQDNSDIKVVPRRKAKILRDYGKQMAGDDCVASRQDED*NMEQFSKTPYAYFKESSEMSLQTSP*", "nucleotides": "TTTTTTAAGGAAGATTTGGCCTTCCCACAAGGGAAGGCCAAAGAATTTTCTCCAGAGCAGACCAGAGCCAACAGCCCCGCCAGCAGAGAGCTTCAGGTTTAAGGAAGAGGCAACAGCTCCCCCTCAGAAGCAGGAGACGAAGGACCAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCATAATATCAATAAAAATAAGAAGGCAACTAAAAGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAAAAGAAATAAATTTGCCAGGAAAATAGAAACCAAAAATAATAGAAGGAATTAGAGGTTTTATCAAAGTAAGACAGTATGATCAGGTACCCATAAAAATTTGTAGACATAAAGCTATAAGTACAGTATTAATAAGACCTACACCAGTCAACATAATTAGAAGAAATCTGTTGACCCAGCTTAGTTGCACTTTAAATTTTCCCATCAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATAGATAGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAGGCATTAATAGAAATTTGTGCAGAAATAGAAAAAGAAAGGAAAATTACAAAAATTAGGCCTAAGAATCCATATAATACTCCAGTGTTTGCCATAAAGAAAAAAGACAGTACTAAATAGAGAAAATTAGTAGATTTCCGAGAACTTAATAAAAGAACACAAGACTTTTAAAAAGTTCAACTAAGAATACCACATCCCGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTAGATGTAGGTGATGCATATTTTTCAGTTCCTTTAGACAAAGACTTCAGAAAGTATACTGCATTTACCATACCCAGTATAAACAATGAGGCACCAAGAGTTAGATATCAGTACAATGTGCTTCCACAAAGATAGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAAGAAAATCCAGACATAGTTATCTATCAATACATAGATGATTTGTATGTAAGATCTGACTTAGAAATAGAGCAGCACAGAACAAAAATAGAAGAACTGAGACAACATCTGTTAAAGTAAAGACTCACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTTCTTTAGATAAGTTATGAACTCCATCCTAATAAATGGACAGTACAGCCTATACAGCTGCCAGACAAAGACAGCTAGACTGTCAATGACATACAGAAGTTAGTAAGAAAGTTAAATTAGGCAAGCCAGATCTATCCAGAGATTAAAGTAAAGCAATTATGTAAACTCCTTAGAAGAACCAAAGCACTAACAGAAGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAAGGAGATTCTAAAAGAACCAGTACATAGAGCATATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGAGGAGACCAATGGACATATCAAATTTATCAGAAGCCATTTAAAAATCTGAAAACAAAGAAATATGCAAGAACGAGAGGTGCCCACACTAATGATGTAAAACAGTTAACAGAGGCAGTGCAAAAAATAGCCCTAGAAGCCATAGTAATATAGAGAAAGACTCCTAAATTTAAACTACCTATACAAAAAGAAACATAAGAAATGTAGTAGACAGAGTATTGGCAAGCCACCTAGATTCCTGAGTAGGAATTTGTCAATACCCCTCCCTTAGTAAAATTATAGTACCAGTTAGAGAAAGAACCCATAGTAAGAGCAGAAACTTTCTATGTAGATAGGGCAGCTAATAGAGAGACTAAATTAAGAAAAGCAAGGTATGTTACGGACAGAAGAAGACAAAAAGTTGTCTCCCTAATAGACACAACAAATCAGAGGACTAAGTTACACGCAATTCATCTAGCTTTGCAGGATTCAGGATCAACAGTAAACATAGTGACAGACTCACAATATGCCTTAAAGATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAGTCAAATAATAGAGCAGCTAATAAAAAAAGAAAAAATTTACCTGGCATAAGTCCCAGCACACAAAAGAATTAGAAGAAATGAACAAGTAGATAAATTAGTCAGTAGTAGAATCAGAAAAGTACTATTTCTAGATAGAATAGATAAAGCCCAAGAAGAACATGAAAAATATCACAGTAATTAAAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAGTGTCAGTTAAAAAGAGAACCTATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAACTAGATTGTACACATTTAGAAAGAAAAATTATCCTAGTAGCAGTTCATGTAGCCAGTAGATACATAGAAGCAGAAGTTATTGCAGCAGAAACAGGGCAGGAAACAGCATACTTTATCTTAAAATTGGCAGGAAGATGGCCAGTAAAAATAATACATACAGACAATGGCAGCAATTTCACCAGCACTACAGTTAAGGCCGCCTGTTAGTAGGCAAGGATCAAGCAGAAATTTAGTATTCCCTACAATCCTCAAAGTCAAGGAGTAGTAGAATCTATGAATAATGAATTAAAGAAAATTATAGGACAGGTAAAAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATTCACAATTTTAAAAGAAAAAGGGGGATTGGGGGGTACAGTGCAGAGGAAAGAATAATAGACATAATAGCAACAGACATACAAACTAAAGAACTACAAAAACAAATTTCAAAAATTCAAAATTTTCAGGTTTATTACAGGGACAGCAGAGAACCACTTTGGAAAGGACCAGCAAAGCTCCTCTAGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATCCTTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAAGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATATTTCAAAGAAAGCTCAGAGATGAGTTTACAGACATCACCATGA" @@ -4319,7 +4319,7 @@ "subtype_start": 5040, "subtype_end": 5619, "orientation": "forward", - "distance": 1.8546875000000016, + "distance": 0.7494633160752622, "protein": "MENRWQVMIVWQVDKMRIRTWNSLVKHHMHISKKAQR", "aminoacids": "MENRWQVMIVWQVDKMRIRTWNSLVKHHMHISKKAQR*VYRHHHESHNPKTSSEVHIPLREARLVIKTY*GLHTGERDWHLGQGVSIEWRKKRYSTQVDPGLADQLIHLYYFDCFSESAIRNAILGHRVRPRCEYQAGHNKVGSLQYLALTALITPKRRKPPLPSVTKLTEDRWNKSQRTKGHKRSHTMNGH*", "nucleotides": "ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAAGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATATTTCAAAGAAAGCTCAGAGATGAGTTTACAGACATCACCATGAAAGCCATAATCCAAAAACAAGTTCAGAAGTACACATCCCATTAAGGGAAGCAAGATTAGTAATAAAAACATATTAAGGTCTGCATACAGGAGAAAGAGACTGGCATTTAGGCCAGGGAGTATCCATAGAATGGAGGAAAAAGAGATATAGCACACAAGTAGACCCTGGCCTGGCAGACCAACTAATTCACCTGTATTATTTTGATTGTTTTTCAGAATCTGCTATAAGGAATGCCATATTAGGACATAGAGTTAGGCCTAGGTGTGAATATCAGGCAGGACATAACAAGGTAGGATCCCTACAATACTTGGCATTAACAGCATTAATAACACCAAAAAGGAGAAAGCCACCTTTGCCCAGTGTTACAAAATTAACAGAGGACAGATGGAACAAGTCCCAGAGGACCAAAGGCCACAAAAGGAGCCATACAATGAATGGACATTAG" @@ -4331,7 +4331,7 @@ "subtype_start": 5558, "subtype_end": 5850, "orientation": "forward", - "distance": 0.5961538461538467, + "distance": 0.4901960784313728, "protein": "MEQVPEDQRPQKEPYNEWTLELLEELKSEAVRHFPRPWLHSLGQYIYETYGDTWAEVEAIIRTLQQLLFIHFRIRCQHSRIRIIRQRRARNRASRS", "aminoacids": "MEQVPEDQRPQKEPYNEWTLELLEELKSEAVRHFPRPWLHSLGQYIYETYGDTWAEVEAIIRTLQQLLFIHFRIRCQHSRIRIIRQRRARNRASRS*L", "nucleotides": "ATGGAACAAGTCCCAGAGGACCAAAGGCCACAAAAGGAGCCATACAATGAATGGACATTAGAGCTCTTAGAAGAACTTAAGAGTGAAGCTGTTAGGCATTTTCCTAGACCATGGCTTCATAGCTTAGGACAATATATCTATGAAACTTATGGAGATACTTGGGCAGAGGTAGAAGCCATAATAAGAACCCTGCAACAACTGTTGTTCATTCATTTCAGAATTAGGTGTCAACATAGCAGGATAAGAATTATTCGACAGAGGAGAGCAAGAAATAGAGCCAGTAGATCCTAACTT" @@ -4343,7 +4343,7 @@ "subtype_start": 5830, "subtype_end": 6045, "orientation": "forward", - "distance": 1.1236111111111113, + "distance": 0.6444161223514419, "protein": "MTACNNCYCKRCCFHCQVCFTRKGLGISHGRKKRRQRRRASHSSQNHQAALPEQ", "aminoacids": "MTACNNCYCKRCCFHCQVCFTRKGLGISHGRKKRRQRRRASHSSQNHQAALPEQ*", "nucleotides": "ATGACTGCTTGTAACAATTGCTATTGTAAACGGTGTTGCTTTCATTGCCAAGTTTGCTTCACAAGAAAAGGCTTAGGCATCTCCCATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTTCTCACAGCAGTCAGAATCATCAAGCGGCTCTACCAGAGCAGTAA" @@ -4355,7 +4355,7 @@ "subtype_start": 5969, "subtype_end": 6045, "orientation": "forward", - "distance": 0.6538461538461537, + "distance": 0.5132850241545894, "protein": "MAGRSGDSDEELLTAVRIIKRLYQSS", "aminoacids": "MAGRSGDSDEELLTAVRIIKRLYQSS", "nucleotides": "ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTTCTCACAGCAGTCAGAATCATCAAGCGGCTCTACCAGAGCAGT" @@ -4367,7 +4367,7 @@ "subtype_start": 6061, "subtype_end": 6310, "orientation": "forward", - "distance": 1.3548780487804881, + "distance": 0.6860565641595653, "protein": "SIVLIEYKKILRQKKIDRLIDRIRERAEDSGNESDEDQEELSAIVEIGHLVP", "aminoacids": "MHALEIAAIVRLVVAAIIAIVV*SIVLIEYKKILRQKKIDRLIDRIRERAEDSGNESDEDQEELSAIVEIGHLVP*DSDDM*", "nucleotides": "ATGCATGCCTTAGAAATAGCAGCAATAGTAAGATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTAGTCTATAGTATTAATAGAATATAAGAAAATTTTAAGACAAAAGAAAATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAAAGTGACGAGGACCAGGAAGAATTATCAGCAATTGTAGAGATAGGGCATCTTGTTCCTTAGGATAGTGATGATATGTAG" @@ -4379,7 +4379,7 @@ "subtype_start": 6224, "subtype_end": 8795, "orientation": "forward", - "distance": 1.8721962616822374, + "distance": 0.7512234451465316, "protein": "MTEEGEIKNCSFNVTTGIRDKVTKEHALFYKLDVVPIDESSGNTTGKYRMINCNTSVITQACPKVSFEPIPIHFCAPASFAILKCKDKKFNRTGECRNVSTVQCTHRIRPVVSTQLLLNGSLAEEEIVIRSANLSNNAKTIIVQLNKSVKINCTRPNNNTRRSIHIGPRRAFYRTDIIGDIRQAHCNISRKD", "aminoacids": "MKVTRTRKNYQQL*R*GILFLRIVMICSANNL*VTVYYEVPVWKEATTTLFCASDAKAYKTEKHNVWATHACVPTDPSPQEVALENVTETFNMWKNDMVEQMHEDIISL*DQSLKPCVKLTPLCVTLNCTDELNLNCPNNNTCSNNTKYNMTEEGEIKNCSFNVTTGIRDKVTKEHALFYKLDVVPIDESSGNTTGKYRMINCNTSVITQACPKVSFEPIPIHFCAPASFAILKCKDKKFNRTGECRNVSTVQCTHRIRPVVSTQLLLNGSLAEEEIVIRSANLSNNAKTIIVQLNKSVKINCTRPNNNTRRSIHIGPRRAFYRTDIIGDIRQAHCNISRKD*NDTLKQIVIKLKEKFKNKTIVFNQSSGKDPEIVMHSFNCREEFFYCNTTQLFNST*NNNT*NGTDN*NSTESNSTITLPCRIKQIINLWQEVRRAMYAPPIQGQIRCSSNITGLLLVRDSKSNNSSNDTKTFRPRRGDMKDN*RSELYKYKVVKIEPLRIAPTHAKRRVVQKEKRAIGLRAFFLKFLGAAGSTIGAASVTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTV*GIKQLQARVLALERYLKDQQLLKI*GCSRKLICTTNVP*NVS*SPR*NRSLDKI*TNMT*KQ*EKEIDNYTDTIYNLIEQSQNQQEQNEQDLLALDK*ASL*N*FDITQWL*YIKIFIMIVRGLISLRIVFTILSIVNRVRQRYSPLSLQTLLPTQRGPDRPERTEEGGREKDRGTSTRLVHRFLALI*DDLRSLFLFSYHRLRDLLLIVARIVELLRRRK*EALKYW*NLLQY*SQEIKNSAVSLLNTTAIAVAERTDKIIEVLQRGFRAILHIPTRIRQGLEKALL*", "nucleotides": "ATGAAAGTGACGAGGACCAGGAAGAATTATCAGCAATTGTAGAGATAGGGCATCTTGTTCCTTAGGATAGTGATGATATGTAGTGCCAACAACTTGTAGGTCACAGTCTATTATGAGGTACCTGTATGGAAAGAAGCAACTACCACTCTATTTTGTGCATCAGATGCTAAAGCATATAAGACAGAGAAGCATAATGTTTGGGCAACCCATGCCTGTGTACCCACAGACCCCAGCCCACAGGAAGTAGCATTAGAAAATGTGACAGAAACATTTAACATGTGGAAAAATGACATGGTAGAGCAGATGCATGAGGATATAATCAGTTTATAAGATCAAAGCCTAAAGCCATGTGTGAAACTAACCCCACTCTGTGTTACTTTAAATTGCACTGATGAATTAAATCTAAATTGCCCTAACAATAATACTTGTAGTAATAATACTAAATATAATATGACGGAAGAAGGAGAAATAAAAAACTGCTCTTTCAATGTCACCACAGGAATAAGAGATAAGGTGACAAAAGAACATGCACTTTTCTATAAACTTGATGTAGTACCAATAGATGAAAGTAGTGGAAATACTACAGGCAAATATAGGATGATAAATTGTAACACCTCAGTCATTACACAAGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTTTTGTGCCCCGGCTAGTTTTGCGATTCTAAAGTGTAAAGATAAGAAATTCAATAGAACAGGAGAATGTAGAAATGTCAGCACAGTACAATGTACACATAGAATTAGGCCAGTAGTATCAACTCAACTGCTGCTGAACGGCAGTCTAGCAGAAGAAGAGATAGTAATTAGATCTGCCAATCTCTCGAACAATGCTAAAACCATAATAGTACAGCTGAATAAATCTGTAAAAATTAATTGTACAAGACCCAACAATAATACAAGAAGAAGTATACACATAGGACCAAGGAGGGCATTTTATAGAACAGACATAATAGGAGATATAAGACAAGCGCATTGTAACATTAGTAGGAAAGATTAGAATGACACTTTAAAACAGATAGTTATAAAATTAAAAGAAAAATTTAAGAATAAAACAATAGTCTTTAATCAATCCTCAGGAAAGGACCCAGAGATAGTGATGCATAGTTTTAATTGTAGAGAAGAATTTTTCTACTGTAATACAACACAGCTGTTTAATAGTACTTAGAATAATAATACTTAGAATGGTACTGATAATTAGAATAGTACTGAATCAAATAGCACTATCACACTCCCATGCAGAATAAAACAAATTATAAACTTGTGGCAGGAAGTAAGAAGAGCAATGTATGCCCCTCCCATCCAAGGGCAAATTAGATGTTCATCAAATATTACAGGGCTGCTGCTAGTAAGAGATAGTAAGAGCAACAATAGTAGTAATGATACAAAGACCTTCAGGCCTAGAAGAGGAGATATGAAGGACAATTAGAGAAGTGAATTATATAAATATAAAGTAGTCAAAATTGAACCATTAAGAATAGCACCCACCCATGCAAAGAGAAGAGTGGTGCAGAAAGAAAAAAGAGCAATAGGACTTAGAGCTTTCTTCCTTAAGTTCTTAGGAGCAGCAGGAAGCACTATAGGCGCAGCGTCAGTGACGCTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAGCAGCAAAACAATTTGCTGAGAGCTATTGAGGCGCAACAGCATCTGTTGCAACTCACAGTCTAAGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTTTAGAAAGATACCTAAAAGATCAACAGCTCCTGAAGATTTGAGGTTGCTCTAGAAAACTCATTTGCACCACTAATGTGCCCTAAAATGTTAGTTAGAGCCCTAGATAGAATAGATCTCTAGATAAGATTTAGACTAACATGACCTAGAAGCAGTAGGAAAAAGAAATTGACAATTATACAGACACAATATATAACTTAATTGAACAATCACAGAACCAACAAGAACAGAATGAACAAGACTTATTAGCATTAGATAAGTAGGCAAGTTTGTAGAATTAGTTTGACATTACACAGTGGCTATAGTATATAAAAATATTCATAATGATAGTAAGAGGCTTGATAAGTTTAAGAATAGTTTTTACTATACTGTCTATAGTGAATAGAGTTAGGCAGAGATACTCACCATTGTCATTGCAGACCCTCCTCCCAACCCAGAGGGGACCCGACAGGCCCGAAAGAACAGAAGAAGGAGGTAGAGAGAAAGACAGAGGCACATCCACGAGATTAGTGCATAGATTCTTAGCACTCATCTAGGACGACCTGCGGAGCCTGTTCCTCTTCAGTTACCACCGCTTGAGAGACTTACTCTTGATTGTGGCGAGGATTGTAGAACTTCTAAGACGCAGAAAGTAAGAAGCACTGAAGTATTGGTAGAATCTCCTGCAGTATTAGAGTCAGGAAATAAAGAATAGTGCAGTTAGCTTGCTCAACACCACAGCAATAGCAGTAGCTGAAAGGACAGATAAGATTATAGAAGTATTACAAAGAGGCTTTAGAGCTATTCTCCACATACCTACACGAATAAGACAGGGCTTAGAAAAAGCTTTGCTATAA" @@ -4391,7 +4391,7 @@ "subtype_start": 8376, "subtype_end": 8469, "orientation": "forward", - "distance": 0.4866666666666659, + "distance": 0.439759036144578, "protein": "RPSSQPRGDPTGPKEQKKEVERKTEAHPRD", "aminoacids": "RPSSQPRGDPTGPKEQKKEVERKTEAHPRD*", "nucleotides": "AGACCCTCCTCCCAACCCAGAGGGGACCCGACAGGCCCGAAAGAACAGAAGAAGGAGGTAGAGAGAAAGACAGAGGCACATCCACGAGATTAG" @@ -4403,7 +4403,7 @@ "subtype_start": 8377, "subtype_end": 8653, "orientation": "forward", - "distance": 1.2406593406593407, + "distance": 0.6667847862036381, "protein": "ILSTHLGRPAEPVPLQLPPLERLTLDCGEDCRTSKTQKVRSTEVLVESPAVLESGNKE", "aminoacids": "DPPPNPEGTRQARKNRRRR*RERQRHIHEISA*ILSTHLGRPAEPVPLQLPPLERLTLDCGEDCRTSKTQKVRSTEVLVESPAVLESGNKE*", "nucleotides": "GACCCTCCTCCCAACCCAGAGGGGACCCGACAGGCCCGAAAGAACAGAAGAAGGAGGTAGAGAGAAAGACAGAGGCACATCCACGAGATTAGTGCATAGATTCTTAGCACTCATCTAGGACGACCTGCGGAGCCTGTTCCTCTTCAGTTACCACCGCTTGAGAGACTTACTCTTGATTGTGGCGAGGATTGTAGAACTTCTAAGACGCAGAAAGTAAGAAGCACTGAAGTATTGGTAGAATCTCCTGCAGTATTAGAGTCAGGAAATAAAGAATAG" @@ -4415,7 +4415,7 @@ "subtype_start": 8796, "subtype_end": 9417, "orientation": "forward", - "distance": 0.9788617886178801, + "distance": 0.6122241431912931, "protein": "MRQARPVRKPEPAATKVRAASRDLERHGALTSSNTAATNADVACLEAQQEEKEVGFPVRPQVPLRPMTYKGALDISHFLKEKGGLDGLIYSKRRQDILDLWLYNTQGYFPDWQNYTPRPGVRFPLCFRWCFKLVPVDPDKVEEASVGENNCLLSPENLHRIEDEHREVLQWRFDSRLAFHHVARELHPEYYKDC", "aminoacids": "MRQARPVRKPEPAATKVRAASRDLERHGALTSSNTAATNADVACLEAQQEEKEVGFPVRPQVPLRPMTYKGALDISHFLKEKGGLDGLIYSKRRQDILDLWLYNTQGYFPDWQNYTPRPGVRFPLCFRWCFKLVPVDPDKVEEASVGENNCLLSPENLHRIEDEHREVLQWRFDSRLAFHHVARELHPEYYKDC*H*", "nucleotides": "ATGAGACAAGCTAGGCCAGTAAGAAAGCCAGAGCCAGCAGCAACTAAGGTAAGAGCAGCATCTCGAGACCTAGAAAGACATGGAGCACTTACAAGTAGCAATACAGCAGCTACCAATGCTGATGTTGCCTGCCTAGAAGCACAACAGGAAGAAAAAGAGGTAGGTTTTCCAGTCAGACCTCAGGTACCTTTAAGGCCAATGACTTACAAAGGAGCTCTAGATATTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGATGGGCTAATTTACTCCAAAAGAAGACAAGACATCCTTGATCTGTGGCTCTACAACACACAAGGCTACTTCCCTGACTGGCAGAACTACACACCAAGGCCAGGAGTCAGATTTCCACTGTGTTTTAGATGGTGCTTCAAGCTAGTACCAGTTGATCCAGATAAGGTAGAAGAGGCCAGTGTAGGAGAGAACAACTGCTTGTTAAGCCCCGAAAACCTGCATAGAATAGAAGACGAACACAGAGAAGTATTGCAGTGGAGGTTTGACAGCCGCCTAGCATTTCATCACGTGGCCCGAGAGCTGCATCCGGAGTATTACAAGGACTGCTGACACTAA" @@ -4429,7 +4429,7 @@ "subtype_start": 789, "subtype_end": 2292, "orientation": "forward", - "distance": 0.2571999999999999, + "distance": 0.2932056543547651, "protein": "MGARASILSGGKLDSWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSVNVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE", "aminoacids": "MGARASILSGGKLDSWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSVNVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE*R*", "nucleotides": "ATGGGTGCGAGAGCGTCAATATTAAGCGGGGGAAAATTAGATTCATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATTTAGTATGGGCAAGCAGGGAGCTAGAACGATTTGCCGTTAACCCTGGCCTGTTAGAAACATCAGAGGGATGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATTTAATGCAGTAGCAGTCCTCTATTGTGTACATCAAAGGATACAGGTACAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGTAGCAGCAGCTGACACTGACACAGGAAACAGCAGCCAAAATTACCCCATAGTGCAGAACCTCCAGGGGCAAATGGTACATCAGCCCCTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAAAAGGCCTTCAGCCCAGAAGTCATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGTCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCTTGGGATTAAATAAAATAGTAAGGATGTATAGCCCTACCAGTATTCTGGATATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAGAACTTTAAGAGCTGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATTCGAATCCAGATTGTAAGACTATTTTAAAAGCATTAGGACCAGCAGCAACACTAGAGGAAATGATGACAGCATGTCAAGGAGTGGGGGGACCAGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAAATTCAGTTAATGTAATGATGCAAAGAGGCAATTTTAGAAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACATCAAATGAAAGACTGTACAGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAG" @@ -4441,7 +4441,7 @@ "subtype_start": 2084, "subtype_end": 5096, "orientation": "forward", - "distance": 0.14755732801595212, + "distance": 0.1922427454342348, "protein": "FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVHQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED", "aminoacids": "FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVHQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*", "nucleotides": "TTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAGGGGGGCAATTTAAAGAAGCTTTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACCCATAGAAATCTGTGGACACAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGCTTGGTTGTACCTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTCAATAAGAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAATTCCCTTAGATAAAGAATTCAGGAAGTATACTGCATTTACCATACCTAGTACAAATAATGAGACACCAGGGATTAGGTATGAGTACAATGTGCTGCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGCAAAATCCAGATATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAACTGAGACAACATCTGTTAAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAGTGGACAGTACAGCCTATAATACTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTACGCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAGGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTTTAAGAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGCAATGGACAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTACAAAAGATAGCCACAGAAAGCATAGTAATATGGGGAAAAACTCCTAAATTTAGACTACCTATACAAAAAGAAACGTGGGAGACATGGTGGGCAGAGTACTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAATTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACTAAATTAGGCAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAGGTTATCTCCCTAACGGACACAACAAATCAAAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATCAGAAGTAAACATAGTAACAGACTCACAATATACATTAGGAATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCCATCAGATAATAGAGCAGTTAATAAAAAAGGAAAAAGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGACAAACTAGTCAGTGCTGGAGTCAGGAGAGTACTATTTCTAGATGGAATAGATAAGGCCCAAGAAGACCATGAGAAATATCACAGTAATTGGAGAGCAATGGCTGGTGATTTTAATATACCCCCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCAAAAAGGAGAGGCCATGCATGGACAAGTAGATTGTAGTCCAGGAATATGGCAACTAGATTGTACACATCTAGAAGGGAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTCTCCTGAAACTAGCAGGGAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTAATGTGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCCATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTATAGTGCAGGGGAAAGAATAGTAGATATAATAGCAACAGACCTACAAACTAAAGAATTACAGAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGGAGAAAAGCAAAAATCATTAGGGATTATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG" @@ -4453,7 +4453,7 @@ "subtype_start": 5040, "subtype_end": 5619, "orientation": "forward", - "distance": 0.36979166666666674, + "distance": 0.37360555672490003, "protein": "MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPDLADQLIHLYYFDCFSESAIRNAILGHIVNPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH", "aminoacids": "MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPDLADQLIHLYYFDCFSESAIRNAILGHIVNPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH*", "nucleotides": "ATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATGTTTCAAAGAAAACTAAAGGATGGTTTTATAGACATCACTATGAAAGCACACATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTGGTAGTAACAACATATTGGGGCCTGAATACAGGAGAAAGAGAATGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGAAAAAGGAAATATAGCACACAAGTTGACCCTGACCTAGCAGACCAACTAATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACATATAGTTAATCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGCTCTCTACAATACTTGGCACTAAAAGCATTAACAACACCAAAGAGAAGAAAGCCACCTTTACCTAGTGTTAGGAAACTGACAGAGGATAGATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAG" @@ -4465,7 +4465,7 @@ "subtype_start": 5558, "subtype_end": 5850, "orientation": "forward", - "distance": 0.4038461538461544, + "distance": 0.39444027047332864, "protein": "MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS", "aminoacids": "MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS*T", "nucleotides": "ATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAGAGCTTTTAGAGGAACTTAAGAATGAAGCGGTTAGACATTTTCCTAGGCCGTGGCTCCATGGCTTAGGACAACATATCTATGAAACTTATGGGGACACTTGGACAGGAGTGGAGGCCATAATAAGAACCCTGCAACAACTGCTGTTTATTCATTTCAGACTTGGGTGTCGACATAGCAGAATAGGCATTGTGCCACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACT" @@ -4477,7 +4477,7 @@ "subtype_start": 5830, "subtype_end": 6045, "orientation": "forward", - "distance": 0.29166666666666674, + "distance": 0.31992687385740404, "protein": "MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ", "aminoacids": "MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ", "nucleotides": "ATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCACCCAGGAAGTCAGCCTAAAACTCCTTGTACTAACTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAAAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAG" @@ -4489,7 +4489,7 @@ "subtype_start": 5969, "subtype_end": 6045, "orientation": "forward", - "distance": 0.5769230769230769, + "distance": 0.48200514138817474, "protein": "MAGRSGDSDEELLKAVRLIKILYQSS", "aminoacids": "MAGRSGDSDEELLKAVRLIKILYQSS", "nucleotides": "ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGT" @@ -4501,7 +4501,7 @@ "subtype_start": 6061, "subtype_end": 6310, "orientation": "forward", - "distance": 0.6500000000000001, + "distance": 0.5118110236220472, "protein": "MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAEDSGNESEGDQEELSALMEMGHHAPGDVDDL", "aminoacids": "MQPLHIAAIVGLVVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAEDSGNESEGDQEELSALMEMGHHAPGDVDDL*", "nucleotides": "ATGCAACCTCTGCACATAGCAGCAATAGTAGGATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGACCATAGTGTTAATAGAATATAGGAAAATATTAAGACAAAAAAGGATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAG" @@ -4513,7 +4513,7 @@ "subtype_start": 6224, "subtype_end": 8795, "orientation": "forward", - "distance": 0.4941588785046729, + "distance": 0.4435264018789581, "protein": "MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTESHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSKEGKMAEEMRNCSFNITTEIRNKMQKEYALFYKLDVVPIDDDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYGNKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSGTETFRPGGGDMKDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL", "aminoacids": "MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTTESHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSKEGKMAEEMRNCSFNITTEIRNKMQKEYALFYKLDVVPIDDDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYGNKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSGTETFRPGGGDMKDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL*", "nucleotides": "ATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTGACAGTCTATTATGGGGTACCTGTATGGAAAGAAGCAAACACCACTCTATTTTGTGCATCGGATGCTAAAGCATATACCACAGAGTCACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGGATTGGAAAATGTGACAGAAAATTTTAATATGTGGAAAAATAACATGGTAGAACAGATGCATGAGGATGTAATCAATTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCACTAATCTGAATGTTACTAATACCAATAGCAGTAGTAAGGAGGGAAAGATGGCGGAAGAAATGAGAAACTGCTCTTTCAATATCACCACAGAAATAAGAAATAAGATGCAGAAGGAATATGCACTTTTTTATAAACTTGATGTAGTACCAATAGATGATGATAATACAAGTTATACATTGATAAATTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCTATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAGGATAAGAAGTTCAATGGATCAGGACCATGTAAAAGTGTCAGCACAGTACAATGTACACATGGAATTAAGCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTTTAGCAGAAGAAGAGGTAGTAATTAGATCTGAAAATTTCACGAACAATGCTAAAACCATAATAGTACATCTGAAGGAACCTATACAAATTAATTGTACAAGACCCAACAACAATACAATGAAAAGTATCCCTCTAGGACCAGGAAGAGCATTCTATGCAACAGGAGCCATAATAGGAGATATAAGACAAGCACATTGTAACCTTAGTAGAAAAGCATGGAATAATACTTTAAAACAGGTAGTTGAAAAATTAAAAGAACAATATGGGAATAAAACAATAATCTTTAATCACTCCTCAGGAGGGGACCCAGAAATTATAATGCATACTTTTAATTGTGGAGGGGAATTTTTCTATTGTAATACAACACAGCTGTTTAATAGTACTTGGAATAGTACTTGGACTGGGAATGCTACCGAATTAGATGGAAACATCACACTCCCATGCAGAATAAAACAGATTATAAACAGGTGGCAAGAAGTAGGAAAAGCAATGTATGCCCCTCCCATTAGAGGAAAAATTAGATGTTCATCAAATATTACAGGGTTACTATTAGTAAGAGATGGTGGTAACACGAGCGGGACTGAGACCTTCAGACCTGGAGGAGGAGATATGAAGGACAATTGGAGGAGTGAATTATATAAATATAAAGTAGTAAAAATTGAGCCATTAGGAGTAGCACCCACCAGGGCAAAGAGAAGAGTGGTGCAAAGAGAAAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAAGCCAGGCTGTTATTGTCTGGTATAGTGCAACAGCAAAACAATTTGCTGAGAGCTATTGAGGCGCAACAACATCTATTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTACAGGATCAACAGCGCCTGGGAATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCCTGGAATGCTAGTTGGAGTAATAAATCTCTGAATCAGATTTGGGATAACATGACCTGGATGGAGTGGGAAAGAGAAATTAACAATTACACAGACACAATATACACCTTAATTGAAAAGGCGCAGAACCAGCAGGAAAAGAATGAACAAGAATTATTGGAATTGGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAAATGGCTGTGGTACATAAAATTATTCATAATGATAGTAGGAGGATTGATAGGTTTAAGAATAGTTTTTGCTGTACTTGCTATAGTAAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGTCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAGCTTATTCAATGTCACAGCCATCGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAAGAGCTTGTAGAGCTCTTCTCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCATTGTTATAA" @@ -4525,7 +4525,7 @@ "subtype_start": 8376, "subtype_end": 8469, "orientation": "forward", - "distance": 0.28666666666666596, + "distance": 0.3161764705882347, "protein": "RPTSQPRGDPTGPKESKKKVEKETETDQFD", "aminoacids": "RPTSQPRGDPTGPKESKKKVEKETETDQFD**", "nucleotides": "AGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGA" @@ -4537,7 +4537,7 @@ "subtype_start": 8377, "subtype_end": 8653, "orientation": "forward", - "distance": 0.4285714285714286, + "distance": 0.40871934604904625, "protein": "DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVSLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE", "aminoacids": "DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVSLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE*CY*", "nucleotides": "GACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGTCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAG" @@ -4549,7 +4549,7 @@ "subtype_start": 8796, "subtype_end": 9417, "orientation": "forward", - "distance": 0.5918699186991796, + "distance": 0.48839393532805264, "protein": "MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTYKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPTSLHGVEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC", "aminoacids": "MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTYKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPTSLHGVEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC*H*", "nucleotides": "ATGGGGGGCAAGTGGTCAAAAAGTAGTGGGGGTGGATGGCCTGCTGTAAGGGAAAGAATGAGACGAACTGAGCCAGCAGCAGAAGGGGTGGGAGCAGTATCTCGAGACCTGGAAAGACATGGAGCAGTCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGCGCCTGGCTGGAAGCACAAGAAGAGGACAGTGAAGTGGGTTTTCCAGTCAGACCTCAGGTGCCTTTAAGACCAATGACTTACAAAGGAGCTCTCGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCCCAAAAAAGACAAGATATCCTTGACCTGTGGGTCTACAACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGACCAGATATCCACTGACCTTTGGGTGGTGTTTCAAGCTAGTACCAGTGGAGCCAGAAGAGGCCAATCAAGGAGAGAACAACTGCTTGTTACACCCTACGAGCCTGCATGGGGTGGAGGACCCGGAAAAAGAAGTATTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCACATGGCCCGAGAGAAGCATCCGGAGTACTACAAAGACTGCTGACATTGA" @@ -4563,7 +4563,7 @@ "subtype_start": 789, "subtype_end": 2292, "orientation": "forward", - "distance": 0.2571999999999999, + "distance": 0.2932056543547651, "protein": "MGARASILSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWTTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSANVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE", "aminoacids": "MGARASILSGGKLDAWEKIRLRPGGKKKYRLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELKSLFNAVAVLYCVHQRIQVQDTKEALEKVEEEQNKSKKKAQQVAAADTDTGNSSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWTTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYRTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVNSANVMMQRGNFRNQRKIVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETITPSQKQEPRDKELYPLSSLKSLFGSDPSSE*R*", "nucleotides": "ATGGGTGCGAGAGCGTCAATATTAAGCGGGGGAAAATTAGATGCATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATTTAGTATGGGCAAGCAGGGAGCTAGAACGATTTGCCGTTAACCCTGGCCTGTTAGAAACATCAGAGGGATGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATTTAATGCAGTAGCAGTCCTCTATTGTGTACATCAAAGGATACAGGTACAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGTAGCAGCAGCTGACACTGACACAGGAAACAGCAGCCAAAATTACCCCATAGTGCAGAACCTCCAGGGGCAAATGGTACATCAGCCCCTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAAAAGGCCTTCAGCCCAGAAGTCATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGACGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCTTGGGATTAAATAAAATAGTAAGGATGTATAGCCCTACCAGTATTCTGGATATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAGAACTTTAAGAGCTGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATTCGAATCCAGATTGTAAGACTATTTTAAAAGCATTAGGACCAGCAGCAACACTAGAGGAAATGATGACAGCATGTCAAGGAGTGGGGGGACCAGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAAATTCAGCTAATGTAATGATGCAGAGAGGCAATTTTAGAAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACATCAAATGAAAGACTGTACAGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAG" @@ -4575,7 +4575,7 @@ "subtype_start": 2084, "subtype_end": 5096, "orientation": "forward", - "distance": 0.14755732801595212, + "distance": 0.1922427454342348, "protein": "FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSTGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED", "aminoacids": "FFRENLAFPQRKARELPSEQTRANSPTRRELQVWGRDNNSLSEAGAKRQGTVSLVFPQITLWQRPLVRIKIGGQFKEALLDTGADDTVLEEMSLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKEFRKYTAFTIPSTNNETPGIRYEYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIILPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTEEAELELAENREILREPVHGVYYDPSKDLIAEVQKQGNGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWAEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGSEVNIVTDSQYTLGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSTGVRRVLFLDGIDKAQEDHEKYHSNWRAMAGDFNIPPVVAKEIVASCDKCQQKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDLQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*", "nucleotides": "TTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAACTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAATAACTCCCTCTCAGAAGCAGGAGCCAAGAGACAAGGAACTGTATCCCTTGTCTTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCAGAATAAAGATAGGGGGGCAATTTAAAGAAGCTTTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACCCATAGAAATCTGTGGACACAAAGCTATAGGTACAGTATTAATAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGCTTGGTTGTACCTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTCAATAAGAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAATTCCCTTAGATAAAGAATTCAGGAAGTATACTGCATTTACCATACCTAGTACAAATAATGAGACACCAGGGATTAGGTATGAGTACAATGTGCTGCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAGCAAAATCCAGATATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAACTGAGACAACATCTGTTAAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAGTGGACAGTACAGCCTATAATACTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTACGCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAGGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTTTAAGAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAGCAGGGCAATGGACAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTACAAAAGATAGCCACAGAAAGCATAGTAATATGGGGAAAAACTCCTAAATTTAGACTACCTATACAAAAAGAAACATGGGAGACATGGTGGGCAGAGTACTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAATTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACTAAATTAGGCAAAGCAGGATATGTCACTGACAGAGGAAGACAAAAGGTTATCTCCCTAACGGACACAACAAATCAAAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATCAGAAGTAAACATAGTAACAGACTCACAATATACATTAGGAATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAATCAGATAATAGAGCAGTTAATAAAAAAGGAAAAAGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGACAAACTAGTCAGTACTGGAGTCAGGAGAGTACTATTTCTAGATGGAATAGATAAGGCCCAAGAAGACCATGAGAAATATCACAGTAATTGGAGAGCAATGGCTGGTGATTTTAATATACCCCCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCAAAAAGGAGAGGCCATGCATGGACAAGTAGATTGTAGTCCAGGAATATGGCAACTAGATTGTACACATCTAGAAGGGAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTCTCCTGAAACTAGCAGGGAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTAATGTGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCCATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTATAGTGCAGGGGAAAGAATAGTAGATATAATAGCAACAGACCTACAAACTAAAGAATTACAGAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGATATAAAAGTAGTGCCAAGGAGAAAAGCAAAAATCATTAGGGATTATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG" @@ -4587,7 +4587,7 @@ "subtype_start": 5040, "subtype_end": 5619, "orientation": "forward", - "distance": 0.35416666666666674, + "distance": 0.36355859709153127, "protein": "MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH", "aminoacids": "MANRWQVMIVWQVDRMRIRTWNSLVKHHMHVSKKTKGWFYRHHYESTHPRISSEVHIPLGDARLVVTTYWGLNTGEREWHLGQGVSIEWRKRKYSTQVDPNLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALKALTTPKRRKPPLPSVRKLTEDRWNEHQKTKGHRGSHTMNGH*", "nucleotides": "ATGGCAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGCATGTTTCAAAGAAAACTAAAGGATGGTTTTATAGACATCACTATGAAAGCACTCATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTGGTAGTAACAACATATTGGGGCCTGAATACAGGAGAAAGAGAATGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGAAAAAGGAAATATAGCACACAAGTTGACCCTAACCTAGCAGACCAACTAATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACATATAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGCTCTCTACAATACTTGGCACTAAAAGCATTAACAACACCAAAGAGAAGAAAGCCACCTTTACCTAGTGTTAGGAAACTGACAGAGGATAGATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAG" @@ -4599,7 +4599,7 @@ "subtype_start": 5558, "subtype_end": 5850, "orientation": "forward", - "distance": 0.4038461538461544, + "distance": 0.39444027047332864, "protein": "MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS", "aminoacids": "MERAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHGLGQHIYETYGDTWTGVEAIIRTLQQLLFIHFRLGCRHSRIGIVPQRRARNGASRS*T", "nucleotides": "ATGGAACGAGCACCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAGAGCTTTTAGAGGAACTTAAGAATGAAGCGGTTAGACATTTTCCTAGGCCGTGGCTCCATGGCTTAGGACAACATATCTATGAAACTTATGGGGACACTTGGACAGGAGTGGAGGCCATAATAAGAACCCTGCAACAACTGCTGTTTATTCATTTCAGACTTGGGTGTCGACATAGCAGAATAGGCATTGTGCCACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACT" @@ -4611,7 +4611,7 @@ "subtype_start": 5830, "subtype_end": 6045, "orientation": "forward", - "distance": 0.29166666666666674, + "distance": 0.31992687385740404, "protein": "MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ", "aminoacids": "MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRAPQGSQTDQDSLSKQ", "nucleotides": "ATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCACCCAGGAAGTCAGCCTAAAACTCCTTGTACTAACTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAAAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAG" @@ -4623,7 +4623,7 @@ "subtype_start": 5969, "subtype_end": 6045, "orientation": "forward", - "distance": 0.5769230769230769, + "distance": 0.48200514138817474, "protein": "MAGRSGDSDEELLKAVRLIKILYQSS", "aminoacids": "MAGRSGDSDEELLKAVRLIKILYQSS", "nucleotides": "ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCAAGGCAGTCAGACTGATCAAGATTCTCTATCAAAGCAGT" @@ -4635,7 +4635,7 @@ "subtype_start": 6061, "subtype_end": 6310, "orientation": "forward", - "distance": 0.6865853658536587, + "distance": 0.5254806794847863, "protein": "MQPLHIAAIVGLIVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAEDSGNESEGDQEELSALMEMGHHAPGDVDDL", "aminoacids": "MQPLHIAAIVGLIVAAIIAIVVWTIVLIEYRKILRQKRIDRLIDRIRERAEDSGNESEGDQEELSALMEMGHHAPGDVDDL*", "nucleotides": "ATGCAACCTCTGCACATAGCAGCAATAGTAGGATTAATAGTAGCAGCAATAATAGCAATAGTTGTGTGGACCATAGTGTTAATAGAATATAGGAAAATATTAAGACAAAAAAGGATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAG" @@ -4647,7 +4647,7 @@ "subtype_start": 6224, "subtype_end": 8795, "orientation": "forward", - "distance": 0.49018691588785046, + "distance": 0.4415354827847462, "protein": "MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTPEAHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRNKMQKEYALFYKLDVVPIDNDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYENKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSETETFRPGGGDMKDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL", "aminoacids": "MRVKGIRKNCQRLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEANTTLFCASDAKAYTPEAHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDVINLWDQSLKPCVKLTPLCVTLNCTNLNVTNTNSSSEEGKMAEEMRNCSFNITTKIRNKMQKEYALFYKLDVVPIDNDNTSYTLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGSGPCKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVHLKEPIQINCTRPNNNTMKSIPLGPGRAFYATGAIIGDIRQAHCNLSRKAWNNTLKQVVEKLKEQYENKTIIFNHSSGGDPEIIMHTFNCGGEFFYCNTTQLFNSTWNSTWTGNATELDGNITLPCRIKQIINRWQEVGKAMYAPPIRGKIRCSSNITGLLLVRDGGNTSETETFRPGGGDMKDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLQDQQRLGIWGCSGKLICTTAVPWNASWSNKSLNQIWDNMTWMEWEREINNYTDTIYTLIEKAQNQQEKNEQELLELDKWASLWNWFNITKWLWYIKLFIMIVGGLIGLRIVFAVLAIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSVRLVNGFLALFWDDLRSLCLFLCHRLRDLLLIVTRIVELLGRRGWEILKHWWSLLQYWIQELKSSAISLFNVTAIAVAEGTDRVIEVVQRACRALLHIPTRIRQGLERALL*", "nucleotides": "ATGAGAGTGAAGGGGATCAGGAAGAATTGTCAGCGCTTATGGAGATGGGGCACCATGCTCCTGGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTGACAGTCTATTATGGGGTACCTGTATGGAAAGAAGCAAACACCACTCTATTTTGTGCATCGGATGCTAAAGCATATACCCCAGAGGCACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGGATTGGAAAATGTGACAGAAAATTTTAACATGTGGAAAAATAACATGGTAGAACAGATGCATGAGGATGTAATCAATTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCACTAATCTGAATGTTACTAATACCAATAGCAGTAGTGAGGAGGGAAAGATGGCGGAAGAAATGAGAAACTGCTCTTTCAATATCACCACAAAAATAAGAAATAAGATGCAGAAGGAATATGCACTTTTTTATAAACTTGATGTAGTACCAATAGATAATGATAATACAAGTTATACATTGATAAATTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCTATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAAGGATAAGAAGTTCAATGGATCAGGACCATGTAAAAATGTCAGCACAGTACAATGTACACATGGAATTAAGCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTTTAGCAGAAGAAGAGGTAGTAATTAGATCTGAAAATTTCACGAACAATGCTAAAACCATAATAGTACATCTGAAGGAACCTATACAAATTAATTGTACAAGACCCAACAACAATACAATGAAAAGTATCCCTCTAGGACCAGGAAGAGCATTCTATGCAACAGGAGCCATAATAGGAGATATAAGACAAGCACATTGTAACCTTAGTAGAAAAGCATGGAATAATACTTTAAAACAGGTAGTTGAAAAATTAAAAGAACAATATGAGAATAAAACAATAATCTTTAATCACTCCTCAGGAGGGGACCCAGAAATTATAATGCATACTTTTAATTGTGGAGGGGAATTTTTCTATTGTAATACAACACAGCTGTTTAATAGTACTTGGAATAGTACTTGGACTGGGAATGCTACCGAATTAGATGGAAACATCACACTCCCATGCAGAATAAAACAGATTATAAACAGGTGGCAAGAAGTAGGAAAAGCAATGTATGCCCCTCCCATTAGAGGAAAAATTAGATGTTCATCAAATATTACAGGGTTACTATTAGTAAGAGATGGTGGTAACACGAGCGAGACTGAGACCTTCAGACCTGGAGGAGGAGATATGAAGGACAATTGGAGGAGTGAATTATATAAATATAAAGTAGTAAAAATTGAGCCATTAGGAGTAGCACCCACCAGGGCAAAGAGAAGAGTGGTGCAAAGAGAAAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAAGCCAGGCTGTTATTGTCTGGTATAGTGCAACAGCAAAACAATTTGCTGAGAGCTATTGAGGCGCAACAACATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTACAGGATCAACAGCGCCTGGGAATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCCTGGAATGCTAGTTGGAGTAATAAATCTCTGAATCAGATTTGGGATAACATGACCTGGATGGAGTGGGAAAGAGAAATTAACAATTACACAGACACAATATACACCTTAATTGAAAAGGCGCAGAACCAGCAGGAAAAGAATGAACAAGAATTATTGGAATTGGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAAATGGCTGTGGTACATAAAATTATTCATAATGATAGTAGGAGGATTGATAGGTTTAAGAATAGTTTTTGCTGTACTTGCTATAGTAAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGCCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAGCTTATTCAATGTCACAGCCATCGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAAGAGCTTGTAGAGCTCTTCTCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCATTGTTATAA" @@ -4659,7 +4659,7 @@ "subtype_start": 8376, "subtype_end": 8469, "orientation": "forward", - "distance": 0.28666666666666596, + "distance": 0.3161764705882347, "protein": "RPTSQPRGDPTGPKESKKKVEKETETDQFD", "aminoacids": "RPTSQPRGDPTGPKESKKKVEKETETDQFD**", "nucleotides": "AGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGA" @@ -4671,7 +4671,7 @@ "subtype_start": 8377, "subtype_end": 8653, "orientation": "forward", - "distance": 0.39560439560439553, + "distance": 0.38952607660679506, "protein": "DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVPLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE", "aminoacids": "DPPPSPEGTRQARRNRRRRWRKRQRQISSISERILGTFLGRPAEPVPLPLPPLERLTLDCNKDCGTSGTQGVGNPQTLVESPAVLDSGAKE*CY*", "nucleotides": "GACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAAAGAGACAGAGACAGATCAGTTCGATTAGTGAACGGATTCTTGGCACTTTTCTGGGACGACCTGCGGAGCCTGTGCCTCTTCCTCTGCCACCGCTTGAGAGACTTACTCTTGATTGTAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAATCCTCAAACATTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAGCTAAAGAGTAGTGCTATTAG" @@ -4683,7 +4683,7 @@ "subtype_start": 8796, "subtype_end": 9417, "orientation": "forward", - "distance": 0.6162601626016186, + "distance": 0.49848743916874616, "protein": "MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPTSLHGMEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC", "aminoacids": "MGGKWSKSSGGGWPAVRERMRRTEPAAEGVGAVSRDLERHGAVTSSNTAATNADCAWLEAQEEDSEVGFPVRPQVPLRPMTFKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVYNTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPEEANQGENNCLLHPTSLHGMEDPEKEVLMWKFDSRLAFHHMAREKHPEYYKDC*H*", "nucleotides": "ATGGGGGGCAAGTGGTCAAAAAGTAGTGGGGGTGGATGGCCTGCTGTAAGGGAAAGAATGAGACGAACTGAGCCAGCAGCAGAAGGGGTGGGAGCAGTATCTCGAGACCTGGAAAGACATGGAGCAGTCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGCGCCTGGCTGGAAGCACAAGAAGAGGACAGTGAAGTGGGTTTTCCAGTCAGACCTCAGGTGCCTTTAAGACCAATGACTTTCAAAGGAGCTCTCGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCCCAAAAAAGACAAGATATCCTTGACCTGTGGGTCTACAACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGACCAGATATCCACTGACCTTTGGGTGGTGTTTCAAGCTAGTACCAGTGGAGCCAGAAGAGGCCAATCAAGGAGAGAACAACTGCTTGTTACACCCTACGAGCCTGCATGGGATGGAGGACCCGGAAAAAGAAGTATTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCACATGGCCCGAGAGAAGCATCCGGAGTACTACAAAGACTGCTGACATTGA" @@ -4697,7 +4697,7 @@ "subtype_start": 789, "subtype_end": 2292, "orientation": "forward", - "distance": 0.16679999999999984, + "distance": 0.21199796644636482, "protein": "MGARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPSLLETAEGCRQILGQLQPSLQTGSEELKSLYNTLATLYCVHQRIEVKDTKEALEKIEEEQNKSKKKAQQAAADTGNSSQVRHTGNSSQVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTSNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSHVTNSSAIMMQRGNFRNQRKAVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPPEEIFRFVEETTTPSQKQEPIDKELYPPLASLKSLFGNDPSSQ", "aminoacids": "MGARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPSLLETAEGCRQILGQLQPSLQTGSEELKSLYNTLATLYCVHQRIEVKDTKEALEKIEEEQNKSKKKAQQAAADTGNSSQVRHTGNSSQVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTSNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSHVTNSSAIMMQRGNFRNQRKAVKCFNCGKEGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPPEEIFRFVEETTTPSQKQEPIDKELYPPLASLKSLFGNDPSSQ*", "nucleotides": "ATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAGAATTGGATAGATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAAATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTTAACCCTAGCCTGTTAGAAACAGCAGAAGGCTGTAGACAAATATTGGGACAGTTACAACCGTCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATATAATACATTAGCAACCCTCTATTGTGTGCATCAAAGGATAGAGGTAAAAGACACCAAGGAAGCCTTAGAGAAGATAGAGGAAGAGCAAAACAAAAGCAAGAAAAAGGCACAGCAAGCAGCAGCTGACACAGGAAACAGCAGCCAGGTTAGACACACAGGAAACAGCAGCCAGGTCAGCCAAAATTACCCTATAGTACAGAACCTTCAGGGGCAAATGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAATACCATGCTAAATACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATCAATGAGGAAGCTGCAGAATGGGATAGACTACATCCAGTGCATGCAGGGCCCATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGATGACAAGTAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGGATGTATAGTCCTACCAGCATTCTGGACATAAGACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAAAACTCTAAGAGCCGAGCAAGCTACACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAACCCAGATTGTAAGACTATCTTAAAAGCATTGGGACCAGCAGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTAGGGGGACCCGGACATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCACGTAACAAATTCAAGTGCCATAATGATGCAGAGGGGCAATTTTAGAAACCAAAGAAAGGCTGTTAAGTGTTTCAATTGTGGCAAAGAGGGGCATATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGATTGTACTGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAATTTTCTCCAGAGCAGACCAGAGCCAACAGCCCCACCACCAGAAGAGATCTTCAGGTTTGTGGAAGAGACAACAACTCCCTCTCAGAAACAGGAGCCAATAGACAAGGAACTGTATCCTCCTTTAGCTTCCCTCAAATCACTCTTTGGCAACGACCCCTCGTCACAATAA" @@ -4709,7 +4709,7 @@ "subtype_start": 2084, "subtype_end": 5096, "orientation": "forward", - "distance": 0.14356929212362912, + "distance": 0.1880239208210378, "protein": "FFRENLAFPQRKAREFSPEQTRANSPTTRRDLQVCGRDNNSLSETGANRQGTVSSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMNLPGRWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPYRTRNPEMVIYQYMDDLYVGSDLEIGQHRAKIEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPNKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTEVVPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGEGQWTFQIYQEPFKNLKTGKYARARGAHTNDVKQLTEAVQKIATEGIVIWGKIPKFRLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKKGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIEKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQIIKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED", "aminoacids": "FFRENLAFPQRKAREFSPEQTRANSPTTRRDLQVCGRDNNSLSETGANRQGTVSSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMNLPGRWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPYRTRNPEMVIYQYMDDLYVGSDLEIGQHRAKIEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPNKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTEVVPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGEGQWTFQIYQEPFKNLKTGKYARARGAHTNDVKQLTEAVQKIATEGIVIWGKIPKFRLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKKGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIEKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAIHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQIIKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*", "nucleotides": "TTTTTTAGGGAAAATCTGGCCTTCCCACAAAGGAAGGCCAGGGAATTTTCTCCAGAGCAGACCAGAGCCAACAGCCCCACCACCAGAAGAGATCTTCAGGTTTGTGGAAGAGACAACAACTCCCTCTCAGAAACAGGAGCCAATAGACAAGGAACTGTATCCTCCTTTAGCTTCCCTCAAATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAGGGGGGCAGCTAAAGGAAGCTCTATTAGATACAGGGGCAGATGATACAGTATTAGAAGACATGAATTTACCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACCCATAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGATTGGTTGCACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAGGACTTCTGGGAAGTTCAATTAGGAATACCACATCCCGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTATTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATAAAGACTTCAGGAAGTATACTGCATTTACCATACCTAGCATAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGTATGACAAAAATCTTAGAGCCTTATAGAACACGAAATCCAGAAATGGTTATCTATCAATACATGGATGATTTATATGTAGGATCTGACTTAGAAATAGGGCAACATAGAGCAAAAATAGAGGAACTGAGACAACATCTGTTGAAGTGGGGATTTACTACCCCAGACAAAAAACATCAAAAAGAACCTCCATTCCTTTGGATGGGGTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAAACAAAGACAGCTGGACTGTCAATGACATACAGAAACTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTACCCAGGGATTAAGGTAAAGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAAGTAGTACCGCTAACAGAAGAAGCAGAGTTAGAACTGGCAGAAAACAGGGAGATTCTAAAAGAACCAGTACATGGGGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAGCAGGGGGAAGGACAATGGACATTTCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAGCGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAGCCACAGAAGGCATAGTAATATGGGGAAAAATTCCTAAATTTAGACTACCCATACAAAAGGAAACATGGGAAACATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAACACCCCTCCCTTAGTAAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAACAGGGAAACTAAAAAAGGAAAAGCAGGATATGTTACTGACAGAGGAAGACAAAAAGTTGTCTCCCTAACTGATACAACAAATCAGAAGACTGAGTTACAAGCAATTCATCTAGCTTTGCAGGATTCAGGATTAGAAGTAAACATAGTAACAGACTCACAATACGCATTGGGAATCATTCAAGCACAACCAGATAAAAGTGAATCAGAGTTAGTCAGTCAAATAATAGAACAGTTGATAAAAAAGGAAAAGGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTTAGTGCTGGAATCAGGAAAGTATTATTTTTAGATGGAATAGAGAAGGCCCAAGATGAACATGAGAAATATCACAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAGTGTCAGCTAAAAGGAGAAGCCATACATGGACAGGTAGACTGTAGTCCAGGAATATGGCAATTAGATTGTACACATTTAGAAGGAAAAATTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTCATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTCTCTTAAAATTAGCAGGAAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTAATACGGTTAAGGCCGCCTGTTGGTGGGCGGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACAGACATCCAAACCAAAGAACTACAAAAACAAATTATAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTTATACAAGATAATAGTGACATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG" @@ -4721,7 +4721,7 @@ "subtype_start": 5040, "subtype_end": 5619, "orientation": "forward", - "distance": 0.203125, + "distance": 0.24677296886864086, "protein": "MENRWQVMIVWQVDRMRIRTWNSLVKHHMYVSRKAKGWFYRHHFESNHPKISSEVHIPLEDARLVITTYWGLHTGERDWHLGQGVSIEWRKKRYSTQVDPDLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALAALITPKKRKPPLPSVKKLTEDRWNKPQKTKGHRGSHTMNGH", "aminoacids": "MENRWQVMIVWQVDRMRIRTWNSLVKHHMYVSRKAKGWFYRHHFESNHPKISSEVHIPLEDARLVITTYWGLHTGERDWHLGQGVSIEWRKKRYSTQVDPDLADQLIHLYYFDCFSESAIRNAILGHIVSPRCEYQAGHNKVGSLQYLALAALITPKKRKPPLPSVKKLTEDRWNKPQKTKGHRGSHTMNGH*", "nucleotides": "ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATGTATGTTTCAAGGAAAGCTAAGGGATGGTTTTATAGACATCACTTTGAAAGCAATCATCCAAAAATAAGTTCAGAAGTACACATCCCACTGGAGGATGCTAGACTGGTAATAACAACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCATTTGGGTCAGGGGGTCTCCATAGAATGGAGGAAAAAGAGATATAGCACACAAGTAGACCCTGACCTAGCAGACCAACTAATTCATCTGTACTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACACATAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGATCTCTACAGTACTTGGCACTAGCAGCATTAATAACACCAAAAAAGAGAAAGCCACCCTTGCCTAGTGTTAAGAAGCTAACAGAAGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAG" @@ -4733,7 +4733,7 @@ "subtype_start": 5558, "subtype_end": 5850, "orientation": "forward", - "distance": 0.3653846153846132, + "distance": 0.37080405932864813, "protein": "MEQAPEDQGPQREPYNEWTLELLEELKSEAVRHFPRIWLHSLGQYIYETYGDTWAGVEAIIRILQQLLFIHFRIGCQHSRIGIIRQRRARNGASRS", "aminoacids": "MEQAPEDQGPQREPYNEWTLELLEELKSEAVRHFPRIWLHSLGQYIYETYGDTWAGVEAIIRILQQLLFIHFRIGCQHSRIGIIRQRRARNGASRS*A", "nucleotides": "ATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACATTAGAGCTTTTAGAGGAGCTTAAGAGTGAAGCTGTTAGACATTTTCCTAGGATATGGCTCCATAGCTTAGGGCAATATATCTATGAAACTTATGGAGATACTTGGGCAGGGGTGGAAGCCATAATAAGAATTCTGCAACAACTGTTGTTTATTCATTTCAGAATTGGGTGTCAACATAGCAGAATAGGCATTATTCGACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGGCT" @@ -4745,7 +4745,7 @@ "subtype_start": 5830, "subtype_end": 6045, "orientation": "forward", - "distance": 0.45833333333333326, + "distance": 0.42503863987635226, "protein": "MEPVDPRLEPWKHPGSQPRTACTTCYCKKCCFHCQVCFTTKGLGISYGRKKRRQRRRAPQDSQTDQGPLPKQ", "aminoacids": "MEPVDPRLEPWKHPGSQPRTACTTCYCKKCCFHCQVCFTTKGLGISYGRKKRRQRRRAPQDSQTDQGPLPKQ", "nucleotides": "ATGGAGCCAGTAGATCCTAGGCTAGAGCCCTGGAAGCATCCAGGAAGTCAGCCTAGGACTGCTTGTACCACTTGTTATTGTAAAAAATGCTGCTTTCATTGCCAAGTTTGTTTCACAACAAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGACGAGCTCCTCAAGACAGTCAGACTGATCAAGGTCCTCTACCAAAGCAG" @@ -4757,7 +4757,7 @@ "subtype_start": 5969, "subtype_end": 6045, "orientation": "forward", - "distance": 0.5769230769230769, + "distance": 0.48200514138817474, "protein": "MAGRSGDSDDELLKTVRLIKVLYQSS", "aminoacids": "MAGRSGDSDDELLKTVRLIKVLYQSS", "nucleotides": "ATGGCAGGAAGAAGCGGAGACAGCGACGACGAGCTCCTCAAGACAGTCAGACTGATCAAGGTCCTCTACCAAAGCAGT" @@ -4769,7 +4769,7 @@ "subtype_start": 6061, "subtype_end": 6310, "orientation": "forward", - "distance": 0.6097560975609757, + "distance": 0.49583498611662047, "protein": "MQPLTILAIVALVVAAILAIVVWSIVLIEYRKILRQRKIDRLIDRIRERAEDSGNESEGDQEELSALVERGHLAPWNVDDL", "aminoacids": "MQPLTILAIVALVVAAILAIVVWSIVLIEYRKILRQRKIDRLIDRIRERAEDSGNESEGDQEELSALVERGHLAPWNVDDL*", "nucleotides": "ATGCAACCTTTAACAATATTAGCAATAGTAGCACTAGTAGTAGCAGCAATACTAGCAATAGTTGTGTGGTCCATAGTACTCATAGAATATAGGAAAATATTAAGACAAAGGAAAATAGACAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAAAGTGAGGGGGATCAGGAAGAATTATCAGCACTGGTGGAGAGGGGGCATCTTGCTCCTTGGAATGTTGATGATCTGTAA" @@ -4781,7 +4781,7 @@ "subtype_start": 6224, "subtype_end": 8795, "orientation": "forward", - "distance": 0.5255841121495328, + "distance": 0.45879137688401217, "protein": "MKVRGIRKNYQHWWRGGILLLGMLMICNATEQQLWVTVYYGVPVWKEANTTLFCASDAKAYSTEVHNVWATHACVPTDPNPQEVVLKNVTENFNMWENNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTNTTRSSGNTTNEMKNCSFYTETDIRDKKRKEYALFYELDIVPIDEDNKNKSNNISYSRLISCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEDEVVIKSSNFTNNAKTIIVQLNETVKINCTRPNNNTRKSIPIGPGRAFYATGDIIGDIRQAHCNISRANWTNTLKQIAEKLGKQFEENKTIVFNPSSGGDPEVVMHSFNCRGEFFYCNSTPLFNSTWKETNGIWTRIGESNDSATITLNDSDTITLQCKIRQIINLWQEVGKAMYAPPIKGQISCLSNITGLLLVRDGGNNTNGTEIFRPVGGEMRDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRATLGALFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICTTTVPWNTSWSNKSLEKIWNNMTWMEWEREIDNYTSLIYTLLEESQNQQEKNEKELLELDTWASLWNWFDITNWLWYIKIFIMIIGGLVGLRIVFTVLSIVNRVRQGYSPLSFQIHPPAPRGPDRPEGIEGEGGERDRDRSGPLVNGFLALFWVDLRSLCLFSYHRLRDLLLIVARIVELLGRRGWEALKYGWSLLQYWSQELKNSAVSLLNATAIAVAEGTDRVIEILQRACRAILHIPTRIRQGLERALL", "aminoacids": "MKVRGIRKNYQHWWRGGILLLGMLMICNATEQQLWVTVYYGVPVWKEANTTLFCASDAKAYSTEVHNVWATHACVPTDPNPQEVVLKNVTENFNMWENNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTNTTRSSGNTTNEMKNCSFYTETDIRDKKRKEYALFYELDIVPIDEDNKNKSNNISYSRLISCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEDEVVIKSSNFTNNAKTIIVQLNETVKINCTRPNNNTRKSIPIGPGRAFYATGDIIGDIRQAHCNISRANWTNTLKQIAEKLGKQFEENKTIVFNPSSGGDPEVVMHSFNCRGEFFYCNSTPLFNSTWKETNGIWTRIGESNDSATITLNDSDTITLQCKIRQIINLWQEVGKAMYAPPIKGQISCLSNITGLLLVRDGGNNTNGTEIFRPVGGEMRDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRATLGALFLGFLGAAGSTMGAASVTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICTTTVPWNTSWSNKSLEKIWNNMTWMEWEREIDNYTSLIYTLLEESQNQQEKNEKELLELDTWASLWNWFDITNWLWYIKIFIMIIGGLVGLRIVFTVLSIVNRVRQGYSPLSFQIHPPAPRGPDRPEGIEGEGGERDRDRSGPLVNGFLALFWVDLRSLCLFSYHRLRDLLLIVARIVELLGRRGWEALKYGWSLLQYWSQELKNSAVSLLNATAIAVAEGTDRVIEILQRACRAILHIPTRIRQGLERALL*DGWQMVKK*", "nucleotides": "ATGAAAGTGAGGGGGATCAGGAAGAATTATCAGCACTGGTGGAGAGGGGGCATCTTGCTCCTTGGAATGTTGATGATCTGTAATGCTACAGAACAACAATTGTGGGTTACAGTCTATTATGGGGTACCTGTGTGGAAAGAAGCAAACACCACTCTATTTTGTGCATCAGATGCTAAAGCATATAGTACAGAGGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTGGTATTAAAAAATGTGACAGAAAATTTTAATATGTGGGAAAATAACATGGTAGAACAGATGCATGAAGATATAATCAGTTTATGGGATCAAAGCTTAAAGCCATGTGTAAAGTTAACTCCACTCTGTGTTACTCTAAATTGCACTAATACCACTAGGAGTAGTGGAAATACTACCAATGAAATGAAAAACTGCTCTTTCTATACCGAAACAGACATAAGAGATAAGAAGAGAAAGGAATATGCACTTTTTTATGAACTTGATATAGTACCCATAGATGAGGATAATAAGAATAAGAGTAATAATATTAGCTATTCTAGGTTAATAAGTTGCAACACCTCAGTTATTACACAAGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAATGATAAGAAATTCAATGGAACAGGGCCATGTACAAATGTCAGCACAGTGCAATGTACACATGGTATTAGGCCAGTAGTATCAACTCAACTGCTGTTAAATGGCAGTCTAGCAGAAGACGAGGTAGTAATTAAATCTAGCAATTTCACGAACAATGCTAAAACCATAATAGTACAGCTAAATGAAACTGTAAAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATACCTATAGGACCAGGGAGAGCATTTTATGCAACAGGAGACATAATAGGAGACATAAGACAAGCACATTGTAACATCTCTAGAGCAAACTGGACAAACACTTTAAAACAGATAGCTGAAAAATTAGGAAAACAATTTGAGGAAAATAAAACAATAGTCTTTAATCCCTCCTCAGGAGGGGACCCAGAGGTTGTAATGCACAGTTTTAATTGTAGAGGGGAATTTTTCTACTGTAATTCAACACCACTGTTTAATAGTACTTGGAAGGAGACTAATGGGATTTGGACTCGTATTGGAGAGTCAAATGATAGTGCTACTATCACACTAAATGATAGTGATACTATCACACTCCAATGTAAAATAAGGCAAATTATAAACTTGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCATCAAAGGACAAATTAGCTGTTTATCAAACATTACAGGGCTGCTATTAGTAAGAGATGGTGGCAATAACACGAACGGGACCGAGATCTTCAGACCTGTAGGAGGAGAAATGAGGGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAAAATTGAACCATTAGGAGTAGCACCCACCAGGGCAAAGAGAAGAGTGGTGCAGAGAGAGAAAAGAGCGACATTGGGAGCTCTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACGGTACAGGCCAGACTATTATTGTCTGGTATAGTGCAACAGCAGAACAATTTGCTGAGAGCTATTGAGGCGCAACAGCATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTAAGGGATCAACAGCTCCTGGGGATTTGGGGTTGCTCTGGAAAACTCATCTGCACCACTACTGTGCCTTGGAATACTAGTTGGAGTAATAAATCTCTGGAAAAAATTTGGAATAATATGACCTGGATGGAGTGGGAAAGAGAAATTGACAATTACACAAGCTTAATATACACCTTACTTGAAGAATCGCAGAACCAGCAAGAAAAAAATGAAAAAGAATTATTGGAATTAGATACATGGGCAAGTTTGTGGAATTGGTTTGACATAACAAACTGGCTGTGGTATATAAAAATATTCATAATGATAATAGGAGGCTTGGTAGGTTTAAGAATAGTTTTTACTGTACTTTCTATAGTGAATAGAGTTAGGCAGGGATACTCACCATTATCGTTCCAGATCCACCCCCCAGCTCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGGAGAAGGTGGAGAGAGAGACAGAGACAGATCCGGTCCATTAGTGAACGGATTCTTAGCACTTTTCTGGGTCGACCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAGCGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCTCTCAAATACGGGTGGAGTCTCCTACAATATTGGAGCCAGGAACTAAAGAATAGTGCTGTCAGCTTGCTCAACGCCACAGCCATAGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAATATTACAAAGAGCTTGTAGAGCTATTCTCCATATACCTACAAGAATAAGACAGGGCTTGGAAAGGGCTTTGCTATAAGATGGGTGGCAAATGGTCAAAAAGTAA" @@ -4793,7 +4793,7 @@ "subtype_start": 8376, "subtype_end": 8469, "orientation": "forward", - "distance": 0.886666666666666, + "distance": 0.5884955752212387, "protein": "RSTPQLRGDPTGPKESKEKVERETETDPVH", "aminoacids": "RSTPQLRGDPTGPKESKEKVERETETDPVH**", "nucleotides": "AGATCCACCCCCCAGCTCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGGAGAAGGTGGAGAGAGAGACAGAGACAGATCCGGTCCATTAGTGA" @@ -4805,7 +4805,7 @@ "subtype_start": 8377, "subtype_end": 8653, "orientation": "forward", - "distance": 0.3626373626373627, + "distance": 0.3690449563855961, "protein": "DPPPSSEGTRQARRNRRRRWRERQRQIRSISERILSTFLGRPAEPVPLQLPPLERLTLDCSEDCGTSGTQGVGSSQIRVESPTILEPGTKE", "aminoacids": "DPPPSSEGTRQARRNRRRRWRERQRQIRSISERILSTFLGRPAEPVPLQLPPLERLTLDCSEDCGTSGTQGVGSSQIRVESPTILEPGTKE*", "nucleotides": "GATCCACCCCCCAGCTCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGGAGAAGGTGGAGAGAGAGACAGAGACAGATCCGGTCCATTAGTGAACGGATTCTTAGCACTTTTCTGGGTCGACCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAGCGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCTCTCAAATACGGGTGGAGTCTCCTACAATATTGGAGCCAGGAACTAAAGAATAG" @@ -4817,7 +4817,7 @@ "subtype_start": 8796, "subtype_end": 9417, "orientation": "forward", - "distance": 0.5040650406503988, + "distance": 0.4484304932735389, "protein": "MGGKWSKSKLFGWPAVRERMRRAEPAAEPAADGVGAASRDLERHGAITSSNTPTTNAACAWLEAQEEEEVGFPVRPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIHSPKRQEILDLWVYHTQGFFPDWDNYTPGPGIRYPLTFGWCFKLVPVEPDKVEEANEGENNCLLHPMSQHGMEDPEREVLEWRFDSRLAFRHVARELHPEYYKDC", "aminoacids": "MGGKWSKSKLFGWPAVRERMRRAEPAAEPAADGVGAASRDLERHGAITSSNTPTTNAACAWLEAQEEEEVGFPVRPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIHSPKRQEILDLWVYHTQGFFPDWDNYTPGPGIRYPLTFGWCFKLVPVEPDKVEEANEGENNCLLHPMSQHGMEDPEREVLEWRFDSRLAFRHVARELHPEYYKDC*", "nucleotides": "ATGGGTGGCAAATGGTCAAAAAGTAAGCTATTTGGATGGCCTGCTGTAAGGGAAAGAATGAGAAGAGCTGAGCCAGCAGCAGAGCCAGCAGCAGATGGGGTGGGAGCAGCATCTCGAGACCTGGAAAGACACGGAGCAATCACAAGTAGCAATACACCAACTACCAATGCTGCTTGTGCCTGGCTAGAAGCACAAGAAGAGGAGGAGGTGGGTTTTCCAGTCAGACCTCAGGTACCTTTAAGACCAATGACTTACAAAGCGGCTGTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCACTCCCCAAAAAGACAAGAGATCCTTGATCTGTGGGTCTATCATACACAAGGTTTCTTCCCTGATTGGGATAACTACACACCAGGGCCAGGGATCAGATATCCACTGACCTTTGGATGGTGCTTCAAGTTAGTACCAGTGGAGCCAGATAAGGTAGAAGAGGCCAATGAAGGAGAGAATAACTGCTTGTTACACCCTATGAGCCAGCATGGGATGGAGGACCCGGAGAGAGAAGTGTTAGAGTGGAGGTTTGACAGCCGCCTGGCATTTCGTCACGTGGCCCGAGAGCTGCATCCGGAGTACTACAAGGACTGCTGA" @@ -4831,7 +4831,7 @@ "subtype_start": 140, "subtype_end": 1643, "orientation": "forward", - "distance": 0.20240000000000014, + "distance": 0.24610894941634254, "protein": "MGARASVLSGGELDRWERIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSKGCRQILEQLQPSLQTGSEELKSLYNTVATLYCVHQKIDVKDTKEALDKIEEEQNKSKKKTQQAAADTGNNSQTSQASQNYPIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKESFRDYVDRFYKTLRAEQCTQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTTPGTIMMQRGNFRNQRKNVKCFNCGKEGHIAKNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETTTPSQKQEPVDKELYPLASLRSLFGNDPSSQ", "aminoacids": "MGARASVLSGGELDRWERIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSKGCRQILEQLQPSLQTGSEELKSLYNTVATLYCVHQKIDVKDTKEALDKIEEEQNKSKKKTQQAAADTGNNSQTSQASQNYPIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKESFRDYVDRFYKTLRAEQCTQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTTPGTIMMQRGNFRNQRKNVKCFNCGKEGHIAKNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETTTPSQKQEPVDKELYPLASLRSLFGNDPSSQ*", "nucleotides": "ATGGGTGCGAGAGCGTCGGTATTAAGCGGGGGAGAATTAGATAGATGGGAAAGAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAAATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAGCGGTTCGCAGTTAATCCTGGCCTGTTAGAAACATCAAAAGGCTGTAGACAAATATTGGAACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATATAATACAGTAGCAACCCTCTATTGTGTGCATCAAAAGATAGATGTAAAAGACACCAAGGAAGCTTTAGATAAGATAGAGGAAGAGCAAAACAAAAGTAAGAAAAAAACACAGCAAGCAGCAGCTGACACAGGAAACAACAGCCAGACCAGCCAGGCCAGCCAAAATTACCCTATAGTGCAGAACATCCAGGGGCAAATGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGGATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCCTGGGACTAAATAAAATAGTAAGGATGTATAGCCCTACCAGCATTCTGGACATAAGACAAGGACCAAAGGAATCCTTTAGAGACTATGTAGACCGGTTCTATAAAACTCTAAGAGCCGAACAATGTACACAGGAGGTAAAAAATTGGATGACAGAAACATTATTGGTCCAAAATGCAAACCCAGATTGCAAGACTATTTTAAAAGCATTAGGACCAGCAGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCTGGCCATAAAGCAAGAGTTTTGGCAGAAGCAATGAGCCAAGTAACAACTCCAGGTACCATAATGATGCAGAGAGGCAATTTCAGGAACCAGAGAAAGAATGTTAAGTGTTTCAACTGTGGCAAAGAAGGGCATATAGCTAAAAATTGCAGGGCCCCTAGAAAAAGGGGCTGTTGGAAATGTGGAAAAGAAGGACACCAAATGAAAGATTGCACTGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGGAGGCCAGGGAATTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAGGAGACAACAACTCCCTCTCAGAAGCAGGAGCCGGTAGACAAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAA" @@ -4843,7 +4843,7 @@ "subtype_start": 1435, "subtype_end": 4447, "orientation": "forward", - "distance": 0.10767696909272173, + "distance": 0.14797358397500882, "protein": "FFRENLAFPQGEAREFSSEQTRANSPTRRELQVWGGDNNSLSEAGAGRQGTVSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMTLPGRWKPKMIGGIGGFIKVRQYDQILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIDELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTEVVPLTREAELELAENREILKEPVHGVYYDPTKDLIAELQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQRETWDTWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKDKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIDKAQDDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGSNFISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVYIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED", "aminoacids": "FFRENLAFPQGEAREFSSEQTRANSPTRRELQVWGGDNNSLSEAGAGRQGTVSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMTLPGRWKPKMIGGIGGFIKVRQYDQILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIDELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTEVVPLTREAELELAENREILKEPVHGVYYDPTKDLIAELQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQRETWDTWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKDKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIDKAQDDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVTTIHTDNGSNFISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVYIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*", "nucleotides": "TTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGGAGGCCAGGGAATTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAGGAGACAACAACTCCCTCTCAGAAGCAGGAGCCGGTAGACAAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGACATGACTTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACTTGTAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTAACTCAAATTGGTTGCACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATCTGTACAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATATAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCCGCAGGGTTAAAAAAGAAAAAGTCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATAAAGACTTCAGGAAGTATACTGCATTTACCATACCTAGTATAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGACATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGATGAATTAAGACAACATCTGTTGAAGTGGGGATTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGATATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGTTGCCAGAAAAGGACAGTTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTGAATTGGGCAAGTCAGATTTACCCAGGGATTAAAGTAAAGCAATTATGTAAACTCCTTAGGGGAACCAAGGCACTAACAGAAGTAGTACCACTAACAAGAGAAGCAGAGCTAGAGCTGGCAGAAAACAGGGAAATTCTAAAAGAACCAGTACATGGAGTGTATTATGACCCAACAAAAGACTTAATAGCAGAGTTACAGAAGCAGGGGCAAGGCCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGGAAATATGCAAGAATGAGAGGTGCCCACACTAATGATGTAAAGCAACTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAGTTTAAACTACCCATACAAAGAGAAACATGGGACACATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAATTTGTCAATACCCCTCCCTTAGTAAAATTATGGTACCAGTTAGAGAAAGAACCTATAGTAGGAGCAGAAACTTTCTATGTAGATGGTGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAACAGAGGAAGACAAAAAGTTGTCTCCCTAACTGATACAACAAATCAGAAGACTGAGTTACAAGCAATTCATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATAAAAGTGAATCAGAGTTAGTTAATCAAATAATAGAACAGTTAATAAAAAAGGACAAGGTATACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTGCTGGAATCAGGAAAGTACTATTTTTAGATGGAATAGATAAGGCCCAAGATGACCATGAGAAATATCACAGTAATTGGAGGGCAATGGCTAGTGATTTTAACCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGCCAGTTAAAAGGGGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAACTGGATTGTACACACTTAGAAGGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGGTATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTATCTTAAAATTAGCAGGAAGATGGCCAGTAACAACAATACATACAGACAATGGCAGCAATTTCATCAGTACTACAGTTAAGGCCGCCTGCTGGTGGGCGGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATCATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATACATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATTACAAAACTTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGACATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG" @@ -4855,7 +4855,7 @@ "subtype_start": 4391, "subtype_end": 4970, "orientation": "forward", - "distance": 0.296875, + "distance": 0.32379004771642805, "protein": "MENRWQVMIVWQVDRMRIRTWKSLVKHHMYISRKAKGWVYKHHYDSIHPRISSEVHIPLGDAKLVITTYWGLHTGERDWHLGQGVSIEWRKERYSTQVDPGLADQLIHRYYFDCFSESAIRNAILGRIVSPSCDYQAGHNKVGSLQYLALAALITPKKIKPPLPSVKKLTEDRWNKPQKTKGHRGSHTMNGH", "aminoacids": "MENRWQVMIVWQVDRMRIRTWKSLVKHHMYISRKAKGWVYKHHYDSIHPRISSEVHIPLGDAKLVITTYWGLHTGERDWHLGQGVSIEWRKERYSTQVDPGLADQLIHRYYFDCFSESAIRNAILGRIVSPSCDYQAGHNKVGSLQYLALAALITPKKIKPPLPSVKKLTEDRWNKPQKTKGHRGSHTMNGH*", "nucleotides": "ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGGACATGGAAAAGTTTAGTAAAACACCATATGTATATTTCAAGGAAAGCTAAGGGATGGGTTTATAAGCATCACTATGACAGTATTCATCCAAGAATAAGTTCAGAAGTTCACATCCCACTAGGGGATGCGAAATTGGTAATAACAACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCACTTGGGTCAGGGAGTCTCCATAGAATGGAGAAAGGAGAGATATAGCACACAAGTAGACCCTGGCCTAGCAGACCAACTAATTCATCGGTATTACTTTGATTGTTTTTCAGAATCTGCCATAAGAAATGCCATATTAGGACGTATAGTTAGTCCTAGTTGTGATTATCAAGCAGGACATAACAAGGTAGGATCTCTACAGTACTTGGCACTAGCAGCATTAATAACACCAAAAAAGATAAAGCCACCTTTGCCTAGTGTTAAGAAACTGACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACACTAG" @@ -4867,7 +4867,7 @@ "subtype_start": 4909, "subtype_end": 5200, "orientation": "forward", - "distance": 0.30208333333333326, + "distance": 0.32760957975598726, "protein": "MEQAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHSLGQHIYETYGDTWAGVEAITRILQQLLFIHFRIGCQHSRIGIIQRRRARNGTSRS", "aminoacids": "MEQAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHSLGQHIYETYGDTWAGVEAITRILQQLLFIHFRIGCQHSRIGIIQRRRARNGTSRS*", "nucleotides": "ATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACACTAGAGCTTTTAGAGGAGCTTAAGAATGAAGCTGTTAGACACTTCCCTAGGCCATGGCTCCACAGCTTAGGGCAACATATCTATGAAACATATGGAGATACTTGGGCAGGAGTGGAAGCCATAACAAGAATTCTGCAACAACTGCTGTTTATTCATTTCAGAATTGGGTGTCAACATAGCAGAATAGGCATCATTCAACGGAGGAGAGCAAGAAATGGAACCAGTAGATCCTAG" @@ -4879,7 +4879,7 @@ "subtype_start": 5180, "subtype_end": 5395, "orientation": "forward", - "distance": 0.38888888888888884, + "distance": 0.3854625550660793, "protein": "MEPVDPRLEPWKHPGSQPRTACTSCYCKQCCFHCQVCFITKGLGISYGRKKRRQRRRAHQDSQTHQASLSKQ", "aminoacids": "MEPVDPRLEPWKHPGSQPRTACTSCYCKQCCFHCQVCFITKGLGISYGRKKRRQRRRAHQDSQTHQASLSKQ", "nucleotides": "ATGGAACCAGTAGATCCTAGATTAGAGCCCTGGAAGCATCCAGGAAGTCAGCCTAGGACTGCTTGTACCTCTTGTTATTGTAAGCAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAACAAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCATCAAGACAGTCAGACTCATCAAGCTTCTCTATCAAAGCAG" @@ -4891,7 +4891,7 @@ "subtype_start": 5319, "subtype_end": 5395, "orientation": "forward", - "distance": 0.34615384615384626, + "distance": 0.35828025477707015, "protein": "MAGRSGDSDEELIKTVRLIKLLYQSS", "aminoacids": "MAGRSGDSDEELIKTVRLIKLLYQSS", "nucleotides": "ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCATCAAGACAGTCAGACTCATCAAGCTTCTCTATCAAAGCAGT" @@ -4903,7 +4903,7 @@ "subtype_start": 5411, "subtype_end": 5657, "orientation": "forward", - "distance": 0.44999999999999996, + "distance": 0.42056074766355134, "protein": "MQPLEISAIVALVVAIIIAIVVWSIVLIEYRKILRQRKIDRIIDRIRERAEDSGNESEGDQEELSALVVEMGHDAPWDVNDL", "aminoacids": "MQPLEISAIVALVVAIIIAIVVWSIVLIEYRKILRQRKIDRIIDRIRERAEDSGNESEGDQEELSALVVEMGHDAPWDVNDL*", "nucleotides": "ATGCAACCTTTAGAAATATCAGCAATAGTAGCATTAGTAGTAGCAATAATAATAGCAATAGTTGTGTGGTCCATAGTACTCATAGAATATAGGAAAATATTAAGACAAAGAAAAATAGACAGGATAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGCGAGGGGGATCAGGAAGAATTATCAGCACTTGTTGTGGAGATGGGGCACGATGCTCCTTGGGATGTTAATGATCTGTAG" @@ -4915,7 +4915,7 @@ "subtype_start": 5574, "subtype_end": 8124, "orientation": "forward", - "distance": 0.44534746760895216, + "distance": 0.41803024942508427, "protein": "MRARGIRKNYQHLLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEATTTLFYASDAKAYGTEVHNVWATHACVPTDPNPQEVVLGNVTENFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTNYNNTNTTSTKNTTPSTTASSGERMGEGEIKNCSFNITTSLRDKMQKEYALFYRPDIVPIDNDNTSYRLISCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNNKKFNGSGPCTNVSTIQCTHGIRPVVSTQLLLNGSLAEEEIVIRSENFSDNAKTIIVHLKDSVEITCIRPNNNTRKSIPMGPGKAFFATGAIIGDIRQAHCKINKTKWNNTLDQIFKKLREQFGNNKTIIFNHSSGGDPEIVTHNFNCGGEFFYCNTSKLFNSTWNETSSWKDESNGTITLPCRIKQIINLWQEVGKAMYAPPIRGLIKCSSNITGLLITRDGGKNNESNTTEIFRPEGGNMKDNWRSELYKYKVVKIEPLGIAPTKAKRRVVQREKRAVGIGAMFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKTLEQIWDNMTWMQWEREIDNYTSLIYTLIEESQNQQEKNELELLELDKWASLWNWFDITKWLWYIKIFIMIVGGLVGLRIVFAVLSIANRVRQGYSPLSFQTHPPAPRGPDRPEGIGEEGGERDRDRSGPLVNGFLAIIWVDLRSLCLFSYHRLRDLLLIVTRIVELLGRGGWELLKYWWNLLQYWSQELKNSAISLLNATAIAVAEGTDRIIEVLQRAGRAFLNIPRRIRQGLERALL", "aminoacids": "MRARGIRKNYQHLLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEATTTLFYASDAKAYGTEVHNVWATHACVPTDPNPQEVVLGNVTENFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTNYNNTNTTSTKNTTPSTTASSGERMGEGEIKNCSFNITTSLRDKMQKEYALFYRPDIVPIDNDNTSYRLISCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNNKKFNGSGPCTNVSTIQCTHGIRPVVSTQLLLNGSLAEEEIVIRSENFSDNAKTIIVHLKDSVEITCIRPNNNTRKSIPMGPGKAFFATGAIIGDIRQAHCKINKTKWNNTLDQIFKKLREQFGNNKTIIFNHSSGGDPEIVTHNFNCGGEFFYCNTSKLFNSTWNETSSWKDESNGTITLPCRIKQIINLWQEVGKAMYAPPIRGLIKCSSNITGLLITRDGGKNNESNTTEIFRPEGGNMKDNWRSELYKYKVVKIEPLGIAPTKAKRRVVQREKRAVGIGAMFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKTLEQIWDNMTWMQWEREIDNYTSLIYTLIEESQNQQEKNELELLELDKWASLWNWFDITKWLWYIKIFIMIVGGLVGLRIVFAVLSIANRVRQGYSPLSFQTHPPAPRGPDRPEGIGEEGGERDRDRSGPLVNGFLAIIWVDLRSLCLFSYHRLRDLLLIVTRIVELLGRGGWELLKYWWNLLQYWSQELKNSAISLLNATAIAVAEGTDRIIEVLQRAGRAFLNIPRRIRQGLERALL*", "nucleotides": "ATGAGAGCGAGGGGGATCAGGAAGAATTATCAGCACTTGTTGTGGAGATGGGGCACGATGCTCCTTGGGATGTTAATGATCTGTAGTGCTACAGAAAAATTGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAAAGAAGCAACTACCACTCTATTTTATGCATCAGATGCTAAAGCATATGGTACAGAGGTACATAATGTTTGGGCTACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGTATTGGGAAATGTGACAGAGAATTTTAACATGTGGAAAAATGACATGGTAGAACAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTGAATTGCACTAATTATAATAACACCAATACCACTAGTACCAAGAATACCACCCCTAGTACCACTGCTAGTAGCGGGGAAAGGATGGGGGAAGGAGAAATAAAAAACTGCTCTTTCAATATCACCACAAGCCTAAGAGATAAGATGCAGAAAGAATATGCACTCTTTTATAGACCTGATATAGTACCAATAGATAATGATAATACTAGTTATAGGTTGATAAGTTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTATTGTGCCCCAGCTGGTTTTGCGATTCTAAAGTGTAACAATAAGAAGTTCAATGGATCAGGACCATGTACAAATGTCAGCACAATACAATGTACACATGGAATTAGGCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTCTAGCAGAAGAAGAGATAGTAATTAGATCTGAAAATTTCTCAGACAATGCTAAAACCATAATAGTACATCTGAAGGATTCTGTAGAAATTACTTGTATAAGACCCAACAACAATACAAGAAAAAGTATACCTATGGGACCAGGGAAAGCATTTTTTGCAACAGGAGCCATAATAGGAGATATAAGACAAGCACATTGTAAAATTAATAAAACGAAATGGAATAACACTTTAGACCAGATATTTAAAAAGTTAAGAGAACAATTTGGGAATAATAAGACAATAATCTTTAATCACTCCTCAGGAGGGGACCCAGAAATTGTAACGCACAATTTTAATTGTGGAGGGGAATTTTTCTACTGTAATACATCAAAACTGTTTAATAGTACTTGGAATGAGACTAGTTCTTGGAAGGATGAGTCAAATGGCACTATCACACTCCCATGCAGAATAAAGCAAATTATAAACCTGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCATTAGAGGACTCATTAAATGTTCATCAAATATCACAGGGCTGCTAATAACAAGAGATGGTGGGAAAAATAATGAGAGCAACACCACCGAGATTTTCAGACCTGAAGGAGGAAATATGAAGGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAAAATTGAACCATTAGGAATAGCACCCACCAAGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTATGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAATAACGCTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAACAGCAGAACAATTTGCTGAGGGCTATTGAGGCGCAACAGCATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTAAAGGATCAACAGCTCCTGGGAATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCTTGGAATGCTAGTTGGAGTAATAAAACTCTGGAACAGATTTGGGATAACATGACCTGGATGCAATGGGAAAGAGAAATTGACAATTACACAAGCTTGATATACACTTTAATTGAAGAATCGCAAAACCAACAAGAAAAGAATGAACTAGAATTATTGGAATTAGATAAATGGGCAAGTTTGTGGAATTGGTTTGACATAACAAAGTGGCTGTGGTATATAAAAATATTCATAATGATAGTAGGAGGCTTGGTAGGTTTAAGAATAGTTTTTGCTGTGCTTTCTATAGCGAATAGAGTTAGGCAGGGATACTCACCATTATCGTTTCAGACCCACCCCCCAGCCCCGAGGGGACCCGACAGGCCAGAAGGAATCGGAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGGACCATTAGTGAACGGATTCTTAGCAATTATCTGGGTCGACCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAACGAGGATTGTGGAACTTCTGGGACGCGGGGGGTGGGAACTCCTCAAGTATTGGTGGAATCTCCTGCAGTATTGGAGTCAGGAACTAAAGAATAGTGCTATTAGCTTGCTTAATGCTACAGCCATAGCAGTAGCTGAGGGGACAGACAGGATTATAGAAGTATTACAAAGAGCTGGGAGAGCTTTTCTCAACATACCTAGAAGAATAAGACAGGGCTTGGAAAGGGCTTTGCTATAA" @@ -4927,7 +4927,7 @@ "subtype_start": 7705, "subtype_end": 7798, "orientation": "forward", - "distance": 0.6000000000000001, + "distance": 0.4918032786885247, "protein": "RPTPQPRGDPTGQKESEKKVERETETDPDH", "aminoacids": "RPTPQPRGDPTGQKESEKKVERETETDPDH**", "nucleotides": "AGACCCACCCCCCAGCCCCGAGGGGACCCGACAGGCCAGAAGGAATCGGAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGGACCATTAGTGA" @@ -4939,7 +4939,7 @@ "subtype_start": 7706, "subtype_end": 7982, "orientation": "forward", - "distance": 0.3296703296703296, + "distance": 0.3471418653089562, "protein": "DPPPSPEGTRQARRNRRRRWRERQRQIRTISERILSNYLGRPAEPVPLQLPPLERLTLDCNEDCGTSGTRGVGTPQVLVESPAVLESGTKE", "aminoacids": "DPPPSPEGTRQARRNRRRRWRERQRQIRTISERILSNYLGRPAEPVPLQLPPLERLTLDCNEDCGTSGTRGVGTPQVLVESPAVLESGTKE*", "nucleotides": "GACCCACCCCCCAGCCCCGAGGGGACCCGACAGGCCAGAAGGAATCGGAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGGACCATTAGTGAACGGATTCTTAGCAATTATCTGGGTCGACCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAACGAGGATTGTGGAACTTCTGGGACGCGGGGGGTGGGAACTCCTCAAGTATTGGTGGAATCTCCTGCAGTATTGGAGTCAGGAACTAAAGAATAG" @@ -4951,7 +4951,7 @@ "subtype_start": 8125, "subtype_end": 8752, "orientation": "forward", - "distance": 0.29182692307692304, + "distance": 0.32004639881893915, "protein": "MGGKWSKSSVVGWPAIRERMRRAEPAAEPAADGVGAASRDLEKHGAITSSNTAATNADCAWLEAQEEEEVGFPVRPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIYSQKRQDILDLWVYHTQGYFPDWQNYTPGPGIRYPLTFGWCFKLVPVEPDKVEEANEGENNSLLHPMSLHGMDDPEKEVLVWRFDSRLAFHHMARELHPEYYKDC", "aminoacids": "MGGKWSKSSVVGWPAIRERMRRAEPAAEPAADGVGAASRDLEKHGAITSSNTAATNADCAWLEAQEEEEVGFPVRPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIYSQKRQDILDLWVYHTQGYFPDWQNYTPGPGIRYPLTFGWCFKLVPVEPDKVEEANEGENNSLLHPMSLHGMDDPEKEVLVWRFDSRLAFHHMARELHPEYYKDC*", "nucleotides": "ATGGGTGGTAAGTGGTCAAAAAGTAGTGTGGTTGGATGGCCTGCTATAAGGGAAAGAATGAGACGAGCTGAGCCAGCAGCAGAGCCAGCAGCAGATGGGGTGGGAGCAGCATCTAGAGACCTGGAAAAACATGGAGCAATCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGTGCCTGGCTAGAAGCACAAGAGGAGGAGGAGGTGGGTTTTCCAGTCAGGCCTCAGGTACCTTTAAGACCAATGACTTATAAGGCAGCTGTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGTTAATTTACTCCCAGAAAAGACAAGATATCCTTGATCTGTGGGTCTACCACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGATAAGATATCCACTGACCTTTGGATGGTGCTTCAAGCTAGTGCCAGTTGAGCCAGATAAGGTAGAAGAGGCCAATGAAGGAGAGAACAACAGCTTGTTACACCCTATGAGCCTGCATGGGATGGATGACCCAGAGAAAGAAGTGTTAGTATGGAGATTTGACAGTCGCCTGGCATTTCATCACATGGCCCGAGAGCTGCATCCGGAGTACTACAAGGATTGCTGA" @@ -4965,7 +4965,7 @@ "subtype_start": 200, "subtype_end": 1700, "orientation": "forward", - "distance": 0.3737903225806454, + "distance": 0.3761259433579487, "protein": "MGARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSKGCRQILEQLQPSLQTGSEELKSLYNTVATLYCVHQQIDVKDTKEALDKIEEEQNKSKKKVQQAATDTGNNSQASQNYPIVQNLQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKESFRDYVDRFYKTLRAEQCTQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTTPGAIMMQRGNFRSQRKTVKCFNCGKEGHIAKNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPAESFRFGEETTTPSQKQEPIDKELYPLASLRSLFGNDPSSQ", "aminoacids": "MGARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSKGCRQILEQLQPSLQTGSEELKSLYNTVATLYCVHQQIDVKDTKEALDKIEEEQNKSKKKVQQAATDTGNNSQASQNYPIVQNLQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKESFRDYVDRFYKTLRAEQCTQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTTPGAIMMQRGNFRSQRKTVKCFNCGKEGHIAKNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPAESFRFGEETTTPSQKQEPIDKELYPLASLRSLFGNDPSSQ*R*", "nucleotides": "ATGGGTGCGAGAGCGTCGGTATTAAGCGGGGGAGAATTAGATAGGTGGGAAAAAATTCGGTTAAGGCCAGGAGGAAAGAAAAAATATAAATTAAAACATATAGTATGGGCAAGCAGGGAACTAGAACGGTTTGCAGTTAATCCTGGCCTGTTAGAAACATCAAAAGGCTGTAGACAAATATTGGAACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATATAATACAGTAGCAACCCTCTATTGTGTGCATCAACAGATAGATGTAAAAGACACCAAGGAAGCTTTAGATAAGATAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGTACAGCAAGCAGCAACTGACACAGGAAACAACAGCCAGGCCAGCCAAAATTACCCTATAGTGCAGAATCTCCAGGGGCAAATGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGACTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGGATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGGATGTATAGTCCTACCAGCATTCTGGACATAAGACAAGGACCAAAGGAATCCTTTAGAGACTATGTAGACCGGTTCTATAAAACTCTAAGAGCCGAACAATGTACACAGGAGGTAAAAAATTGGATGACAGAAACATTATTGGTCCAAAATGCAAACCCAGACTGCAAGACTATTTTAAAAGCATTAGGACCAGCAGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCTGGCCATAAAGCAAGAGTTTTGGCAGAAGCAATGAGCCAAGTAACAACTCCAGGTGCCATAATGATGCAGAGAGGCAATTTCAGGAGCCAAAGAAAGACTGTTAAGTGTTTCAACTGTGGCAAAGAAGGGCATATAGCTAAAAATTGCAGGGCCCCTAGAAAAAGGGGCTGTTGGAAATGTGGAAAAGAAGGACACCAAATGAAAGATTGCACTGAGAGACAGGCTAATTTTTTAGGGAAGATCTGGCCTTCCCACAAGGGGAGGCCAGGGAATTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGCAGAGAGCTTCAGGTTCGGGGAGGAGACAACAACTCCCTCTCAGAAGCAGGAGCCGATAGACAAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAG" @@ -4977,7 +4977,7 @@ "subtype_start": 1492, "subtype_end": 4504, "orientation": "forward", - "distance": 0.1734795613160518, + "distance": 0.21863141758600757, "protein": "FFREDLAFPQGEAREFSSEQTRANSPTSRELQVRGGDNNSLSEAGADRQGTVSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMTLPGRWKPKMIGGIGGFIKVRQYDQILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIDELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCRLLKGTKALTEVVPLTREAELELAENREILKEPVHGVYYDPTKDLIAELQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQRETWDTWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKDKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIDKAQDDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGGNFISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVYIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED", "aminoacids": "FFREDLAFPQGEAREFSSEQTRANSPTSRELQVRGGDNNSLSEAGADRQGTVSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMTLPGRWKPKMIGGIGGFIKVRQYDQILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIDELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCRLLKGTKALTEVVPLTREAELELAENREILKEPVHGVYYDPTKDLIAELQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQRETWDTWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKDKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIDKAQDDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGGNFISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVYIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*", "nucleotides": "TTTTTTAGGGAAGATCTGGCCTTCCCACAAGGGGAGGCCAGGGAATTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGCAGAGAGCTTCAGGTTCGGGGAGGAGACAACAACTCCCTCTCAGAAGCAGGAGCCGATAGACAAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAGGGGGGCAACTAAAGGAAGCTCTATTAGACACAGGAGCAGATGATACAGTATTAGAAGACATGACTTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACTTGTAGAAATCTGTGGACATAAAGCTATAGGTACAGTTTTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAAATTGGTTGCACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATCTGTACAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATATAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCCGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATAAAGACTTCAGGAAGTATACTGCATTTACCATACCTAGTATAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGACATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGATGAATTAAGACAACATCTGTTGAAGTGGGGATTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGGTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGTTGCCAGAAAAAGACAGTTGGACTGTTAATGACATACAGAAGTTAGTGGGAAAATTGAATTGGGCAAGTCAGATTTACCCAGGGATTAAGGTAAAGCAATTATGTAGACTCCTTAAGGGAACCAAGGCACTAACAGAAGTAGTACCACTAACAAGAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTCTAAAAGAACCAGTACATGGAGTGTATTATGACCCAACAAAAGACTTAATAGCAGAGTTACAGAAGCAGGGACAAGGCCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGAGGTGCCCACACTAATGATGTAAAACAGCTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAGTTTAAACTACCCATACAAAGAGAAACATGGGACACATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTTTATGTAGATGGTGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAATAGAGGAAGACAAAAAGTTGTCTCCCTAACTGACACCACAAATCAGAAGACTGAGTTACAAGCAATTCATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATCCAAGCACAACCAGATAAAAGTGAATCAGAGTTAGTTAATCAAATAATAGAACAGTTAATAAAAAAGGACAAAGTATACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTGCTGGAATCAGGAAAGTACTATTTTTAGATGGAATAGATAAGGCCCAAGATGATCATGAGAAATATCACAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGCCAGTTAAAAGGGGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAACTGGATTGTACACACTTAGAAGGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTATCTTAAAATTAGCAGGAAGATGGCCAGTAAAAACAATACATACAGACAATGGTGGCAATTTCATCAGTACTACAGTTAAGGCCGCCTGTTGGTGGGCGGGGATCAAGCAGGAATTTGGCATACCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATCATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATACATACACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATTACAAAACTTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGACATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG" @@ -4989,7 +4989,7 @@ "subtype_start": 4448, "subtype_end": 5027, "orientation": "forward", - "distance": 0.33854166666666674, + "distance": 0.3531840904151272, "protein": "MENRWQVMIVWQVDRMRIRTWKSLVKHHMYISKKAKGWIYKHHYDSINPKISSEVHIPLGDAKLVITTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPGLADRLIHLYYFDCFSESAIRNAILGRIVSPSCDYQAGHNKVGSLQYLALTALITPKKIKPPLPSVKKLTEDRWNKPQKTKGHRGSHTMNGH", "aminoacids": "MENRWQVMIVWQVDRMRIRTWKSLVKHHMYISKKAKGWIYKHHYDSINPKISSEVHIPLGDAKLVITTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPGLADRLIHLYYFDCFSESAIRNAILGRIVSPSCDYQAGHNKVGSLQYLALTALITPKKIKPPLPSVKKLTEDRWNKPQKTKGHRGSHTMNGH*", "nucleotides": "ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGGACATGGAAAAGTTTAGTAAAACACCATATGTATATTTCAAAGAAAGCTAAGGGATGGATTTATAAGCATCACTATGACAGTATTAATCCAAAAATAAGTTCAGAAGTTCACATCCCACTAGGGGATGCAAAATTGGTAATAACAACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGGAAAAGGAGATATAGCACACAAGTAGACCCTGGCCTAGCAGACCGACTAATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACGTATAGTTAGTCCTAGTTGTGATTATCAAGCAGGACATAACAAGGTAGGGTCTCTACAGTACTTGGCACTAACAGCACTAATAACACCAAAAAAGATAAAGCCACCTTTGCCTAGTGTTAAGAAACTGACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACACTAG" @@ -5001,7 +5001,7 @@ "subtype_start": 4966, "subtype_end": 5257, "orientation": "forward", - "distance": 0.17708333333333326, + "distance": 0.22216414009409302, "protein": "MEQAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHSLGQHIYETYGDTWAGVEAIIRILQQLLFIHFRIGCQHSRIGILQRRRARNGASRS", "aminoacids": "MEQAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHSLGQHIYETYGDTWAGVEAIIRILQQLLFIHFRIGCQHSRIGILQRRRARNGASRS*", "nucleotides": "ATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACACTAGAGCTTTTAGAGGAGCTTAAGAATGAAGCTGTTAGACACTTTCCTAGGCCATGGCTACACAGCTTAGGGCAACATATCTATGAAACATATGGAGATACTTGGGCAGGAGTGGAAGCCATAATAAGAATTCTGCAACAACTGCTGTTTATTCATTTCAGAATTGGGTGTCAACATAGCAGAATAGGCATCCTTCAACGGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAG" @@ -5013,7 +5013,7 @@ "subtype_start": 5237, "subtype_end": 5452, "orientation": "forward", - "distance": 0.25, + "distance": 0.28735632183908044, "protein": "MEPVDPRLEPWKHPGSQPRTACTSCYCKQCCFHCQVCFITKGLGISYGRKKRRQRRRAHQDSQTHQASLSKQ", "aminoacids": "MEPVDPRLEPWKHPGSQPRTACTSCYCKQCCFHCQVCFITKGLGISYGRKKRRQRRRAHQDSQTHQASLSKQ", "nucleotides": "ATGGAGCCAGTAGATCCTAGATTAGAGCCCTGGAAGCATCCAGGAAGTCAGCCTAGGACTGCTTGTACCTCTTGTTATTGTAAGCAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAACAAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCATCAAGACAGTCAGACTCATCAAGCTTCTCTATCAAAGCAG" @@ -5025,7 +5025,7 @@ "subtype_start": 5376, "subtype_end": 5452, "orientation": "forward", - "distance": 0.5769230769230769, + "distance": 0.48200514138817474, "protein": "MAGRSGDSDEELIKTVRLIKLLYQSS", "aminoacids": "MAGRSGDSDEELIKTVRLIKLLYQSS", "nucleotides": "ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCATCAAGACAGTCAGACTCATCAAGCTTCTCTATCAAAGCAGT" @@ -5037,7 +5037,7 @@ "subtype_start": 5468, "subtype_end": 5708, "orientation": "forward", - "distance": 0.3063291139240505, + "distance": 0.3306914457502049, "protein": "MQPLVISAIVALVVVAIIAIVVWSIVLIEYRKILRQRKIDRIIDRIRERAEDSGNESEGDQEELSALVVEMGHDAPWDVNDL", "aminoacids": "MQPLVISAIVALVVVAIIAIVVWSIVLIEYRKILRQRKIDRIIDRIRERAEDSGNESEGDQEELSALVVEMGHDAPWDVNDL*", "nucleotides": "ATGCAACCTTTAGTAATATCAGCAATAGTAGCATTAGTAGTAGTAGCGATAATAGCAATAGTTGTGTGGTCCATAGTACTCATAGAATATAGGAAAATATTAAGACAAAGAAAAATAGACAGGATAATTGATAGAATAAGGGAAAGAGCAGAAGACAGTGGCAATGAGAGCGAGGGGGATCAGGAAGAATTATCAGCACTTGTTGTGGAGATGGGGCACGATGCTCCTTGGGATGTTAATGATCTGTAG" @@ -5049,7 +5049,7 @@ "subtype_start": 5631, "subtype_end": 8208, "orientation": "forward", - "distance": 0.5249417249417256, + "distance": 0.45848772344150845, "protein": "MRARGIRKNYQHLLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEATTTLFCASDAKAYGTEVHNVWATHACVPTDPNPQEVVLGNVTENFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTNYNNTGANNTTSTNTTTPSTTVSSEERMGEGEIKNCSFNITTSLRDKMQKEYALFYRPDIVPIDNTSYRLISCNTSVITQACPKVTFEPIPIHYCAPAGFAILKCNNKTFNGSGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVIRSENFSDNAKNIIVHLNKSVEITCIRPNNNTRKSIPMGPGKAFFATGAIIGDIRQAHCKINKTKWNNTLEQVFKKLREQFGNNKTIIFNHSSGGDPEIVTHNFNCGGEFFYCNTSKLFNSTWNETSYWKGEGSNNDTITLPCRIKQIINLWQEVGKAMYAPPIRGLIKCSSNITGLLLTRDGGNESETTDTETFRPVGGNMKDNWRSELYKYKVVKIEPLGIAPTKAKRRVVQREKRAVGLGAMFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKNLTQIWDNMTWMQWEKEIDNYTSLIYTLIEESQNQQEKNELELLELDKWASLWNWFDITKWLWYIKIFIMIVGGLVGLRIVFAVLSIANRVRQGYSPLSFQTHLPAPRGPDRPEGIEGEGGERDRDRSGPLVNGFLAIIWVDLRSLCLFSYHRLRDLLLIVTRIVELLGRGGWELLKYWWNLLQYWSQELKNSAISLLNATAIAVAEGTDRIIEVLQRAGRAFLHIPRRIRQGLERALL", "aminoacids": "MRARGIRKNYQHLLWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEATTTLFCASDAKAYGTEVHNVWATHACVPTDPNPQEVVLGNVTENFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTNYNNTGANNTTSTNTTTPSTTVSSEERMGEGEIKNCSFNITTSLRDKMQKEYALFYRPDIVPIDNTSYRLISCNTSVITQACPKVTFEPIPIHYCAPAGFAILKCNNKTFNGSGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVIRSENFSDNAKNIIVHLNKSVEITCIRPNNNTRKSIPMGPGKAFFATGAIIGDIRQAHCKINKTKWNNTLEQVFKKLREQFGNNKTIIFNHSSGGDPEIVTHNFNCGGEFFYCNTSKLFNSTWNETSYWKGEGSNNDTITLPCRIKQIINLWQEVGKAMYAPPIRGLIKCSSNITGLLLTRDGGNESETTDTETFRPVGGNMKDNWRSELYKYKVVKIEPLGIAPTKAKRRVVQREKRAVGLGAMFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKNLTQIWDNMTWMQWEKEIDNYTSLIYTLIEESQNQQEKNELELLELDKWASLWNWFDITKWLWYIKIFIMIVGGLVGLRIVFAVLSIANRVRQGYSPLSFQTHLPAPRGPDRPEGIEGEGGERDRDRSGPLVNGFLAIIWVDLRSLCLFSYHRLRDLLLIVTRIVELLGRGGWELLKYWWNLLQYWSQELKNSAISLLNATAIAVAEGTDRIIEVLQRAGRAFLHIPRRIRQGLERALL*", "nucleotides": "ATGAGAGCGAGGGGGATCAGGAAGAATTATCAGCACTTGTTGTGGAGATGGGGCACGATGCTCCTTGGGATGTTAATGATCTGTAGCGCTACAGAAAAATTGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAAAGAAGCAACTACCACTCTATTTTGTGCATCAGATGCTAAAGCATATGGTACAGAGGTACATAATGTGTGGGCTACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGTATTGGGAAATGTGACAGAGAATTTTAACATGTGGAAAAATGACATGGTAGAACAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGTCTAAAACCATGTGTAAAATTAACCCCACTCTGTGTTACTTTGAATTGCACTAATTATAATAACACTGGTGCCAATAATACCACTAGTACCAATACTACCACCCCTAGTACCACTGTTAGTAGCGAGGAAAGGATGGGGGAAGGAGAAATAAAAAACTGCTCTTTCAATATCACCACAAGCCTAAGAGATAAGATGCAGAAAGAATATGCACTCTTTTATAGACCTGATATAGTACCAATAGATAATACTAGTTATAGGTTGATAAGTTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTAACCTTTGAGCCAATTCCCATACATTATTGTGCCCCAGCTGGTTTTGCGATTCTAAAGTGTAACAATAAGACGTTCAATGGATCAGGACCATGTACAAATGTCAGCACAGTACAATGTACACATGGAATTAGGCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTCTAGCAGAAGAAGAGATAGTAATTAGATCTGAAAATTTCTCAGACAATGCTAAAAACATAATAGTACATCTGAATAAATCTGTAGAAATTACTTGTATAAGACCCAACAACAATACAAGAAAAAGTATACCTATGGGACCAGGGAAAGCATTTTTTGCAACAGGAGCCATAATAGGAGATATAAGACAAGCACATTGTAAAATTAATAAAACGAAATGGAATAACACTTTAGAGCAGGTATTTAAAAAGTTAAGAGAACAATTTGGGAATAATAAGACAATAATCTTTAATCACTCCTCAGGAGGGGACCCAGAAATTGTAACGCACAATTTTAATTGTGGAGGGGAATTTTTCTACTGTAATACATCAAAACTGTTTAATAGTACTTGGAATGAGACTAGTTATTGGAAGGGTGAAGGGTCAAACAATGACACTATCACACTCCCATGCAGAATAAAGCAAATTATAAACCTGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCATCAGAGGACTCATTAAATGTTCATCAAATATCACAGGGCTACTATTAACAAGAGATGGTGGTAACGAGAGCGAGACCACCGACACTGAGACCTTCAGACCTGTAGGAGGAAATATGAAGGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAAAATTGAACCATTAGGAATAGCACCCACCAAGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGATTAGGAGCTATGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAATAACGCTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAACAGCAGAACAATTTGCTGAGGGCTATTGAGGCGCAACAGCATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTAAAGGATCAACAGCTCCTGGGAATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCTTGGAATGCTAGTTGGAGTAATAAAAATCTGACACAGATTTGGGATAACATGACCTGGATGCAATGGGAAAAAGAAATTGACAATTACACAAGCTTAATATACACCTTAATTGAAGAATCGCAAAACCAACAAGAAAAGAATGAACTAGAATTATTGGAATTAGATAAATGGGCAAGTTTGTGGAATTGGTTTGACATAACAAAGTGGCTGTGGTATATAAAAATATTCATAATGATAGTAGGAGGCTTGGTAGGTTTAAGAATAGTTTTTGCTGTGCTTTCTATAGCGAATAGAGTTAGGCAGGGATACTCACCATTATCGTTTCAGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCAGAAGGAATCGAAGGAGAAGGTGGAGAGAGAGACAGAGACAGATCCGGACCATTAGTGAACGGATTCTTAGCAATTATCTGGGTCGACCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAACGAGGATTGTGGAACTTCTGGGACGCGGGGGGTGGGAACTCCTCAAGTATTGGTGGAATCTCCTGCAGTATTGGAGTCAGGAACTAAAGAATAGTGCTATTAGCTTGCTTAATGCTACAGCCATAGCAGTAGCTGAGGGGACAGATAGGATTATAGAAGTATTACAAAGAGCAGGGAGAGCTTTTCTCCACATACCTAGAAGAATAAGACAGGGCTTGGAAAGGGCTTTGCTATAA" @@ -5061,7 +5061,7 @@ "subtype_start": 7789, "subtype_end": 7882, "orientation": "forward", - "distance": 3.5, + "distance": 0.8495145631067962, "protein": "RPTSQPRGDPTGQKESKEKVERETETDPDH", "aminoacids": "RPTSQPRGDPTGQKESKEKVERETETDPDH**", "nucleotides": "AGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCAGAAGGAATCGAAGGAGAAGGTGGAGAGAGAGACAGAGACAGATCCGGACCATTAGTGA" @@ -5073,7 +5073,7 @@ "subtype_start": 7790, "subtype_end": 8066, "orientation": "forward", - "distance": 0.41758241758241765, + "distance": 0.4024571065452235, "protein": "DPPPSPEGTRQARRNRRRRWRERQRQIRTISERILSNYLGRPAEPVPLQLPPLERLTLDCNEDCGTSGTRGVGTPQVLVESPAVLESGTKE", "aminoacids": "DPPPSPEGTRQARRNRRRRWRERQRQIRTISERILSNYLGRPAEPVPLQLPPLERLTLDCNEDCGTSGTRGVGTPQVLVESPAVLESGTKE*", "nucleotides": "GACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCAGAAGGAATCGAAGGAGAAGGTGGAGAGAGAGACAGAGACAGATCCGGACCATTAGTGAACGGATTCTTAGCAATTATCTGGGTCGACCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAACGAGGATTGTGGAACTTCTGGGACGCGGGGGGTGGGAACTCCTCAAGTATTGGTGGAATCTCCTGCAGTATTGGAGTCAGGAACTAAAGAATAG" @@ -5085,7 +5085,7 @@ "subtype_start": 8209, "subtype_end": 8842, "orientation": "forward", - "distance": 0.3285714285714285, + "distance": 0.3463855421686747, "protein": "MGGKWSKSSVVGWPKIRERMRRAEPAAEPAADGVGAASRDLEKHGAITSSNTAATNADCAWLEAQEEEEVGFPVRPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIYSQKRQDILDLWVYHTQGYFPDWQNYTPGPGIRYPLTFGWCFKLVPVEPDKVEEANEGENNSLLHPMSLHGMDDPEKEVLVWRFDSRLAFHHMARELHPEYYKDC", "aminoacids": "MGGKWSKSSVVGWPKIRERMRRAEPAAEPAADGVGAASRDLEKHGAITSSNTAATNADCAWLEAQEEEEVGFPVRPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIYSQKRQDILDLWVYHTQGYFPDWQNYTPGPGIRYPLTFGWCFKLVPVEPDKVEEANEGENNSLLHPMSLHGMDDPEKEVLVWRFDSRLAFHHMARELHPEYYKDC*", "nucleotides": "ATGGGTGGCAAGTGGTCAAAAAGTAGTGTGGTTGGATGGCCTAAAATAAGGGAAAGAATGAGACGAGCTGAGCCAGCAGCAGAACCAGCAGCAGATGGGGTGGGAGCAGCATCTCGAGACCTGGAAAAACATGGAGCAATCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGTGCCTGGCTAGAAGCACAAGAGGAGGAGGAGGTGGGTTTTCCAGTCAGGCCTCAGGTACCTTTAAGACCAATGACTTATAAGGCAGCTGTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCCCAGAAAAGACAAGATATCCTTGATCTGTGGGTCTACCACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGATCAGATATCCACTGACCTTTGGATGGTGCTTCAAGCTAGTACCAGTTGAGCCAGATAAGGTAGAAGAGGCCAATGAAGGAGAGAACAACAGCTTGTTACACCCTATGAGCCTGCATGGGATGGATGACCCAGAGAAAGAAGTGTTAGTATGGAGATTTGACAGTCGCCTGGCATTTCATCACATGGCCCGAGAGCTGCATCCGGAGTACTACAAGGACTGCTGA" @@ -5099,7 +5099,7 @@ "subtype_start": 789, "subtype_end": 2292, "orientation": "forward", - "distance": 0.27679999999999993, + "distance": 0.3086529884032113, "protein": "MGARASVLSGGELDKWEKIRLRPGGKKKYQLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPALQTGSEELKSLFHTVATLYCVHQKIEVKDTKEALEKIEEEQKKSKKKAQQAAADTGNNSQVSQNYPIVQNMQGQMVHQPLSPRTLNAWVKVIEDKAFSPEVIPMFTALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVQAGPVAPGQLREPRGSDIAGTTSNLQEQIAWMTHNPPVPVGEIYKRWILLGLNKIVRMYSPVSILDIKQGPKEPFRDYVDRFYKTLRAEQASQDVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPSHKARVLAEAMSQVANPASIMMQRGNFRNQRKPIKCFNCGKEGHIAKNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKVWPSRKGRPGNFLQSRPEPTAPPEESFRFGEETTTPSQKPEPIDKELYPLASLRSLFGNDPSSQ", "aminoacids": "MGARASVLSGGELDKWEKIRLRPGGKKKYQLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPALQTGSEELKSLFHTVATLYCVHQKIEVKDTKEALEKIEEEQKKSKKKAQQAAADTGNNSQVSQNYPIVQNMQGQMVHQPLSPRTLNAWVKVIEDKAFSPEVIPMFTALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVQAGPVAPGQLREPRGSDIAGTTSNLQEQIAWMTHNPPVPVGEIYKRWILLGLNKIVRMYSPVSILDIKQGPKEPFRDYVDRFYKTLRAEQASQDVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPSHKARVLAEAMSQVANPASIMMQRGNFRNQRKPIKCFNCGKEGHIAKNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKVWPSRKGRPGNFLQSRPEPTAPPEESFRFGEETTTPSQKPEPIDKELYPLASLRSLFGNDPSSQ*", "nucleotides": "ATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAGAATTAGACAAATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATCAGCTAAAACATATAGTATGGGCAAGCAGGGAACTAGAGCGATTTGCAGTTAATCCCGGCCTGTTAGAAACATCGGAGGGCTGTAGACAAATACTAGGGCAACTACAGCCCGCTCTTCAGACAGGATCAGAAGAACTTAAATCACTATTTCATACAGTAGCAACCCTCTATTGTGTGCATCAAAAGATAGAGGTGAAAGACACCAAAGAAGCTTTAGAGAAGATAGAGGAAGAGCAAAAGAAAAGTAAGAAAAAGGCACAGCAAGCAGCCGCTGACACAGGAAATAACAGCCAGGTCAGCCAAAATTACCCTATAGTGCAGAACATGCAGGGACAAATGGTACATCAGCCCCTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAATAGAAGATAAGGCTTTCAGTCCAGAAGTAATACCCATGTTTACAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAATACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATCAATGAGGAAGCTGCAGAATGGGATAGATTACATCCAGTGCAGGCAGGGCCTGTTGCGCCAGGCCAGCTACGAGAGCCAAGGGGAAGTGACATAGCAGGAACTACTAGTAACCTTCAGGAGCAAATAGCATGGATGACACATAATCCACCTGTCCCAGTAGGAGAAATCTATAAAAGATGGATACTTCTGGGATTAAATAAAATAGTAAGAATGTACAGCCCCGTCAGCATTCTGGACATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAAAACTCTAAGAGCTGAGCAGGCTTCACAGGATGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAGAATGCGAACCCAGATTGTAAGACTATTTTGAAAGCATTAGGACCAGCAGCTACATTAGAAGAAATGATGACAGCATGTCAGGGAGTAGGAGGACCCAGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAGCAAATCCAGCTAGCATAATGATGCAGAGAGGCAATTTTAGAAACCAAAGAAAGCCTATTAAGTGTTTCAACTGTGGCAAAGAGGGGCATATTGCTAAAAATTGCAGGGCCCCTAGGAAAAGGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGATTGTACTGAGAGACAGGCTAATTTTTTAGGGAAGGTCTGGCCTTCCCGCAAGGGGAGGCCAGGGAATTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACGACAACTCCCTCTCAGAAACCGGAGCCGATAGACAAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAA" @@ -5111,7 +5111,7 @@ "subtype_start": 2084, "subtype_end": 5096, "orientation": "forward", - "distance": 0.1495513459621136, + "distance": 0.1943357603710517, "protein": "FFREGLAFPQGEAREFPSEQTRANSPTRRELQVWGRDDNSLSETGADRQGTVSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPRVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPIFAIKKKDGNKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRAKIEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPILLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVVPLTAEAELELAENREILKEPVHGVYYDPSKDLIAELQKQGQGQWTYQIYQEPYKNLKTGKYARMRGTHTNDIKQLTEAVQKIATESIVIWGKTPKFKLPIQKETWEAWWIEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDKGRQKVVPLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLKGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQEVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFVHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED", "aminoacids": "FFREGLAFPQGEAREFPSEQTRANSPTRRELQVWGRDDNSLSETGADRQGTVSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPRVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPIFAIKKKDGNKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRAKIEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPILLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVVPLTAEAELELAENREILKEPVHGVYYDPSKDLIAELQKQGQGQWTYQIYQEPYKNLKTGKYARMRGTHTNDIKQLTEAVQKIATESIVIWGKTPKFKLPIQKETWEAWWIEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTDKGRQKVVPLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIDKAQEEHEKYHSNWRAMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLKGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNVVKAACWWAGIKQEFGIPYNPQSQEVIESMNKELKKIIGQVRDQAEHLKTAVQMAVFVHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*", "nucleotides": "TTTTTTAGGGAAGGTCTGGCCTTCCCGCAAGGGGAGGCCAGGGAATTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACGACAACTCCCTCTCAGAAACCGGAGCCGATAGACAAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAGGAGGGCAACTAAAGGAAGCTCTATTAGACACAGGAGCAGATGATACAGTTTTAGAAGAAATGAATTTGCCAGGAAAATGGAAGCCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACTCATAGAAATCTGTGGACATAAAGCTATAGGTACAGTGTTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAAATTGGCTGCACTTTAAATTTTCCCATTAGCCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAGAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAACAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATCTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAATATTTGCCATAAAGAAGAAAGATGGTAATAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCTGCTGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATAAGGACTTCAGGAAGTATACTGCATTTACAATACCTAGCACAAACAATGAGACACCAGGGATTAGATACCAGTACAATGTGCTGCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATTTTGGAGCCTTTTAGAAAACAAAATCCAGACATAGTTATTTATCAATACATGGATGATTTATATGTAGGGTCTGACTTAGAAATAGGGCAGCATAGAGCAAAAATAGAGGAACTGAGACAACATCTATTGAAGTGGGGATTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCCGATAAATGGACAGTACAGCCTATATTGCTGCCAGAAAAAGACAGCTGGACTGTTAATGACATACAGAAGTTAGTGGGAAAATTGAACTGGGCAAGTCAGATTTACCCAGGAATCAAAGTAAGGCAGCTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAAGTGGTACCACTAACAGCAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAGATTCTAAAAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGATTTAATAGCAGAACTACAGAAGCAGGGGCAAGGCCAATGGACATATCAAATTTATCAAGAGCCATATAAAAATCTGAAAACAGGAAAGTATGCAAGAATGAGAGGTACCCACACTAATGATATAAAACAATTAACAGAGGCAGTGCAAAAAATAGCTACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAATTACCCATACAAAAGGAAACATGGGAAGCATGGTGGATAGAGTATTGGCAAGCCACCTGGATTCCTGAATGGGAGTTTGTCAATACCCCTCCCTTAGTGAAACTATGGTACCAGTTGGAAAAAGAACCCATAGTGGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGGGAAACTAAATTAGGAAAAGCAGGATATGTTACTGACAAAGGAAGACAAAAAGTTGTCCCCCTAACGGACACAACAAATCAGAAGACTGAGCTACAAGCAATTCATCTAGCTTTGCAGGATTCAGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATAAGAGTGAATCAGAACTAGTCAGTCAAATAATAGAGCAGTTAATAAAGAAGGAAAAGGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAGTTAGTCAGTGCTGGAATCAGGAAAGTACTATTTTTAGATGGAATAGATAAGGCCCAAGAAGAACATGAGAAATATCACAGTAATTGGAGAGCAATGGCTAGTGACTTTAACCTGCCACCTATAGTAGCAAAGGAAATAGTAGCCAGTTGTGACAAATGTCAGTTAAAAGGAGAAGCCATGCATGGACAAGTAGACTGTAGTCCTGGAATATGGCAGCTAGATTGTACACATCTAAAAGGAAAAATTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAAGAAACAGCATACTTTCTCTTGAAATTAGCAGGAAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTAATGTGGTTAAGGCTGCCTGTTGGTGGGCGGGGATCAAACAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGAAGTAATAGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCAGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCGTCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAATAGACATAATAGCAACAGACATACAAACCAAAGAATTACAAAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGACATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATTATCAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG" @@ -5123,7 +5123,7 @@ "subtype_start": 5040, "subtype_end": 5619, "orientation": "forward", - "distance": 0.34375, + "distance": 0.3566796368352788, "protein": "MENRWQVMIVWQVDRMRIRTWKSLVKHHMHISRKAKNWLYRHHYESIHPRISSEVHIPLGDARLVITTYWGLLTGERDWHLGQGVSIEWRERRYRTQVDPDLADQLIHLYYFDCFSESAIRNALLGRVVSPRCEYQAGHNQVGSLQYLALTALITPKRRKPPLPSVRKLTEDRWNKPQKTKGHKGSHTMNGH", "aminoacids": "MENRWQVMIVWQVDRMRIRTWKSLVKHHMHISRKAKNWLYRHHYESIHPRISSEVHIPLGDARLVITTYWGLLTGERDWHLGQGVSIEWRERRYRTQVDPDLADQLIHLYYFDCFSESAIRNALLGRVVSPRCEYQAGHNQVGSLQYLALTALITPKRRKPPLPSVRKLTEDRWNKPQKTKGHKGSHTMNGH*", "nucleotides": "ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAAGAGTTTAGTAAAACATCATATGCATATATCAAGGAAAGCTAAGAATTGGTTGTATAGACATCACTATGAAAGCATTCATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTAGTAATAACAACATATTGGGGTCTGCTTACAGGAGAAAGAGACTGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGGGAAAGGAGATATAGAACACAAGTAGACCCTGACCTAGCAGACCAACTAATTCATCTGTATTATTTTGATTGTTTTTCAGAGTCTGCTATAAGAAATGCCTTATTAGGACGTGTAGTTAGTCCTAGGTGTGAATATCAAGCAGGACATAACCAGGTAGGATCTCTACAGTACTTGGCACTAACAGCATTAATAACACCAAAAAGGAGAAAGCCACCTTTGCCTAGTGTTAGGAAACTGACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCACAAAGGGAGCCATACAATGAATGGGCACTAG" @@ -5135,7 +5135,7 @@ "subtype_start": 5558, "subtype_end": 5850, "orientation": "forward", - "distance": 0.32692307692307465, + "distance": 0.3452477660438652, "protein": "MEQAPEDQGPQREPYNEWALELLEELKSEAVRHFPRIWLHGLGQHIYETYGDTWAGVEAIIRILQQLLFIHFRIGCRHSRIGINLQRRARNGSSRS", "aminoacids": "MEQAPEDQGPQREPYNEWALELLEELKSEAVRHFPRIWLHGLGQHIYETYGDTWAGVEAIIRILQQLLFIHFRIGCRHSRIGINLQRRARNGSSRS*P", "nucleotides": "ATGGAACAAGCCCCAGAAGACCAAGGGCCACAAAGGGAGCCATACAATGAATGGGCACTAGAACTTTTAGAGGAACTTAAAAGTGAAGCTGTTAGACATTTTCCTAGGATATGGCTTCATGGATTGGGACAGCATATCTATGAAACATATGGGGATACTTGGGCAGGAGTGGAAGCCATAATAAGAATTCTGCAACAACTGCTGTTTATTCATTTCAGAATTGGATGTCGACATAGCAGAATAGGCATTAATCTACAGAGGAGAGCAAGGAATGGATCCAGTAGATCCTAGCCT" @@ -5147,7 +5147,7 @@ "subtype_start": 5830, "subtype_end": 6045, "orientation": "forward", - "distance": 0.41666666666666674, + "distance": 0.40192926045016075, "protein": "MDPVDPSLEPWKHPGSQPKTACTNCYCKKCCFHCQVCFIKKGLGISYGRKKRRQRRRASQGSETHQVSLPKQ", "aminoacids": "MDPVDPSLEPWKHPGSQPKTACTNCYCKKCCFHCQVCFIKKGLGISYGRKKRRQRRRASQGSETHQVSLPKQ*", "nucleotides": "ATGGATCCAGTAGATCCTAGCCTAGAGCCCTGGAAGCATCCAGGAAGTCAGCCTAAGACTGCTTGTACCAATTGTTATTGTAAAAAGTGCTGCTTTCATTGCCAAGTTTGTTTCATAAAAAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTTCTCAAGGCAGTGAGACTCATCAAGTTTCTCTACCAAAGCAGTAA" @@ -5159,7 +5159,7 @@ "subtype_start": 5969, "subtype_end": 6045, "orientation": "forward", - "distance": 0.5769230769230769, + "distance": 0.48200514138817474, "protein": "MAGRSGDSDEELLKAVRLIKFLYQSS", "aminoacids": "MAGRSGDSDEELLKAVRLIKFLYQSS", "nucleotides": "ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTTCTCAAGGCAGTGAGACTCATCAAGTTTCTCTACCAAAGCAGT" @@ -5171,7 +5171,7 @@ "subtype_start": 6061, "subtype_end": 6310, "orientation": "forward", - "distance": 0.7073170731707319, + "distance": 0.5328923190003676, "protein": "MRPLEIAAIVALVVAVLIAIVVWSIVLIEYRKILRQRKIDRIVDRIRERAEDSGNESEGDQEELSALVERGHLAPWDIDDL", "aminoacids": "MRPLEIAAIVALVVAVLIAIVVWSIVLIEYRKILRQRKIDRIVDRIRERAEDSGNESEGDQEELSALVERGHLAPWDIDDL*", "nucleotides": "ATGCGACCTTTAGAAATAGCAGCAATAGTAGCACTAGTAGTAGCAGTACTAATAGCAATAGTTGTGTGGTCTATAGTACTCATAGAATATAGGAAAATATTAAGACAAAGAAAAATAGACAGGATAGTGGATAGAATAAGAGAAAGAGCAGAAGATAGTGGAAATGAGAGTGAAGGGGATCAGGAGGAATTATCAGCACTGGTGGAGAGGGGGCACCTTGCTCCTTGGGATATTGATGATCTGTAG" @@ -5183,7 +5183,7 @@ "subtype_start": 6224, "subtype_end": 8795, "orientation": "forward", - "distance": 0.5698598130841122, + "distance": 0.47893021246514556, "protein": "MRVKGIRRNYQHWWRGGTLLLGILMICSATENLWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPSPQEVVLKNVTEKFNMWKNNMVEQMHQDIISLWDESLKPCVKLTPLCVTLNCTNATISGNATEEIKNCSFNVNTKIGGKKQKERALFYKLDVVPIDDDSTNRTNTSYRLISCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCGDKEFNGTGLCRNVSTVQCTHGIRPVVSTQLLLNGSLAEGEVVIKSENITNNVKTIIVQLNETVSINCTRPSNNTRRSIHMGPGRAFYATGEIIGDIRKAQCILNKTDWSDTLTRIAKKLHKQFHGPIAFEQSSGGDPEITMHTFNCGGEFFYCNTSALFSGTWNGTAWTNATWGNIAGNNITLQCRIKQFINRWQEVGKAMYAPPIRGEIRCSSNITGLLLTRDGGSNTTNGGENGTQIGENVTQIFRPGGGDMRDNWRSELYKYKVVKIEPLGIAPTKAKRRVVQREKRAVTFGALFLGFLGAAGSTMGAASMTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARILAVERYLRDQQLLGIWGCSGKLICTTTVPWNASWSNKTLEKIWGNMTWMEWEREIDNYTDLIYTLIEQSQNQQEKNEQELLELDKWAGLWNWFDITNWLWYIKIFIMIVGGLVGLRIVFAVLSIVNRVRQGYSPLSFQTRLPASRGPDRPEGTDEEGGERDRDRSGSLVNGFLALIWIDLRSLFLFSYLRLRDLLLIAARIVELLGRRGWEALKYWWNLLQYWSQELKNSAVSLLNAIAISVAEGTDRIIEAIQRICRAILHIPTRIRQGLERALL", "aminoacids": "MRVKGIRRNYQHWWRGGTLLLGILMICSATENLWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPSPQEVVLKNVTEKFNMWKNNMVEQMHQDIISLWDESLKPCVKLTPLCVTLNCTNATISGNATEEIKNCSFNVNTKIGGKKQKERALFYKLDVVPIDDDSTNRTNTSYRLISCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCGDKEFNGTGLCRNVSTVQCTHGIRPVVSTQLLLNGSLAEGEVVIKSENITNNVKTIIVQLNETVSINCTRPSNNTRRSIHMGPGRAFYATGEIIGDIRKAQCILNKTDWSDTLTRIAKKLHKQFHGPIAFEQSSGGDPEITMHTFNCGGEFFYCNTSALFSGTWNGTAWTNATWGNIAGNNITLQCRIKQFINRWQEVGKAMYAPPIRGEIRCSSNITGLLLTRDGGSNTTNGGENGTQIGENVTQIFRPGGGDMRDNWRSELYKYKVVKIEPLGIAPTKAKRRVVQREKRAVTFGALFLGFLGAAGSTMGAASMTLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARILAVERYLRDQQLLGIWGCSGKLICTTTVPWNASWSNKTLEKIWGNMTWMEWEREIDNYTDLIYTLIEQSQNQQEKNEQELLELDKWAGLWNWFDITNWLWYIKIFIMIVGGLVGLRIVFAVLSIVNRVRQGYSPLSFQTRLPASRGPDRPEGTDEEGGERDRDRSGSLVNGFLALIWIDLRSLFLFSYLRLRDLLLIAARIVELLGRRGWEALKYWWNLLQYWSQELKNSAVSLLNAIAISVAEGTDRIIEAIQRICRAILHIPTRIRQGLERALL*DGWQGVKNEGMGCCKGKNEAN*", "nucleotides": "ATGAGAGTGAAGGGGATCAGGAGGAATTATCAGCACTGGTGGAGAGGGGGCACCTTGCTCCTTGGGATATTGATGATCTGTAGTGCCACAGAGAACTTGTGGGTCACAGTCTACTATGGGGTACCTGTGTGGAAAGAAGCAACCACCACTTTATTTTGTGCATCAGATGCCAAAGCATATGATACAGAGGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAGCCCACAAGAAGTAGTATTGAAAAATGTGACAGAAAAGTTTAATATGTGGAAAAATAACATGGTAGAACAGATGCATCAGGATATAATCAGTTTATGGGATGAAAGCCTAAAACCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCACTAATGCTACTATCAGTGGTAATGCAACAGAAGAAATAAAAAACTGCTCTTTCAATGTCAATACAAAAATAGGAGGTAAGAAGCAGAAAGAACGTGCACTTTTTTATAAACTTGATGTAGTACCAATAGATGATGATAGTACTAATAGGACTAATACCAGCTATAGGTTGATAAGTTGTAACACTTCAGTCATTACACAAGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTGGAGATAAAGAGTTCAATGGAACAGGACTATGTAGAAATGTCAGCACAGTCCAATGTACACATGGAATCAGGCCAGTAGTATCAACTCAATTGCTGTTGAATGGCAGTCTAGCAGAAGGAGAGGTAGTAATTAAATCTGAAAATATCACGAACAATGTTAAAACCATAATAGTACAGCTAAATGAAACTGTATCAATTAATTGTACAAGACCTAGCAACAATACAAGAAGAAGCATACATATGGGACCAGGGAGAGCCTTTTATGCAACAGGAGAAATAATAGGAGATATAAGGAAAGCACAGTGTATCCTGAATAAGACAGACTGGAGTGACACTTTAACAAGGATAGCTAAAAAATTACACAAGCAATTTCATGGACCAATAGCATTTGAGCAATCCTCAGGAGGGGACCCTGAAATTACAATGCACACTTTTAATTGTGGAGGGGAATTTTTCTACTGCAACACATCAGCGTTGTTTAGCGGGACCTGGAATGGTACTGCTTGGACTAATGCTACTTGGGGTAATATTGCAGGTAACAATATCACACTCCAATGCAGAATAAAACAATTTATAAACAGATGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCATCAGAGGAGAAATTAGATGTTCATCAAATATTACAGGGCTGCTATTAACAAGAGATGGTGGCAGTAACACAACAAATGGTGGCGAGAATGGGACCCAGATTGGCGAGAATGTGACCCAGATCTTCAGACCTGGAGGAGGGGATATGAGGGACAATTGGAGAAGTGAATTATACAAATATAAAGTAGTAAAAATTGAGCCATTAGGAATAGCACCCACCAAGGCAAAAAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTAACATTCGGAGCTTTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAATGACACTGACGGTACAGGCCAGACTATTATTGTCTGGTATAGTGCAACAGCAGAACAATCTGCTGAGAGCTATTGAGGCGCAACAACATCTGTTGCAACTCACAGTCTGGGGCATCAAACAGCTTCAGGCAAGAATCCTGGCTGTGGAAAGATACCTAAGGGATCAACAGCTCCTAGGGATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTACTGTGCCTTGGAATGCTAGTTGGAGTAATAAAACTCTGGAAAAAATTTGGGGGAACATGACCTGGATGGAGTGGGAGAGAGAAATTGACAATTATACAGACTTAATATACACCTTAATTGAACAATCGCAGAACCAACAAGAAAAGAATGAACAAGAATTATTGGAATTGGATAAATGGGCAGGCTTGTGGAATTGGTTTGACATAACAAACTGGCTGTGGTATATAAAAATATTCATAATGATAGTAGGAGGTTTAGTAGGTTTAAGAATAGTTTTTGCTGTGCTTTCTATAGTAAATAGAGTTAGGCAGGGATACTCACCATTATCATTCCAGACCCGCCTCCCAGCCTCGAGGGGACCCGACAGGCCCGAAGGAACCGACGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGGATCATTAGTGAACGGATTCTTAGCACTCATCTGGATCGACCTGCGGAGTCTGTTCCTCTTCAGCTACCTCCGCTTGAGAGACTTACTCTTGATTGCAGCGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAGGCCCTCAAATATTGGTGGAATCTCCTGCAGTATTGGAGTCAGGAACTAAAGAATAGTGCTGTTAGTTTGCTTAATGCTATAGCTATATCAGTAGCGGAGGGAACAGATAGGATTATAGAAGCAATACAAAGAATTTGTAGAGCTATCTTACACATACCTACAAGGATAAGACAGGGCTTAGAAAGGGCTTTGCTATAAGATGGGTGGCAAGGGGTCAAAAATGAGGGGATGGGTTGCTGTAAGGGAAAAAATGAGGCGAACTAA" @@ -5195,7 +5195,7 @@ "subtype_start": 8376, "subtype_end": 8469, "orientation": "forward", - "distance": 0.4866666666666659, + "distance": 0.439759036144578, "protein": "RPASQPRGDPTGPKEPTKKVERETETDPDH", "aminoacids": "RPASQPRGDPTGPKEPTKKVERETETDPDH**", "nucleotides": "AGACCCGCCTCCCAGCCTCGAGGGGACCCGACAGGCCCGAAGGAACCGACGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGGATCATTAGTGA" @@ -5207,7 +5207,7 @@ "subtype_start": 8377, "subtype_end": 8653, "orientation": "forward", - "distance": 0.39560439560439553, + "distance": 0.38952607660679506, "protein": "DPPPSLEGTRQARRNRRRRWRERQRQIRIISERILSTHLDRPAESVPLQLPPLERLTLDCSEDCGTSGTQGVGGPQILVESPAVLESGTKE", "aminoacids": "DPPPSLEGTRQARRNRRRRWRERQRQIRIISERILSTHLDRPAESVPLQLPPLERLTLDCSEDCGTSGTQGVGGPQILVESPAVLESGTKE*", "nucleotides": "GACCCGCCTCCCAGCCTCGAGGGGACCCGACAGGCCCGAAGGAACCGACGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGGATCATTAGTGAACGGATTCTTAGCACTCATCTGGATCGACCTGCGGAGTCTGTTCCTCTTCAGCTACCTCCGCTTGAGAGACTTACTCTTGATTGCAGCGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAGGCCCTCAAATATTGGTGGAATCTCCTGCAGTATTGGAGTCAGGAACTAAAGAATAG" @@ -5219,7 +5219,7 @@ "subtype_start": 8796, "subtype_end": 9417, "orientation": "forward", - "distance": 0.7422764227642202, + "distance": 0.5448794461685341, "protein": "MGGKGSKMRGWVAVREKMRRTKPEDEPAANGVGAASRDLEKYGALTSSNTVATNADLAWLEAQEEEEVGFPVRPQVPLRPMTYKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVHHTQGYLPDWQNYTPGPGIRYPLTFGWCFKLVPVEPDQVEEANAGENNSLLHPMSLHGIEDPEKEVLMWKFDSHLAFRHMARELHPEYYKDC", "aminoacids": "MGGKGSKMRGWVAVREKMRRTKPEDEPAANGVGAASRDLEKYGALTSSNTVATNADLAWLEAQEEEEVGFPVRPQVPLRPMTYKGALDLSHFLKEKGGLEGLIYSQKRQDILDLWVHHTQGYLPDWQNYTPGPGIRYPLTFGWCFKLVPVEPDQVEEANAGENNSLLHPMSLHGIEDPEKEVLMWKFDSHLAFRHMARELHPEYYKDC*", "nucleotides": "ATGGGTGGCAAGGGGTCAAAAATGAGGGGATGGGTTGCTGTAAGGGAAAAAATGAGGCGAACTAAGCCAGAAGATGAGCCAGCAGCAAATGGGGTGGGGGCAGCATCTCGAGACTTGGAGAAATATGGCGCACTCACAAGTAGCAATACAGTAGCTACTAATGCTGATTTAGCTTGGCTAGAAGCACAAGAGGAAGAGGAGGTGGGCTTTCCAGTCAGACCTCAAGTACCTTTAAGACCAATGACTTACAAGGGAGCTCTAGATCTCAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCCCAAAAAAGGCAAGATATCCTTGATCTGTGGGTTCACCACACACAAGGCTATCTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGATCAGATATCCCCTGACTTTTGGATGGTGCTTCAAGCTAGTACCAGTTGAGCCAGATCAGGTAGAAGAGGCCAATGCAGGAGAGAACAACAGCTTGTTACACCCTATGAGCCTGCATGGGATAGAGGACCCGGAGAAAGAAGTCTTAATGTGGAAGTTTGACAGCCACCTAGCATTCCGTCACATGGCCCGAGAGCTGCATCCGGAGTATTACAAAGACTGCTGA" @@ -5233,7 +5233,7 @@ "subtype_start": 200, "subtype_end": 1700, "orientation": "forward", - "distance": 0.38588709677419364, + "distance": 0.3836286378577728, "protein": "MGARASVLSGGELDRWERIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSKGCRQILEQLQPALQTGSEELKSLYNTVATLYCVHQKIDVKDTKEALDKIEEEQNKSKKKAQQAAADTGNNSQASQNYPIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQCTQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTTPGTIMMQRGNLRSQRKTVKCFNCGKEGHIAKNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETTTPSQKQEPIDKEMYPLASLRSLFGNDPSSQ", "aminoacids": "MGARASVLSGGELDRWERIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSKGCRQILEQLQPALQTGSEELKSLYNTVATLYCVHQKIDVKDTKEALDKIEEEQNKSKKKAQQAAADTGNNSQASQNYPIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQCTQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTTPGTIMMQRGNLRSQRKTVKCFNCGKEGHIAKNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETTTPSQKQEPIDKEMYPLASLRSLFGNDPSSQ*R*", "nucleotides": "ATGGGTGCGAGAGCGTCGGTATTAAGCGGGGGAGAATTAGATAGATGGGAAAGAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAAATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGGTTCGCAGTTAATCCTGGCCTGTTAGAAACATCAAAAGGCTGTAGACAAATATTGGAACAGCTACAGCCAGCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATATAATACAGTAGCAACCCTCTATTGTGTGCATCAAAAGATCGATGTAAAAGACACCAAGGAAGCTTTAGATAAGATAGAGGAAGAGCAAAACAAAAGTAAGAAAAAAGCACAGCAAGCAGCAGCTGACACAGGAAACAACAGCCAGGCCAGCCAAAATTACCCTATAGTGCAGAACATTCAGGGGCAAATGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCGCTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGGATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGGATGTATAGCCCTACCAGCATTCTGGACATAAGACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAAAACTCTAAGAGCCGAACAATGTACACAGGAGGTAAAAAATTGGATGACAGAAACATTATTGGTCCAAAATGCAAACCCAGATTGCAAGACTATTTTAAAAGCATTAGGACCAGCAGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCTGGCCATAAAGCAAGAGTTTTGGCAGAAGCAATGAGCCAAGTAACAACTCCAGGTACCATAATGATGCAGAGAGGCAATTTAAGGAGCCAAAGAAAGACTGTTAAGTGTTTCAACTGTGGCAAAGAAGGGCATATAGCTAAAAATTGCAGGGCTCCTAGGAAAAGGGGCTGTTGGAAATGTGGAAAAGAAGGACACCAAATGAAAGATTGCACTGAGAGACAGGCTAATTTTTTAGGGAAGATCTGGCCTTCCCACAAGGGGAGGCCAGGGAATTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAACAACTCCCTCTCAGAAGCAGGAGCCGATAGACAAAGAAATGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAG" @@ -5245,7 +5245,7 @@ "subtype_start": 1492, "subtype_end": 4504, "orientation": "forward", - "distance": 0.1734795613160518, + "distance": 0.21863141758600757, "protein": "FFREDLAFPQGEAREFSSEQTRANSPTRRELQVWGRDNNSLSEAGADRQRNVSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMTLPGRWKPKMIGGIGGFIKVRQYDQILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTEVIPLTREAELELAENREILKEPVHGVYYDPTKDLIVEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFRLPIQRETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKDKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIDKAQDDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGGNFISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVYIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED", "aminoacids": "FFREDLAFPQGEAREFSSEQTRANSPTRRELQVWGRDNNSLSEAGADRQRNVSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMTLPGRWKPKMIGGIGGFIKVRQYDQILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGTKALTEVIPLTREAELELAENREILKEPVHGVYYDPTKDLIVEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFRLPIQRETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKDKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIDKAQDDHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGGNFISTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVYIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKLQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*", "nucleotides": "TTTTTTAGGGAAGATCTGGCCTTCCCACAAGGGGAGGCCAGGGAATTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAACAACTCCCTCTCAGAAGCAGGAGCCGATAGACAAAGAAATGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGACATGACTTTACCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACTCGTAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTAACTCAGATTGGTTGCACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATCTGTACAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATATAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCCGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATAAAGACTTCAGGAAGTATACTGCATTTACCATACCTAGTATAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGACATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAATTAAGACAACATCTGTTGAAGTGGGGATTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGATATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAGAAAAGGACAGTTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTGAATTGGGCAAGTCAGATTTACCCAGGGATTAAAGTAAAGCAATTATGTAAACTCCTTAGGGGAACCAAGGCACTAACAGAAGTAATACCACTAACAAGAGAAGCAGAGCTAGAACTGGCAGAGAACAGGGAAATTCTAAAAGAACCAGTACATGGAGTGTATTATGACCCAACAAAAGACTTAATAGTAGAAATACAGAAGCAGGGGCAAGGCCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGAGGTGCCCACACTAATGATGTAAAACAACTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAGTTTAGACTACCCATACAAAGAGAAACATGGGAAACATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAGACTTTCTATGTAGATGGTGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAACAGAGGAAGACAAAAAGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAGTTACAAGCAATTCATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATAAAAGTGAATCAGAGTTAGTTAATCAAATAATAGAACAGTTAATAAAAAAGGACAAGGTATACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTGCTGGAATCAGGAAAGTACTATTTTTAGATGGAATAGATAAGGCCCAAGACGATCATGAGAAATATCACAGTAATTGGAGAGCAATGGCTAGTGACTTTAACCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGCCAGTTAAAAGGGGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAACTAGATTGTACACACTTAGAAGGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTCTCTTAAAATTAGCAGGAAGATGGCCAGTAAAAACAATACATACAGACAATGGCGGCAATTTCATCAGTACTACAGTTAAGGCCGCCTGCTGGTGGGCGGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATACATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAGAGAATAGTAGACATAATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATTACAAAACTTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGACCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGACATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG" @@ -5257,7 +5257,7 @@ "subtype_start": 4448, "subtype_end": 5027, "orientation": "forward", - "distance": 0.29166666666666674, + "distance": 0.31992687385740404, "protein": "MENRWQVMIVWQVDRMRIRTWKSLVKHHMYISRKAKGWVYKHHYDSTHPRISSEVHIPLGDAKLVITTYWGLHTGERDWHLGQGVSIEWRKKRYSTQVDPGLADQLIHLYYFDCFSESAIRNAILGHIVSPSCDYQAGHNKVGSLQYLALAALITPKKIKPPLPSVKKLTEDRWNKPQKTKGHRGSHTMNGH", "aminoacids": "MENRWQVMIVWQVDRMRIRTWKSLVKHHMYISRKAKGWVYKHHYDSTHPRISSEVHIPLGDAKLVITTYWGLHTGERDWHLGQGVSIEWRKKRYSTQVDPGLADQLIHLYYFDCFSESAIRNAILGHIVSPSCDYQAGHNKVGSLQYLALAALITPKKIKPPLPSVKKLTEDRWNKPQKTKGHRGSHTMNGH*", "nucleotides": "ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGGACATGGAAAAGTTTAGTAAAACACCATATGTATATTTCAAGGAAAGCTAAGGGATGGGTTTATAAGCATCACTATGACAGTACTCATCCAAGAATAAGTTCAGAAGTTCACATCCCGCTAGGGGATGCGAAATTGGTAATAACAACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGGAAGAAGAGATATAGCACACAAGTAGACCCTGGCTTAGCAGACCAACTAATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACATATAGTTAGTCCTAGCTGTGATTATCAAGCAGGACATAACAAGGTAGGATCTCTACAGTACTTGGCACTAGCAGCATTAATAACACCAAAAAAGATAAAGCCACCTTTGCCTAGTGTTAAGAAACTGACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACACTAG" @@ -5269,7 +5269,7 @@ "subtype_start": 4966, "subtype_end": 5257, "orientation": "forward", - "distance": 0.20833333333333326, + "distance": 0.2515090543259557, "protein": "MEQAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHSLGQHIYETYGDTWAGVEAIIRILQQLLFIHFRIGCRHSRIGIIQRRRARNGASRS", "aminoacids": "MEQAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRPWLHSLGQHIYETYGDTWAGVEAIIRILQQLLFIHFRIGCRHSRIGIIQRRRARNGASRS*", "nucleotides": "ATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACACTAGAGCTTTTAGAGGAGCTTAAGAATGAAGCTGTTAGACACTTTCCTAGGCCATGGCTCCACAGCTTAGGGCAACATATCTATGAAACATATGGAGATACTTGGGCAGGAGTGGAAGCCATAATAAGAATTCTGCAACAACTGCTGTTTATTCATTTCAGAATTGGGTGTCGACATAGCAGAATAGGCATCATTCAACGGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAG" @@ -5281,7 +5281,7 @@ "subtype_start": 5237, "subtype_end": 5452, "orientation": "forward", - "distance": 0.25, + "distance": 0.28735632183908044, "protein": "MEPVDPRLEPWKHPGSQPRTACTSCYCKQCCFHCQVCFITKGLGISYGRKKRRQRRRAPPDSQTHQASLSKQ", "aminoacids": "MEPVDPRLEPWKHPGSQPRTACTSCYCKQCCFHCQVCFITKGLGISYGRKKRRQRRRAPPDSQTHQASLSKQ*", "nucleotides": "ATGGAGCCAGTAGATCCTAGATTAGAGCCCTGGAAGCATCCAGGAAGTCAGCCTAGGACTGCTTGTACCTCTTGTTATTGTAAGCAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAACAAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCCAGACAGTCAGACTCATCAAGCTTCTCTATCAAAGCAGTAA" @@ -5293,7 +5293,7 @@ "subtype_start": 5376, "subtype_end": 5452, "orientation": "forward", - "distance": 0.5769230769230769, + "distance": 0.48200514138817474, "protein": "MAGRSGDSDEELLQTVRLIKLLYQSS", "aminoacids": "MAGRSGDSDEELLQTVRLIKLLYQSS", "nucleotides": "ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCCTCCAGACAGTCAGACTCATCAAGCTTCTCTATCAAAGCAGT" @@ -5305,7 +5305,7 @@ "subtype_start": 5468, "subtype_end": 5708, "orientation": "forward", - "distance": 0.4265822784810127, + "distance": 0.4075955491049832, "protein": "MQPLHIAAIVALVVAIIIAIVVWSIVFIEYRKILRQRKIDRIIDRIRERAEDSGNESEGDQEELSALVEMGHCAPWDVNDL", "aminoacids": "MQPLHIAAIVALVVAIIIAIVVWSIVFIEYRKILRQRKIDRIIDRIRERAEDSGNESEGDQEELSALVEMGHCAPWDVNDL*", "nucleotides": "ATGCAACCTTTACACATAGCAGCAATAGTAGCATTAGTAGTAGCAATAATAATAGCAATAGTTGTGTGGTCTATAGTATTCATAGAATATAGGAAAATATTAAGACAAAGGAAAATAGACAGGATAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAGGGGGATCAAGAAGAATTATCAGCACTTGTGGAGATGGGGCATTGTGCTCCTTGGGATGTTAATGATCTGTAG" @@ -5317,7 +5317,7 @@ "subtype_start": 5631, "subtype_end": 8208, "orientation": "forward", - "distance": 0.5058275058275068, + "distance": 0.4492939666238772, "protein": "MRVRGIKKNYQHLWRWGIVLLGMLMICSATEKLWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVVLGNVTENFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTNYNNTNNTTSTNDTTSTTTSSGEKMKEGEIKNCSFNITTSIRDKVQKEYALFYKPDIVPIDNDNTSYRLISCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGSCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSENFSDNAKTIIVHLNESVEITCIRPNNNTRKSIPIGPGRAFYATGAIIGDIRQAHCKINKTKWNNTLDQIFKKLREQFGNKTIIFTHSSGGDPEVVTHNFNCGGEFFYCNTTKLFNSTWNETSYWKDERSNDNDTITLPCRIKQIINLWQEVGKAMYAPPIRGYIKCSSNITGLLITRDGGKNESNTTETFRPGGGNMRDNWRSELYKYKVVKIEPLGIAPTKAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASITLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKSLEQIWDNMTWMEWEREIDNYTSLIYTLIEKSQNQQEKNEQELLELDKWASLWNWFDITKWLWYIKIFIMIVGGLVGLRIVFAVLSIANRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSGPLVNGFLTIIWVDLRSLCLFSYHRLRDLLLIVTRIVELLGRRGWELLKYWWNLLQYWSQELKNSAISLLNATAIAVAEGTDRIIEVLQRAGRAFLHIPRRIRQGLERALL", "aminoacids": "MRVRGIKKNYQHLWRWGIVLLGMLMICSATEKLWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVVLGNVTENFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTNYNNTNNTTSTNDTTSTTTSSGEKMKEGEIKNCSFNITTSIRDKVQKEYALFYKPDIVPIDNDNTSYRLISCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGSCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSENFSDNAKTIIVHLNESVEITCIRPNNNTRKSIPIGPGRAFYATGAIIGDIRQAHCKINKTKWNNTLDQIFKKLREQFGNKTIIFTHSSGGDPEVVTHNFNCGGEFFYCNTTKLFNSTWNETSYWKDERSNDNDTITLPCRIKQIINLWQEVGKAMYAPPIRGYIKCSSNITGLLITRDGGKNESNTTETFRPGGGNMRDNWRSELYKYKVVKIEPLGIAPTKAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASITLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKSLEQIWDNMTWMEWEREIDNYTSLIYTLIEKSQNQQEKNEQELLELDKWASLWNWFDITKWLWYIKIFIMIVGGLVGLRIVFAVLSIANRVRQGYSPLSFQTHLPAPRGPDRPEGIEEEGGERDRDRSGPLVNGFLTIIWVDLRSLCLFSYHRLRDLLLIVTRIVELLGRRGWELLKYWWNLLQYWSQELKNSAISLLNATAIAVAEGTDRIIEVLQRAGRAFLHIPRRIRQGLERALL*", "nucleotides": "ATGAGAGTGAGGGGGATCAAGAAGAATTATCAGCACTTGTGGAGATGGGGCATTGTGCTCCTTGGGATGTTAATGATCTGTAGTGCTACAGAAAAATTGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAAAGAAGCAACTACCACTCTATTTTGTGCATCAGATGCTAAAGCATATGATACAGAGGTACATAATGTTTGGGCTACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGTATTGGGAAATGTGACAGAGAATTTTAACATGTGGAAAAATGACATGGTAGAACAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGTCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTGAATTGCACTAATTATAATAACACCAATAATACCACTAGTACCAATGATACCACTAGTACCACTACTAGTAGCGGGGAAAAGATGAAGGAAGGAGAGATAAAAAACTGCTCTTTCAATATCACCACAAGCATAAGAGATAAGGTGCAGAAAGAATATGCACTCTTTTATAAACCTGATATAGTACCAATAGATAATGATAATACTAGTTATAGGTTGATAAGTTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTATTGTGCCCCAGCTGGTTTTGCGATTCTAAAGTGTAACGATAAGAAGTTCAATGGAACAGGATCATGTACAAATGTCAGCACAGTACAATGTACACATGGAATTAGGCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTCTAGCAGAAGAAGAGGTAGTAATTAGATCTGAAAATTTCTCAGACAATGCTAAAACCATAATAGTACATCTGAATGAATCTGTAGAAATTACTTGTATAAGACCCAACAACAATACAAGAAAAAGTATACCTATAGGACCAGGGAGAGCATTTTATGCAACAGGAGCCATAATAGGAGATATAAGACAAGCACATTGTAAAATTAATAAAACGAAATGGAATAACACTTTAGACCAGATATTTAAAAAGTTAAGAGAACAATTTGGGAATAAGACAATAATCTTTACTCACTCCTCAGGAGGGGACCCAGAAGTTGTAACGCACAATTTTAATTGTGGAGGGGAATTTTTCTACTGTAATACAACAAAACTGTTTAATAGTACTTGGAATGAGACTAGTTATTGGAAGGATGAAAGGTCAAATGACAATGACACTATCACACTCCCATGCAGAATAAAGCAAATTATAAACCTGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCATTAGAGGATACATTAAATGTTCATCAAATATCACAGGGCTGCTAATAACAAGAGATGGTGGGAAAAACGAGAGCAACACCACCGAGACCTTCAGACCTGGAGGAGGAAATATGAGGGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAAAATTGAACCATTAGGAATAGCACCCACCAAGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAATAACGCTGACGGTACAGGCCAGACTATTATTGTCTGGTATAGTGCAACAGCAAAACAATCTGCTGAGGGCTATTGAGGCGCAACAGCATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTAAAGGATCAACAGCTCCTGGGAATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCTTGGAATGCTAGTTGGAGTAATAAATCTCTGGAACAGATTTGGGATAACATGACCTGGATGGAATGGGAAAGAGAAATTGACAATTACACAAGCTTAATATACACTTTAATTGAAAAATCGCAAAACCAACAAGAAAAGAATGAACAAGAATTATTGGAATTAGATAAATGGGCAAGTTTGTGGAATTGGTTTGACATAACAAAGTGGCTGTGGTATATAAAAATATTCATAATGATAGTAGGAGGCTTGGTAGGTTTAAGAATAGTTTTTGCTGTACTTTCTATAGCGAATAGAGTTAGGCAGGGATACTCACCATTATCGTTTCAGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCAGAAGGAATCGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGGACCATTAGTGAACGGATTCTTAACAATTATCTGGGTCGACCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAACTCCTCAAATATTGGTGGAATCTCCTGCAGTATTGGAGTCAGGAACTAAAGAATAGTGCTATTAGCTTGCTTAATGCCACAGCCATAGCAGTAGCTGAGGGGACAGATAGGATTATAGAAGTATTACAAAGAGCTGGGAGAGCTTTTCTCCACATACCTAGAAGAATAAGACAGGGCTTAGAAAGGGCTTTGCTATAA" @@ -5329,7 +5329,7 @@ "subtype_start": 7789, "subtype_end": 7882, "orientation": "forward", - "distance": 3.5, + "distance": 0.8495145631067962, "protein": "RPTSQPRGDPTGQKESKKKVERETETDPDH", "aminoacids": "RPTSQPRGDPTGQKESKKKVERETETDPDH**", "nucleotides": "AGACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCAGAAGGAATCGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGGACCATTAGTGA" @@ -5341,7 +5341,7 @@ "subtype_start": 7790, "subtype_end": 8066, "orientation": "forward", - "distance": 0.3846153846153846, + "distance": 0.38284839203675347, "protein": "DPPPSPEGTRQARRNRRRRWRERQRQIRTISERILNNYLGRPAEPVPLQLPPLERLTLDCNEDCGTSGTQGVGTPQILVESPAVLESGTKE", "aminoacids": "DPPPSPEGTRQARRNRRRRWRERQRQIRTISERILNNYLGRPAEPVPLQLPPLERLTLDCNEDCGTSGTQGVGTPQILVESPAVLESGTKE*", "nucleotides": "GACCCACCTCCCAGCCCCGAGGGGACCCGACAGGCCAGAAGGAATCGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGGACCATTAGTGAACGGATTCTTAACAATTATCTGGGTCGACCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAACTCCTCAAATATTGGTGGAATCTCCTGCAGTATTGGAGTCAGGAACTAAAGAATAG" @@ -5353,7 +5353,7 @@ "subtype_start": 8209, "subtype_end": 8842, "orientation": "forward", - "distance": 0.3542857142857141, + "distance": 0.36363636363636354, "protein": "MGGKWSKSSVVGWPAIRERMRRAEPAADGVGAASRDLEKHGAITSSNTAATNADCAWLEAQEDEEVGFPVRPQVPLRPMTYKGAVDLSHFLKEKGGLEGLIHSQKRQDILDLWVYHTQGYFPDWQNYTPGPGIRYPLTFGWCFKLVPVEPDKVEEANEGENNSLLHPMSLHGMDDPEKEVLVWRFDSRLAFHHMARELHPEYYKDC", "aminoacids": "MGGKWSKSSVVGWPAIRERMRRAEPAADGVGAASRDLEKHGAITSSNTAATNADCAWLEAQEDEEVGFPVRPQVPLRPMTYKGAVDLSHFLKEKGGLEGLIHSQKRQDILDLWVYHTQGYFPDWQNYTPGPGIRYPLTFGWCFKLVPVEPDKVEEANEGENNSLLHPMSLHGMDDPEKEVLVWRFDSRLAFHHMARELHPEYYKDC*", "nucleotides": "ATGGGTGGTAAGTGGTCAAAGAGTAGTGTGGTTGGATGGCCTGCTATAAGGGAAAGAATGAGACGAGCTGAGCCAGCAGCAGATGGGGTGGGAGCAGCATCTCGAGACCTGGAAAAACATGGAGCAATCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGTGCCTGGCTAGAAGCACAAGAGGATGAGGAGGTGGGTTTTCCAGTCAGGCCTCAGGTACCTTTAAGACCAATGACTTACAAGGGAGCTGTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCACTCCCAAAAAAGACAAGATATCCTTGATCTGTGGGTCTACCACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGATCAGGTATCCACTGACCTTTGGATGGTGCTTCAAGCTAGTACCAGTTGAGCCAGATAAGGTAGAAGAGGCCAATGAAGGAGAGAACAACAGCTTGTTACACCCTATGAGCCTGCATGGGATGGATGACCCAGAGAAAGAAGTGTTAGTATGGAGGTTTGACAGTCGCCTGGCATTTCATCACATGGCCCGAGAGCTGCATCCGGAGTACTACAAGGACTGCTGA" @@ -5367,7 +5367,7 @@ "subtype_start": 789, "subtype_end": 2292, "orientation": "forward", - "distance": 0.24380000000000002, + "distance": 0.2822412595508219, "protein": "MGARASVLSGGELDKWEKIRLRPGGKKQYKLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPALQTGSEEFRSLYNTVATLYCVHQKIEVKDTKEALEKIEEEQNQSKKKAAAAAADTGNRSQVSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVIEEKAFSPEVIPMFTALSEGATPQDLNTMLNTIGGHQAAMQMLKETINEEAAEWDRLHPVQAGPVAPGQMREPRGSDIAGTTSNLQEQIGWMTHNPPIPVGDIYKRWIILGLNKIVRMYSPVSILDIKQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSTVMMQRGNFRNQRKTVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSKPEPTAPPEESFRFGEETTTPSQKQGPIDKELYPLASLKSLFGNDPSSQ", "aminoacids": "MGARASVLSGGELDKWEKIRLRPGGKKQYKLKHLVWASRELERFAVNPGLLETSEGCRQILGQLQPALQTGSEEFRSLYNTVATLYCVHQKIEVKDTKEALEKIEEEQNQSKKKAAAAAADTGNRSQVSQNYPIVQNLQGQMVHQPLSPRTLNAWVKVIEEKAFSPEVIPMFTALSEGATPQDLNTMLNTIGGHQAAMQMLKETINEEAAEWDRLHPVQAGPVAPGQMREPRGSDIAGTTSNLQEQIGWMTHNPPIPVGDIYKRWIILGLNKIVRMYSPVSILDIKQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSTVMMQRGNFRNQRKTVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSKPEPTAPPEESFRFGEETTTPSQKQGPIDKELYPLASLKSLFGNDPSSQ*", "nucleotides": "ATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAGAATTAGATAAATGGGAAAAAATTCGGTTAAGGCCAGGAGGAAAAAAACAATACAAATTAAAACATCTAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTTAATCCTGGCCTTCTAGAGACATCAGAAGGGTGTAGACAAATACTGGGACAGCTACAACCAGCTCTTCAGACAGGATCAGAAGAATTTAGATCATTATATAATACAGTAGCAACCCTCTATTGTGTGCATCAAAAGATAGAGGTAAAAGACACCAAGGAAGCTTTAGAGAAAATAGAGGAAGAGCAAAACCAAAGTAAGAAAAAAGCAGCAGCTGCAGCAGCTGACACAGGAAACAGAAGCCAGGTCAGCCAAAATTACCCTATAGTGCAGAACCTCCAGGGGCAAATGGTACATCAGCCTTTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAATAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTACAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAATAGGTGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATTAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCAGGCAGGGCCTGTTGCACCAGGCCAAATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTAACCTTCAGGAACAAATAGGATGGATGACACATAATCCACCTATCCCAGTAGGAGATATCTATAAAAGATGGATAATTCTGGGGTTAAATAAAATAGTAAGAATGTATAGCCCTGTCAGTATTCTGGATATAAAACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAAAACTCTGAGAGCCGAGCAAGCAACACAGGAAGTAAAGAATTGGATGACAGAAACTTTGCTGGTCCAAAATGCAAATCCAGATTGTAAGACTATTTTAAAAGCATTAGGACCAGCAGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGGGGACCAGGCCACAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAACAAATTCAACTGTAATGATGCAGAGAGGCAATTTTAGGAATCAAAGAAAGACAGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCATATAGCAAGAAATTGCAGGGCCCCTAGAAAAAAGGGCTGTTGGAAATGTGGAAAAGAAGGGCACCAAATGAAAGATTGTACTGAGAGACAGGCTAATTTTTTAGGGAAGATCTGGCCTTCCCACAAGGGGAGGCCAGGGAATTTTCTTCAGAGCAAACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAACAACTCCCTCTCAGAAGCAGGGGCCGATAGACAAGGAACTGTATCCTTTAGCTTCCCTCAAATCACTCTTTGGCAACGACCCCTCGTCACAATAA" @@ -5379,7 +5379,7 @@ "subtype_start": 2084, "subtype_end": 5096, "orientation": "forward", - "distance": 0.14356929212362912, + "distance": 0.1880239208210378, "protein": "FFREDLAFPQGEAREFSSEQTRANSPTRRELQVWGRDNNSLSEAGADRQGTVSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMNLPGKWKPKMIGGIGGFIKVRQYDQILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTRILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLKWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIKLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTAEAELELAENREILKEPVHGVYYDPTKDLIAELQKQGQSQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIAIESIVIWGKTPKFKLPIQKETWETWWTDYWQATWIPDWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETRSGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSSGIRKILFLDGITKAQDDHERYHSNWRAMASDFNLPPIIAKEIVASCDKCQLKGEATHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSAAVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVREQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED", "aminoacids": "FFREDLAFPQGEAREFSSEQTRANSPTRRELQVWGRDNNSLSEAGADRQGTVSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMNLPGKWKPKMIGGIGGFIKVRQYDQILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSIPLDKDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTRILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLKWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIKLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVVPLTAEAELELAENREILKEPVHGVYYDPTKDLIAELQKQGQSQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKIAIESIVIWGKTPKFKLPIQKETWETWWTDYWQATWIPDWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETRSGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSSGIRKILFLDGITKAQDDHERYHSNWRAMASDFNLPPIIAKEIVASCDKCQLKGEATHGQVDCSPGIWQLDCTHLEGKIILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSAAVKAACWWAGIKQEFGIPYNPQSQGVIESMNKELKKIIGQVREQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIIDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*", "nucleotides": "TTTTTTAGGGAAGATCTGGCCTTCCCACAAGGGGAGGCCAGGGAATTTTCTTCAGAGCAAACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAACAACTCCCTCTCAGAAGCAGGGGCCGATAGACAAGGAACTGTATCCTTTAGCTTCCCTCAAATCACTCTTTGGCAACGACCCCTCGTCACAATAAAAATAGGGGGGCAGCTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGATATGAATTTACCAGGAAAATGGAAACCAAAAATGATAGGAGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACTCGTAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGATTGGCTGTACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGATAGTACTAAATGGAGAAAGTTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCGCATCCTGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTAGATGTGGGTGATGCCTATTTTTCAATTCCCTTAGATAAAGACTTCAGGAAGTACACTGCATTTACCATACCTAGTACAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAGGATATTAGAACCTTTTAGAAAACAAAATCCAGACATAGTTATCTATCAATACATGGATGATTTGTATGTGGGATCTGACTTAGAAATAGGACAGCATAGAACAAAAATAGAGGAACTGAGACAACATCTGTTGAAGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAAAGCTGCCAGAAAAAGATAGCTGGACTGTCAATGACATCCAGAAGTTAGTGGGAAAATTGAATTGGGCAAGTCAGATTTATGCAGGAATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACTAAAGCACTAACAGAAGTAGTACCACTAACAGCAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAGATTCTAAAAGAACCGGTACATGGAGTGTATTATGACCCAACGAAAGACCTAATAGCAGAACTACAGAAGCAGGGGCAAAGTCAATGGACATATCAAATTTATCAAGAACCATTTAAAAATCTGAAAACAGGAAAGTATGCAAGAATGAGGGGTGCCCACACTAATGATGTGAAACAATTAACAGAGGCAGTGCAAAAAATAGCCATAGAAAGCATAGTAATATGGGGAAAGACCCCTAAATTTAAATTACCTATACAAAAAGAAACATGGGAAACATGGTGGACAGACTATTGGCAAGCCACCTGGATTCCTGATTGGGAGTTTGTCAATACCCCTCCCTTAGTAAAATTATGGTACCAGTTAGAAAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGAGAAACTAGATCAGGCAAAGCAGGATATGTTACTGATAGAGGAAGACAAAAGGTTGTCCCCCTAACAGACACAACAAACCAGAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCAGGATTAGAAGTAAACATAGTGACAGACTCACAATATGCACTAGGAATCATTCAAGCACAACCAGATAAGAGTGAATCAGAGTTAGTCAGTCAAATAATAGAGCAGTTAATAAAGAAGGAAAAGGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTTCTGGAATCAGGAAGATACTATTTTTAGATGGAATAACTAAGGCCCAAGATGATCATGAGAGATACCACAGCAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTATAATAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGAGAAGCCACGCATGGACAAGTAGACTGCAGTCCAGGAATATGGCAACTAGATTGTACGCATTTAGAAGGAAAAATTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAGGGCAAGAAACAGCATACTTTCTCTTAAAACTAGCAGGAAGATGGCCAGTAAAGACAGTACATACAGATAATGGCAGCAATTTCACCAGTGCTGCGGTTAAGGCCGCCTGTTGGTGGGCGGGGATCAAGCAGGAATTTGGTATTCCCTACAATCCCCAAAGTCAAGGAGTCATAGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAAGTAAGAGAGCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAATAGACATAATAGCAACAGACATACAAACTAAAGAATTACAGAAACAAATCACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGACCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGACATAAAAGTAGTGCCAAGAAGAAAGGCAAAGATCATTAGAGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG" @@ -5391,7 +5391,7 @@ "subtype_start": 5040, "subtype_end": 5619, "orientation": "forward", - "distance": 0.43229166666666674, + "distance": 0.41080974064541675, "protein": "MENRWQVMIVWQVDRMRIRTWNSLVKHHIHVSKKAKGWVYRHHYESTHPRISSEVHIPLGEARLVIATYWGLHTGERDWHLGQGVSIEWREKKYITQVDPDLADQLIHLHYFDCFSESAIRNAIVGRLVSPQCEYQTGHNKVGSLQYLALVALITPKKRKPPLPSVRKLTEDRWNKPQKTKDHRGSHIMSGH", "aminoacids": "MENRWQVMIVWQVDRMRIRTWNSLVKHHIHVSKKAKGWVYRHHYESTHPRISSEVHIPLGEARLVIATYWGLHTGERDWHLGQGVSIEWREKKYITQVDPDLADQLIHLHYFDCFSESAIRNAIVGRLVSPQCEYQTGHNKVGSLQYLALVALITPKKRKPPLPSVRKLTEDRWNKPQKTKDHRGSHIMSGH*SF*", "nucleotides": "ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATACATGTCTCAAAGAAAGCTAAGGGATGGGTTTATAGACACCACTATGAAAGCACCCATCCAAGAATAAGTTCAGAAGTACATATCCCGCTAGGGGAAGCTAGATTAGTAATAGCAACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCACTTGGGTCAGGGAGTCTCCATAGAATGGAGGGAAAAGAAATATATCACACAAGTAGACCCTGACCTAGCAGACCAACTAATTCATCTGCATTATTTTGATTGTTTTTCAGAGTCTGCTATAAGAAATGCCATAGTAGGACGTTTAGTTAGCCCTCAGTGTGAATATCAAACAGGACATAACAAGGTAGGATCTCTACAGTACTTGGCACTAGTAGCATTAATAACGCCAAAAAAGAGAAAGCCACCTTTGCCTAGTGTTAGGAAATTGACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGACCACAGAGGGAGCCATATAATGAGTGGACACTAGAGCTTTTAG" @@ -5403,7 +5403,7 @@ "subtype_start": 5558, "subtype_end": 5850, "orientation": "forward", - "distance": 0.4807692307692313, + "distance": 0.43675751222921066, "protein": "MEQAPEDQGPQREPYNEWTLELLEELKSEAVRHFPRIWLHNLGQYIYATYGDTWTGVEALIRILQQLLFIHFRIGCQHSRIGITRQRRARNGASRS", "aminoacids": "MEQAPEDQGPQREPYNEWTLELLEELKSEAVRHFPRIWLHNLGQYIYATYGDTWTGVEALIRILQQLLFIHFRIGCQHSRIGITRQRRARNGASRS*T", "nucleotides": "ATGGAACAAGCCCCAGAAGACCAAGGACCACAGAGGGAGCCATATAATGAGTGGACACTAGAGCTTTTAGAGGAACTTAAGAGTGAAGCTGTTAGACATTTTCCTAGGATATGGCTCCATAACTTAGGACAATACATCTATGCAACTTATGGGGATACTTGGACAGGAGTGGAAGCTTTAATAAGAATTCTGCAACAACTGCTGTTTATTCATTTCAGAATTGGATGTCAACATAGCAGAATAGGCATTACTCGACAGAGGAGAGCAAGGAATGGAGCCAGTAGATCCTAGACT" @@ -5415,7 +5415,7 @@ "subtype_start": 5830, "subtype_end": 6045, "orientation": "forward", - "distance": 0.29166666666666674, + "distance": 0.31992687385740404, "protein": "MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRPPQNSETHQAALSKQ", "aminoacids": "MEPVDPRLEPWKHPGSQPKTPCTNCYCKKCCFHCQVCFIKKALGISYGRKKRRQRRRPPQNSETHQAALSKQ*", "nucleotides": "ATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCATCCAGGAAGTCAGCCTAAGACTCCTTGTACCAATTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTCTGTTTCATAAAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGACCTCCTCAAAACAGTGAGACTCATCAAGCAGCTCTATCAAAGCAGTAA" @@ -5427,7 +5427,7 @@ "subtype_start": 5969, "subtype_end": 6045, "orientation": "forward", - "distance": 0.6346153846153846, + "distance": 0.5058246474555488, "protein": "MAGRSGDSDEDLLKTVRLIKQLYQSSK", "aminoacids": "MAGRSGDSDEDLLKTVRLIKQLYQSSK", "nucleotides": "ATGGCAGGAAGAAGCGGAGACAGCGACGAAGACCTCCTCAAAACAGTGAGACTCATCAAGCAGCTCTATCAAAGCAGTAAG" @@ -5439,7 +5439,7 @@ "subtype_start": 6061, "subtype_end": 6310, "orientation": "forward", - "distance": 0.5439024390243903, + "distance": 0.4673093042749372, "protein": "MQPLVILAIVALVVAAIIAIVVWTIVLIEYRKILRQRKIDSIINRIRERAEDSGNESEGDQEELSALVEMGHHVEMGHHAPWNVDDL", "aminoacids": "MQPLVILAIVALVVAAIIAIVVWTIVLIEYRKILRQRKIDSIINRIRERAEDSGNESEGDQEELSALVEMGHHVEMGHHAPWNVDDL*", "nucleotides": "ATGCAACCCTTAGTAATATTAGCAATAGTAGCATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGACCATAGTGTTAATAGAATATAGGAAAATATTAAGACAAAGAAAGATAGATAGCATAATTAATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGAGATCAGGAAGAATTGTCGGCACTTGTGGAGATGGGGCACCATGTGGAAATGGGGCACCATGCTCCTTGGAATGTTGATGATCTGTAG" @@ -5451,7 +5451,7 @@ "subtype_start": 6224, "subtype_end": 8795, "orientation": "forward", - "distance": 0.49988317757009404, + "distance": 0.44637082472721223, "protein": "MRVKEIRKNCRHLWRWGTMWKWGTMLLGMLMICSAKEQLWVTVYYGVPVWKEATTTLFCASNAKAYDPEVHNVWATHACVPTDPNPQEVPLENVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVILNCTNVNVTTNNNSSSEEQMEVGEIKNCSFNIATRIKNKIKKEYALFNRLDVVPIEDDNTSYMLINCNTSVTTQACPKVTFEPIPIHYCAPAGFAILKCNDKKFNGTGPCNNVSTVQCTHGIKPVVSTQLLLNGSLAEEEIVVRSENFTNNAKTIIVQLNKTIEINCIRPNNNTRKSISLRPGQAIYATEDIIGNIRQAHCNIRRKDWDKALEQVVAKLREQFKNKTIVFNQSSGGDPEIVMHSFNCAGEFFYCNTTKLFNSTWNVNNTRNNTTDNSTITLPCRIKQIINRWQEVGKAMYAPPIKGQIKCSSNITGLLLTRDGGVREDNAPEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQRGKRAVTLGAMFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLRAIEAQQHMLQLTVWGIKQLQARVLAVERYLQDQQLLGIWGCSGKLICTTAVPWNTSWSNKSLEKIWKNMTWMEWEKEINNYTRTIYTLIEESQNQQEKNEQELLELDKWASLWNWFDITNWLWYIKIFIMIVGGIVGLRIVFTVLSIVNRVRQGYSPLSFQTRFPAPRGPDRPEGTEEEGGERDRDRSGQLVNGFFALIWDDLQSLCLFSYRRLRDLLLIVARIVELLGHRGWEALKYWWNLLQYWSQELKKSAVSLLNATAIAVAEGTDRVIEVVQRIGRAILHIPRRIRQGLERALL", "aminoacids": "MRVKEIRKNCRHLWRWGTMWKWGTMLLGMLMICSAKEQLWVTVYYGVPVWKEATTTLFCASNAKAYDPEVHNVWATHACVPTDPNPQEVPLENVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVILNCTNVNVTTNNNSSSEEQMEVGEIKNCSFNIATRIKNKIKKEYALFNRLDVVPIEDDNTSYMLINCNTSVTTQACPKVTFEPIPIHYCAPAGFAILKCNDKKFNGTGPCNNVSTVQCTHGIKPVVSTQLLLNGSLAEEEIVVRSENFTNNAKTIIVQLNKTIEINCIRPNNNTRKSISLRPGQAIYATEDIIGNIRQAHCNIRRKDWDKALEQVVAKLREQFKNKTIVFNQSSGGDPEIVMHSFNCAGEFFYCNTTKLFNSTWNVNNTRNNTTDNSTITLPCRIKQIINRWQEVGKAMYAPPIKGQIKCSSNITGLLLTRDGGVREDNAPEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQRGKRAVTLGAMFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLRAIEAQQHMLQLTVWGIKQLQARVLAVERYLQDQQLLGIWGCSGKLICTTAVPWNTSWSNKSLEKIWKNMTWMEWEKEINNYTRTIYTLIEESQNQQEKNEQELLELDKWASLWNWFDITNWLWYIKIFIMIVGGIVGLRIVFTVLSIVNRVRQGYSPLSFQTRFPAPRGPDRPEGTEEEGGERDRDRSGQLVNGFFALIWDDLQSLCLFSYRRLRDLLLIVARIVELLGHRGWEALKYWWNLLQYWSQELKKSAVSLLNATAIAVAEGTDRVIEVVQRIGRAILHIPRRIRQGLERALL*", "nucleotides": "ATGAGAGTGAAGGAGATCAGGAAGAATTGTCGGCACTTGTGGAGATGGGGCACCATGTGGAAATGGGGCACCATGCTCCTTGGAATGTTGATGATCTGTAGTGCTAAAGAACAATTGTGGGTCACAGTTTATTATGGGGTACCTGTGTGGAAAGAAGCAACCACCACTTTATTTTGTGCATCAAATGCTAAAGCATATGACCCAGAGGTGCATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCTAACCCACAAGAAGTACCATTGGAAAATGTGACAGAAAATTTTAATATGTGGAAAAATAACATGGTAGAACAGATGCATGAGGACATAATCAGTTTATGGGATCAAAGCTTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTATTTTAAATTGCACTAATGTGAATGTTACTACTAACAATAATAGTAGTAGTGAGGAACAGATGGAGGTAGGAGAAATAAAAAACTGCTCTTTCAATATTGCCACAAGAATAAAAAATAAGATAAAGAAAGAATATGCACTTTTTAATAGACTTGATGTAGTACCAATAGAGGATGATAATACAAGCTATATGTTGATAAATTGTAATACCTCAGTCACTACACAGGCCTGTCCAAAGGTAACCTTTGAACCAATTCCCATACATTATTGTGCCCCGGCTGGTTTTGCGATACTAAAATGTAATGATAAAAAGTTCAATGGAACAGGACCATGTAACAATGTCAGCACAGTACAATGTACACATGGAATTAAGCCAGTAGTGTCAACTCAACTGCTGTTAAATGGTAGTCTAGCAGAAGAAGAGATAGTAGTTAGATCTGAAAATTTCACGAACAATGCTAAAACCATAATAGTACAGCTGAATAAAACTATAGAAATTAATTGTATAAGACCCAACAATAATACAAGAAAAAGTATATCTTTAAGACCGGGGCAAGCAATTTATGCAACAGAAGACATAATAGGAAATATAAGACAAGCACATTGTAACATTAGGAGAAAAGACTGGGATAAAGCTTTAGAACAGGTAGTTGCAAAATTAAGAGAACAATTTAAGAATAAAACAATAGTCTTTAATCAATCCTCAGGAGGAGACCCAGAAATTGTAATGCATAGTTTTAATTGTGCAGGGGAATTTTTCTACTGTAACACAACAAAGCTGTTTAATAGTACTTGGAATGTTAATAACACTCGGAATAATACTACTGATAATAGCACCATCACTCTCCCGTGCAGAATAAAACAAATTATAAACAGATGGCAGGAAGTAGGAAAAGCAATGTATGCTCCTCCCATCAAAGGGCAAATTAAATGTTCATCAAATATTACAGGGTTATTATTAACAAGAGATGGTGGTGTCCGCGAGGACAACGCCCCTGAGATCTTTAGACCTGGAGGAGGAGATATGAGGGATAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAAAATTGAGCCATTAGGAGTGGCACCCACCAAGGCAAAGAGAAGAGTGGTGCAAAGAGGAAAAAGAGCAGTAACGCTGGGAGCTATGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAATGACGCTGACGGTACAGGCCAGGCAATTATTGTCTGGTATAGTGCAGCAGCAGAACAATCTGCTGAGGGCTATTGAGGCGCAACAGCATATGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACTTACAGGATCAACAGCTCCTAGGGATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTACCTTGGAATACTAGTTGGAGTAATAAATCTTTGGAAAAGATTTGGAAAAACATGACCTGGATGGAGTGGGAGAAAGAAATTAACAATTACACAAGGACAATATACACCTTAATTGAAGAATCGCAAAACCAGCAAGAAAAGAATGAACAGGAATTATTGGAATTGGATAAGTGGGCAAGTTTGTGGAATTGGTTTGACATAACAAACTGGCTGTGGTATATAAAAATATTCATCATGATAGTAGGAGGTATAGTAGGGTTAAGAATAGTTTTTACTGTGCTTTCTATAGTGAATAGAGTTAGGCAGGGATATTCACCATTGTCATTCCAGACCCGCTTCCCAGCTCCGAGGGGACCAGACAGGCCCGAAGGAACAGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGGGCAATTAGTGAACGGATTCTTTGCGCTTATCTGGGACGACCTGCAGAGCCTGTGCCTCTTCAGCTACCGCCGCTTGAGAGACTTACTCTTGATTGTAGCGAGGATTGTGGAACTTCTGGGACACAGGGGGTGGGAGGCCCTCAAATATTGGTGGAATCTCCTGCAGTACTGGAGTCAGGAACTAAAGAAGAGTGCTGTTAGTTTGCTTAATGCCACAGCTATAGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAAGAATTGGTAGAGCTATTCTCCACATCCCTAGAAGAATAAGACAGGGCTTAGAAAGGGCTTTGCTATAA" @@ -5463,7 +5463,7 @@ "subtype_start": 8376, "subtype_end": 8469, "orientation": "forward", - "distance": 0.886666666666666, + "distance": 0.5884955752212387, "protein": "RPASQLRGDQTGPKEQKKKVERETETDPGN", "aminoacids": "RPASQLRGDQTGPKEQKKKVERETETDPGN**", "nucleotides": "AGACCCGCTTCCCAGCTCCGAGGGGACCAGACAGGCCCGAAGGAACAGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGGGCAATTAGTGA" @@ -5475,7 +5475,7 @@ "subtype_start": 8377, "subtype_end": 8653, "orientation": "forward", - "distance": 0.38351648351648326, + "distance": 0.3821725799386769, "protein": "DPLPSSEGTRQARRNRRRRWRERQRQIRAISERILCAYLGRPAEPVPLQLPPLERLTLDCSEDCGTSGTQGVGGPQILVESPAVLESGTKEECC", "aminoacids": "DPLPSSEGTRQARRNRRRRWRERQRQIRAISERILCAYLGRPAEPVPLQLPPLERLTLDCSEDCGTSGTQGVGGPQILVESPAVLESGTKEECC*", "nucleotides": "GACCCGCTTCCCAGCTCCGAGGGGACCAGACAGGCCCGAAGGAACAGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGGGCAATTAGTGAACGGATTCTTTGCGCTTATCTGGGACGACCTGCAGAGCCTGTGCCTCTTCAGCTACCGCCGCTTGAGAGACTTACTCTTGATTGTAGCGAGGATTGTGGAACTTCTGGGACACAGGGGGTGGGAGGCCCTCAAATATTGGTGGAATCTCCTGCAGTACTGGAGTCAGGAACTAAAGAAGAGTGCTGTTAG" @@ -5487,7 +5487,7 @@ "subtype_start": 8796, "subtype_end": 9417, "orientation": "forward", - "distance": 0.6048780487804808, + "distance": 0.49382716049382436, "protein": "MGGKWSKCSLVGWPAIRERMRRAEPAPAAEGVGAASRDLEKHGALTTSNTAANNAACAWLEAQEEEEVGFPVRPQVPLRPMTYKGAMDLGHFLKEKGGLEGLIYSPKRQEILDLWVYHTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPDEGENSCLLHPMNQHGADDTEREVLMWKFDSSLAFHHKARELHPEYYKNC", "aminoacids": "MGGKWSKCSLVGWPAIRERMRRAEPAPAAEGVGAASRDLEKHGALTTSNTAANNAACAWLEAQEEEEVGFPVRPQVPLRPMTYKGAMDLGHFLKEKGGLEGLIYSPKRQEILDLWVYHTQGYFPDWQNYTPGPGTRYPLTFGWCFKLVPVEPDEGENSCLLHPMNQHGADDTEREVLMWKFDSSLAFHHKARELHPEYYKNC*", "nucleotides": "ATGGGTGGCAAGTGGTCAAAATGTAGTCTGGTTGGATGGCCTGCTATAAGGGAAAGAATGAGACGAGCTGAGCCAGCTCCAGCAGCAGAAGGGGTGGGAGCAGCATCTCGAGACTTGGAAAAACATGGAGCACTCACAACTAGTAATACAGCAGCTAATAATGCTGCTTGTGCCTGGCTGGAAGCACAAGAGGAGGAAGAGGTGGGGTTTCCAGTCAGACCTCAGGTACCTTTAAGACCAATGACTTACAAAGGAGCTATGGATCTTGGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCCCCAAAAAGACAAGAAATCCTTGATCTGTGGGTCTACCACACACAAGGCTACTTCCCTGATTGGCAGAACTATACACCAGGGCCAGGGACTAGATATCCATTAACCTTTGGATGGTGCTTCAAGCTAGTACCAGTTGAGCCAGATGAAGGAGAGAATAGCTGTTTGCTACACCCGATGAACCAGCATGGGGCAGATGACACAGAAAGAGAAGTATTAATGTGGAAGTTTGACAGCAGCCTAGCATTTCATCACAAGGCCCGAGAGCTGCATCCGGAGTACTACAAAAACTGCTGA" diff --git a/tests/expected-results-single-csv/orfs.csv b/tests/expected-results-single-csv/orfs.csv index 1c28581..c89b875 100644 --- a/tests/expected-results-single-csv/orfs.csv +++ b/tests/expected-results-single-csv/orfs.csv @@ -1,12 +1,12 @@ seqid,name,start,end,subtype_start,subtype_end,orientation,distance,protein,aminoacids,nucleotides -MN692145,gag,775,2287,789,2292,forward,0.15900000000000003,MGARASVLSGGKLDQWEKIRLRPGGKKKYQLKHIVWASKELERFAVNPGLLETTEGCRQILGQLQPSLQTGSEELKSLYNTVATLYCVHQRIDVKDTKEALDKIEEEQNKSKEKAKQAAADTGNSNQVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKESFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPGATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRSQRKIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETTTPSQKQESTGKELYPPLASLRSLFGNDPSSQ,MGARASVLSGGKLDQWEKIRLRPGGKKKYQLKHIVWASKELERFAVNPGLLETTEGCRQILGQLQPSLQTGSEELKSLYNTVATLYCVHQRIDVKDTKEALDKIEEEQNKSKEKAKQAAADTGNSNQVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKESFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPGATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRSQRKIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETTTPSQKQESTGKELYPPLASLRSLFGNDPSSQ*R*,ATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAAAATTAGATCAATGGGAGAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATCAATTAAAACATATAGTATGGGCAAGCAAGGAACTAGAACGATTTGCAGTTAATCCTGGCCTGTTAGAAACAACAGAAGGATGTAGACAAATACTGGGACAGCTACAACCATCTCTTCAGACAGGATCAGAAGAACTTAAATCATTATATAATACAGTAGCAACCCTCTATTGTGTGCATCAAAGGATAGATGTAAAAGACACCAAGGAAGCATTAGATAAGATAGAGGAAGAGCAAAACAAGAGTAAGGAAAAAGCAAAACAAGCAGCAGCTGACACAGGAAACAGCAACCAGGTCAGCCAAAATTACCCTATAGTGCAGAACCTTCAGGGCCAAATGGTACACCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAATAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAATACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGAGTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACCACTAGTACCCTTCAGGAACAAATAGGATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGGATGTATAGTCCTACCAGCATTCTGGATATAAGACAAGGACCAAAAGAATCCTTTAGAGATTATGTAGACCGGTTCTACAAAACTCTAAGAGCTGAGCAAGCCTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATTCAAACCCAGATTGTAAGACTATCTTAAAAGCATTGGGACCAGGAGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCCGGCCATAAAGCAAGAGTCTTGGCTGAAGCAATGAGCCAAGTAACAAATTCAGCTACCATAATGATGCAGAGAGGCAATTTTAGGAGCCAAAGGAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAGGGGCATATAGCCAGAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGATTGTACTGAAAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGGAGGCCAGGAAATTTCCTTCAGAGCAGGCCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAACAACTCCCTCTCAGAAGCAGGAGTCGACAGGCAAGGAACTGTATCCTCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAG -MN692145,pol,2070,5085,2084,5096,forward,0.10618145563310066,FFRENLAFPQGEARKFPSEQARANSPTRRELQVWGRDNNSLSEAGVDRQGTVSSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQISIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKESWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARVRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGASNRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLINKEKVYLAWVPAHKGIGGNEQVDKLVSTGIRKVLFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAREIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKVKIIRDYGKQMAGDDCVASRQDED,FFRENLAFPQGEARKFPSEQARANSPTRRELQVWGRDNNSLSEAGVDRQGTVSSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQISIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKESWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARVRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGASNRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLINKEKVYLAWVPAHKGIGGNEQVDKLVSTGIRKVLFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAREIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKVKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGGAGGCCAGGAAATTTCCTTCAGAGCAGGCCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAACAACTCCCTCTCAGAAGCAGGAGTCGACAGGCAAGGAACTGTATCCTCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTACCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATTAAAGTAAGACAGTATGATCAGATATCCATAGAAATCTGTGGACATAAAGCTATAGGGACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAAATTGGTTGTACTTTAAATTTCCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAACAGAAATTTGTACAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGACAGCACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAAAGAACTCAAGATTTCTGGGAAGTTCAATTAGGGATACCACATCCAGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATGAGGATTTCAGGAAGTATACTGCATTTACCATACCTAGTATAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAATGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGACATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAATTGAGACAACATCTGTTGAGGTGGGGATTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAGAAAAAGAAAGCTGGACTGTCAATGACATACAAAAGTTAGTGGGTAAATTGAATTGGGCAAGTCAGATTTATGCAGGGATCAAAGTAAAACAATTATGTAAACTTCTTAGGGGAGCCAAAGCACTAACAGAAGTAATACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAGATTTTAAAAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAGCAGGGGCAAGGCCAATGGACATATCAGATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAGTGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAGCCACTGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAGGTTACCCATACAAAAAGAAACATGGGAAACATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCATCTAATAGAGAGACTAAATTAGGAAAAGCAGGATATGTTACTGACAGAGGAAGACAGAAAGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAGTTACAAGCAATTCATCTAGCTTTGCAGGATTCAGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATAAAAGTGAATCAGAGTTAGTCAATCAAATAATAGAACAGTTAATAAACAAGGAAAAGGTCTACTTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTTAGTACTGGAATTAGAAAAGTACTATTTTTAGATGGAATAGATAAGGCCCAAGAAGAACATGAGAAATACCACAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTGGTAGCAAGAGAAATAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGAGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAGCTAGATTGTACACATTTAGAAGGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAAACAGGACAGGAAACAGCATACTTTCTCTTAAAATTAGCAGGAAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGTAATTTCACTAGTACTACAGTTAAGGCCGCCTGTTGGTGGGCGGGGATCAAGCAGGAGTTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGACCAGGCTGAACATCTTAAAACAGCAGTACAAATGGCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTGATACAAGACAATAGTGACATAAAAGTAGTGCCAAGAAGAAAAGTAAAAATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG -MN692145,vif,5029,5608,5040,5619,forward,0.21875,MENRWQVMIVWQVDRMRIRTWKSLVKHHMYVSGKAKGWFYRHHYESHHPRISSEVHVPLGDARLVITTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPNLADQLIHLYYFDCFSESAIRSAILGHIVSPSCEYQAGHNKVGSLQYLALAALITPKRRKPPLPSVAKLTEDRWNKPQKTKGHRGSHIRNGH,MENRWQVMIVWQVDRMRIRTWKSLVKHHMYVSGKAKGWFYRHHYESHHPRISSEVHVPLGDARLVITTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPNLADQLIHLYYFDCFSESAIRSAILGHIVSPSCEYQAGHNKVGSLQYLALAALITPKRRKPPLPSVAKLTEDRWNKPQKTKGHRGSHIRNGH*,ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAAAAGTTTAGTAAAACACCATATGTATGTTTCAGGGAAAGCTAAGGGATGGTTTTATAGACATCACTATGAAAGCCATCATCCAAGAATAAGTTCAGAAGTACATGTCCCACTAGGGGATGCTAGATTGGTAATAACAACATATTGGGGTCTGCATACAGGAGAAAGAGATTGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGGAAAAGGAGATATAGCACACAAGTAGACCCCAACCTAGCAGACCAACTGATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAGTGCCATATTAGGACATATAGTTAGTCCTAGTTGTGAATATCAAGCAGGACATAACAAGGTAGGATCTCTACAGTACTTGGCATTAGCAGCATTAATAACACCAAAAAGGAGAAAGCCCCCTTTGCCTAGTGTTGCAAAGCTGACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCACCGAGGGAGCCATATCAGGAATGGACACTAG -MN692145,vpr,5547,5841,5558,5850,forward,0.44358974358974423,MEQAPEDQGPPREPYQEWTLELLEELKNEAVRHFPRMWLHGLGQHIYDTYGDTWTGVEAIIRILQQLLFIHFRIGCQHSRIGIIRQRRTRNGANRS,MEQAPEDQGPPREPYQEWTLELLEELKNEAVRHFPRMWLHGLGQHIYDTYGDTWTGVEAIIRILQQLLFIHFRIGCQHSRIGIIRQRRTRNGANRS*T,ATGGAACAAGCCCCAGAAGACCAAGGGCCACCGAGGGAGCCATATCAGGAATGGACACTAGAGCTTTTAGAGGAGCTTAAGAATGAAGCTGTTAGACATTTTCCTAGGATGTGGCTCCATGGCTTAGGGCAACATATCTATGACACTTATGGGGATACTTGGACAGGAGTGGAAGCCATAATAAGAATTCTGCAACAACTGCTGTTCATTCATTTCAGGATTGGGTGTCAACATAGCAGAATAGGCATTATTCGCCAGAGGAGAACAAGAAATGGAGCCAATAGATCCTAGACT -MN692145,tat_exon1,5818,6037,5830,6045,forward,0.29166666666666674,MEPIDPRLEPWKHPGSQPKTACTSCYCKKCCFHCQVCFMTKALGISYGRKKRRQRRRASQDSQTHQVSLSKQ,MEPIDPRLEPWKHPGSQPKTACTSCYCKKCCFHCQVCFMTKALGISYGRKKRRQRRRASQDSQTHQVSLSKQ*,ATGGAGCCAATAGATCCTAGACTAGAGCCCTGGAAGCATCCAGGAAGCCAGCCTAAGACTGCTTGTACCTCTTGCTATTGTAAAAAGTGTTGCTTTCATTGTCAAGTCTGTTTCATGACAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTTCTCAAGACAGTCAGACTCATCAAGTTTCTCTATCAAAGCAGTAA -MN692145,rev_exon1,5957,6038,5969,6045,forward,0.5192307692307692,MAGRSGDSDEELLKTVRLIKFLYQSSK,MAGRSGDSDEELLKTVRLIKFLYQSSK,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTTCTCAAGACAGTCAGACTCATCAAGTTTCTCTATCAAAGCAGTAAG -MN692145,vpu,6049,6298,6061,6310,forward,0.5804878048780489,MNSLQISAIVAIVVAIILAIVVWSIVFIEYRKILRQRKIDRLIDRIRERAEDSGNESEGDQEELSTALMEMGHHAPWDVDDL,MNSLQISAIVAIVVAIILAIVVWSIVFIEYRKILRQRKIDRLIDRIRERAEDSGNESEGDQEELSTALMEMGHHAPWDVDDL*,ATGAACTCTTTACAAATATCAGCAATAGTAGCAATAGTAGTAGCAATAATACTAGCAATAGTTGTGTGGTCTATAGTATTCATAGAATATAGGAAAATATTAAGACAAAGAAAAATAGATAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGGGATCAGGAAGAACTATCAACAGCACTTATGGAGATGGGGCACCATGCTCCTTGGGATGTTGATGATCTGTAG -MN692145,env,6212,8783,6224,8795,forward,0.4975467289719626,MRVKGIRKNYQQHLWRWGTMLLGMLMICSAAGNLWVTVYYGVPVWKEATTTLFCASDAKAYGTEVHNVWATHACVPTDPNPQEVRLENVTENFNMWRNPMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDLGQESTNNNITGSIEKGEMKNCSFNISSSKGSKGHKEYASFYKLDVVPIGNNKTNGNYSSYRLISCNTSVITQACPKVSFEPIPIHFCAPAGYAILKCNDKQFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSANFTDNAKTIIVQLNQSVEITCTRPGNNTIRGVHMGPGKAFYAGAITGDIRKAHCIINKAKWNSTLRLVVAKLSEQFRNKTINFTQPSGGDPEIVTHSFNCGGEFFYCNTTKLFNSTWNATHMINGTWNDTEGNITLPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGGKTNESNTTEIFRPGGGDMRDNWRSELYKYKVVRIEPLGVAPTKAKRRVVQREKRAVGIGALFLGFLGAAGSTMGATSMALTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGVKQLQARVLALERYLKDQQLLGFWGCSGKLICTTDVPWNASWSNKSLGQIWENMTWMEWEREIDNYTSLIYTLITESQIQQEQNEKELLELDKWANLWNWFGITNWLWYIKIFIMIVGGLVGLRIVFAVLSIVNRVRQGYSPLSFQTRFPAPRGPDRPEGIEEEGGERDRDRSAPLVKGFLALIWVDLRSLCLFSYHRLRDLLLIITRIVELLGRRGWEVLKYLWSLLQYWTQELKNSAVSLLNATAIAVAEGTDRIIEVLQRVFRAILHIPTRIRQGFERALL,MRVKGIRKNYQQHLWRWGTMLLGMLMICSAAGNLWVTVYYGVPVWKEATTTLFCASDAKAYGTEVHNVWATHACVPTDPNPQEVRLENVTENFNMWRNPMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDLGQESTNNNITGSIEKGEMKNCSFNISSSKGSKGHKEYASFYKLDVVPIGNNKTNGNYSSYRLISCNTSVITQACPKVSFEPIPIHFCAPAGYAILKCNDKQFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSANFTDNAKTIIVQLNQSVEITCTRPGNNTIRGVHMGPGKAFYAGAITGDIRKAHCIINKAKWNSTLRLVVAKLSEQFRNKTINFTQPSGGDPEIVTHSFNCGGEFFYCNTTKLFNSTWNATHMINGTWNDTEGNITLPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGGKTNESNTTEIFRPGGGDMRDNWRSELYKYKVVRIEPLGVAPTKAKRRVVQREKRAVGIGALFLGFLGAAGSTMGATSMALTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGVKQLQARVLALERYLKDQQLLGFWGCSGKLICTTDVPWNASWSNKSLGQIWENMTWMEWEREIDNYTSLIYTLITESQIQQEQNEKELLELDKWANLWNWFGITNWLWYIKIFIMIVGGLVGLRIVFAVLSIVNRVRQGYSPLSFQTRFPAPRGPDRPEGIEEEGGERDRDRSAPLVKGFLALIWVDLRSLCLFSYHRLRDLLLIITRIVELLGRRGWEVLKYLWSLLQYWTQELKNSAVSLLNATAIAVAEGTDRIIEVLQRVFRAILHIPTRIRQGFERALL*,ATGAGAGTGAAGGGGATCAGGAAGAACTATCAACAGCACTTATGGAGATGGGGCACCATGCTCCTTGGGATGTTGATGATCTGTAGTGCTGCAGGCAATTTGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAAAGAAGCAACCACCACTCTATTTTGTGCATCAGATGCTAAAGCATATGGTACAGAGGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTGAGATTGGAAAATGTGACAGAAAATTTTAATATGTGGAGAAATCCAATGGTAGAACAGATGCATGAGGATATAATTAGTTTATGGGATCAAAGCCTAAAGCCATGTGTAAAGTTGACCCCACTCTGTGTCACTTTAAATTGCACTGATTTGGGACAGGAGAGTACCAATAATAATATCACAGGAAGTATAGAGAAAGGAGAAATGAAAAACTGCTCTTTCAATATCTCCTCAAGCAAAGGAAGTAAGGGGCATAAAGAATATGCATCTTTTTATAAACTTGATGTAGTACCAATAGGTAATAATAAGACTAATGGTAATTATTCTAGCTATAGGTTGATAAGTTGTAATACCTCAGTCATTACACAGGCCTGTCCAAAAGTATCATTTGAGCCAATTCCCATACATTTTTGTGCCCCGGCTGGGTATGCGATTCTAAAGTGTAATGATAAACAATTCAATGGAACAGGACCATGTACAAATGTCAGCACAGTACAGTGTACACATGGAATTAGGCCAGTAGTATCAACTCAACTGCTGTTAAATGGTAGTCTAGCAGAAGAAGAGGTAGTAATTAGATCTGCCAATTTCACGGACAATGCTAAAACCATAATAGTACAGCTGAACCAATCTGTAGAAATTACTTGTACAAGACCCGGTAACAATACAATAAGAGGGGTTCACATGGGACCAGGGAAGGCATTTTATGCAGGAGCAATAACAGGAGATATAAGAAAAGCACATTGTATCATTAATAAAGCAAAATGGAACAGTACTTTAAGACTGGTAGTTGCAAAATTAAGTGAGCAATTTAGGAATAAAACAATAAACTTTACTCAACCCTCAGGAGGGGACCCAGAAATTGTAACACACAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAATACAACAAAACTGTTTAATAGTACTTGGAATGCAACACACATGATTAATGGTACTTGGAATGATACTGAGGGAAATATCACCCTCCCATGCAGAATAAAACAAATTATAAACATGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCATCAGAGGACAAATTAGATGTTCATCCAATATTACAGGGTTGCTATTAACAAGAGATGGTGGTAAGACTAACGAGAGCAACACCACCGAGATCTTTAGACCTGGAGGAGGAGATATGAGAGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAGAATTGAACCATTAGGGGTAGCACCCACCAAGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTCTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAACGTCGATGGCGTTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAACAGCAGAACAATTTGCTGAGAGCTATTGAGGCGCAACAACATTTGTTGCAACTCACAGTCTGGGGCGTCAAGCAGCTCCAGGCAAGAGTCCTGGCTCTGGAAAGATACCTAAAGGATCAACAGCTCCTGGGGTTTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGATGTGCCTTGGAATGCTAGTTGGAGTAATAAATCTCTGGGACAAATTTGGGAGAACATGACCTGGATGGAGTGGGAAAGAGAAATTGATAATTACACAAGCTTAATATACACTTTAATTACAGAATCGCAGATCCAACAAGAACAGAATGAAAAAGAATTGTTGGAATTGGATAAATGGGCAAATTTGTGGAATTGGTTTGGCATAACAAACTGGCTGTGGTACATAAAAATATTTATAATGATAGTAGGAGGCTTAGTAGGTTTAAGAATAGTTTTTGCTGTACTTTCTATAGTGAATAGAGTTAGGCAGGGATACTCACCATTATCGTTTCAGACCCGCTTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGCTCCATTAGTGAAAGGATTCTTAGCACTTATCTGGGTCGATCTACGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATAATAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGTCCTCAAATACTTGTGGAGTCTCCTACAGTATTGGACACAGGAACTAAAGAATAGTGCTGTTAGCTTGCTCAATGCCACAGCCATAGCAGTAGCTGAGGGGACAGATAGGATTATAGAAGTATTACAAAGAGTTTTTAGAGCTATCCTCCATATCCCTACAAGAATAAGACAGGGCTTTGAAAGGGCTTTGCTATAA -MN692145,tat_exon2,8364,8460,8376,8469,forward,0.4866666666666659,RPASQPRGDPTGPKESKKKVERETETDPLH,RPASQPRGDPTGPKESKKKVERETETDPLH**,AGACCCGCTTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGCTCCATTAGTGA -MN692145,rev_exon2,8365,8641,8377,8653,forward,0.2637362637362637,DPLPSPEGTRQARRNRRRRWRERQRQIRSISERILSTYLGRSTEPVPLQLPPLERLTLDNNEDCGTSGTQGVGSPQILVESPTVLDTGTKE,DPLPSPEGTRQARRNRRRRWRERQRQIRSISERILSTYLGRSTEPVPLQLPPLERLTLDNNEDCGTSGTQGVGSPQILVESPTVLDTGTKE*,GACCCGCTTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGCTCCATTAGTGAAAGGATTCTTAGCACTTATCTGGGTCGATCTACGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATAATAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGTCCTCAAATACTTGTGGAGTCTCCTACAGTATTGGACACAGGAACTAAAGAATAG -MN692145,nef,8784,9576,8796,9417,forward,0.3878048780487735,MGGKWSKSSLVGWPNVRERMRRAEPAADGVGAVSRDLERHGAITSSNTATNNADCAWLEAQKEEEVGFPVTPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIHSQKRQDILDLWIYHTQGYFPDWQNYTPGPGVRYPLTFGWCFKLVPVEPTDRENDRLLHPASLQGMEDPEGEVLEWRFDSRLAFHHMARELHPEYYKNC,MGGKWSKSSLVGWPNVRERMRRAEPAADGVGAVSRDLERHGAITSSNTATNNADCAWLEAQKEEEVGFPVTPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIHSQKRQDILDLWIYHTQGYFPDWQNYTPGPGVRYPLTFGWCFKLVPVEPTDRENDRLLHPASLQGMEDPEGEVLEWRFDSRLAFHHMARELHPEYYKNC*HRAFYKGLSAGDFPGEAWPGRGRGVASPQMLHISSCFCLYWVSLVRPDLSLGALWLTREPTA*,ATGGGGGGCAAGTGGTCAAAAAGTAGTTTGGTTGGATGGCCTAATGTAAGGGAAAGAATGAGACGAGCTGAGCCAGCAGCAGATGGGGTGGGAGCAGTATCTCGAGACTTGGAAAGACATGGAGCAATCACAAGTAGTAATACAGCAACTAACAATGCTGATTGTGCCTGGCTAGAAGCACAAAAGGAGGAGGAGGTGGGTTTTCCAGTCACACCTCAGGTACCTTTAAGACCAATGACTTACAAGGCAGCTGTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCACTCCCAAAAAAGACAAGATATTCTTGATCTATGGATCTACCACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGGTCAGATATCCACTGACCTTTGGATGGTGCTTCAAGCTAGTACCAGTTGAGCCCACTGACAGAGAGAATGACAGATTGCTGCACCCTGCAAGCCTGCAGGGGATGGAAGACCCGGAGGGAGAAGTGTTAGAGTGGAGGTTTGACAGCCGCCTGGCATTTCATCACATGGCCCGAGAGCTGCATCCGGAGTACTACAAGAACTGCTGACATCGAGCTTTCTACAAGGGACTTTCCGCTGGGGACTTTCCAGGGGAGGCGTGGCCTGGGCGGGGCAGGGGAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTCTGCCTGTACTGGGTCTCTCTGGTTAGACCAGATCTGAGCCTGGGAGCTCTCTGGCTGACTAGGGAACCCACTGCTTAA +MN692145,gag,775,2287,789,2292,forward,0.20410783055198978,MGARASVLSGGKLDQWEKIRLRPGGKKKYQLKHIVWASKELERFAVNPGLLETTEGCRQILGQLQPSLQTGSEELKSLYNTVATLYCVHQRIDVKDTKEALDKIEEEQNKSKEKAKQAAADTGNSNQVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKESFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPGATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRSQRKIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETTTPSQKQESTGKELYPPLASLRSLFGNDPSSQ,MGARASVLSGGKLDQWEKIRLRPGGKKKYQLKHIVWASKELERFAVNPGLLETTEGCRQILGQLQPSLQTGSEELKSLYNTVATLYCVHQRIDVKDTKEALDKIEEEQNKSKEKAKQAAADTGNSNQVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKESFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPGATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRSQRKIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETTTPSQKQESTGKELYPPLASLRSLFGNDPSSQ*R*,ATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAAAATTAGATCAATGGGAGAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATCAATTAAAACATATAGTATGGGCAAGCAAGGAACTAGAACGATTTGCAGTTAATCCTGGCCTGTTAGAAACAACAGAAGGATGTAGACAAATACTGGGACAGCTACAACCATCTCTTCAGACAGGATCAGAAGAACTTAAATCATTATATAATACAGTAGCAACCCTCTATTGTGTGCATCAAAGGATAGATGTAAAAGACACCAAGGAAGCATTAGATAAGATAGAGGAAGAGCAAAACAAGAGTAAGGAAAAAGCAAAACAAGCAGCAGCTGACACAGGAAACAGCAACCAGGTCAGCCAAAATTACCCTATAGTGCAGAACCTTCAGGGCCAAATGGTACACCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAATAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAATACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGAGTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACCACTAGTACCCTTCAGGAACAAATAGGATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGGATGTATAGTCCTACCAGCATTCTGGATATAAGACAAGGACCAAAAGAATCCTTTAGAGATTATGTAGACCGGTTCTACAAAACTCTAAGAGCTGAGCAAGCCTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATTCAAACCCAGATTGTAAGACTATCTTAAAAGCATTGGGACCAGGAGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCCGGCCATAAAGCAAGAGTCTTGGCTGAAGCAATGAGCCAAGTAACAAATTCAGCTACCATAATGATGCAGAGAGGCAATTTTAGGAGCCAAAGGAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAGGGGCATATAGCCAGAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGATTGTACTGAAAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGGAGGCCAGGAAATTTCCTTCAGAGCAGGCCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAACAACTCCCTCTCAGAAGCAGGAGTCGACAGGCAAGGAACTGTATCCTCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAG +MN692145,pol,2070,5085,2084,5096,forward,0.14621890274040306,FFRENLAFPQGEARKFPSEQARANSPTRRELQVWGRDNNSLSEAGVDRQGTVSSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQISIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKESWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARVRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGASNRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLINKEKVYLAWVPAHKGIGGNEQVDKLVSTGIRKVLFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAREIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKVKIIRDYGKQMAGDDCVASRQDED,FFRENLAFPQGEARKFPSEQARANSPTRRELQVWGRDNNSLSEAGVDRQGTVSSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQISIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKESWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARVRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGASNRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLINKEKVYLAWVPAHKGIGGNEQVDKLVSTGIRKVLFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAREIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKVKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGGAGGCCAGGAAATTTCCTTCAGAGCAGGCCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAACAACTCCCTCTCAGAAGCAGGAGTCGACAGGCAAGGAACTGTATCCTCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTACCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATTAAAGTAAGACAGTATGATCAGATATCCATAGAAATCTGTGGACATAAAGCTATAGGGACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAAATTGGTTGTACTTTAAATTTCCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAACAGAAATTTGTACAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGACAGCACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAAAGAACTCAAGATTTCTGGGAAGTTCAATTAGGGATACCACATCCAGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATGAGGATTTCAGGAAGTATACTGCATTTACCATACCTAGTATAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAATGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGACATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAATTGAGACAACATCTGTTGAGGTGGGGATTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAGAAAAAGAAAGCTGGACTGTCAATGACATACAAAAGTTAGTGGGTAAATTGAATTGGGCAAGTCAGATTTATGCAGGGATCAAAGTAAAACAATTATGTAAACTTCTTAGGGGAGCCAAAGCACTAACAGAAGTAATACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAGATTTTAAAAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAGCAGGGGCAAGGCCAATGGACATATCAGATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAGTGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAGCCACTGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAGGTTACCCATACAAAAAGAAACATGGGAAACATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCATCTAATAGAGAGACTAAATTAGGAAAAGCAGGATATGTTACTGACAGAGGAAGACAGAAAGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAGTTACAAGCAATTCATCTAGCTTTGCAGGATTCAGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATAAAAGTGAATCAGAGTTAGTCAATCAAATAATAGAACAGTTAATAAACAAGGAAAAGGTCTACTTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTTAGTACTGGAATTAGAAAAGTACTATTTTTAGATGGAATAGATAAGGCCCAAGAAGAACATGAGAAATACCACAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTGGTAGCAAGAGAAATAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGAGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAGCTAGATTGTACACATTTAGAAGGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAAACAGGACAGGAAACAGCATACTTTCTCTTAAAATTAGCAGGAAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGTAATTTCACTAGTACTACAGTTAAGGCCGCCTGTTGGTGGGCGGGGATCAAGCAGGAGTTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGACCAGGCTGAACATCTTAAAACAGCAGTACAAATGGCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTGATACAAGACAATAGTGACATAAAAGTAGTGCCAAGAAGAAAAGTAAAAATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG +MN692145,vif,5029,5608,5040,5619,forward,0.2608047690014903,MENRWQVMIVWQVDRMRIRTWKSLVKHHMYVSGKAKGWFYRHHYESHHPRISSEVHVPLGDARLVITTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPNLADQLIHLYYFDCFSESAIRSAILGHIVSPSCEYQAGHNKVGSLQYLALAALITPKRRKPPLPSVAKLTEDRWNKPQKTKGHRGSHIRNGH,MENRWQVMIVWQVDRMRIRTWKSLVKHHMYVSGKAKGWFYRHHYESHHPRISSEVHVPLGDARLVITTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPNLADQLIHLYYFDCFSESAIRSAILGHIVSPSCEYQAGHNKVGSLQYLALAALITPKRRKPPLPSVAKLTEDRWNKPQKTKGHRGSHIRNGH*,ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAAAAGTTTAGTAAAACACCATATGTATGTTTCAGGGAAAGCTAAGGGATGGTTTTATAGACATCACTATGAAAGCCATCATCCAAGAATAAGTTCAGAAGTACATGTCCCACTAGGGGATGCTAGATTGGTAATAACAACATATTGGGGTCTGCATACAGGAGAAAGAGATTGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGGAAAAGGAGATATAGCACACAAGTAGACCCCAACCTAGCAGACCAACTGATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAGTGCCATATTAGGACATATAGTTAGTCCTAGTTGTGAATATCAAGCAGGACATAACAAGGTAGGATCTCTACAGTACTTGGCATTAGCAGCATTAATAACACCAAAAAGGAGAAAGCCCCCTTTGCCTAGTGTTGCAAAGCTGACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCACCGAGGGAGCCATATCAGGAATGGACACTAG +MN692145,vpr,5547,5841,5558,5850,forward,0.4170684667309551,MEQAPEDQGPPREPYQEWTLELLEELKNEAVRHFPRMWLHGLGQHIYDTYGDTWTGVEAIIRILQQLLFIHFRIGCQHSRIGIIRQRRTRNGANRS,MEQAPEDQGPPREPYQEWTLELLEELKNEAVRHFPRMWLHGLGQHIYDTYGDTWTGVEAIIRILQQLLFIHFRIGCQHSRIGIIRQRRTRNGANRS*T,ATGGAACAAGCCCCAGAAGACCAAGGGCCACCGAGGGAGCCATATCAGGAATGGACACTAGAGCTTTTAGAGGAGCTTAAGAATGAAGCTGTTAGACATTTTCCTAGGATGTGGCTCCATGGCTTAGGGCAACATATCTATGACACTTATGGGGATACTTGGACAGGAGTGGAAGCCATAATAAGAATTCTGCAACAACTGCTGTTCATTCATTTCAGGATTGGGTGTCAACATAGCAGAATAGGCATTATTCGCCAGAGGAGAACAAGAAATGGAGCCAATAGATCCTAGACT +MN692145,tat_exon1,5818,6037,5830,6045,forward,0.31992687385740404,MEPIDPRLEPWKHPGSQPKTACTSCYCKKCCFHCQVCFMTKALGISYGRKKRRQRRRASQDSQTHQVSLSKQ,MEPIDPRLEPWKHPGSQPKTACTSCYCKKCCFHCQVCFMTKALGISYGRKKRRQRRRASQDSQTHQVSLSKQ*,ATGGAGCCAATAGATCCTAGACTAGAGCCCTGGAAGCATCCAGGAAGCCAGCCTAAGACTGCTTGTACCTCTTGCTATTGTAAAAAGTGTTGCTTTCATTGTCAAGTCTGTTTCATGACAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTTCTCAAGACAGTCAGACTCATCAAGTTTCTCTATCAAAGCAGTAA +MN692145,rev_exon1,5957,6038,5969,6045,forward,0.4557731262660365,MAGRSGDSDEELLKTVRLIKFLYQSSK,MAGRSGDSDEELLKTVRLIKFLYQSSK,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTTCTCAAGACAGTCAGACTCATCAAGTTTCTCTATCAAAGCAGTAAG +MN692145,vpu,6049,6298,6061,6310,forward,0.48354327509142636,MNSLQISAIVAIVVAIILAIVVWSIVFIEYRKILRQRKIDRLIDRIRERAEDSGNESEGDQEELSTALMEMGHHAPWDVDDL,MNSLQISAIVAIVVAIILAIVVWSIVFIEYRKILRQRKIDRLIDRIRERAEDSGNESEGDQEELSTALMEMGHHAPWDVDDL*,ATGAACTCTTTACAAATATCAGCAATAGTAGCAATAGTAGTAGCAATAATACTAGCAATAGTTGTGTGGTCTATAGTATTCATAGAATATAGGAAAATATTAAGACAAAGAAAAATAGATAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGGGATCAGGAAGAACTATCAACAGCACTTATGGAGATGGGGCACCATGCTCCTTGGGATGTTGATGATCTGTAG +MN692145,env,6212,8783,6224,8795,forward,0.4452133553553136,MRVKGIRKNYQQHLWRWGTMLLGMLMICSAAGNLWVTVYYGVPVWKEATTTLFCASDAKAYGTEVHNVWATHACVPTDPNPQEVRLENVTENFNMWRNPMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDLGQESTNNNITGSIEKGEMKNCSFNISSSKGSKGHKEYASFYKLDVVPIGNNKTNGNYSSYRLISCNTSVITQACPKVSFEPIPIHFCAPAGYAILKCNDKQFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSANFTDNAKTIIVQLNQSVEITCTRPGNNTIRGVHMGPGKAFYAGAITGDIRKAHCIINKAKWNSTLRLVVAKLSEQFRNKTINFTQPSGGDPEIVTHSFNCGGEFFYCNTTKLFNSTWNATHMINGTWNDTEGNITLPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGGKTNESNTTEIFRPGGGDMRDNWRSELYKYKVVRIEPLGVAPTKAKRRVVQREKRAVGIGALFLGFLGAAGSTMGATSMALTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGVKQLQARVLALERYLKDQQLLGFWGCSGKLICTTDVPWNASWSNKSLGQIWENMTWMEWEREIDNYTSLIYTLITESQIQQEQNEKELLELDKWANLWNWFGITNWLWYIKIFIMIVGGLVGLRIVFAVLSIVNRVRQGYSPLSFQTRFPAPRGPDRPEGIEEEGGERDRDRSAPLVKGFLALIWVDLRSLCLFSYHRLRDLLLIITRIVELLGRRGWEVLKYLWSLLQYWTQELKNSAVSLLNATAIAVAEGTDRIIEVLQRVFRAILHIPTRIRQGFERALL,MRVKGIRKNYQQHLWRWGTMLLGMLMICSAAGNLWVTVYYGVPVWKEATTTLFCASDAKAYGTEVHNVWATHACVPTDPNPQEVRLENVTENFNMWRNPMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDLGQESTNNNITGSIEKGEMKNCSFNISSSKGSKGHKEYASFYKLDVVPIGNNKTNGNYSSYRLISCNTSVITQACPKVSFEPIPIHFCAPAGYAILKCNDKQFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSANFTDNAKTIIVQLNQSVEITCTRPGNNTIRGVHMGPGKAFYAGAITGDIRKAHCIINKAKWNSTLRLVVAKLSEQFRNKTINFTQPSGGDPEIVTHSFNCGGEFFYCNTTKLFNSTWNATHMINGTWNDTEGNITLPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGGKTNESNTTEIFRPGGGDMRDNWRSELYKYKVVRIEPLGVAPTKAKRRVVQREKRAVGIGALFLGFLGAAGSTMGATSMALTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGVKQLQARVLALERYLKDQQLLGFWGCSGKLICTTDVPWNASWSNKSLGQIWENMTWMEWEREIDNYTSLIYTLITESQIQQEQNEKELLELDKWANLWNWFGITNWLWYIKIFIMIVGGLVGLRIVFAVLSIVNRVRQGYSPLSFQTRFPAPRGPDRPEGIEEEGGERDRDRSAPLVKGFLALIWVDLRSLCLFSYHRLRDLLLIITRIVELLGRRGWEVLKYLWSLLQYWTQELKNSAVSLLNATAIAVAEGTDRIIEVLQRVFRAILHIPTRIRQGFERALL*,ATGAGAGTGAAGGGGATCAGGAAGAACTATCAACAGCACTTATGGAGATGGGGCACCATGCTCCTTGGGATGTTGATGATCTGTAGTGCTGCAGGCAATTTGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAAAGAAGCAACCACCACTCTATTTTGTGCATCAGATGCTAAAGCATATGGTACAGAGGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTGAGATTGGAAAATGTGACAGAAAATTTTAATATGTGGAGAAATCCAATGGTAGAACAGATGCATGAGGATATAATTAGTTTATGGGATCAAAGCCTAAAGCCATGTGTAAAGTTGACCCCACTCTGTGTCACTTTAAATTGCACTGATTTGGGACAGGAGAGTACCAATAATAATATCACAGGAAGTATAGAGAAAGGAGAAATGAAAAACTGCTCTTTCAATATCTCCTCAAGCAAAGGAAGTAAGGGGCATAAAGAATATGCATCTTTTTATAAACTTGATGTAGTACCAATAGGTAATAATAAGACTAATGGTAATTATTCTAGCTATAGGTTGATAAGTTGTAATACCTCAGTCATTACACAGGCCTGTCCAAAAGTATCATTTGAGCCAATTCCCATACATTTTTGTGCCCCGGCTGGGTATGCGATTCTAAAGTGTAATGATAAACAATTCAATGGAACAGGACCATGTACAAATGTCAGCACAGTACAGTGTACACATGGAATTAGGCCAGTAGTATCAACTCAACTGCTGTTAAATGGTAGTCTAGCAGAAGAAGAGGTAGTAATTAGATCTGCCAATTTCACGGACAATGCTAAAACCATAATAGTACAGCTGAACCAATCTGTAGAAATTACTTGTACAAGACCCGGTAACAATACAATAAGAGGGGTTCACATGGGACCAGGGAAGGCATTTTATGCAGGAGCAATAACAGGAGATATAAGAAAAGCACATTGTATCATTAATAAAGCAAAATGGAACAGTACTTTAAGACTGGTAGTTGCAAAATTAAGTGAGCAATTTAGGAATAAAACAATAAACTTTACTCAACCCTCAGGAGGGGACCCAGAAATTGTAACACACAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAATACAACAAAACTGTTTAATAGTACTTGGAATGCAACACACATGATTAATGGTACTTGGAATGATACTGAGGGAAATATCACCCTCCCATGCAGAATAAAACAAATTATAAACATGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCATCAGAGGACAAATTAGATGTTCATCCAATATTACAGGGTTGCTATTAACAAGAGATGGTGGTAAGACTAACGAGAGCAACACCACCGAGATCTTTAGACCTGGAGGAGGAGATATGAGAGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAGAATTGAACCATTAGGGGTAGCACCCACCAAGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTCTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAACGTCGATGGCGTTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAACAGCAGAACAATTTGCTGAGAGCTATTGAGGCGCAACAACATTTGTTGCAACTCACAGTCTGGGGCGTCAAGCAGCTCCAGGCAAGAGTCCTGGCTCTGGAAAGATACCTAAAGGATCAACAGCTCCTGGGGTTTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGATGTGCCTTGGAATGCTAGTTGGAGTAATAAATCTCTGGGACAAATTTGGGAGAACATGACCTGGATGGAGTGGGAAAGAGAAATTGATAATTACACAAGCTTAATATACACTTTAATTACAGAATCGCAGATCCAACAAGAACAGAATGAAAAAGAATTGTTGGAATTGGATAAATGGGCAAATTTGTGGAATTGGTTTGGCATAACAAACTGGCTGTGGTACATAAAAATATTTATAATGATAGTAGGAGGCTTAGTAGGTTTAAGAATAGTTTTTGCTGTACTTTCTATAGTGAATAGAGTTAGGCAGGGATACTCACCATTATCGTTTCAGACCCGCTTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGCTCCATTAGTGAAAGGATTCTTAGCACTTATCTGGGTCGATCTACGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATAATAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGTCCTCAAATACTTGTGGAGTCTCCTACAGTATTGGACACAGGAACTAAAGAATAGTGCTGTTAGCTTGCTCAATGCCACAGCCATAGCAGTAGCTGAGGGGACAGATAGGATTATAGAAGTATTACAAAGAGTTTTTAGAGCTATCCTCCATATCCCTACAAGAATAAGACAGGGCTTTGAAAGGGCTTTGCTATAA +MN692145,tat_exon2,8364,8460,8376,8469,forward,0.439759036144578,RPASQPRGDPTGPKESKKKVERETETDPLH,RPASQPRGDPTGPKESKKKVERETETDPLH**,AGACCCGCTTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGCTCCATTAGTGA +MN692145,rev_exon2,8365,8641,8377,8653,forward,0.29843322556577967,DPLPSPEGTRQARRNRRRRWRERQRQIRSISERILSTYLGRSTEPVPLQLPPLERLTLDNNEDCGTSGTQGVGSPQILVESPTVLDTGTKE,DPLPSPEGTRQARRNRRRRWRERQRQIRSISERILSTYLGRSTEPVPLQLPPLERLTLDNNEDCGTSGTQGVGSPQILVESPTVLDTGTKE*,GACCCGCTTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGCTCCATTAGTGAAAGGATTCTTAGCACTTATCTGGGTCGATCTACGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATAATAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGTCCTCAAATACTTGTGGAGTCTCCTACAGTATTGGACACAGGAACTAAAGAATAG +MN692145,nef,8784,9576,8796,9417,forward,0.38480154888673335,MGGKWSKSSLVGWPNVRERMRRAEPAADGVGAVSRDLERHGAITSSNTATNNADCAWLEAQKEEEVGFPVTPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIHSQKRQDILDLWIYHTQGYFPDWQNYTPGPGVRYPLTFGWCFKLVPVEPTDRENDRLLHPASLQGMEDPEGEVLEWRFDSRLAFHHMARELHPEYYKNC,MGGKWSKSSLVGWPNVRERMRRAEPAADGVGAVSRDLERHGAITSSNTATNNADCAWLEAQKEEEVGFPVTPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIHSQKRQDILDLWIYHTQGYFPDWQNYTPGPGVRYPLTFGWCFKLVPVEPTDRENDRLLHPASLQGMEDPEGEVLEWRFDSRLAFHHMARELHPEYYKNC*HRAFYKGLSAGDFPGEAWPGRGRGVASPQMLHISSCFCLYWVSLVRPDLSLGALWLTREPTA*,ATGGGGGGCAAGTGGTCAAAAAGTAGTTTGGTTGGATGGCCTAATGTAAGGGAAAGAATGAGACGAGCTGAGCCAGCAGCAGATGGGGTGGGAGCAGTATCTCGAGACTTGGAAAGACATGGAGCAATCACAAGTAGTAATACAGCAACTAACAATGCTGATTGTGCCTGGCTAGAAGCACAAAAGGAGGAGGAGGTGGGTTTTCCAGTCACACCTCAGGTACCTTTAAGACCAATGACTTACAAGGCAGCTGTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCACTCCCAAAAAAGACAAGATATTCTTGATCTATGGATCTACCACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGGTCAGATATCCACTGACCTTTGGATGGTGCTTCAAGCTAGTACCAGTTGAGCCCACTGACAGAGAGAATGACAGATTGCTGCACCCTGCAAGCCTGCAGGGGATGGAAGACCCGGAGGGAGAAGTGTTAGAGTGGAGGTTTGACAGCCGCCTGGCATTTCATCACATGGCCCGAGAGCTGCATCCGGAGTACTACAAGAACTGCTGACATCGAGCTTTCTACAAGGGACTTTCCGCTGGGGACTTTCCAGGGGAGGCGTGGCCTGGGCGGGGCAGGGGAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTCTGCCTGTACTGGGTCTCTCTGGTTAGACCAGATCTGAGCCTGGGAGCTCTCTGGCTGACTAGGGAACCCACTGCTTAA diff --git a/tests/expected-results-single/orfs.json b/tests/expected-results-single/orfs.json index 633cbe1..63b2b80 100644 --- a/tests/expected-results-single/orfs.json +++ b/tests/expected-results-single/orfs.json @@ -7,7 +7,7 @@ "subtype_start": 789, "subtype_end": 2292, "orientation": "forward", - "distance": 0.15900000000000003, + "distance": 0.20410783055198978, "protein": "MGARASVLSGGKLDQWEKIRLRPGGKKKYQLKHIVWASKELERFAVNPGLLETTEGCRQILGQLQPSLQTGSEELKSLYNTVATLYCVHQRIDVKDTKEALDKIEEEQNKSKEKAKQAAADTGNSNQVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKESFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPGATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRSQRKIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETTTPSQKQESTGKELYPPLASLRSLFGNDPSSQ", "aminoacids": "MGARASVLSGGKLDQWEKIRLRPGGKKKYQLKHIVWASKELERFAVNPGLLETTEGCRQILGQLQPSLQTGSEELKSLYNTVATLYCVHQRIDVKDTKEALDKIEEEQNKSKEKAKQAAADTGNSNQVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKESFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPGATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRSQRKIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETTTPSQKQESTGKELYPPLASLRSLFGNDPSSQ*R*", "nucleotides": "ATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAAAATTAGATCAATGGGAGAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATCAATTAAAACATATAGTATGGGCAAGCAAGGAACTAGAACGATTTGCAGTTAATCCTGGCCTGTTAGAAACAACAGAAGGATGTAGACAAATACTGGGACAGCTACAACCATCTCTTCAGACAGGATCAGAAGAACTTAAATCATTATATAATACAGTAGCAACCCTCTATTGTGTGCATCAAAGGATAGATGTAAAAGACACCAAGGAAGCATTAGATAAGATAGAGGAAGAGCAAAACAAGAGTAAGGAAAAAGCAAAACAAGCAGCAGCTGACACAGGAAACAGCAACCAGGTCAGCCAAAATTACCCTATAGTGCAGAACCTTCAGGGCCAAATGGTACACCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAATAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAATACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGAGTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACCACTAGTACCCTTCAGGAACAAATAGGATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGGATGTATAGTCCTACCAGCATTCTGGATATAAGACAAGGACCAAAAGAATCCTTTAGAGATTATGTAGACCGGTTCTACAAAACTCTAAGAGCTGAGCAAGCCTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATTCAAACCCAGATTGTAAGACTATCTTAAAAGCATTGGGACCAGGAGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCCGGCCATAAAGCAAGAGTCTTGGCTGAAGCAATGAGCCAAGTAACAAATTCAGCTACCATAATGATGCAGAGAGGCAATTTTAGGAGCCAAAGGAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAGGGGCATATAGCCAGAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGATTGTACTGAAAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGGAGGCCAGGAAATTTCCTTCAGAGCAGGCCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAACAACTCCCTCTCAGAAGCAGGAGTCGACAGGCAAGGAACTGTATCCTCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAG" @@ -19,7 +19,7 @@ "subtype_start": 2084, "subtype_end": 5096, "orientation": "forward", - "distance": 0.10618145563310066, + "distance": 0.14621890274040306, "protein": "FFRENLAFPQGEARKFPSEQARANSPTRRELQVWGRDNNSLSEAGVDRQGTVSSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQISIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKESWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARVRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGASNRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLINKEKVYLAWVPAHKGIGGNEQVDKLVSTGIRKVLFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAREIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKVKIIRDYGKQMAGDDCVASRQDED", "aminoacids": "FFRENLAFPQGEARKFPSEQARANSPTRRELQVWGRDNNSLSEAGVDRQGTVSSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQISIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKESWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARVRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGASNRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLINKEKVYLAWVPAHKGIGGNEQVDKLVSTGIRKVLFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAREIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKVKIIRDYGKQMAGDDCVASRQDED*", "nucleotides": "TTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGGAGGCCAGGAAATTTCCTTCAGAGCAGGCCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAACAACTCCCTCTCAGAAGCAGGAGTCGACAGGCAAGGAACTGTATCCTCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTACCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATTAAAGTAAGACAGTATGATCAGATATCCATAGAAATCTGTGGACATAAAGCTATAGGGACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAAATTGGTTGTACTTTAAATTTCCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAACAGAAATTTGTACAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGACAGCACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAAAGAACTCAAGATTTCTGGGAAGTTCAATTAGGGATACCACATCCAGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATGAGGATTTCAGGAAGTATACTGCATTTACCATACCTAGTATAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAATGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGACATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAATTGAGACAACATCTGTTGAGGTGGGGATTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAGAAAAAGAAAGCTGGACTGTCAATGACATACAAAAGTTAGTGGGTAAATTGAATTGGGCAAGTCAGATTTATGCAGGGATCAAAGTAAAACAATTATGTAAACTTCTTAGGGGAGCCAAAGCACTAACAGAAGTAATACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAGATTTTAAAAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAGCAGGGGCAAGGCCAATGGACATATCAGATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAGTGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAGCCACTGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAGGTTACCCATACAAAAAGAAACATGGGAAACATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCATCTAATAGAGAGACTAAATTAGGAAAAGCAGGATATGTTACTGACAGAGGAAGACAGAAAGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAGTTACAAGCAATTCATCTAGCTTTGCAGGATTCAGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATAAAAGTGAATCAGAGTTAGTCAATCAAATAATAGAACAGTTAATAAACAAGGAAAAGGTCTACTTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTTAGTACTGGAATTAGAAAAGTACTATTTTTAGATGGAATAGATAAGGCCCAAGAAGAACATGAGAAATACCACAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTGGTAGCAAGAGAAATAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGAGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAGCTAGATTGTACACATTTAGAAGGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAAACAGGACAGGAAACAGCATACTTTCTCTTAAAATTAGCAGGAAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGTAATTTCACTAGTACTACAGTTAAGGCCGCCTGTTGGTGGGCGGGGATCAAGCAGGAGTTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGACCAGGCTGAACATCTTAAAACAGCAGTACAAATGGCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTGATACAAGACAATAGTGACATAAAAGTAGTGCCAAGAAGAAAAGTAAAAATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG" @@ -31,7 +31,7 @@ "subtype_start": 5040, "subtype_end": 5619, "orientation": "forward", - "distance": 0.21875, + "distance": 0.2608047690014903, "protein": "MENRWQVMIVWQVDRMRIRTWKSLVKHHMYVSGKAKGWFYRHHYESHHPRISSEVHVPLGDARLVITTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPNLADQLIHLYYFDCFSESAIRSAILGHIVSPSCEYQAGHNKVGSLQYLALAALITPKRRKPPLPSVAKLTEDRWNKPQKTKGHRGSHIRNGH", "aminoacids": "MENRWQVMIVWQVDRMRIRTWKSLVKHHMYVSGKAKGWFYRHHYESHHPRISSEVHVPLGDARLVITTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPNLADQLIHLYYFDCFSESAIRSAILGHIVSPSCEYQAGHNKVGSLQYLALAALITPKRRKPPLPSVAKLTEDRWNKPQKTKGHRGSHIRNGH*", "nucleotides": "ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAAAAGTTTAGTAAAACACCATATGTATGTTTCAGGGAAAGCTAAGGGATGGTTTTATAGACATCACTATGAAAGCCATCATCCAAGAATAAGTTCAGAAGTACATGTCCCACTAGGGGATGCTAGATTGGTAATAACAACATATTGGGGTCTGCATACAGGAGAAAGAGATTGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGGAAAAGGAGATATAGCACACAAGTAGACCCCAACCTAGCAGACCAACTGATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAGTGCCATATTAGGACATATAGTTAGTCCTAGTTGTGAATATCAAGCAGGACATAACAAGGTAGGATCTCTACAGTACTTGGCATTAGCAGCATTAATAACACCAAAAAGGAGAAAGCCCCCTTTGCCTAGTGTTGCAAAGCTGACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCACCGAGGGAGCCATATCAGGAATGGACACTAG" @@ -43,7 +43,7 @@ "subtype_start": 5558, "subtype_end": 5850, "orientation": "forward", - "distance": 0.44358974358974423, + "distance": 0.4170684667309551, "protein": "MEQAPEDQGPPREPYQEWTLELLEELKNEAVRHFPRMWLHGLGQHIYDTYGDTWTGVEAIIRILQQLLFIHFRIGCQHSRIGIIRQRRTRNGANRS", "aminoacids": "MEQAPEDQGPPREPYQEWTLELLEELKNEAVRHFPRMWLHGLGQHIYDTYGDTWTGVEAIIRILQQLLFIHFRIGCQHSRIGIIRQRRTRNGANRS*T", "nucleotides": "ATGGAACAAGCCCCAGAAGACCAAGGGCCACCGAGGGAGCCATATCAGGAATGGACACTAGAGCTTTTAGAGGAGCTTAAGAATGAAGCTGTTAGACATTTTCCTAGGATGTGGCTCCATGGCTTAGGGCAACATATCTATGACACTTATGGGGATACTTGGACAGGAGTGGAAGCCATAATAAGAATTCTGCAACAACTGCTGTTCATTCATTTCAGGATTGGGTGTCAACATAGCAGAATAGGCATTATTCGCCAGAGGAGAACAAGAAATGGAGCCAATAGATCCTAGACT" @@ -55,7 +55,7 @@ "subtype_start": 5830, "subtype_end": 6045, "orientation": "forward", - "distance": 0.29166666666666674, + "distance": 0.31992687385740404, "protein": "MEPIDPRLEPWKHPGSQPKTACTSCYCKKCCFHCQVCFMTKALGISYGRKKRRQRRRASQDSQTHQVSLSKQ", "aminoacids": "MEPIDPRLEPWKHPGSQPKTACTSCYCKKCCFHCQVCFMTKALGISYGRKKRRQRRRASQDSQTHQVSLSKQ*", "nucleotides": "ATGGAGCCAATAGATCCTAGACTAGAGCCCTGGAAGCATCCAGGAAGCCAGCCTAAGACTGCTTGTACCTCTTGCTATTGTAAAAAGTGTTGCTTTCATTGTCAAGTCTGTTTCATGACAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTTCTCAAGACAGTCAGACTCATCAAGTTTCTCTATCAAAGCAGTAA" @@ -67,7 +67,7 @@ "subtype_start": 5969, "subtype_end": 6045, "orientation": "forward", - "distance": 0.5192307692307692, + "distance": 0.4557731262660365, "protein": "MAGRSGDSDEELLKTVRLIKFLYQSSK", "aminoacids": "MAGRSGDSDEELLKTVRLIKFLYQSSK", "nucleotides": "ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTTCTCAAGACAGTCAGACTCATCAAGTTTCTCTATCAAAGCAGTAAG" @@ -79,7 +79,7 @@ "subtype_start": 6061, "subtype_end": 6310, "orientation": "forward", - "distance": 0.5804878048780489, + "distance": 0.48354327509142636, "protein": "MNSLQISAIVAIVVAIILAIVVWSIVFIEYRKILRQRKIDRLIDRIRERAEDSGNESEGDQEELSTALMEMGHHAPWDVDDL", "aminoacids": "MNSLQISAIVAIVVAIILAIVVWSIVFIEYRKILRQRKIDRLIDRIRERAEDSGNESEGDQEELSTALMEMGHHAPWDVDDL*", "nucleotides": "ATGAACTCTTTACAAATATCAGCAATAGTAGCAATAGTAGTAGCAATAATACTAGCAATAGTTGTGTGGTCTATAGTATTCATAGAATATAGGAAAATATTAAGACAAAGAAAAATAGATAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGGGATCAGGAAGAACTATCAACAGCACTTATGGAGATGGGGCACCATGCTCCTTGGGATGTTGATGATCTGTAG" @@ -91,7 +91,7 @@ "subtype_start": 6224, "subtype_end": 8795, "orientation": "forward", - "distance": 0.4975467289719626, + "distance": 0.4452133553553136, "protein": "MRVKGIRKNYQQHLWRWGTMLLGMLMICSAAGNLWVTVYYGVPVWKEATTTLFCASDAKAYGTEVHNVWATHACVPTDPNPQEVRLENVTENFNMWRNPMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDLGQESTNNNITGSIEKGEMKNCSFNISSSKGSKGHKEYASFYKLDVVPIGNNKTNGNYSSYRLISCNTSVITQACPKVSFEPIPIHFCAPAGYAILKCNDKQFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSANFTDNAKTIIVQLNQSVEITCTRPGNNTIRGVHMGPGKAFYAGAITGDIRKAHCIINKAKWNSTLRLVVAKLSEQFRNKTINFTQPSGGDPEIVTHSFNCGGEFFYCNTTKLFNSTWNATHMINGTWNDTEGNITLPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGGKTNESNTTEIFRPGGGDMRDNWRSELYKYKVVRIEPLGVAPTKAKRRVVQREKRAVGIGALFLGFLGAAGSTMGATSMALTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGVKQLQARVLALERYLKDQQLLGFWGCSGKLICTTDVPWNASWSNKSLGQIWENMTWMEWEREIDNYTSLIYTLITESQIQQEQNEKELLELDKWANLWNWFGITNWLWYIKIFIMIVGGLVGLRIVFAVLSIVNRVRQGYSPLSFQTRFPAPRGPDRPEGIEEEGGERDRDRSAPLVKGFLALIWVDLRSLCLFSYHRLRDLLLIITRIVELLGRRGWEVLKYLWSLLQYWTQELKNSAVSLLNATAIAVAEGTDRIIEVLQRVFRAILHIPTRIRQGFERALL", "aminoacids": "MRVKGIRKNYQQHLWRWGTMLLGMLMICSAAGNLWVTVYYGVPVWKEATTTLFCASDAKAYGTEVHNVWATHACVPTDPNPQEVRLENVTENFNMWRNPMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDLGQESTNNNITGSIEKGEMKNCSFNISSSKGSKGHKEYASFYKLDVVPIGNNKTNGNYSSYRLISCNTSVITQACPKVSFEPIPIHFCAPAGYAILKCNDKQFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSANFTDNAKTIIVQLNQSVEITCTRPGNNTIRGVHMGPGKAFYAGAITGDIRKAHCIINKAKWNSTLRLVVAKLSEQFRNKTINFTQPSGGDPEIVTHSFNCGGEFFYCNTTKLFNSTWNATHMINGTWNDTEGNITLPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGGKTNESNTTEIFRPGGGDMRDNWRSELYKYKVVRIEPLGVAPTKAKRRVVQREKRAVGIGALFLGFLGAAGSTMGATSMALTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGVKQLQARVLALERYLKDQQLLGFWGCSGKLICTTDVPWNASWSNKSLGQIWENMTWMEWEREIDNYTSLIYTLITESQIQQEQNEKELLELDKWANLWNWFGITNWLWYIKIFIMIVGGLVGLRIVFAVLSIVNRVRQGYSPLSFQTRFPAPRGPDRPEGIEEEGGERDRDRSAPLVKGFLALIWVDLRSLCLFSYHRLRDLLLIITRIVELLGRRGWEVLKYLWSLLQYWTQELKNSAVSLLNATAIAVAEGTDRIIEVLQRVFRAILHIPTRIRQGFERALL*", "nucleotides": "ATGAGAGTGAAGGGGATCAGGAAGAACTATCAACAGCACTTATGGAGATGGGGCACCATGCTCCTTGGGATGTTGATGATCTGTAGTGCTGCAGGCAATTTGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAAAGAAGCAACCACCACTCTATTTTGTGCATCAGATGCTAAAGCATATGGTACAGAGGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTGAGATTGGAAAATGTGACAGAAAATTTTAATATGTGGAGAAATCCAATGGTAGAACAGATGCATGAGGATATAATTAGTTTATGGGATCAAAGCCTAAAGCCATGTGTAAAGTTGACCCCACTCTGTGTCACTTTAAATTGCACTGATTTGGGACAGGAGAGTACCAATAATAATATCACAGGAAGTATAGAGAAAGGAGAAATGAAAAACTGCTCTTTCAATATCTCCTCAAGCAAAGGAAGTAAGGGGCATAAAGAATATGCATCTTTTTATAAACTTGATGTAGTACCAATAGGTAATAATAAGACTAATGGTAATTATTCTAGCTATAGGTTGATAAGTTGTAATACCTCAGTCATTACACAGGCCTGTCCAAAAGTATCATTTGAGCCAATTCCCATACATTTTTGTGCCCCGGCTGGGTATGCGATTCTAAAGTGTAATGATAAACAATTCAATGGAACAGGACCATGTACAAATGTCAGCACAGTACAGTGTACACATGGAATTAGGCCAGTAGTATCAACTCAACTGCTGTTAAATGGTAGTCTAGCAGAAGAAGAGGTAGTAATTAGATCTGCCAATTTCACGGACAATGCTAAAACCATAATAGTACAGCTGAACCAATCTGTAGAAATTACTTGTACAAGACCCGGTAACAATACAATAAGAGGGGTTCACATGGGACCAGGGAAGGCATTTTATGCAGGAGCAATAACAGGAGATATAAGAAAAGCACATTGTATCATTAATAAAGCAAAATGGAACAGTACTTTAAGACTGGTAGTTGCAAAATTAAGTGAGCAATTTAGGAATAAAACAATAAACTTTACTCAACCCTCAGGAGGGGACCCAGAAATTGTAACACACAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAATACAACAAAACTGTTTAATAGTACTTGGAATGCAACACACATGATTAATGGTACTTGGAATGATACTGAGGGAAATATCACCCTCCCATGCAGAATAAAACAAATTATAAACATGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCATCAGAGGACAAATTAGATGTTCATCCAATATTACAGGGTTGCTATTAACAAGAGATGGTGGTAAGACTAACGAGAGCAACACCACCGAGATCTTTAGACCTGGAGGAGGAGATATGAGAGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAGAATTGAACCATTAGGGGTAGCACCCACCAAGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTCTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAACGTCGATGGCGTTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAACAGCAGAACAATTTGCTGAGAGCTATTGAGGCGCAACAACATTTGTTGCAACTCACAGTCTGGGGCGTCAAGCAGCTCCAGGCAAGAGTCCTGGCTCTGGAAAGATACCTAAAGGATCAACAGCTCCTGGGGTTTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGATGTGCCTTGGAATGCTAGTTGGAGTAATAAATCTCTGGGACAAATTTGGGAGAACATGACCTGGATGGAGTGGGAAAGAGAAATTGATAATTACACAAGCTTAATATACACTTTAATTACAGAATCGCAGATCCAACAAGAACAGAATGAAAAAGAATTGTTGGAATTGGATAAATGGGCAAATTTGTGGAATTGGTTTGGCATAACAAACTGGCTGTGGTACATAAAAATATTTATAATGATAGTAGGAGGCTTAGTAGGTTTAAGAATAGTTTTTGCTGTACTTTCTATAGTGAATAGAGTTAGGCAGGGATACTCACCATTATCGTTTCAGACCCGCTTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGCTCCATTAGTGAAAGGATTCTTAGCACTTATCTGGGTCGATCTACGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATAATAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGTCCTCAAATACTTGTGGAGTCTCCTACAGTATTGGACACAGGAACTAAAGAATAGTGCTGTTAGCTTGCTCAATGCCACAGCCATAGCAGTAGCTGAGGGGACAGATAGGATTATAGAAGTATTACAAAGAGTTTTTAGAGCTATCCTCCATATCCCTACAAGAATAAGACAGGGCTTTGAAAGGGCTTTGCTATAA" @@ -103,7 +103,7 @@ "subtype_start": 8376, "subtype_end": 8469, "orientation": "forward", - "distance": 0.4866666666666659, + "distance": 0.439759036144578, "protein": "RPASQPRGDPTGPKESKKKVERETETDPLH", "aminoacids": "RPASQPRGDPTGPKESKKKVERETETDPLH**", "nucleotides": "AGACCCGCTTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGCTCCATTAGTGA" @@ -115,7 +115,7 @@ "subtype_start": 8377, "subtype_end": 8653, "orientation": "forward", - "distance": 0.2637362637362637, + "distance": 0.29843322556577967, "protein": "DPLPSPEGTRQARRNRRRRWRERQRQIRSISERILSTYLGRSTEPVPLQLPPLERLTLDNNEDCGTSGTQGVGSPQILVESPTVLDTGTKE", "aminoacids": "DPLPSPEGTRQARRNRRRRWRERQRQIRSISERILSTYLGRSTEPVPLQLPPLERLTLDNNEDCGTSGTQGVGSPQILVESPTVLDTGTKE*", "nucleotides": "GACCCGCTTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGCTCCATTAGTGAAAGGATTCTTAGCACTTATCTGGGTCGATCTACGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATAATAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGTCCTCAAATACTTGTGGAGTCTCCTACAGTATTGGACACAGGAACTAAAGAATAG" @@ -127,7 +127,7 @@ "subtype_start": 8796, "subtype_end": 9417, "orientation": "forward", - "distance": 0.3878048780487735, + "distance": 0.38480154888673335, "protein": "MGGKWSKSSLVGWPNVRERMRRAEPAADGVGAVSRDLERHGAITSSNTATNNADCAWLEAQKEEEVGFPVTPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIHSQKRQDILDLWIYHTQGYFPDWQNYTPGPGVRYPLTFGWCFKLVPVEPTDRENDRLLHPASLQGMEDPEGEVLEWRFDSRLAFHHMARELHPEYYKNC", "aminoacids": "MGGKWSKSSLVGWPNVRERMRRAEPAADGVGAVSRDLERHGAITSSNTATNNADCAWLEAQKEEEVGFPVTPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIHSQKRQDILDLWIYHTQGYFPDWQNYTPGPGVRYPLTFGWCFKLVPVEPTDRENDRLLHPASLQGMEDPEGEVLEWRFDSRLAFHHMARELHPEYYKNC*HRAFYKGLSAGDFPGEAWPGRGRGVASPQMLHISSCFCLYWVSLVRPDLSLGALWLTREPTA*", "nucleotides": "ATGGGGGGCAAGTGGTCAAAAAGTAGTTTGGTTGGATGGCCTAATGTAAGGGAAAGAATGAGACGAGCTGAGCCAGCAGCAGATGGGGTGGGAGCAGTATCTCGAGACTTGGAAAGACATGGAGCAATCACAAGTAGTAATACAGCAACTAACAATGCTGATTGTGCCTGGCTAGAAGCACAAAAGGAGGAGGAGGTGGGTTTTCCAGTCACACCTCAGGTACCTTTAAGACCAATGACTTACAAGGCAGCTGTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCACTCCCAAAAAAGACAAGATATTCTTGATCTATGGATCTACCACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGGTCAGATATCCACTGACCTTTGGATGGTGCTTCAAGCTAGTACCAGTTGAGCCCACTGACAGAGAGAATGACAGATTGCTGCACCCTGCAAGCCTGCAGGGGATGGAAGACCCGGAGGGAGAAGTGTTAGAGTGGAGGTTTGACAGCCGCCTGGCATTTCATCACATGGCCCGAGAGCTGCATCCGGAGTACTACAAGAACTGCTGACATCGAGCTTTCTACAAGGGACTTTCCGCTGGGGACTTTCCAGGGGAGGCGTGGCCTGGGCGGGGCAGGGGAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTCTGCCTGTACTGGGTCTCTCTGGTTAGACCAGATCTGAGCCTGGGAGCTCTCTGGCTGACTAGGGAACCCACTGCTTAA" diff --git a/tests/expected-results-small-csv/orfs.csv b/tests/expected-results-small-csv/orfs.csv index 8cb23c6..c36948a 100644 --- a/tests/expected-results-small-csv/orfs.csv +++ b/tests/expected-results-small-csv/orfs.csv @@ -1,56 +1,56 @@ seqid,name,start,end,subtype_start,subtype_end,orientation,distance,protein,aminoacids,nucleotides -KX505501.1,env,0,1824,6224,8795,forward,1.9898364485981306,MGARASVLSGGELDRWEKIRLRPGGNKRYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPTLKTGSEELKSLYNTIAVLYCVHQKIDVKDTKEALDKIEEEQNKIRKQAQQTAAAGSSSQVSHNYPVVQNHQGQMVYQALSPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPSHKARVLAEAMSQMTNSATVMMQKGNFRNQRKTVKCFNCGKEGHIARNCRAPRKKGCWKCGREGHQMKDCTERQANFVGKIWPSHKGRPGNFLQNRPEPTAPPAESFRFGEETPTRCIRSTTRTADTELFTRDFPLGTFQ,GLSG*TRSEPGSSLAN*GTHCLSLNKACLECFK*CVPVCCVTLVTRDPSDPFSQCGKSLAVAPEQGPESERETRGALSTQDSAC*ARAARGEGRRLVSTPKIF*LAEARRREMGARASVLSGGELDRWEKIRLRPGGNKRYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPTLKTGSEELKSLYNTIAVLYCVHQKIDVKDTKEALDKIEEEQNKIRKQAQQTAAAGSSSQVSHNYPVVQNHQGQMVYQALSPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPSHKARVLAEAMSQMTNSATVMMQKGNFRNQRKTVKCFNCGKEGHIARNCRAPRKKGCWKCGREGHQMKDCTERQANFVGKIWPSHKGRPGNFLQNRPEPTAPPAESFRFGEETPTRCIRSTTRTADTELFTRDFPLGTFQ*,GGTCTCTCTGGTTAGACCAGATCTGAGCCTGGGAGCTCTCTGGCTAACTAGGGAACCCACTGCTTAAGCCTCAATAAAGCTTGCCTTGAGTGCTTCAAGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGGTAACTAGAGATCCCTCAGACCCTTTTAGTCAGTGTGGAAAATCTCTAGCAGTGGCGCCCGAACAGGGACCTGAAAGCGAAAGGGAAACCAGAGGAGCTCTCTCGACGCAGGACTCGGCTTGCTGAGCGCGCGCAGCAAGAGGCGAGGGGCGGCGACTGGTGAGTACGCCGAAAATTTTTTGACTAGCGGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAGAATTGGATAGATGGGAAAAAATTCGGCTAAGGCCAGGAGGAAATAAAAGATATAAACTAAAACATATAGTATGGGCAAGCAGAGAGCTAGAACGATTCGCAGTTAATCCTGGCCTGCTAGAAACATCAGAAGGCTGTAGACAAATACTGGGACAGCTACAACCGACTCTTAAGACAGGATCAGAAGAACTTAAGTCTTTGTATAATACAATAGCAGTCCTCTATTGTGTACATCAAAAAATAGATGTGAAAGACACCAAGGAAGCCTTAGACAAGATAGAAGAAGAGCAAAACAAAATTAGGAAACAAGCACAGCAAACCGCAGCTGCAGGAAGTAGCAGTCAGGTCAGCCACAATTACCCTGTAGTGCAGAATCATCAGGGGCAAATGGTATATCAGGCCCTGTCACCAAGAACTTTAAATGCATGGGTAAAAGTAATAGAGGAAAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGACTTAAACACCATGCTAAATACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATTAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGATGACAAATAATCCACCTATCCCAGTAGGAGAGATTTATAAAAGATGGATAATCCTAGGGTTAAATAAAATAGTAAGAATGTATAGCCCTGTCAGCATTCTGGACATAAGACAAGGACCAAAGGAACCTTTTAGAGACTATGTAGACCGGTTCTATAAAACCCTAAGAGCCGAACAAGCCACACAGGAAGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAGAATGCGAACCCAGATTGTAAAACTATTTTAAAAGCATTAGGACCAGCAGCCACACTAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCCAGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAATGACAAATTCAGCTACAGTAATGATGCAGAAAGGCAATTTTAGGAACCAAAGAAAAACTGTTAAGTGCTTCAATTGTGGCAAAGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGAAAAAAGGGCTGTTGGAAATGTGGAAGGGAAGGACATCAAATGAAAGACTGTACTGAGAGACAGGCTAATTTTGTAGGGAAAATCTGGCCTTCCCACAAGGGAAGGCCGGGGAATTTCCTTCAGAACAGACCAGAGCCAACAGCCCCACCAGCAGAGAGCTTCAGGTTTGGGGAAGAGACACCAACTAGATGCATCCGGAGTACTACAAGGACTGCTGACACTGAGCTTTTCACAAGGGACTTTCCGCTGGGGACTTTCCAGTAG -KX505501.1,gag,336,1824,789,2292,forward,0.3622000000000025,MGARASVLSGGELDRWEKIRLRPGGNKRYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPTLKTGSEELKSLYNTIAVLYCVHQKIDVKDTKEALDKIEEEQNKIRKQAQQTAAAGSSSQVSHNYPVVQNHQGQMVYQALSPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPSHKARVLAEAMSQMTNSATVMMQKGNFRNQRKTVKCFNCGKEGHIARNCRAPRKKGCWKCGREGHQMKDCTERQANFVGKIWPSHKGRPGNFLQNRPEPTAPPAESFRFGEETPTRCIRSTTRTADTELFTRDFPLGTFQ,MGARASVLSGGELDRWEKIRLRPGGNKRYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPTLKTGSEELKSLYNTIAVLYCVHQKIDVKDTKEALDKIEEEQNKIRKQAQQTAAAGSSSQVSHNYPVVQNHQGQMVYQALSPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPSHKARVLAEAMSQMTNSATVMMQKGNFRNQRKTVKCFNCGKEGHIARNCRAPRKKGCWKCGREGHQMKDCTERQANFVGKIWPSHKGRPGNFLQNRPEPTAPPAESFRFGEETPTRCIRSTTRTADTELFTRDFPLGTFQ*,ATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAGAATTGGATAGATGGGAAAAAATTCGGCTAAGGCCAGGAGGAAATAAAAGATATAAACTAAAACATATAGTATGGGCAAGCAGAGAGCTAGAACGATTCGCAGTTAATCCTGGCCTGCTAGAAACATCAGAAGGCTGTAGACAAATACTGGGACAGCTACAACCGACTCTTAAGACAGGATCAGAAGAACTTAAGTCTTTGTATAATACAATAGCAGTCCTCTATTGTGTACATCAAAAAATAGATGTGAAAGACACCAAGGAAGCCTTAGACAAGATAGAAGAAGAGCAAAACAAAATTAGGAAACAAGCACAGCAAACCGCAGCTGCAGGAAGTAGCAGTCAGGTCAGCCACAATTACCCTGTAGTGCAGAATCATCAGGGGCAAATGGTATATCAGGCCCTGTCACCAAGAACTTTAAATGCATGGGTAAAAGTAATAGAGGAAAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGACTTAAACACCATGCTAAATACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATTAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGATGACAAATAATCCACCTATCCCAGTAGGAGAGATTTATAAAAGATGGATAATCCTAGGGTTAAATAAAATAGTAAGAATGTATAGCCCTGTCAGCATTCTGGACATAAGACAAGGACCAAAGGAACCTTTTAGAGACTATGTAGACCGGTTCTATAAAACCCTAAGAGCCGAACAAGCCACACAGGAAGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAGAATGCGAACCCAGATTGTAAAACTATTTTAAAAGCATTAGGACCAGCAGCCACACTAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCCAGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAATGACAAATTCAGCTACAGTAATGATGCAGAAAGGCAATTTTAGGAACCAAAGAAAAACTGTTAAGTGCTTCAATTGTGGCAAAGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGAAAAAAGGGCTGTTGGAAATGTGGAAGGGAAGGACATCAAATGAAAGACTGTACTGAGAGACAGGCTAATTTTGTAGGGAAAATCTGGCCTTCCCACAAGGGAAGGCCGGGGAATTTCCTTCAGAACAGACCAGAGCCAACAGCCCCACCAGCAGAGAGCTTCAGGTTTGGGGAAGAGACACCAACTAGATGCATCCGGAGTACTACAAGGACTGCTGACACTGAGCTTTTCACAAGGGACTTTCCGCTGGGGACTTTCCAGTAG -KX505501.1,vif,1306,1927,5040,5619,forward,2.1463541666666663,MRTQIVKLF,MRTQIVKLF*KH*DQQPH*KK**QHAREWEDPAIKQEFWLKQ*AK*QIQLQ**CRKAILGTKEKLLSASIVAKKGT*PEIAGPLEKRAVGNVEGKDIK*KTVLRDRLIL*GKSGLPTREGRGISFRTDQSQQPHQQRASGLGKRHQLDASGVLQGLLTLSFSQGTFRWGLSSRGVAWAGLGSGEPSDAAYKQLLSACTRSLWLDQI*,ATGCGAACCCAGATTGTAAAACTATTTTAAAAGCATTAGGACCAGCAGCCACACTAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCCAGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAATGACAAATTCAGCTACAGTAATGATGCAGAAAGGCAATTTTAGGAACCAAAGAAAAACTGTTAAGTGCTTCAATTGTGGCAAAGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGAAAAAAGGGCTGTTGGAAATGTGGAAGGGAAGGACATCAAATGAAAGACTGTACTGAGAGACAGGCTAATTTTGTAGGGAAAATCTGGCCTTCCCACAAGGGAAGGCCGGGGAATTTCCTTCAGAACAGACCAGAGCCAACAGCCCCACCAGCAGAGAGCTTCAGGTTTGGGGAAGAGACACCAACTAGATGCATCCGGAGTACTACAAGGACTGCTGACACTGAGCTTTTCACAAGGGACTTTCCGCTGGGGACTTTCCAGTAGGGGCGTGGCCTGGGCGGGACTGGGGAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTCTGCCTGTACGAGGTCTCTCTGGTTAGACCAGATCTGA -KX505501.1,nef,1306,1927,8796,9417,forward,2.1430894308943085,MRTQIVKLF,MRTQIVKLF*KH*DQQPH*KK**QHAREWEDPAIKQEFWLKQ*AK*QIQLQ**CRKAILGTKEKLLSASIVAKKGT*PEIAGPLEKRAVGNVEGKDIK*KTVLRDRLIL*GKSGLPTREGRGISFRTDQSQQPHQQRASGLGKRHQLDASGVLQGLLTLSFSQGTFRWGLSSRGVAWAGLGSGEPSDAAYKQLLSACTRSLWLDQI*,ATGCGAACCCAGATTGTAAAACTATTTTAAAAGCATTAGGACCAGCAGCCACACTAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCCAGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAATGACAAATTCAGCTACAGTAATGATGCAGAAAGGCAATTTTAGGAACCAAAGAAAAACTGTTAAGTGCTTCAATTGTGGCAAAGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGAAAAAAGGGCTGTTGGAAATGTGGAAGGGAAGGACATCAAATGAAAGACTGTACTGAGAGACAGGCTAATTTTGTAGGGAAAATCTGGCCTTCCCACAAGGGAAGGCCGGGGAATTTCCTTCAGAACAGACCAGAGCCAACAGCCCCACCAGCAGAGAGCTTCAGGTTTGGGGAAGAGACACCAACTAGATGCATCCGGAGTACTACAAGGACTGCTGACACTGAGCTTTTCACAAGGGACTTTCCGCTGGGGACTTTCCAGTAGGGGCGTGGCCTGGGCGGGACTGGGGAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTCTGCCTGTACGAGGTCTCTCTGGTTAGACCAGATCTGA -KX505501.1,pol,1628,1748,2084,5096,forward,2.1349950149551358,FCRENLAFPQGKAGEFPSEQTRANSPTSRELQVWGRDTN,FCRENLAFPQGKAGEFPSEQTRANSPTSRELQVWGRDTN*,TTTTGTAGGGAAAATCTGGCCTTCCCACAAGGGAAGGCCGGGGAATTTCCTTCAGAACAGACCAGAGCCAACAGCCCCACCAGCAGAGAGCTTCAGGTTTGGGGAAGAGACACCAACTAG -KX505501.1,tat_exon2,1746,1824,8376,8469,forward,2.12,RCIRSTTRTADTELFTRDFPLGTFQ,RCIRSTTRTADTELFTRDFPLGTFQ*,AGATGCATCCGGAGTACTACAAGGACTGCTGACACTGAGCTTTTCACAAGGGACTTTCCGCTGGGGACTTTCCAGTAG -KX505501.1,vpu,1747,1927,6061,6310,forward,2.098780487804878,DASGVLQGLLTLSFSQGTFRWGLSSRGVAWAGLGSGEPSDAAYKQLLSACTRSLWLDQI,DASGVLQGLLTLSFSQGTFRWGLSSRGVAWAGLGSGEPSDAAYKQLLSACTRSLWLDQI*,GATGCATCCGGAGTACTACAAGGACTGCTGACACTGAGCTTTTCACAAGGGACTTTCCGCTGGGGACTTTCCAGTAGGGGCGTGGCCTGGGCGGGACTGGGGAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTCTGCCTGTACGAGGTCTCTCTGGTTAGACCAGATCTGA -KX505501.1,rev_exon2,1747,1927,8377,8653,forward,1.9802197802197803,DASGVLQGLLTLSFSQGTFRWGLSSRGVAWAGLGSGEPSDAAYKQLLSACTRSLWLDQI,DASGVLQGLLTLSFSQGTFRWGLSSRGVAWAGLGSGEPSDAAYKQLLSACTRSLWLDQI*,GATGCATCCGGAGTACTACAAGGACTGCTGACACTGAGCTTTTCACAAGGGACTTTCCGCTGGGGACTTTCCAGTAGGGGCGTGGCCTGGGCGGGACTGGGGAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTCTGCCTGTACGAGGTCTCTCTGGTTAGACCAGATCTGA -KX505501.1,vpr,1748,1751,5558,5850,forward,2.1884615384615382,M,M,ATG -KX505501.1,tat_exon1,1748,1751,5830,6045,forward,2.1875,M,M,ATG -KX505501.1,rev_exon1,1748,1751,5969,6045,forward,2.1653846153846152,M,M,ATG -MN691959,gag,639,2142,789,2292,forward,0.05400000000000005,MGARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALEKIEEEQNKSKKKAQQAAADTGHSNQISQNYPIVQNIQGQVVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNXXXPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRNQRKIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKECTERQANFLGKIWPSYKGRPGNFLQSRPEPTAPPEESFRSGVETTTPSQKQEPIDKELYPLTSLRSLFGNDPSSQ,MGARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALEKIEEEQNKSKKKAQQAAADTGHSNQISQNYPIVQNIQGQVVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNXXXPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRNQRKIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKECTERQANFLGKIWPSYKGRPGNFLQSRPEPTAPPEESFRSGVETTTPSQKQEPIDKELYPLTSLRSLFGNDPSSQ*,ATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAGAATTAGATCGATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAAATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTTAATCCTGGCCTGTTAGAAACATCAGAAGGCTGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAGATCATTATATAATACAGTAGCAACCCTCTATTGTGTGCATCAAAGGATAGAGATAAAAGACACCAAGGAAGCTTTAGAGAAGATAGAGGAAGAGCAAAACAAAAGTAAGAAAAAAGCACAGCAAGCAGCAGCTGACACAGGACACAGCAACCAGATCAGCCAAAATTACCCTATAGTGCAGAACATCCAGGGGCAAGTGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATCAATGAGGAAGCTGCAGAATGGGATAGAGTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGGATGGATGACAAATAATCYWYCTWTCCCAGTAGGAGAAATTTATAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGAATGTATAGCCCTACCAGCATTCTGGACATAAGACAAGGACCAAAAGAACCCTTTAGAGACTATGTAGACCGGTTCTATAAAACTCTAAGAGCCGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAACCCAGATTGTAAGACTATTTTAAAAGCATTGGGACCWGCAGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCCGGCCATAAGGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAACAAATTCAGCTACCATAATGATGCAGAGAGGCAATTTTAGGAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGAGTGTACTGAGAGACAGGCTAATTTTTTAGGGAAGATCTGGCCTTCCTACAAGGGAAGGCCAGGGAATTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTCTGGGGTAGAGACAACAACTCCCTCTCAGAAGCAGGAGCCGATAGACAAGGAACTGTATCCTTTAACTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAA -MN691959,pol,1934,4946,2084,5096,forward,0.03589232303090717,FFREDLAFLQGKAREFSSEQTRANSPTRRELQVWGRDNNSLSEAGADRQGTVSFNFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTRALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKITTESIVIWGKTPRFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKILFLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED,FFREDLAFLQGKAREFSSEQTRANSPTRRELQVWGRDNNSLSEAGADRQGTVSFNFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTRALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKITTESIVIWGKTPRFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKILFLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAGATCTGGCCTTCCTACAAGGGAAGGCCAGGGAATTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTCTGGGGTAGAGACAACAACTCCCTCTCAGAAGCAGGAGCCGATAGACAAGGAACTGTATCCTTTAACTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACTCATAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGATTGGTTGCACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAAAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCCGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATGAAGACTTCAGGAAGTATACTGCATTTACCATACCTAGTATAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGACATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAGCTGAGACAACATCTGTTGAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTGAATTGGGCAAGTCAGATTTACCCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAGAGCATTAACAGAAGTAATACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTCTAAAAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAGCAGGGGCAAGGCCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGGAAATATGCAAGAACGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGTATAGTAATATGGGGAAAGACTCCTAGATTTAAACTACCCATACAAAAGGAAACATGGGAAACATGGTGGACAGAATATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCTTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGGTATGTTACTAACAAAGGAAGACAAAAGGTTGTCCCCCTAACTAACACAACAAATCAGAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATCAAAGTGAATCAGAGTTAGTCAATCAAATAATAGAGCAGTTAATAAAAAAGGAAAAGGTCTATCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTGCTGGAATCAGGAAAATACTATTTTTAGATGGAATAGATAAGGCCCAAGATGAACATGAGAAATATCACAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGAGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAACTAGATTGTACACATTTAGAAGGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAAACAGGGCAGGAAACAGCATATTTTCTTTTAAAATTAGCAGGAAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTGCTACGGTTAAGGCCGCCTGTTGGTGGGCGGGAATCAAGCAGGAATTTGGAATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTCCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGACATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG -MN691959,vif,4890,5469,5040,5619,forward,0.0625,MENRWQVMIVWQVDRMRIRTWKSLVKHHMYVSGKARGWFYRHHYERTHPRISSEVYIPLGDARLVITTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPELADQLIHLYYFDCFSDSAIRKALLGHIVSPRCEYQAGHNKVGSLQYLALAALITPKKIKPPLPSVTKLTEDRWNKPQKTKGHRGSHTMNGH,MENRWQVMIVWQVDRMRIRTWKSLVKHHMYVSGKARGWFYRHHYERTHPRISSEVYIPLGDARLVITTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPELADQLIHLYYFDCFSDSAIRKALLGHIVSPRCEYQAGHNKVGSLQYLALAALITPKKIKPPLPSVTKLTEDRWNKPQKTKGHRGSHTMNGH*,ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAAAAGTTTAGTAAAACACCATATGTATGTTTCAGGGAAAGCTAGGGGATGGTTTTATAGACATCACTATGAAAGAACTCATCCAAGAATAAGTTCAGAAGTATACATCCCACTAGGGGATGCTAGATTGGTAATAACAACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGGAAAAGGAGATATAGCACACAAGTAGACCCTGAACTAGCAGACCAACTAATTCATCTGTATTACTTTGACTGTTTTTCAGACTCTGCTATAAGAAAGGCCTTATTAGGACATATAGTTAGCCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGATCTCTACAATACTTGGCACTAGCAGCATTAATAACACCAAAAAAGATAAAGCCACCTTTGCCTAGTGTTACAAAACTGACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCACACAATGAATGGACACTAG -MN691959,vpr,5408,5702,5558,5850,forward,0.21153846153845945,MEQAPEDQGPQREPHNEWTLELLEELKNEAVRHFPRIWLHGLGQHIYETYGDTWAGVEAIIRILQQLLFIHFRIGCRHSRIGVTQQKRARNGASRS,MEQAPEDQGPQREPHNEWTLELLEELKNEAVRHFPRIWLHGLGQHIYETYGDTWAGVEAIIRILQQLLFIHFRIGCRHSRIGVTQQKRARNGASRS*T,ATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCACACAATGAATGGACACTAGAGCTTTTAGAGGAGCTTAAGAATGAAGCTGTTAGACATTTTCCTAGGATTTGGCTCCATGGCTTAGGGCAACATATCTATGAAACTTATGGGGATACTTGGGCAGGAGTGGAAGCCATAATAAGAATTCTGCAACAACTGCTGTTTATCCATTTCAGAATTGGGTGTCGACATAGCAGAATAGGCGTTACTCAACAGAAGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACT -MN691959,tat_exon1,5679,5895,5830,6045,forward,0.29166666666666674,MEPVDPRLEPWKHPGSQPKTACTTCYCKKCCFHCQVCFMTKALGISYGRKKRRQRRRPPQDSQTHQVSLSKQ,MEPVDPRLEPWKHPGSQPKTACTTCYCKKCCFHCQVCFMTKALGISYGRKKRRQRRRPPQDSQTHQVSLSKQ,ATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCATCCAGGAAGTCAGCCTAAAACTGCTTGTACCACTTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATGACAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGACCTCCTCAAGACAGTCAGACTCATCAAGTTTCTCTATCAAAGCAG -MN691959,rev_exon1,5818,5896,5969,6045,forward,0.5769230769230769,MAGRSGDSDEDLLKTVRLIKFLYQSS,MAGRSGDSDEDLLKTVRLIKFLYQSS,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGACCTCCTCAAGACAGTCAGACTCATCAAGTTTCTCTATCAAAGCAGT -MN691959,vpu,5910,6156,6061,6310,forward,0.7060975609756097,SIVIIEYRKILRQRKIDRLIDRLIERAEDSGNESEGEVSALVEMGVEMGHHAPWDIDDL,MQPIQIAIVALVVAIIIAIVV*SIVIIEYRKILRQRKIDRLIDRLIERAEDSGNESEGEVSALVEMGVEMGHHAPWDIDDL*,ATGCAACCTATACAAATAGCAATAGTAGCATTAGTAGTAGCAATAATAATAGCAATAGTTGTGTGATCCATAGTAATCATAGAATATAGGAAAATATTAAGACAAAGGAAAATAGACAGGTTAATTGATAGACTAATAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGAGAAGTGTCAGCACTTGTGGAGATGGGGGTGGAGATGGGGCACCATGCTCCTTGGGATATTGATGATCTGTAG -MN691959,env,6070,8683,6224,8795,forward,0.0867990654205606,MRVKEKCQHLWRWGWRWGTMLLGILMICSATEKLWVTVYYGVPVWKEATTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEVVLVNVTENFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVSLKCTDLGNATNTNSSNTNSSSGEMMMEKGEIKNCSFNISTSIRNKVQKEYAFFYKLDIVPIDNDTTSYTLTSCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNNKTFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEDVVIRSANFTDNAKTIIVQLNQSVEINCTRPNNNTRKSIRIQRGPGRAFVTIGKIGNMRQAHCNISRAKWNATLKQIASKLREQFGNNKTIIFKQSSGGDPEIVTHSFNCGGEFFYCNSTQLFNSTWFNSTWSTEGSNNTEGSDTITLPCRIKQFINMWQEVGKAMYAPPISGQIRCSSNITGLLLTRDGGNNNNGSEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQREKRAVGIGALFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARILAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKSLEQIWNNMTWMEWDREINNYTSLIHSLIEESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGGLVGLRIVFAVLSIVNRVRQGYSPLSFQTHLPNPGGPDRPEGIEEEGGERDRDRSIRLVNGSLALIWDDLRSLCLFSYHRLRDLLLIVTRIVELLGRRGWEALKYWWNLLQYWSQELKNSAVSLLNATAIAVAEGTDRVIEVVQGAYRAIRHIPRRIRQGLERILL,MRVKEKCQHLWRWGWRWGTMLLGILMICSATEKLWVTVYYGVPVWKEATTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEVVLVNVTENFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVSLKCTDLGNATNTNSSNTNSSSGEMMMEKGEIKNCSFNISTSIRNKVQKEYAFFYKLDIVPIDNDTTSYTLTSCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNNKTFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEDVVIRSANFTDNAKTIIVQLNQSVEINCTRPNNNTRKSIRIQRGPGRAFVTIGKIGNMRQAHCNISRAKWNATLKQIASKLREQFGNNKTIIFKQSSGGDPEIVTHSFNCGGEFFYCNSTQLFNSTWFNSTWSTEGSNNTEGSDTITLPCRIKQFINMWQEVGKAMYAPPISGQIRCSSNITGLLLTRDGGNNNNGSEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQREKRAVGIGALFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARILAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKSLEQIWNNMTWMEWDREINNYTSLIHSLIEESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGGLVGLRIVFAVLSIVNRVRQGYSPLSFQTHLPNPGGPDRPEGIEEEGGERDRDRSIRLVNGSLALIWDDLRSLCLFSYHRLRDLLLIVTRIVELLGRRGWEALKYWWNLLQYWSQELKNSAVSLLNATAIAVAEGTDRVIEVVQGAYRAIRHIPRRIRQGLERILL*DGWQVVKK*,ATGAGAGTGAAGGAGAAGTGTCAGCACTTGTGGAGATGGGGGTGGAGATGGGGCACCATGCTCCTTGGGATATTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAAGGAAGCAACCACCACTCTATTTTGTGCATCAGATGCTAAAGCATATGATGCAGAGGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGTATTGGTAAATGTGACAGAAAATTTTAACATGTGGAAAAATGACATGGTAGAACAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTAGTTTAAAGTGCACTGATTTGGGGAATGCTACTAATACCAATAGTAGTAATACCAATAGTAGTAGCGGGGAAATGATGATGGAGAAAGGAGAGATAAAAAACTGCTCTTTCAATATCAGCACAAGCATAAGAAATAAGGTGCAGAAAGAATATGCATTCTTTTATAAACTTGATATAGTACCAATAGATAATGATACTACCAGCTATACGTTGACAAGTTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAATGTAATAATAAGACGTTCAATGGAACAGGACCATGTACAAATGTCAGCACAGTACAATGTACACATGGAATTAGGCCAGTAGTATCAACTCAACTGCTGTTAAATGGCAGTCTAGCAGAAGAAGATGTAGTAATTAGATCTGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTGAACCAATCTGTAGAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATCCGTATCCAGAGAGGACCAGGGAGAGCATTTGTTACAATAGGAAAAATAGGAAATATGAGACAAGCACATTGTAACATTAGTAGAGCAAAATGGAATGCCACTTTAAAACAGATAGCTAGCAAATTAAGAGAACAATTTGGAAATAATAAAACAATAATCTTTAAGCAATCCTCAGGAGGGGACCCAGAAATTGTAACGCACAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAATTCAACACAACTGTTTAATAGTACTTGGTTTAATAGTACTTGGAGTACTGAAGGGTCAAATAACACTGAAGGAAGTGACACAATCACACTCCCATGCAGAATAAAACAATTTATAAACATGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCATCAGCGGACAAATTAGATGTTCATCAAATATTACAGGGCTGCTATTAACAAGAGATGGTGGTAATAACAACAATGGGTCCGAGATCTTCAGACCTGGAGGAGGAGATATGAGGGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAAAATTGAACCATTAGGAGTAGCACCCACCAAGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTTTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAATGACGCTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAGCAGCAGAACAATTTGCTGAGGGCTATTGAGGCGCAACAGCATCTGTTGCAACTCACAGTCTGGGGCATCAAACAGCTCCAGGCAAGAATCCTGGCTGTGGAAAGATACCTAAAGGATCAACAGCTCCTGGGGATTTGGGGCTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCTTGGAATGCTAGTTGGAGTAATAAATCTCTGGAACAGATTTGGAATAACATGACCTGGATGGAGTGGGACAGAGAAATTAACAATTACACAAGCTTAATACACTCCTTAATTGAAGAATCGCAAAACCAGCAAGAAAAGAATGAACAAGAATTATTGGAATTAGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAATTGGCTGTGGTATATAAAATTATTCATAATGATAGTAGGAGGCTTGGTAGGTTTAAGAATAGTTTTTGCTGTACTTTCTATAGTGAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAAACCCGGGGGGACCCGACAGGCCCGAAGGAATAGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCATTCGATTAGTGAACGGATCCTTAGCACTTATCTGGGACGATCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAATATTGGTGGAATCTCCTACAATATTGGAGTCAGGAGCTAAAGAATAGTGCTGTTAGCTTGCTCAATGCCACAGCTATAGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAGGAGCTTATAGAGCTATTCGCCACATACCTAGAAGAATAAGACAGGGCTTGGAAAGGATTTTGCTATAAGATGGGTGGCAAGTGGTCAAAAAGTAG -MN691959,tat_exon2,8237,8333,8376,8469,forward,0.19999999999999996,RPTSQTRGDPTGPKE,RPTSQTRGDPTGPKE*KKKVERETETDPFD**,AGACCCACCTCCCAAACCCGGGGGGACCCGACAGGCCCGAAGGAATAGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCATTCGATTAGTGA -MN691959,rev_exon2,8238,8514,8377,8653,forward,0.16483516483516492,DPPPKPGGTRQARRNRRRRWRERQRQIHSISERILSTYLGRSAEPVPLQLPPLERLTLDCNEDCGTSGTQGVGSPQILVESPTILESGAKE,DPPPKPGGTRQARRNRRRRWRERQRQIHSISERILSTYLGRSAEPVPLQLPPLERLTLDCNEDCGTSGTQGVGSPQILVESPTILESGAKE*,GACCCACCTCCCAAACCCGGGGGGACCCGACAGGCCCGAAGGAATAGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCATTCGATTAGTGAACGGATCCTTAGCACTTATCTGGGACGATCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAATATTGGTGGAATCTCCTACAATATTGGAGTCAGGAGCTAAAGAATAG -MN691959,nef,8657,9278,8796,9417,forward,0.16991869918698432,MGGKWSKSSVIGWPTVRERMRRAEPAADGVGAASRDLEKHGAITSSNTAATNAACAWLEAQEEEEVGFPVTPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIHSQRRQDILDLWIYHTQGYFPDWQNYTPGPGIRYPLTFGWCYKLVPVEPDKVEEANKGENTSLLHPVSLHGMDDPEREVLEWRFDSRLAFHHVARELHPEYFKNC,MGGKWSKSSVIGWPTVRERMRRAEPAADGVGAASRDLEKHGAITSSNTAATNAACAWLEAQEEEEVGFPVTPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIHSQRRQDILDLWIYHTQGYFPDWQNYTPGPGIRYPLTFGWCYKLVPVEPDKVEEANKGENTSLLHPVSLHGMDDPEREVLEWRFDSRLAFHHVARELHPEYFKNC*,ATGGGTGGCAAGTGGTCAAAAAGTAGTGTGATTGGATGGCCTACTGTAAGGGAAAGAATGAGACGAGCTGAGCCAGCAGCAGATGGGGTGGGAGCAGCATCTCGAGACCTGGAAAAACATGGAGCAATCACAAGTAGCAATACAGCAGCTACCAATGCTGCTTGTGCCTGGCTAGAAGCACAAGAGGAGGAGGAGGTGGGTTTTCCAGTCACACCTCAGGTACCTTTAAGACCAATGACTTACAAGGCAGCTGTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCACTCCCAAAGAAGACAAGATATCCTTGATCTGTGGATCTACCACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGATCAGATATCCATTGACCTTTGGATGGTGCTACAAGCTAGTACCAGTTGAGCCAGATAAGGTAGAAGAGGCCAATAAAGGAGAGAACACCAGCTTGTTACACCCTGTGAGCCTGCATGGAATGGATGACCCTGAGAGAGAAGTGTTAGAGTGGAGGTTTGACAGCCGCCTAGCATTTCATCACGTGGCCCGAGAGCTGCATCCGGAGTACTTCAAGAACTGCTGA -MN692074,env,2,4115,6224,8795,forward,1.9582943925233647,MNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLRKKKSVTVLDVGDAYFSVPLDKEFRKYTAFTIPSRNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPEIVIYQYMDDLYVGSDLEIGQHRIKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEIVPLTKEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYAKMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDTQWRALRCCI,EGLIWSQKRQDILDLWIYHTQGYFPDWQNYTPGPGTRFPLTFGWCFKLVPVDPEKVEEANAGENNSLLHPISLHGMEDPEKEVLMWKFDSRLAFHHMARELHPEYYKNC*LRAIYKGLSAGDFPGRRGLGGTGEWRALRCCI*AAAFCLYWVSLVRPDLSLGALWLAREPTA*ASIKLALSALSSVCPSVV*LW*LEIPQTLLVSVENL*QWRPNRDLKAKEKPEELSRRRTRLAEARTARGEGRRLVSTPKILTSGG*KERDGCESVSIKCGRIRQMGKNSVKARGKEKI*IKTYSMGKQGARTIRS*SWPVRNIRRL*TNTGTATTIPSDRIRRT*III*YNSNPLLCASKDRGKRHQGSFREGRGRAKQK*EKGTASSS*HRKQQPGQPKLPYSAEHPGANGTSGHIT*NFKCMGKSSRREGFQPRSNTHVFSIIRRSHPTRFKHHAKHSGGTSSSHANVKRDHQ*GSCRMG*IAPSACRAYCTRPDERAKGK*HSRNY*YPSGTNRMDDK*STYPSRRNL*KMDNHGIK*NSKDV*SYQHSGHKTRTKGTL*RLCRSVL*NSKSRASFTGGKKLDDRNLVGPKCEPRL*DYFESIGTSRYIRRNDDSMSGSGRTRP*SKSFGGSNEPSNKFSYHNDAERQF*EPKKEC*VFQLWQRRAHSQKLQGP*EKGLLEMWKGRTPNERLY*ETG*FFREDLAFPQGKAREFPSEQTRANSPTRRELQVWGRDNNSRSEAGADRQGTVSFSFPQITLWQRPLVTIRIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLRKKKSVTVLDVGDAYFSVPLDKEFRKYTAFTIPSRNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPEIVIYQYMDDLYVGSDLEIGQHRIKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEIVPLTKEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYAKMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDTQWRALRCCI*,GAAGGGCTAATTTGGTCCCAGAAAAGACAAGATATCCTTGATCTGTGGATCTACCACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCGGGGACCAGATTTCCACTGACCTTTGGATGGTGCTTCAAGCTAGTACCAGTTGATCCAGAGAAGGTAGAAGAGGCCAATGCAGGAGAGAACAACAGCTTGTTACACCCTATAAGCCTGCATGGGATGGAGGACCCGGAGAAAGAAGTGTTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCACATGGCCCGAGAGCTGCATCCGGAGTACTACAAGAATTGCTGACTTCGAGCTATCTACAAGGGACTTTCCGCTGGGGACTTTCCAGGGAGGCGTGGCCTGGGCGGGACTGGGGAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTTTGCCTGTACTGGGTCTCTCTGGTTAGACCAGATCTGAGCCTGGGAGCTCTCTGGCTAGCTAGGGAACCCACTGCTTAAGCCTCAATAAAGCTTGCCTTGAGTGCTTTAAGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGGTAACTAGAGATCCCTCAGACCCTTTTAGTCAGTGTGGAAAATCTCTAGCAGTGGCGCCCGAACAGGGACTTGAAAGCGAAAGAGAAACCAGAGGAGCTCTCTCGACGCAGGACTCGGCTTGCTGAAGCGCGCACGGCAAGAGGCGAGGGGCGGCGACTGGTGAGTACGCCAAAAATTTTGACTAGCGGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCGTCAGTATTAAGTGCGGGAGAATTAGACAAATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTTAATCCTGGCCTGTTAGAAACATCAGAAGGCTGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAGATCATTATATAATACAATAGCAACCCTCTATTGTGTGCATCAAAAGATAGAGGTAAAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGCAGCAGCTGACACAGGAAACAACAGCCAGGTCAGCCAAAATTACCCTATAGTGCAGAACATCCAGGGGCAAATGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCACCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAGCCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGGATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCATGGGATTAAATAAAATAGTAAGGATGTATAGTCCTACCAGCATTCTGGACATAAGACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGATCGGTTCTATAAAACTCTAAGAGCCGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAACCCAGATTGTAAGACTATTTTGAAAGCATTGGGACCAGCCGCTACATTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCCGGCCATAAAGCAAGAGTTTTGGCGGAAGCAATGAGCCAAGTAACAAATTCAGCTACCATAATGATGCAGAAAGGCAATTTTAGGAACCAAAAAAGGAATGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGGAAAAGGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGATTGTACTGAGAGACAGGCTAATTTTTTAGGGAAGATCTGGCCTTCCCACAAGGGAAGGCCAGGGAATTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAACAACTCCCGCTCAGAAGCAGGAGCCGATAGACAAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAAGGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAATTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACTCATAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGATTGGTTGCACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCCGCAGGGTTAAGAAAGAAAAAATCAGTAACAGTACTGGATGTGGGGGATGCATATTTTTCAGTTCCCTTAGATAAAGAATTTAGGAAATATACTGCATTTACCATACCCAGTAGAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATTTTAGAGCCTTTTAGAAAACAAAATCCAGAAATAGTTATCTATCAATACATGGATGATTTATATGTAGGATCTGATTTAGAAATAGGGCAGCATAGAATAAAAATAGAGGAACTGAGACAACATCTGTTGAGATGGGGATTTACCACACCAGACAAAAAACATCAGAAAGAACCCCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTGAATTGGGCAAGTCAGATTTACCCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAAATAGTACCACTAACAAAAGAAGCAGAGCTGGAACTGGCAGAAAACAGGGAAATTCTAAAAGAACCAGTACATGGAGTATATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAGCAGGGGCAAGGTCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAAAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTACCCATACAAAAAGAAACATGGGAAGCATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAACAGAGGAAGACAAAAAGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAATTACAAGCAATTCATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATACCCAGTGGCGAGCCCTCAGATGCTGCATATAA -MN692074,gag,789,2292,789,2292,forward,0.13880000000000003,MGARASVLSAGELDKWEKIRLRPGGKKKYRLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTIATLYCVHQKIEVKDTKEALEKVEEEQNKSKKKAQQAAADTGNNSQVSQNYPIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIIMGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSATIMMQKGNFRNQKRNVKCFNCGKEGHIARNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETTTPAQKQEPIDKELYPLASLRSLFGNDPSSQ,MGARASVLSAGELDKWEKIRLRPGGKKKYRLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTIATLYCVHQKIEVKDTKEALEKVEEEQNKSKKKAQQAAADTGNNSQVSQNYPIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIIMGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSATIMMQKGNFRNQKRNVKCFNCGKEGHIARNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETTTPAQKQEPIDKELYPLASLRSLFGNDPSSQ*,ATGGGTGCGAGAGCGTCAGTATTAAGTGCGGGAGAATTAGACAAATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTTAATCCTGGCCTGTTAGAAACATCAGAAGGCTGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAGATCATTATATAATACAATAGCAACCCTCTATTGTGTGCATCAAAAGATAGAGGTAAAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGCAGCAGCTGACACAGGAAACAACAGCCAGGTCAGCCAAAATTACCCTATAGTGCAGAACATCCAGGGGCAAATGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCACCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAGCCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGGATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCATGGGATTAAATAAAATAGTAAGGATGTATAGTCCTACCAGCATTCTGGACATAAGACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGATCGGTTCTATAAAACTCTAAGAGCCGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAACCCAGATTGTAAGACTATTTTGAAAGCATTGGGACCAGCCGCTACATTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCCGGCCATAAAGCAAGAGTTTTGGCGGAAGCAATGAGCCAAGTAACAAATTCAGCTACCATAATGATGCAGAAAGGCAATTTTAGGAACCAAAAAAGGAATGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGGAAAAGGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGATTGTACTGAGAGACAGGCTAATTTTTTAGGGAAGATCTGGCCTTCCCACAAGGGAAGGCCAGGGAATTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAACAACTCCCGCTCAGAAGCAGGAGCCGATAGACAAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAA -MN692074,pol,2084,4115,2084,5096,forward,0.7912263210369039,FFREDLAFPQGKAREFPSEQTRANSPTRRELQVWGRDNNSRSEAGADRQGTVSFSFPQITLWQRPLVTIRIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLRKKKSVTVLDVGDAYFSVPLDKEFRKYTAFTIPSRNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPEIVIYQYMDDLYVGSDLEIGQHRIKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEIVPLTKEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYAKMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDTQWRALRCCI,FFREDLAFPQGKAREFPSEQTRANSPTRRELQVWGRDNNSRSEAGADRQGTVSFSFPQITLWQRPLVTIRIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLRKKKSVTVLDVGDAYFSVPLDKEFRKYTAFTIPSRNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPEIVIYQYMDDLYVGSDLEIGQHRIKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEIVPLTKEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYAKMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDTQWRALRCCI*,TTTTTTAGGGAAGATCTGGCCTTCCCACAAGGGAAGGCCAGGGAATTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAACAACTCCCGCTCAGAAGCAGGAGCCGATAGACAAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAAGGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAATTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACTCATAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGATTGGTTGCACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCCGCAGGGTTAAGAAAGAAAAAATCAGTAACAGTACTGGATGTGGGGGATGCATATTTTTCAGTTCCCTTAGATAAAGAATTTAGGAAATATACTGCATTTACCATACCCAGTAGAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATTTTAGAGCCTTTTAGAAAACAAAATCCAGAAATAGTTATCTATCAATACATGGATGATTTATATGTAGGATCTGATTTAGAAATAGGGCAGCATAGAATAAAAATAGAGGAACTGAGACAACATCTGTTGAGATGGGGATTTACCACACCAGACAAAAAACATCAGAAAGAACCCCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTGAATTGGGCAAGTCAGATTTACCCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAAATAGTACCACTAACAAAAGAAGCAGAGCTGGAACTGGCAGAAAACAGGGAAATTCTAAAAGAACCAGTACATGGAGTATATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAGCAGGGGCAAGGTCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAAAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTACCCATACAAAAAGAAACATGGGAAGCATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAACAGAGGAAGACAAAAAGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAATTACAAGCAATTCATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATACCCAGTGGCGAGCCCTCAGATGCTGCATATAA -MN692074,vif,3617,4115,5040,5619,forward,1.9968750000000002,MRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDTQWRALRCCI,MRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDTQWRALRCCI*,ATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTACCCATACAAAAAGAAACATGGGAAGCATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAACAGAGGAAGACAAAAAGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAATTACAAGCAATTCATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATACCCAGTGGCGAGCCCTCAGATGCTGCATATAA -MN692074,vpr,3617,4085,5558,5850,forward,1.9602564102564104,MRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDT,MRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDT,ATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTACCCATACAAAAAGAAACATGGGAAGCATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAACAGAGGAAGACAAAAAGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAATTACAAGCAATTCATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATACC -MN692074,nef,3617,4115,8796,9417,forward,1.965040650406504,MRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDTQWRALRCCI,MRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDTQWRALRCCI*,ATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTACCCATACAAAAAGAAACATGGGAAGCATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAACAGAGGAAGACAAAAAGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAATTACAAGCAATTCATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATACCCAGTGGCGAGCCCTCAGATGCTGCATATAA -MN692074,tat_exon1,3823,4084,5830,6045,forward,2.0305555555555554,MVPVRERTHSRSRNLLCRWGS,MVPVRERTHSRSRNLLCRWGS*QGD*IRKSRICY*QRKTKSCLPN*HNKSED*ITSNSSSFAGFGIRSKHSNRLTICIRNHSSTTRY,ATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAACAGAGGAAGACAAAAAGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAATTACAAGCAATTCATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATAC -MN692074,rev_exon1,3823,4084,5969,6045,forward,2.0153846153846153,MVPVRERTHSRSRNLLCRWGS,MVPVRERTHSRSRNLLCRWGS*QGD*IRKSRICY*QRKTKSCLPN*HNKSED*ITSNSSSFAGFGIRSKHSNRLTICIRNHSSTTRY,ATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAACAGAGGAAGACAAAAAGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAATTACAAGCAATTCATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATAC -MN692074,vpu,4080,4164,6061,6310,forward,2.09390243902439,IPSGEPSDAAYKQLLFACTGSLWLDQI,IPSGEPSDAAYKQLLFACTGSLWLDQI*,ATACCCAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTTTGCCTGTACTGGGTCTCTCTGGTTAGACCAGATCTGA -MN692074,tat_exon2,4080,4164,8376,8469,forward,2.1133333333333333,IPSGEPSDAAYKQLLFACTGSLWLDQI,IPSGEPSDAAYKQLLFACTGSLWLDQI*,ATACCCAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTTTGCCTGTACTGGGTCTCTCTGGTTAGACCAGATCTGA -MN692074,rev_exon2,4080,4164,8377,8653,forward,2.065934065934066,IPSGEPSDAAYKQLLFACTGSLWLDQI,IPSGEPSDAAYKQLLFACTGSLWLDQI*,ATACCCAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTTTGCCTGTACTGGGTCTCTCTGGTTAGACCAGATCTGA -MN692145,gag,775,2287,789,2292,forward,0.15900000000000003,MGARASVLSGGKLDQWEKIRLRPGGKKKYQLKHIVWASKELERFAVNPGLLETTEGCRQILGQLQPSLQTGSEELKSLYNTVATLYCVHQRIDVKDTKEALDKIEEEQNKSKEKAKQAAADTGNSNQVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKESFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPGATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRSQRKIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETTTPSQKQESTGKELYPPLASLRSLFGNDPSSQ,MGARASVLSGGKLDQWEKIRLRPGGKKKYQLKHIVWASKELERFAVNPGLLETTEGCRQILGQLQPSLQTGSEELKSLYNTVATLYCVHQRIDVKDTKEALDKIEEEQNKSKEKAKQAAADTGNSNQVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKESFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPGATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRSQRKIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETTTPSQKQESTGKELYPPLASLRSLFGNDPSSQ*R*,ATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAAAATTAGATCAATGGGAGAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATCAATTAAAACATATAGTATGGGCAAGCAAGGAACTAGAACGATTTGCAGTTAATCCTGGCCTGTTAGAAACAACAGAAGGATGTAGACAAATACTGGGACAGCTACAACCATCTCTTCAGACAGGATCAGAAGAACTTAAATCATTATATAATACAGTAGCAACCCTCTATTGTGTGCATCAAAGGATAGATGTAAAAGACACCAAGGAAGCATTAGATAAGATAGAGGAAGAGCAAAACAAGAGTAAGGAAAAAGCAAAACAAGCAGCAGCTGACACAGGAAACAGCAACCAGGTCAGCCAAAATTACCCTATAGTGCAGAACCTTCAGGGCCAAATGGTACACCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAATAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAATACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGAGTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACCACTAGTACCCTTCAGGAACAAATAGGATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGGATGTATAGTCCTACCAGCATTCTGGATATAAGACAAGGACCAAAAGAATCCTTTAGAGATTATGTAGACCGGTTCTACAAAACTCTAAGAGCTGAGCAAGCCTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATTCAAACCCAGATTGTAAGACTATCTTAAAAGCATTGGGACCAGGAGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCCGGCCATAAAGCAAGAGTCTTGGCTGAAGCAATGAGCCAAGTAACAAATTCAGCTACCATAATGATGCAGAGAGGCAATTTTAGGAGCCAAAGGAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAGGGGCATATAGCCAGAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGATTGTACTGAAAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGGAGGCCAGGAAATTTCCTTCAGAGCAGGCCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAACAACTCCCTCTCAGAAGCAGGAGTCGACAGGCAAGGAACTGTATCCTCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAG -MN692145,pol,2070,5085,2084,5096,forward,0.10618145563310066,FFRENLAFPQGEARKFPSEQARANSPTRRELQVWGRDNNSLSEAGVDRQGTVSSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQISIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKESWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARVRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGASNRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLINKEKVYLAWVPAHKGIGGNEQVDKLVSTGIRKVLFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAREIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKVKIIRDYGKQMAGDDCVASRQDED,FFRENLAFPQGEARKFPSEQARANSPTRRELQVWGRDNNSLSEAGVDRQGTVSSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQISIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKESWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARVRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGASNRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLINKEKVYLAWVPAHKGIGGNEQVDKLVSTGIRKVLFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAREIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKVKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGGAGGCCAGGAAATTTCCTTCAGAGCAGGCCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAACAACTCCCTCTCAGAAGCAGGAGTCGACAGGCAAGGAACTGTATCCTCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTACCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATTAAAGTAAGACAGTATGATCAGATATCCATAGAAATCTGTGGACATAAAGCTATAGGGACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAAATTGGTTGTACTTTAAATTTCCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAACAGAAATTTGTACAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGACAGCACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAAAGAACTCAAGATTTCTGGGAAGTTCAATTAGGGATACCACATCCAGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATGAGGATTTCAGGAAGTATACTGCATTTACCATACCTAGTATAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAATGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGACATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAATTGAGACAACATCTGTTGAGGTGGGGATTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAGAAAAAGAAAGCTGGACTGTCAATGACATACAAAAGTTAGTGGGTAAATTGAATTGGGCAAGTCAGATTTATGCAGGGATCAAAGTAAAACAATTATGTAAACTTCTTAGGGGAGCCAAAGCACTAACAGAAGTAATACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAGATTTTAAAAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAGCAGGGGCAAGGCCAATGGACATATCAGATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAGTGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAGCCACTGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAGGTTACCCATACAAAAAGAAACATGGGAAACATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCATCTAATAGAGAGACTAAATTAGGAAAAGCAGGATATGTTACTGACAGAGGAAGACAGAAAGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAGTTACAAGCAATTCATCTAGCTTTGCAGGATTCAGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATAAAAGTGAATCAGAGTTAGTCAATCAAATAATAGAACAGTTAATAAACAAGGAAAAGGTCTACTTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTTAGTACTGGAATTAGAAAAGTACTATTTTTAGATGGAATAGATAAGGCCCAAGAAGAACATGAGAAATACCACAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTGGTAGCAAGAGAAATAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGAGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAGCTAGATTGTACACATTTAGAAGGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAAACAGGACAGGAAACAGCATACTTTCTCTTAAAATTAGCAGGAAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGTAATTTCACTAGTACTACAGTTAAGGCCGCCTGTTGGTGGGCGGGGATCAAGCAGGAGTTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGACCAGGCTGAACATCTTAAAACAGCAGTACAAATGGCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTGATACAAGACAATAGTGACATAAAAGTAGTGCCAAGAAGAAAAGTAAAAATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG -MN692145,vif,5029,5608,5040,5619,forward,0.21875,MENRWQVMIVWQVDRMRIRTWKSLVKHHMYVSGKAKGWFYRHHYESHHPRISSEVHVPLGDARLVITTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPNLADQLIHLYYFDCFSESAIRSAILGHIVSPSCEYQAGHNKVGSLQYLALAALITPKRRKPPLPSVAKLTEDRWNKPQKTKGHRGSHIRNGH,MENRWQVMIVWQVDRMRIRTWKSLVKHHMYVSGKAKGWFYRHHYESHHPRISSEVHVPLGDARLVITTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPNLADQLIHLYYFDCFSESAIRSAILGHIVSPSCEYQAGHNKVGSLQYLALAALITPKRRKPPLPSVAKLTEDRWNKPQKTKGHRGSHIRNGH*,ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAAAAGTTTAGTAAAACACCATATGTATGTTTCAGGGAAAGCTAAGGGATGGTTTTATAGACATCACTATGAAAGCCATCATCCAAGAATAAGTTCAGAAGTACATGTCCCACTAGGGGATGCTAGATTGGTAATAACAACATATTGGGGTCTGCATACAGGAGAAAGAGATTGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGGAAAAGGAGATATAGCACACAAGTAGACCCCAACCTAGCAGACCAACTGATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAGTGCCATATTAGGACATATAGTTAGTCCTAGTTGTGAATATCAAGCAGGACATAACAAGGTAGGATCTCTACAGTACTTGGCATTAGCAGCATTAATAACACCAAAAAGGAGAAAGCCCCCTTTGCCTAGTGTTGCAAAGCTGACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCACCGAGGGAGCCATATCAGGAATGGACACTAG -MN692145,vpr,5547,5841,5558,5850,forward,0.44358974358974423,MEQAPEDQGPPREPYQEWTLELLEELKNEAVRHFPRMWLHGLGQHIYDTYGDTWTGVEAIIRILQQLLFIHFRIGCQHSRIGIIRQRRTRNGANRS,MEQAPEDQGPPREPYQEWTLELLEELKNEAVRHFPRMWLHGLGQHIYDTYGDTWTGVEAIIRILQQLLFIHFRIGCQHSRIGIIRQRRTRNGANRS*T,ATGGAACAAGCCCCAGAAGACCAAGGGCCACCGAGGGAGCCATATCAGGAATGGACACTAGAGCTTTTAGAGGAGCTTAAGAATGAAGCTGTTAGACATTTTCCTAGGATGTGGCTCCATGGCTTAGGGCAACATATCTATGACACTTATGGGGATACTTGGACAGGAGTGGAAGCCATAATAAGAATTCTGCAACAACTGCTGTTCATTCATTTCAGGATTGGGTGTCAACATAGCAGAATAGGCATTATTCGCCAGAGGAGAACAAGAAATGGAGCCAATAGATCCTAGACT -MN692145,tat_exon1,5818,6037,5830,6045,forward,0.29166666666666674,MEPIDPRLEPWKHPGSQPKTACTSCYCKKCCFHCQVCFMTKALGISYGRKKRRQRRRASQDSQTHQVSLSKQ,MEPIDPRLEPWKHPGSQPKTACTSCYCKKCCFHCQVCFMTKALGISYGRKKRRQRRRASQDSQTHQVSLSKQ*,ATGGAGCCAATAGATCCTAGACTAGAGCCCTGGAAGCATCCAGGAAGCCAGCCTAAGACTGCTTGTACCTCTTGCTATTGTAAAAAGTGTTGCTTTCATTGTCAAGTCTGTTTCATGACAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTTCTCAAGACAGTCAGACTCATCAAGTTTCTCTATCAAAGCAGTAA -MN692145,rev_exon1,5957,6038,5969,6045,forward,0.5192307692307692,MAGRSGDSDEELLKTVRLIKFLYQSSK,MAGRSGDSDEELLKTVRLIKFLYQSSK,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTTCTCAAGACAGTCAGACTCATCAAGTTTCTCTATCAAAGCAGTAAG -MN692145,vpu,6049,6298,6061,6310,forward,0.5804878048780489,MNSLQISAIVAIVVAIILAIVVWSIVFIEYRKILRQRKIDRLIDRIRERAEDSGNESEGDQEELSTALMEMGHHAPWDVDDL,MNSLQISAIVAIVVAIILAIVVWSIVFIEYRKILRQRKIDRLIDRIRERAEDSGNESEGDQEELSTALMEMGHHAPWDVDDL*,ATGAACTCTTTACAAATATCAGCAATAGTAGCAATAGTAGTAGCAATAATACTAGCAATAGTTGTGTGGTCTATAGTATTCATAGAATATAGGAAAATATTAAGACAAAGAAAAATAGATAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGGGATCAGGAAGAACTATCAACAGCACTTATGGAGATGGGGCACCATGCTCCTTGGGATGTTGATGATCTGTAG -MN692145,env,6212,8783,6224,8795,forward,0.4975467289719626,MRVKGIRKNYQQHLWRWGTMLLGMLMICSAAGNLWVTVYYGVPVWKEATTTLFCASDAKAYGTEVHNVWATHACVPTDPNPQEVRLENVTENFNMWRNPMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDLGQESTNNNITGSIEKGEMKNCSFNISSSKGSKGHKEYASFYKLDVVPIGNNKTNGNYSSYRLISCNTSVITQACPKVSFEPIPIHFCAPAGYAILKCNDKQFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSANFTDNAKTIIVQLNQSVEITCTRPGNNTIRGVHMGPGKAFYAGAITGDIRKAHCIINKAKWNSTLRLVVAKLSEQFRNKTINFTQPSGGDPEIVTHSFNCGGEFFYCNTTKLFNSTWNATHMINGTWNDTEGNITLPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGGKTNESNTTEIFRPGGGDMRDNWRSELYKYKVVRIEPLGVAPTKAKRRVVQREKRAVGIGALFLGFLGAAGSTMGATSMALTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGVKQLQARVLALERYLKDQQLLGFWGCSGKLICTTDVPWNASWSNKSLGQIWENMTWMEWEREIDNYTSLIYTLITESQIQQEQNEKELLELDKWANLWNWFGITNWLWYIKIFIMIVGGLVGLRIVFAVLSIVNRVRQGYSPLSFQTRFPAPRGPDRPEGIEEEGGERDRDRSAPLVKGFLALIWVDLRSLCLFSYHRLRDLLLIITRIVELLGRRGWEVLKYLWSLLQYWTQELKNSAVSLLNATAIAVAEGTDRIIEVLQRVFRAILHIPTRIRQGFERALL,MRVKGIRKNYQQHLWRWGTMLLGMLMICSAAGNLWVTVYYGVPVWKEATTTLFCASDAKAYGTEVHNVWATHACVPTDPNPQEVRLENVTENFNMWRNPMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDLGQESTNNNITGSIEKGEMKNCSFNISSSKGSKGHKEYASFYKLDVVPIGNNKTNGNYSSYRLISCNTSVITQACPKVSFEPIPIHFCAPAGYAILKCNDKQFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSANFTDNAKTIIVQLNQSVEITCTRPGNNTIRGVHMGPGKAFYAGAITGDIRKAHCIINKAKWNSTLRLVVAKLSEQFRNKTINFTQPSGGDPEIVTHSFNCGGEFFYCNTTKLFNSTWNATHMINGTWNDTEGNITLPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGGKTNESNTTEIFRPGGGDMRDNWRSELYKYKVVRIEPLGVAPTKAKRRVVQREKRAVGIGALFLGFLGAAGSTMGATSMALTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGVKQLQARVLALERYLKDQQLLGFWGCSGKLICTTDVPWNASWSNKSLGQIWENMTWMEWEREIDNYTSLIYTLITESQIQQEQNEKELLELDKWANLWNWFGITNWLWYIKIFIMIVGGLVGLRIVFAVLSIVNRVRQGYSPLSFQTRFPAPRGPDRPEGIEEEGGERDRDRSAPLVKGFLALIWVDLRSLCLFSYHRLRDLLLIITRIVELLGRRGWEVLKYLWSLLQYWTQELKNSAVSLLNATAIAVAEGTDRIIEVLQRVFRAILHIPTRIRQGFERALL*,ATGAGAGTGAAGGGGATCAGGAAGAACTATCAACAGCACTTATGGAGATGGGGCACCATGCTCCTTGGGATGTTGATGATCTGTAGTGCTGCAGGCAATTTGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAAAGAAGCAACCACCACTCTATTTTGTGCATCAGATGCTAAAGCATATGGTACAGAGGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTGAGATTGGAAAATGTGACAGAAAATTTTAATATGTGGAGAAATCCAATGGTAGAACAGATGCATGAGGATATAATTAGTTTATGGGATCAAAGCCTAAAGCCATGTGTAAAGTTGACCCCACTCTGTGTCACTTTAAATTGCACTGATTTGGGACAGGAGAGTACCAATAATAATATCACAGGAAGTATAGAGAAAGGAGAAATGAAAAACTGCTCTTTCAATATCTCCTCAAGCAAAGGAAGTAAGGGGCATAAAGAATATGCATCTTTTTATAAACTTGATGTAGTACCAATAGGTAATAATAAGACTAATGGTAATTATTCTAGCTATAGGTTGATAAGTTGTAATACCTCAGTCATTACACAGGCCTGTCCAAAAGTATCATTTGAGCCAATTCCCATACATTTTTGTGCCCCGGCTGGGTATGCGATTCTAAAGTGTAATGATAAACAATTCAATGGAACAGGACCATGTACAAATGTCAGCACAGTACAGTGTACACATGGAATTAGGCCAGTAGTATCAACTCAACTGCTGTTAAATGGTAGTCTAGCAGAAGAAGAGGTAGTAATTAGATCTGCCAATTTCACGGACAATGCTAAAACCATAATAGTACAGCTGAACCAATCTGTAGAAATTACTTGTACAAGACCCGGTAACAATACAATAAGAGGGGTTCACATGGGACCAGGGAAGGCATTTTATGCAGGAGCAATAACAGGAGATATAAGAAAAGCACATTGTATCATTAATAAAGCAAAATGGAACAGTACTTTAAGACTGGTAGTTGCAAAATTAAGTGAGCAATTTAGGAATAAAACAATAAACTTTACTCAACCCTCAGGAGGGGACCCAGAAATTGTAACACACAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAATACAACAAAACTGTTTAATAGTACTTGGAATGCAACACACATGATTAATGGTACTTGGAATGATACTGAGGGAAATATCACCCTCCCATGCAGAATAAAACAAATTATAAACATGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCATCAGAGGACAAATTAGATGTTCATCCAATATTACAGGGTTGCTATTAACAAGAGATGGTGGTAAGACTAACGAGAGCAACACCACCGAGATCTTTAGACCTGGAGGAGGAGATATGAGAGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAGAATTGAACCATTAGGGGTAGCACCCACCAAGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTCTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAACGTCGATGGCGTTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAACAGCAGAACAATTTGCTGAGAGCTATTGAGGCGCAACAACATTTGTTGCAACTCACAGTCTGGGGCGTCAAGCAGCTCCAGGCAAGAGTCCTGGCTCTGGAAAGATACCTAAAGGATCAACAGCTCCTGGGGTTTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGATGTGCCTTGGAATGCTAGTTGGAGTAATAAATCTCTGGGACAAATTTGGGAGAACATGACCTGGATGGAGTGGGAAAGAGAAATTGATAATTACACAAGCTTAATATACACTTTAATTACAGAATCGCAGATCCAACAAGAACAGAATGAAAAAGAATTGTTGGAATTGGATAAATGGGCAAATTTGTGGAATTGGTTTGGCATAACAAACTGGCTGTGGTACATAAAAATATTTATAATGATAGTAGGAGGCTTAGTAGGTTTAAGAATAGTTTTTGCTGTACTTTCTATAGTGAATAGAGTTAGGCAGGGATACTCACCATTATCGTTTCAGACCCGCTTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGCTCCATTAGTGAAAGGATTCTTAGCACTTATCTGGGTCGATCTACGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATAATAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGTCCTCAAATACTTGTGGAGTCTCCTACAGTATTGGACACAGGAACTAAAGAATAGTGCTGTTAGCTTGCTCAATGCCACAGCCATAGCAGTAGCTGAGGGGACAGATAGGATTATAGAAGTATTACAAAGAGTTTTTAGAGCTATCCTCCATATCCCTACAAGAATAAGACAGGGCTTTGAAAGGGCTTTGCTATAA -MN692145,tat_exon2,8364,8460,8376,8469,forward,0.4866666666666659,RPASQPRGDPTGPKESKKKVERETETDPLH,RPASQPRGDPTGPKESKKKVERETETDPLH**,AGACCCGCTTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGCTCCATTAGTGA -MN692145,rev_exon2,8365,8641,8377,8653,forward,0.2637362637362637,DPLPSPEGTRQARRNRRRRWRERQRQIRSISERILSTYLGRSTEPVPLQLPPLERLTLDNNEDCGTSGTQGVGSPQILVESPTVLDTGTKE,DPLPSPEGTRQARRNRRRRWRERQRQIRSISERILSTYLGRSTEPVPLQLPPLERLTLDNNEDCGTSGTQGVGSPQILVESPTVLDTGTKE*,GACCCGCTTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGCTCCATTAGTGAAAGGATTCTTAGCACTTATCTGGGTCGATCTACGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATAATAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGTCCTCAAATACTTGTGGAGTCTCCTACAGTATTGGACACAGGAACTAAAGAATAG -MN692145,nef,8784,9576,8796,9417,forward,0.3878048780487735,MGGKWSKSSLVGWPNVRERMRRAEPAADGVGAVSRDLERHGAITSSNTATNNADCAWLEAQKEEEVGFPVTPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIHSQKRQDILDLWIYHTQGYFPDWQNYTPGPGVRYPLTFGWCFKLVPVEPTDRENDRLLHPASLQGMEDPEGEVLEWRFDSRLAFHHMARELHPEYYKNC,MGGKWSKSSLVGWPNVRERMRRAEPAADGVGAVSRDLERHGAITSSNTATNNADCAWLEAQKEEEVGFPVTPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIHSQKRQDILDLWIYHTQGYFPDWQNYTPGPGVRYPLTFGWCFKLVPVEPTDRENDRLLHPASLQGMEDPEGEVLEWRFDSRLAFHHMARELHPEYYKNC*HRAFYKGLSAGDFPGEAWPGRGRGVASPQMLHISSCFCLYWVSLVRPDLSLGALWLTREPTA*,ATGGGGGGCAAGTGGTCAAAAAGTAGTTTGGTTGGATGGCCTAATGTAAGGGAAAGAATGAGACGAGCTGAGCCAGCAGCAGATGGGGTGGGAGCAGTATCTCGAGACTTGGAAAGACATGGAGCAATCACAAGTAGTAATACAGCAACTAACAATGCTGATTGTGCCTGGCTAGAAGCACAAAAGGAGGAGGAGGTGGGTTTTCCAGTCACACCTCAGGTACCTTTAAGACCAATGACTTACAAGGCAGCTGTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCACTCCCAAAAAAGACAAGATATTCTTGATCTATGGATCTACCACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGGTCAGATATCCACTGACCTTTGGATGGTGCTTCAAGCTAGTACCAGTTGAGCCCACTGACAGAGAGAATGACAGATTGCTGCACCCTGCAAGCCTGCAGGGGATGGAAGACCCGGAGGGAGAAGTGTTAGAGTGGAGGTTTGACAGCCGCCTGGCATTTCATCACATGGCCCGAGAGCTGCATCCGGAGTACTACAAGAACTGCTGACATCGAGCTTTCTACAAGGGACTTTCCGCTGGGGACTTTCCAGGGGAGGCGTGGCCTGGGCGGGGCAGGGGAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTCTGCCTGTACTGGGTCTCTCTGGTTAGACCAGATCTGAGCCTGGGAGCTCTCTGGCTGACTAGGGAACCCACTGCTTAA -MN090335,gag,315,1665,789,2292,forward,0.8911999999999998,MAYSPVAAPRLLPCALQQATPQDLNTMLNTVGGHQAAMQMLKEVINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQATGTANILMQRGNFRNQRKPVKCFNCGKEGHIAKNCRAPRKKGCWKCGREGHQMKDCTERQANFLGKIWPSHKGRPGNFPQSRPEIPQSRPEPTAPPAPPEESFRFGEATTPSQKQETMDKELYPPLTSLRSLFGNDPSSQ,MYTIEGGYCII**SKFF*SCLKGWL*LFQYLFTAS*CF*QARINCESF*FPACPYYMF*SIFFLSPWP*PNFLPSI*FSPAQY*RSRTHLSPSSLR*SKMAYSPVAAPRLLPCALQQATPQDLNTMLNTVGGHQAAMQMLKEVINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQATGTANILMQRGNFRNQRKPVKCFNCGKEGHIAKNCRAPRKKGCWKCGREGHQMKDCTERQANFLGKIWPSHKGRPGNFPQSRPEIPQSRPEPTAPPAPPEESFRFGEATTPSQKQETMDKELYPPLTSLRSLFGNDPSSQ*,ATGTACACAATAGAGGGTGGCTACTGTATTATATAATGATCTAAGTTCTTCTGATCCTGTCTGAAGGGATGGTTGTAGCTGTTCCAATATCTGTTTACAGCCTCCTGATGTTTCTAACAGGCCAGGATTAACTGCGAATCGTTCTAGTTCCCTGCTTGCCCATACTATATGTTTTAATCTATATTTTTTCTTTCCCCCTGGCCTTAACCGAATTTTCTCCCATCTATCTAATTCTCCCCCGCTCAATACTGACGCTCTCGCACCCATCTCTCTCCTTCTAGCCTCCGCTAGTCAAAAATGGCGTACTCACCAGTCGCCGCCCCTCGCCTCTTGCCGTGCGCGCTTCAGCAAGCCACCCCACAAGATTTGAACACTATGCTAAACACAGTGGGTGGACACCAAGCAGCTATGCAAATGTTAAAAGAGGTCATCAATGAGGAAGCTGCAGAATGGGATAGATTACATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGGATGGATGACACATAATCCACCTATCCCAGTAGGAGAGATTTATAAAAGATGGATAATTCTGGGACTAAATAAAATAGTAAGAATGTATAGCCCTACCAGCATTTTGGACATAAAGCAAGGGCCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAAAACTTTAAGAGCCGAGCAAGCTACACAGGAAGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAGAATGCAAATCCAGATTGTAAAACTATTTTAAAAGCATTAGGACCAGCAGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGGGGACCCGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGCAACAGGTACAGCCAACATACTGATGCAGAGAGGCAATTTTAGGAACCAAAGAAAGCCTGTTAAATGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAGGGAAGGACACCAAATGAAGGATTGCACTGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCTCACAAGGGAAGGCCAGGGAACTTTCCTCAGAGCCGACCAGAAATTCCTCAGAGCAGACCAGAGCCAACAGCCCCACCAGCCCCTCCAGAAGAGAGCTTCAGGTTTGGGGAAGCAACAACTCCCTCTCAGAAGCAGGAGACAATGGACAAGGAGCTGTATCCTCCTCTAACTTCCCTCAGATCACTCTTTGGCAACGACCCATCGTCACAATAA -MN090335,pol,1427,4469,2084,5096,forward,0.2169491525423728,FFRENLAFSQGKARELSSEPTRNSSEQTRANSPTSPSRRELQVWGSNNSLSEAGDNGQGAVSSSNFPQITLWQRPIVTIKIGGQLKEALLDTGADDTVLEDIDLPGKWKPKMIGGIGGFIKVRQYEQVPIEISGHKAIGTVLVGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDGTKWRKLVDFRELNKRTQEFWEIQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKTNPDIVIYQYMDDLYVGSDLEIGQHRTKVEELRQHLMRWGFTTPDKKHQKEPPFLWMGYELHPNKWTVQPIVLPEKESWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGTKALTEVVPLTEEAELELAENREILKDPVHGAYYDPAKDLIAELQKQGEGQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKISTESIVIWGRTPKFRLPIQKETWETWWTDYWQATWIPEWEFVNTPPLVKLWYQLEKEPIIGAETFYVDGAANRDNKSGKAGYVTDRGRQKVVTINDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIEKAQEDHEKYHSNWRTMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEEKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGRNFTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATEIQTKELQKQITKIPNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED,FFRENLAFSQGKARELSSEPTRNSSEQTRANSPTSPSRRELQVWGSNNSLSEAGDNGQGAVSSSNFPQITLWQRPIVTIKIGGQLKEALLDTGADDTVLEDIDLPGKWKPKMIGGIGGFIKVRQYEQVPIEISGHKAIGTVLVGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDGTKWRKLVDFRELNKRTQEFWEIQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKTNPDIVIYQYMDDLYVGSDLEIGQHRTKVEELRQHLMRWGFTTPDKKHQKEPPFLWMGYELHPNKWTVQPIVLPEKESWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGTKALTEVVPLTEEAELELAENREILKDPVHGAYYDPAKDLIAELQKQGEGQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKISTESIVIWGRTPKFRLPIQKETWETWWTDYWQATWIPEWEFVNTPPLVKLWYQLEKEPIIGAETFYVDGAANRDNKSGKAGYVTDRGRQKVVTINDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIEKAQEDHEKYHSNWRTMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEEKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGRNFTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATEIQTKELQKQITKIPNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAAATCTGGCCTTCTCACAAGGGAAGGCCAGGGAACTTTCCTCAGAGCCGACCAGAAATTCCTCAGAGCAGACCAGAGCCAACAGCCCCACCAGCCCCTCCAGAAGAGAGCTTCAGGTTTGGGGAAGCAACAACTCCCTCTCAGAAGCAGGAGACAATGGACAAGGAGCTGTATCCTCCTCTAACTTCCCTCAGATCACTCTTTGGCAACGACCCATCGTCACAATAAAGATAGGGGGGCAACTAAAGGAAGCTTTATTAGATACAGGAGCAGATGATACAGTATTAGAGGACATAGATTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAATATGAACAGGTACCCATAGAAATTAGCGGACACAAAGCTATAGGTACAGTGTTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGCTTGGTTGCACTCTAAATTTTCCCATCAGCCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGACGGCCCAAAGGTTAAACAATGGCCATTAACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTGTTTGCCATAAAGAAAAAAGATGGCACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGAATTCTGGGAAATTCAATTAGGTATACCACATCCTGCAGGGCTAAAAAAGAAAAAATCAGTCACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATAAAGACTTCAGGAAATATACTGCATTTACCATACCTAGTATAAACAATGAGACACCAGGGATTAGATATCAGTATAATGTGCTTCCACAAGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAGATCCTGGAGCCTTTTAGAAAGACAAATCCAGACATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAACATAGAACAAAAGTAGAGGAACTGAGGCAACATCTGATGAGGTGGGGATTTACCACACCAGACAAAAAGCACCAGAAAGAACCCCCATTCCTTTGGATGGGGTATGAACTCCATCCTAATAAATGGACAGTACAGCCTATAGTACTGCCAGAAAAGGAAAGTTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTATGCAGGGATTAAAGTGAAGCAATTATGTAAGCTCCTTAGGGGAACCAAAGCATTAACAGAAGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAGATTCTAAAAGATCCGGTACATGGAGCATATTATGACCCAGCAAAGGACTTAATAGCAGAACTACAGAAGCAGGGAGAAGGTCAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGGAAATATGCAAGAACGAGGGGTGCCCATACTAATGATGTAAAGCAATTAACAGAGGCAGTGCAAAAAATATCCACAGAAAGTATAGTAATATGGGGAAGGACTCCTAAATTTAGATTACCCATACAAAAAGAAACATGGGAAACATGGTGGACAGATTATTGGCAAGCCACCTGGATCCCTGAGTGGGAGTTTGTCAACACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAAAAAGAACCCATAATAGGAGCAGAAACCTTCTATGTAGATGGGGCAGCTAATAGGGATAATAAATCAGGAAAAGCAGGATATGTTACTGATAGAGGAAGACAAAAGGTTGTCACCATAAATGACACAACAAATCAGAAAACTGAATTACAAGCCATTCATCTAGCCTTGCAGGATTCGGGGCTAGAAGTAAACATAGTAACAGACTCACAGTATGCATTAGGGATCATTCAAGCACAACCAGATAAAAGTGAATCAGAGTTAGTCAGTCAAATAATAGAACAGTTAATAAAAAAGGAAAAGGTCTACCTGGCATGGGTGCCAGCCCACAAAGGAATTGGAGGAAATGAACAGGTAGATAAACTAGTCAGTGCTGGAATCAGGAAAGTACTATTTTTAGATGGAATAGAAAAAGCCCAAGAAGACCATGAGAAATATCACAGTAATTGGAGAACAATGGCTAGTGATTTTAACCTACCACCTATAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGAGAAGCTATGCATGGGCAAGTAGACTGTAGTCCAGGTATATGGCAGCTAGATTGTACACATTTAGAAGAAAAAATTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTGATTCCAGCAGAGACAGGGCAAGAAACAGCATACTTTATTTTAAAACTAGCAGGAAGATGGCCAGTAAAAACAATACATACAGACAATGGCCGCAATTTCACCAGTAATACAGTGAAGGCCGCCTGTTGGTGGGCGGGAATCAAGCAGGAATTTGGTATTCCCTACAATCCCCAGAGTCAAGGAGTAGTAGAATCTATGAATAATGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGATACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACAGAAATACAGACTAAAGAATTACAAAAACAAATTACAAAAATTCCAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAACAGTGACATAAAAGTAGTGCCAAGAAGAAAAGCAAAAATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG -MN090335,vif,4413,5001,5040,5619,forward,0.34375,MENRWQVMIVWQVDRMRIRTWKSLVKYHMYISKKAKKWAYRHHYETTHPRISSEVHIPLGDDRLVITTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPDLADHLIHVHYFDCFSESAIRNAILGHRVSPRCEYQAGHNKVGSLQYLALTAVITPKKIKPPLPSVKKLTEDRWNKPQKTKGHRESHTMNGH,MENRWQVMIVWQVDRMRIRTWKSLVKYHMYISKKAKKWAYRHHYETTHPRISSEVHIPLGDDRLVITTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPDLADHLIHVHYFDCFSESAIRNAILGHRVSPRCEYQAGHNKVGSLQYLALTAVITPKKIKPPLPSVKKLTEDRWNKPQKTKGHRESHTMNGH*SF*,ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAAAAGTTTAGTAAAATACCATATGTATATTTCAAAGAAAGCCAAAAAATGGGCTTATAGACACCATTACGAAACCACTCATCCAAGAATAAGTTCAGAAGTACATATCCCACTAGGGGATGATAGATTGGTAATAACAACATATTGGGGTCTGCATACAGGAGAGAGAGACTGGCATTTGGGCCAGGGAGTCTCCATAGAATGGAGAAAAAGGAGATATAGCACACAAGTAGACCCTGACTTAGCAGACCATCTAATTCATGTGCATTATTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACATAGAGTTAGCCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGATCTCTACAATACTTGGCACTAACAGCAGTAATAACACCAAAGAAGATAAAGCCACCTTTGCCTAGTGTAAAGAAACTGACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGAGAGCCATACAATGAATGGACACTAGAGCTTTTAG -MN090335,vpr,4931,5225,5558,5850,forward,0.5192307692307698,MEQAPEDQGPQREPYNEWTLELLEELKREAVRHFPRPWLQDLGQYIYETYGDTWTGVEAIIRILQQMLFIHFRIGCHHSRIGIVLQRRARNGASRS,MEQAPEDQGPQREPYNEWTLELLEELKREAVRHFPRPWLQDLGQYIYETYGDTWTGVEAIIRILQQMLFIHFRIGCHHSRIGIVLQRRARNGASRS*T,ATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGAGAGCCATACAATGAATGGACACTAGAGCTTTTAGAAGAGCTTAAGAGAGAAGCTGTTAGACATTTCCCTAGACCATGGCTACAAGACCTAGGACAATATATCTATGAAACTTATGGGGATACTTGGACAGGAGTGGAAGCCATAATAAGAATTCTGCAACAAATGCTGTTTATTCATTTCAGAATTGGGTGTCACCATAGCAGAATAGGCATTGTTCTGCAAAGAAGAGCAAGAAATGGAGCCAGTAGATCATAGACT -MN090335,tat_exon1,5202,5418,5830,6045,forward,0.45833333333333326,MEPVDHRLEPWKHPGSQPRTPCTNCYCKKCCFHCQVCFIQKALGISYGRKKRRQRRRSPQDSQTHQVPLPKQ,MEPVDHRLEPWKHPGSQPRTPCTNCYCKKCCFHCQVCFIQKALGISYGRKKRRQRRRSPQDSQTHQVPLPKQ,ATGGAGCCAGTAGATCATAGACTAGAGCCCTGGAAGCATCCAGGAAGTCAGCCTAGGACTCCTTGTACCAATTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTGTGTTTTATACAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGAGACGAAGATCTCCTCAAGACAGTCAGACTCATCAAGTTCCTCTACCAAAGCAG -MN090335,rev_exon1,5341,5419,5969,6045,forward,0.6923076923076923,MAGRSGDRDEDLLKTVRLIKFLYQSS,MAGRSGDRDEDLLKTVRLIKFLYQSS,ATGGCAGGAAGAAGCGGAGACAGAGACGAAGATCTCCTCAAGACAGTCAGACTCATCAAGTTCCTCTACCAAAGCAGT -MN090335,vpu,5433,5682,6061,6310,forward,0.6560975609756099,MQSLEILAIVALVVAAIIAIVVWTIVGIEYRKILRQRKIDKIINRIRERAEDSGNESEGDQEELSALVVEMGHDAPWDVDDL,MQSLEILAIVALVVAAIIAIVVWTIVGIEYRKILRQRKIDKIINRIRERAEDSGNESEGDQEELSALVVEMGHDAPWDVDDL*,ATGCAATCTTTAGAGATATTAGCAATAGTAGCATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGACCATAGTAGGCATAGAATATAGGAAAATATTAAGACAAAGAAAAATAGATAAAATAATTAATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGCGAAGGGGATCAGGAAGAATTGTCAGCACTTGTGGTGGAAATGGGGCACGATGCTCCTTGGGATGTTGATGATCTGTAG -MN090335,env,5596,8158,6224,8795,forward,0.6022196261682247,MRAKGIRKNCQHLWWKWGTMLLGMLMICSAAENLWVTVYYGVPVWRDANTTLFCASDAKAYDTEVHNVWATHACVPTDPNPHEVELKNVTENFNMWKNNMVDQMHEDIINLWDQSLKPCAKLTPLCVTLNCTDLRNDTVGNQTNLTETNTIQGREMTNCSFNITTEIRDKVRKEHALFYKLDVMPIDRDNTSYTLINCNTSVITQACPKVTFEPIPIHYCTPAGFAILKCKDEMFNGTGPCKNVSTVQCTHGIRPVVSTQLLLNGSLAEKEIVLRSENFTDNGKNIIVQLNRSIVINCTRPNNNTRKSISVAGRAIYATGQIIGDIRQAHCNISETDWNDTLSKIVEKLREKFGKDKTIIFNQSSGGDMEIETHSFNCGGEFFYCNTTRLFNSTWSVNGTSINGTKNITLPCRIKQIINRWQEVGKAMYAPPISGIIRCSSNITGLILTRDGGTNNSTEETETFRPGGGNMKDNWRSELYKYKVVKIEPLGVAPTKAQRRVVQREKRAIGALGAMFLGFLGAAGSTMGAASLTLTVQARQLLSGIVQQQNNLLRAIEAQQHMLQLTVWGIKQLQARVLSVERYLQDQQLLGIWGCSGKLICTTTVPWNTSWSNKSYDTIWDNMTWMQWDREIQNYTGKIYNLLEESQIQQEKNEKELLELDQWANLWNWFSITKWLWYIKIFIMIVGGLVGLKIIFAVFSIVNRVRQGYSPLSLQTLLPTPRGPDRPEGIEEEGGERDRGRSGRLVTGFLPLIWDDLRSLCLFSYHHLRDLLLIVLRTVQVLGHRGWEILKYWWSLLQYWIQELKNSAVSLLNTIAIAVAEGTDRVIEVGQRIGRAFLHIPRRIRQGLERALQ,MRAKGIRKNCQHLWWKWGTMLLGMLMICSAAENLWVTVYYGVPVWRDANTTLFCASDAKAYDTEVHNVWATHACVPTDPNPHEVELKNVTENFNMWKNNMVDQMHEDIINLWDQSLKPCAKLTPLCVTLNCTDLRNDTVGNQTNLTETNTIQGREMTNCSFNITTEIRDKVRKEHALFYKLDVMPIDRDNTSYTLINCNTSVITQACPKVTFEPIPIHYCTPAGFAILKCKDEMFNGTGPCKNVSTVQCTHGIRPVVSTQLLLNGSLAEKEIVLRSENFTDNGKNIIVQLNRSIVINCTRPNNNTRKSISVAGRAIYATGQIIGDIRQAHCNISETDWNDTLSKIVEKLREKFGKDKTIIFNQSSGGDMEIETHSFNCGGEFFYCNTTRLFNSTWSVNGTSINGTKNITLPCRIKQIINRWQEVGKAMYAPPISGIIRCSSNITGLILTRDGGTNNSTEETETFRPGGGNMKDNWRSELYKYKVVKIEPLGVAPTKAQRRVVQREKRAIGALGAMFLGFLGAAGSTMGAASLTLTVQARQLLSGIVQQQNNLLRAIEAQQHMLQLTVWGIKQLQARVLSVERYLQDQQLLGIWGCSGKLICTTTVPWNTSWSNKSYDTIWDNMTWMQWDREIQNYTGKIYNLLEESQIQQEKNEKELLELDQWANLWNWFSITKWLWYIKIFIMIVGGLVGLKIIFAVFSIVNRVRQGYSPLSLQTLLPTPRGPDRPEGIEEEGGERDRGRSGRLVTGFLPLIWDDLRSLCLFSYHHLRDLLLIVLRTVQVLGHRGWEILKYWWSLLQYWIQELKNSAVSLLNTIAIAVAEGTDRVIEVGQRIGRAFLHIPRRIRQGLERALQ*,ATGAGAGCGAAGGGGATCAGGAAGAATTGTCAGCACTTGTGGTGGAAATGGGGCACGATGCTCCTTGGGATGTTGATGATCTGTAGTGCTGCGGAAAATTTGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAGAGATGCAAATACCACTCTATTCTGTGCATCAGATGCTAAAGCATATGATACAGAAGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCTAACCCACATGAAGTAGAATTGAAAAATGTGACAGAAAATTTTAATATGTGGAAAAATAACATGGTGGACCAGATGCATGAGGATATAATCAATTTATGGGATCAAAGCCTAAAGCCATGTGCAAAATTGACCCCACTCTGTGTTACTTTAAATTGCACTGATTTAAGAAATGATACTGTAGGAAATCAAACAAATCTCACTGAAACTAATACAATACAGGGAAGAGAAATGACAAACTGCTCTTTCAATATCACCACAGAGATAAGAGATAAAGTGCGAAAAGAACATGCACTTTTTTATAAACTTGATGTCATGCCAATAGATAGGGATAATACAAGTTATACATTGATAAATTGCAATACCTCAGTCATTACACAGGCCTGTCCAAAGGTAACCTTTGAACCAATTCCCATACATTATTGTACTCCAGCTGGTTTTGCAATTCTAAAGTGTAAGGATGAGATGTTCAATGGAACAGGACCATGTAAGAATGTCAGCACAGTACAATGTACACATGGAATTAGACCAGTAGTGTCAACTCAACTACTGTTAAATGGTAGCCTAGCAGAAAAAGAGATAGTACTTAGATCTGAAAATTTCACAGACAATGGTAAAAATATAATAGTACAGCTAAATAGATCTATAGTAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAGTGTAGCAGGGAGAGCAATTTATGCAACAGGGCAGATAATAGGAGATATAAGACAAGCACATTGTAACATCAGTGAGACAGATTGGAATGACACTTTAAGCAAAATAGTTGAAAAATTAAGGGAAAAATTTGGAAAAGATAAAACAATAATCTTTAATCAATCATCAGGAGGGGACATGGAAATTGAAACGCACAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAACACAACACGACTGTTTAATAGTACTTGGAGTGTTAATGGAACTAGCATAAACGGAACTAAAAATATCACACTCCCGTGCAGAATAAAACAAATTATAAACAGGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCTATCAGTGGGATAATTAGGTGCTCATCAAATATTACAGGACTAATATTAACAAGAGATGGTGGTACAAATAATAGTACAGAGGAGACGGAGACCTTCAGACCTGGAGGGGGAAATATGAAGGACAATTGGAGAAGTGAATTATATAAATACAAAGTAGTAAAAATTGAGCCATTAGGAGTAGCACCCACCAAGGCACAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAATAGGAGCGTTAGGAGCTATGTTCCTCGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCACTGACGCTGACGGTACAAGCCAGACAATTATTGTCTGGTATAGTGCAACAGCAGAACAATCTGCTGAGGGCTATTGAGGCGCAACAGCATATGTTGCAACTCACAGTCTGGGGCATCAAACAGCTCCAGGCAAGAGTCCTGTCTGTGGAAAGATACCTACAGGATCAACAGCTCCTGGGGATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTACTGTGCCTTGGAATACTAGTTGGAGCAATAAATCTTACGATACCATCTGGGATAACATGACCTGGATGCAGTGGGACAGAGAAATTCAAAATTACACAGGGAAAATATACAACTTACTTGAGGAATCGCAAATCCAACAGGAAAAGAATGAAAAGGAATTATTAGAACTAGATCAATGGGCAAATTTGTGGAATTGGTTTAGTATAACAAAATGGCTGTGGTATATAAAAATATTCATAATGATAGTAGGAGGCTTAGTAGGTTTAAAAATAATTTTTGCTGTATTTTCTATAGTGAATAGAGTTAGGCAGGGATACTCACCATTATCATTGCAGACCCTCCTCCCAACCCCGAGGGGACCAGACAGGCCCGAAGGAATAGAAGAAGAAGGTGGAGAGAGAGACAGAGGCAGATCCGGAAGATTAGTGACTGGATTCTTACCACTCATCTGGGACGACCTGCGGAGCCTGTGCCTCTTCAGCTACCACCACTTGAGAGACTTACTCTTGATTGTGCTGAGGACTGTGCAAGTTCTGGGACACAGGGGGTGGGAGATCCTCAAGTACTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAACTAAAGAATAGTGCTGTTAGCTTGCTCAATACCATAGCTATCGCAGTAGCTGAGGGAACAGATAGGGTTATAGAGGTAGGACAAAGAATTGGCAGAGCTTTTCTCCACATACCTAGAAGGATAAGACAGGGATTAGAAAGGGCTTTGCAATAA -MN090335,tat_exon2,7739,7835,8376,8469,forward,0.3999999999999999,RPSSQPRGDQTGPKE,RPSSQPRGDQTGPKE*KKKVERETEADPED**,AGACCCTCCTCCCAACCCCGAGGGGACCAGACAGGCCCGAAGGAATAGAAGAAGAAGGTGGAGAGAGAGACAGAGGCAGATCCGGAAGATTAGTGA -MN090335,rev_exon2,7740,8016,8377,8653,forward,0.46153846153846145,DPPPNPEGTRQARRNRRRRWRERQRQIRKISDWILTTHLGRPAEPVPLQLPPLERLTLDCAEDCASSGTQGVGDPQVLVESPAVLDSGTKE,DPPPNPEGTRQARRNRRRRWRERQRQIRKISDWILTTHLGRPAEPVPLQLPPLERLTLDCAEDCASSGTQGVGDPQVLVESPAVLDSGTKE*,GACCCTCCTCCCAACCCCGAGGGGACCAGACAGGCCCGAAGGAATAGAAGAAGAAGGTGGAGAGAGAGACAGAGGCAGATCCGGAAGATTAGTGACTGGATTCTTACCACTCATCTGGGACGACCTGCGGAGCCTGTGCCTCTTCAGCTACCACCACTTGAGAGACTTACTCTTGATTGTGCTGAGGACTGTGCAAGTTCTGGGACACAGGGGGTGGGAGATCCTCAAGTACTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAACTAAAGAATAG -MN090335,nef,8159,8819,8796,9417,forward,0.5260162601625942,MGGKWSKGCMAGWPTVRERMERIDPRPAARREQAEPAAAGVGAASRDLEKYGAITSSNTSTTNAACAWLEAQEEEEVGFPVRPQVPLRPMTYKAALDLSHFLKEKGGLEGLIWSQRRQEILDLWVYHTQGYFPDWQNYTPGPGVRFPLTFGWCFKLVPVDPDQVEKANEGENNCLLHPMSLHGMEDSEGEVLMWKFDSSLAFHHRAREQHPEYYKDC,MGGKWSKGCMAGWPTVRERMERIDPRPAARREQAEPAAAGVGAASRDLEKYGAITSSNTSTTNAACAWLEAQEEEEVGFPVRPQVPLRPMTYKAALDLSHFLKEKGGLEGLIWSQRRQEILDLWVYHTQGYFPDWQNYTPGPGVRFPLTFGWCFKLVPVDPDQVEKANEGENNCLLHPMSLHGMEDSEGEVLMWKFDSSLAFHHRAREQHPEYYKDC*H*,ATGGGTGGCAAGTGGTCAAAAGGTTGTATGGCTGGATGGCCTACTGTAAGGGAAAGAATGGAAAGAATTGATCCAAGGCCTGCTGCAAGGAGGGAACAAGCTGAGCCAGCAGCAGCTGGGGTAGGAGCAGCATCTCGAGACTTGGAAAAATATGGAGCAATCACAAGTAGCAATACATCAACTACTAATGCTGCTTGTGCCTGGCTAGAAGCACAAGAGGAGGAGGAAGTAGGCTTTCCAGTCAGACCTCAGGTACCTTTAAGACCAATGACTTACAAAGCAGCTTTGGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTGGTCCCAGAGAAGACAAGAAATCCTTGATTTGTGGGTTTACCACACACAAGGATACTTCCCTGATTGGCAAAACTACACACCAGGACCAGGGGTCAGATTTCCACTGACCTTTGGATGGTGCTTCAAGCTAGTACCAGTTGATCCAGACCAAGTAGAGAAGGCCAATGAAGGAGAGAACAACTGCTTGCTACACCCTATGAGCCTGCATGGGATGGAAGACTCAGAGGGAGAAGTGTTAATGTGGAAGTTTGACAGCAGCCTGGCGTTTCATCATAGAGCCCGAGAACAACATCCGGAGTACTACAAAGACTGCTGACACTGA +KX505501.1,env,0,1824,6224,8795,forward,0.7624372207948004,MGARASVLSGGELDRWEKIRLRPGGNKRYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPTLKTGSEELKSLYNTIAVLYCVHQKIDVKDTKEALDKIEEEQNKIRKQAQQTAAAGSSSQVSHNYPVVQNHQGQMVYQALSPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPSHKARVLAEAMSQMTNSATVMMQKGNFRNQRKTVKCFNCGKEGHIARNCRAPRKKGCWKCGREGHQMKDCTERQANFVGKIWPSHKGRPGNFLQNRPEPTAPPAESFRFGEETPTRCIRSTTRTADTELFTRDFPLGTFQ,GLSG*TRSEPGSSLAN*GTHCLSLNKACLECFK*CVPVCCVTLVTRDPSDPFSQCGKSLAVAPEQGPESERETRGALSTQDSAC*ARAARGEGRRLVSTPKIF*LAEARRREMGARASVLSGGELDRWEKIRLRPGGNKRYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPTLKTGSEELKSLYNTIAVLYCVHQKIDVKDTKEALDKIEEEQNKIRKQAQQTAAAGSSSQVSHNYPVVQNHQGQMVYQALSPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPSHKARVLAEAMSQMTNSATVMMQKGNFRNQRKTVKCFNCGKEGHIARNCRAPRKKGCWKCGREGHQMKDCTERQANFVGKIWPSHKGRPGNFLQNRPEPTAPPAESFRFGEETPTRCIRSTTRTADTELFTRDFPLGTFQ*,GGTCTCTCTGGTTAGACCAGATCTGAGCCTGGGAGCTCTCTGGCTAACTAGGGAACCCACTGCTTAAGCCTCAATAAAGCTTGCCTTGAGTGCTTCAAGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGGTAACTAGAGATCCCTCAGACCCTTTTAGTCAGTGTGGAAAATCTCTAGCAGTGGCGCCCGAACAGGGACCTGAAAGCGAAAGGGAAACCAGAGGAGCTCTCTCGACGCAGGACTCGGCTTGCTGAGCGCGCGCAGCAAGAGGCGAGGGGCGGCGACTGGTGAGTACGCCGAAAATTTTTTGACTAGCGGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAGAATTGGATAGATGGGAAAAAATTCGGCTAAGGCCAGGAGGAAATAAAAGATATAAACTAAAACATATAGTATGGGCAAGCAGAGAGCTAGAACGATTCGCAGTTAATCCTGGCCTGCTAGAAACATCAGAAGGCTGTAGACAAATACTGGGACAGCTACAACCGACTCTTAAGACAGGATCAGAAGAACTTAAGTCTTTGTATAATACAATAGCAGTCCTCTATTGTGTACATCAAAAAATAGATGTGAAAGACACCAAGGAAGCCTTAGACAAGATAGAAGAAGAGCAAAACAAAATTAGGAAACAAGCACAGCAAACCGCAGCTGCAGGAAGTAGCAGTCAGGTCAGCCACAATTACCCTGTAGTGCAGAATCATCAGGGGCAAATGGTATATCAGGCCCTGTCACCAAGAACTTTAAATGCATGGGTAAAAGTAATAGAGGAAAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGACTTAAACACCATGCTAAATACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATTAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGATGACAAATAATCCACCTATCCCAGTAGGAGAGATTTATAAAAGATGGATAATCCTAGGGTTAAATAAAATAGTAAGAATGTATAGCCCTGTCAGCATTCTGGACATAAGACAAGGACCAAAGGAACCTTTTAGAGACTATGTAGACCGGTTCTATAAAACCCTAAGAGCCGAACAAGCCACACAGGAAGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAGAATGCGAACCCAGATTGTAAAACTATTTTAAAAGCATTAGGACCAGCAGCCACACTAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCCAGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAATGACAAATTCAGCTACAGTAATGATGCAGAAAGGCAATTTTAGGAACCAAAGAAAAACTGTTAAGTGCTTCAATTGTGGCAAAGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGAAAAAAGGGCTGTTGGAAATGTGGAAGGGAAGGACATCAAATGAAAGACTGTACTGAGAGACAGGCTAATTTTGTAGGGAAAATCTGGCCTTCCCACAAGGGAAGGCCGGGGAATTTCCTTCAGAACAGACCAGAGCCAACAGCCCCACCAGCAGAGAGCTTCAGGTTTGGGGAAGAGACACCAACTAGATGCATCCGGAGTACTACAAGGACTGCTGACACTGAGCTTTTCACAAGGGACTTTCCGCTGGGGACTTTCCAGTAG +KX505501.1,gag,336,1824,789,2292,forward,0.3687639991855035,MGARASVLSGGELDRWEKIRLRPGGNKRYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPTLKTGSEELKSLYNTIAVLYCVHQKIDVKDTKEALDKIEEEQNKIRKQAQQTAAAGSSSQVSHNYPVVQNHQGQMVYQALSPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPSHKARVLAEAMSQMTNSATVMMQKGNFRNQRKTVKCFNCGKEGHIARNCRAPRKKGCWKCGREGHQMKDCTERQANFVGKIWPSHKGRPGNFLQNRPEPTAPPAESFRFGEETPTRCIRSTTRTADTELFTRDFPLGTFQ,MGARASVLSGGELDRWEKIRLRPGGNKRYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPTLKTGSEELKSLYNTIAVLYCVHQKIDVKDTKEALDKIEEEQNKIRKQAQQTAAAGSSSQVSHNYPVVQNHQGQMVYQALSPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPSHKARVLAEAMSQMTNSATVMMQKGNFRNQRKTVKCFNCGKEGHIARNCRAPRKKGCWKCGREGHQMKDCTERQANFVGKIWPSHKGRPGNFLQNRPEPTAPPAESFRFGEETPTRCIRSTTRTADTELFTRDFPLGTFQ*,ATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAGAATTGGATAGATGGGAAAAAATTCGGCTAAGGCCAGGAGGAAATAAAAGATATAAACTAAAACATATAGTATGGGCAAGCAGAGAGCTAGAACGATTCGCAGTTAATCCTGGCCTGCTAGAAACATCAGAAGGCTGTAGACAAATACTGGGACAGCTACAACCGACTCTTAAGACAGGATCAGAAGAACTTAAGTCTTTGTATAATACAATAGCAGTCCTCTATTGTGTACATCAAAAAATAGATGTGAAAGACACCAAGGAAGCCTTAGACAAGATAGAAGAAGAGCAAAACAAAATTAGGAAACAAGCACAGCAAACCGCAGCTGCAGGAAGTAGCAGTCAGGTCAGCCACAATTACCCTGTAGTGCAGAATCATCAGGGGCAAATGGTATATCAGGCCCTGTCACCAAGAACTTTAAATGCATGGGTAAAAGTAATAGAGGAAAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGACTTAAACACCATGCTAAATACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATTAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGATGACAAATAATCCACCTATCCCAGTAGGAGAGATTTATAAAAGATGGATAATCCTAGGGTTAAATAAAATAGTAAGAATGTATAGCCCTGTCAGCATTCTGGACATAAGACAAGGACCAAAGGAACCTTTTAGAGACTATGTAGACCGGTTCTATAAAACCCTAAGAGCCGAACAAGCCACACAGGAAGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAGAATGCGAACCCAGATTGTAAAACTATTTTAAAAGCATTAGGACCAGCAGCCACACTAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCCAGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAATGACAAATTCAGCTACAGTAATGATGCAGAAAGGCAATTTTAGGAACCAAAGAAAAACTGTTAAGTGCTTCAATTGTGGCAAAGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGAAAAAAGGGCTGTTGGAAATGTGGAAGGGAAGGACATCAAATGAAAGACTGTACTGAGAGACAGGCTAATTTTGTAGGGAAAATCTGGCCTTCCCACAAGGGAAGGCCGGGGAATTTCCTTCAGAACAGACCAGAGCCAACAGCCCCACCAGCAGAGAGCTTCAGGTTTGGGGAAGAGACACCAACTAGATGCATCCGGAGTACTACAAGGACTGCTGACACTGAGCTTTTCACAAGGGACTTTCCGCTGGGGACTTTCCAGTAG +KX505501.1,vif,1306,1927,5040,5619,forward,0.7758782995067214,MRTQIVKLF,MRTQIVKLF*KH*DQQPH*KK**QHAREWEDPAIKQEFWLKQ*AK*QIQLQ**CRKAILGTKEKLLSASIVAKKGT*PEIAGPLEKRAVGNVEGKDIK*KTVLRDRLIL*GKSGLPTREGRGISFRTDQSQQPHQQRASGLGKRHQLDASGVLQGLLTLSFSQGTFRWGLSSRGVAWAGLGSGEPSDAAYKQLLSACTRSLWLDQI*,ATGCGAACCCAGATTGTAAAACTATTTTAAAAGCATTAGGACCAGCAGCCACACTAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCCAGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAATGACAAATTCAGCTACAGTAATGATGCAGAAAGGCAATTTTAGGAACCAAAGAAAAACTGTTAAGTGCTTCAATTGTGGCAAAGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGAAAAAAGGGCTGTTGGAAATGTGGAAGGGAAGGACATCAAATGAAAGACTGTACTGAGAGACAGGCTAATTTTGTAGGGAAAATCTGGCCTTCCCACAAGGGAAGGCCGGGGAATTTCCTTCAGAACAGACCAGAGCCAACAGCCCCACCAGCAGAGAGCTTCAGGTTTGGGGAAGAGACACCAACTAGATGCATCCGGAGTACTACAAGGACTGCTGACACTGAGCTTTTCACAAGGGACTTTCCGCTGGGGACTTTCCAGTAGGGGCGTGGCCTGGGCGGGACTGGGGAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTCTGCCTGTACGAGGTCTCTCTGGTTAGACCAGATCTGA +KX505501.1,nef,1306,1927,8796,9417,forward,0.7756134879067851,MRTQIVKLF,MRTQIVKLF*KH*DQQPH*KK**QHAREWEDPAIKQEFWLKQ*AK*QIQLQ**CRKAILGTKEKLLSASIVAKKGT*PEIAGPLEKRAVGNVEGKDIK*KTVLRDRLIL*GKSGLPTREGRGISFRTDQSQQPHQQRASGLGKRHQLDASGVLQGLLTLSFSQGTFRWGLSSRGVAWAGLGSGEPSDAAYKQLLSACTRSLWLDQI*,ATGCGAACCCAGATTGTAAAACTATTTTAAAAGCATTAGGACCAGCAGCCACACTAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCCAGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAATGACAAATTCAGCTACAGTAATGATGCAGAAAGGCAATTTTAGGAACCAAAGAAAAACTGTTAAGTGCTTCAATTGTGGCAAAGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGAAAAAAGGGCTGTTGGAAATGTGGAAGGGAAGGACATCAAATGAAAGACTGTACTGAGAGACAGGCTAATTTTGTAGGGAAAATCTGGCCTTCCCACAAGGGAAGGCCGGGGAATTTCCTTCAGAACAGACCAGAGCCAACAGCCCCACCAGCAGAGAGCTTCAGGTTTGGGGAAGAGACACCAACTAGATGCATCCGGAGTACTACAAGGACTGCTGACACTGAGCTTTTCACAAGGGACTTTCCGCTGGGGACTTTCCAGTAGGGGCGTGGCCTGGGCGGGACTGGGGAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTCTGCCTGTACGAGGTCTCTCTGGTTAGACCAGATCTGA +KX505501.1,pol,1628,1748,2084,5096,forward,0.7749542207392719,FCRENLAFPQGKAGEFPSEQTRANSPTSRELQVWGRDTN,FCRENLAFPQGKAGEFPSEQTRANSPTSRELQVWGRDTN*,TTTTGTAGGGAAAATCTGGCCTTCCCACAAGGGAAGGCCGGGGAATTTCCTTCAGAACAGACCAGAGCCAACAGCCCCACCAGCAGAGAGCTTCAGGTTTGGGGAAGAGACACCAACTAG +KX505501.1,tat_exon2,1746,1824,8376,8469,forward,0.7737226277372263,RCIRSTTRTADTELFTRDFPLGTFQ,RCIRSTTRTADTELFTRDFPLGTFQ*,AGATGCATCCGGAGTACTACAAGGACTGCTGACACTGAGCTTTTCACAAGGGACTTTCCGCTGGGGACTTTCCAGTAG +KX505501.1,vpu,1747,1927,6061,6310,forward,0.771956580245806,DASGVLQGLLTLSFSQGTFRWGLSSRGVAWAGLGSGEPSDAAYKQLLSACTRSLWLDQI,DASGVLQGLLTLSFSQGTFRWGLSSRGVAWAGLGSGEPSDAAYKQLLSACTRSLWLDQI*,GATGCATCCGGAGTACTACAAGGACTGCTGACACTGAGCTTTTCACAAGGGACTTTCCGCTGGGGACTTTCCAGTAGGGGCGTGGCCTGGGCGGGACTGGGGAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTCTGCCTGTACGAGGTCTCTCTGGTTAGACCAGATCTGA +KX505501.1,rev_exon2,1747,1927,8377,8653,forward,0.7615586171921224,DASGVLQGLLTLSFSQGTFRWGLSSRGVAWAGLGSGEPSDAAYKQLLSACTRSLWLDQI,DASGVLQGLLTLSFSQGTFRWGLSSRGVAWAGLGSGEPSDAAYKQLLSACTRSLWLDQI*,GATGCATCCGGAGTACTACAAGGACTGCTGACACTGAGCTTTTCACAAGGGACTTTCCGCTGGGGACTTTCCAGTAGGGGCGTGGCCTGGGCGGGACTGGGGAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTCTGCCTGTACGAGGTCTCTCTGGTTAGACCAGATCTGA +KX505501.1,vpr,1748,1751,5558,5850,forward,0.7792385647767734,M,M,ATG +KX505501.1,tat_exon1,1748,1751,5830,6045,forward,0.7791629563668745,M,M,ATG +KX505501.1,rev_exon1,1748,1751,5969,6045,forward,0.7774095553714444,M,M,ATG +MN691959,gag,639,2142,789,2292,forward,0.0801186943620179,MGARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALEKIEEEQNKSKKKAQQAAADTGHSNQISQNYPIVQNIQGQVVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNXXXPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRNQRKIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKECTERQANFLGKIWPSYKGRPGNFLQSRPEPTAPPEESFRSGVETTTPSQKQEPIDKELYPLTSLRSLFGNDPSSQ,MGARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALEKIEEEQNKSKKKAQQAAADTGHSNQISQNYPIVQNIQGQVVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNXXXPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRNQRKIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKECTERQANFLGKIWPSYKGRPGNFLQSRPEPTAPPEESFRSGVETTTPSQKQEPIDKELYPLTSLRSLFGNDPSSQ*,ATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAGAATTAGATCGATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAAATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTTAATCCTGGCCTGTTAGAAACATCAGAAGGCTGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAGATCATTATATAATACAGTAGCAACCCTCTATTGTGTGCATCAAAGGATAGAGATAAAAGACACCAAGGAAGCTTTAGAGAAGATAGAGGAAGAGCAAAACAAAAGTAAGAAAAAAGCACAGCAAGCAGCAGCTGACACAGGACACAGCAACCAGATCAGCCAAAATTACCCTATAGTGCAGAACATCCAGGGGCAAGTGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATCAATGAGGAAGCTGCAGAATGGGATAGAGTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGGATGGATGACAAATAATCYWYCTWTCCCAGTAGGAGAAATTTATAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGAATGTATAGCCCTACCAGCATTCTGGACATAAGACAAGGACCAAAAGAACCCTTTAGAGACTATGTAGACCGGTTCTATAAAACTCTAAGAGCCGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAACCCAGATTGTAAGACTATTTTAAAAGCATTGGGACCWGCAGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCCGGCCATAAGGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAACAAATTCAGCTACCATAATGATGCAGAGAGGCAATTTTAGGAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGAGTGTACTGAGAGACAGGCTAATTTTTTAGGGAAGATCTGGCCTTCCTACAAGGGAAGGCCAGGGAATTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTCTGGGGTAGAGACAACAACTCCCTCTCAGAAGCAGGAGCCGATAGACAAGGAACTGTATCCTTTAACTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAA +MN691959,pol,1934,4946,2084,5096,forward,0.054722889368558514,FFREDLAFLQGKAREFSSEQTRANSPTRRELQVWGRDNNSLSEAGADRQGTVSFNFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTRALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKITTESIVIWGKTPRFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKILFLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED,FFREDLAFLQGKAREFSSEQTRANSPTRRELQVWGRDNNSLSEAGADRQGTVSFNFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTRALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKITTESIVIWGKTPRFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKILFLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAGATCTGGCCTTCCTACAAGGGAAGGCCAGGGAATTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTCTGGGGTAGAGACAACAACTCCCTCTCAGAAGCAGGAGCCGATAGACAAGGAACTGTATCCTTTAACTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACTCATAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGATTGGTTGCACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAAAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCCGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATGAAGACTTCAGGAAGTATACTGCATTTACCATACCTAGTATAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGACATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAGCTGAGACAACATCTGTTGAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTGAATTGGGCAAGTCAGATTTACCCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAGAGCATTAACAGAAGTAATACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTCTAAAAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAGCAGGGGCAAGGCCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGGAAATATGCAAGAACGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGTATAGTAATATGGGGAAAGACTCCTAGATTTAAACTACCCATACAAAAGGAAACATGGGAAACATGGTGGACAGAATATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCTTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGGTATGTTACTAACAAAGGAAGACAAAAGGTTGTCCCCCTAACTAACACAACAAATCAGAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATCAAAGTGAATCAGAGTTAGTCAATCAAATAATAGAGCAGTTAATAAAAAAGGAAAAGGTCTATCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTGCTGGAATCAGGAAAATACTATTTTTAGATGGAATAGATAAGGCCCAAGATGAACATGAGAAATATCACAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGAGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAACTAGATTGTACACATTTAGAAGGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAAACAGGGCAGGAAACAGCATATTTTCTTTTAAAATTAGCAGGAAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTGCTACGGTTAAGGCCGCCTGTTGGTGGGCGGGAATCAAGCAGGAATTTGGAATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTCCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGACATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG +MN691959,vif,4890,5469,5040,5619,forward,0.09157509157509158,MENRWQVMIVWQVDRMRIRTWKSLVKHHMYVSGKARGWFYRHHYERTHPRISSEVYIPLGDARLVITTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPELADQLIHLYYFDCFSDSAIRKALLGHIVSPRCEYQAGHNKVGSLQYLALAALITPKKIKPPLPSVTKLTEDRWNKPQKTKGHRGSHTMNGH,MENRWQVMIVWQVDRMRIRTWKSLVKHHMYVSGKARGWFYRHHYERTHPRISSEVYIPLGDARLVITTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPELADQLIHLYYFDCFSDSAIRKALLGHIVSPRCEYQAGHNKVGSLQYLALAALITPKKIKPPLPSVTKLTEDRWNKPQKTKGHRGSHTMNGH*,ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAAAAGTTTAGTAAAACACCATATGTATGTTTCAGGGAAAGCTAGGGGATGGTTTTATAGACATCACTATGAAAGAACTCATCCAAGAATAAGTTCAGAAGTATACATCCCACTAGGGGATGCTAGATTGGTAATAACAACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGGAAAAGGAGATATAGCACACAAGTAGACCCTGAACTAGCAGACCAACTAATTCATCTGTATTACTTTGACTGTTTTTCAGACTCTGCTATAAGAAAGGCCTTATTAGGACATATAGTTAGCCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGATCTCTACAATACTTGGCACTAGCAGCATTAATAACACCAAAAAAGATAAAGCCACCTTTGCCTAGTGTTACAAAACTGACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCACACAATGAATGGACACTAG +MN691959,vpr,5408,5702,5558,5850,forward,0.2543940795559648,MEQAPEDQGPQREPHNEWTLELLEELKNEAVRHFPRIWLHGLGQHIYETYGDTWAGVEAIIRILQQLLFIHFRIGCRHSRIGVTQQKRARNGASRS,MEQAPEDQGPQREPHNEWTLELLEELKNEAVRHFPRIWLHGLGQHIYETYGDTWAGVEAIIRILQQLLFIHFRIGCRHSRIGVTQQKRARNGASRS*T,ATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCACACAATGAATGGACACTAGAGCTTTTAGAGGAGCTTAAGAATGAAGCTGTTAGACATTTTCCTAGGATTTGGCTCCATGGCTTAGGGCAACATATCTATGAAACTTATGGGGATACTTGGGCAGGAGTGGAAGCCATAATAAGAATTCTGCAACAACTGCTGTTTATCCATTTCAGAATTGGGTGTCGACATAGCAGAATAGGCGTTACTCAACAGAAGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACT +MN691959,tat_exon1,5679,5895,5830,6045,forward,0.31992687385740404,MEPVDPRLEPWKHPGSQPKTACTTCYCKKCCFHCQVCFMTKALGISYGRKKRRQRRRPPQDSQTHQVSLSKQ,MEPVDPRLEPWKHPGSQPKTACTTCYCKKCCFHCQVCFMTKALGISYGRKKRRQRRRPPQDSQTHQVSLSKQ,ATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCATCCAGGAAGTCAGCCTAAAACTGCTTGTACCACTTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATGACAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGACCTCCTCAAGACAGTCAGACTCATCAAGTTTCTCTATCAAAGCAG +MN691959,rev_exon1,5818,5896,5969,6045,forward,0.48200514138817474,MAGRSGDSDEDLLKTVRLIKFLYQSS,MAGRSGDSDEDLLKTVRLIKFLYQSS,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGACCTCCTCAAGACAGTCAGACTCATCAAGTTTCTCTATCAAAGCAGT +MN691959,vpu,5910,6156,6061,6310,forward,0.53246275519588,SIVIIEYRKILRQRKIDRLIDRLIERAEDSGNESEGEVSALVEMGVEMGHHAPWDIDDL,MQPIQIAIVALVVAIIIAIVV*SIVIIEYRKILRQRKIDRLIDRLIERAEDSGNESEGEVSALVEMGVEMGHHAPWDIDDL*,ATGCAACCTATACAAATAGCAATAGTAGCATTAGTAGTAGCAATAATAATAGCAATAGTTGTGTGATCCATAGTAATCATAGAATATAGGAAAATATTAAGACAAAGGAAAATAGACAGGTTAATTGATAGACTAATAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGAGAAGTGTCAGCACTTGTGGAGATGGGGGTGGAGATGGGGCACCATGCTCCTTGGGATATTGATGATCTGTAG +MN691959,env,6070,8683,6224,8795,forward,0.12280585765759788,MRVKEKCQHLWRWGWRWGTMLLGILMICSATEKLWVTVYYGVPVWKEATTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEVVLVNVTENFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVSLKCTDLGNATNTNSSNTNSSSGEMMMEKGEIKNCSFNISTSIRNKVQKEYAFFYKLDIVPIDNDTTSYTLTSCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNNKTFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEDVVIRSANFTDNAKTIIVQLNQSVEINCTRPNNNTRKSIRIQRGPGRAFVTIGKIGNMRQAHCNISRAKWNATLKQIASKLREQFGNNKTIIFKQSSGGDPEIVTHSFNCGGEFFYCNSTQLFNSTWFNSTWSTEGSNNTEGSDTITLPCRIKQFINMWQEVGKAMYAPPISGQIRCSSNITGLLLTRDGGNNNNGSEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQREKRAVGIGALFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARILAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKSLEQIWNNMTWMEWDREINNYTSLIHSLIEESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGGLVGLRIVFAVLSIVNRVRQGYSPLSFQTHLPNPGGPDRPEGIEEEGGERDRDRSIRLVNGSLALIWDDLRSLCLFSYHRLRDLLLIVTRIVELLGRRGWEALKYWWNLLQYWSQELKNSAVSLLNATAIAVAEGTDRVIEVVQGAYRAIRHIPRRIRQGLERILL,MRVKEKCQHLWRWGWRWGTMLLGILMICSATEKLWVTVYYGVPVWKEATTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEVVLVNVTENFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVSLKCTDLGNATNTNSSNTNSSSGEMMMEKGEIKNCSFNISTSIRNKVQKEYAFFYKLDIVPIDNDTTSYTLTSCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNNKTFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEDVVIRSANFTDNAKTIIVQLNQSVEINCTRPNNNTRKSIRIQRGPGRAFVTIGKIGNMRQAHCNISRAKWNATLKQIASKLREQFGNNKTIIFKQSSGGDPEIVTHSFNCGGEFFYCNSTQLFNSTWFNSTWSTEGSNNTEGSDTITLPCRIKQFINMWQEVGKAMYAPPISGQIRCSSNITGLLLTRDGGNNNNGSEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQREKRAVGIGALFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARILAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKSLEQIWNNMTWMEWDREINNYTSLIHSLIEESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGGLVGLRIVFAVLSIVNRVRQGYSPLSFQTHLPNPGGPDRPEGIEEEGGERDRDRSIRLVNGSLALIWDDLRSLCLFSYHRLRDLLLIVTRIVELLGRRGWEALKYWWNLLQYWSQELKNSAVSLLNATAIAVAEGTDRVIEVVQGAYRAIRHIPRRIRQGLERILL*DGWQVVKK*,ATGAGAGTGAAGGAGAAGTGTCAGCACTTGTGGAGATGGGGGTGGAGATGGGGCACCATGCTCCTTGGGATATTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAAGGAAGCAACCACCACTCTATTTTGTGCATCAGATGCTAAAGCATATGATGCAGAGGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGTATTGGTAAATGTGACAGAAAATTTTAACATGTGGAAAAATGACATGGTAGAACAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTAGTTTAAAGTGCACTGATTTGGGGAATGCTACTAATACCAATAGTAGTAATACCAATAGTAGTAGCGGGGAAATGATGATGGAGAAAGGAGAGATAAAAAACTGCTCTTTCAATATCAGCACAAGCATAAGAAATAAGGTGCAGAAAGAATATGCATTCTTTTATAAACTTGATATAGTACCAATAGATAATGATACTACCAGCTATACGTTGACAAGTTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAATGTAATAATAAGACGTTCAATGGAACAGGACCATGTACAAATGTCAGCACAGTACAATGTACACATGGAATTAGGCCAGTAGTATCAACTCAACTGCTGTTAAATGGCAGTCTAGCAGAAGAAGATGTAGTAATTAGATCTGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTGAACCAATCTGTAGAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATCCGTATCCAGAGAGGACCAGGGAGAGCATTTGTTACAATAGGAAAAATAGGAAATATGAGACAAGCACATTGTAACATTAGTAGAGCAAAATGGAATGCCACTTTAAAACAGATAGCTAGCAAATTAAGAGAACAATTTGGAAATAATAAAACAATAATCTTTAAGCAATCCTCAGGAGGGGACCCAGAAATTGTAACGCACAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAATTCAACACAACTGTTTAATAGTACTTGGTTTAATAGTACTTGGAGTACTGAAGGGTCAAATAACACTGAAGGAAGTGACACAATCACACTCCCATGCAGAATAAAACAATTTATAAACATGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCATCAGCGGACAAATTAGATGTTCATCAAATATTACAGGGCTGCTATTAACAAGAGATGGTGGTAATAACAACAATGGGTCCGAGATCTTCAGACCTGGAGGAGGAGATATGAGGGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAAAATTGAACCATTAGGAGTAGCACCCACCAAGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTTTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAATGACGCTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAGCAGCAGAACAATTTGCTGAGGGCTATTGAGGCGCAACAGCATCTGTTGCAACTCACAGTCTGGGGCATCAAACAGCTCCAGGCAAGAATCCTGGCTGTGGAAAGATACCTAAAGGATCAACAGCTCCTGGGGATTTGGGGCTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCTTGGAATGCTAGTTGGAGTAATAAATCTCTGGAACAGATTTGGAATAACATGACCTGGATGGAGTGGGACAGAGAAATTAACAATTACACAAGCTTAATACACTCCTTAATTGAAGAATCGCAAAACCAGCAAGAAAAGAATGAACAAGAATTATTGGAATTAGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAATTGGCTGTGGTATATAAAATTATTCATAATGATAGTAGGAGGCTTGGTAGGTTTAAGAATAGTTTTTGCTGTACTTTCTATAGTGAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAAACCCGGGGGGACCCGACAGGCCCGAAGGAATAGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCATTCGATTAGTGAACGGATCCTTAGCACTTATCTGGGACGATCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAATATTGGTGGAATCTCCTACAATATTGGAGTCAGGAGCTAAAGAATAGTGCTGTTAGCTTGCTCAATGCCACAGCTATAGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAGGAGCTTATAGAGCTATTCGCCACATACCTAGAAGAATAAGACAGGGCTTGGAAAGGATTTTGCTATAAGATGGGTGGCAAGTGGTCAAAAAGTAG +MN691959,tat_exon2,8237,8333,8376,8469,forward,0.24390243902439024,RPTSQTRGDPTGPKE,RPTSQTRGDPTGPKE*KKKVERETETDPFD**,AGACCCACCTCCCAAACCCGGGGGGACCCGACAGGCCCGAAGGAATAGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCATTCGATTAGTGA +MN691959,rev_exon2,8238,8514,8377,8653,forward,0.210025203024363,DPPPKPGGTRQARRNRRRRWRERQRQIHSISERILSTYLGRSAEPVPLQLPPLERLTLDCNEDCGTSGTQGVGSPQILVESPTILESGAKE,DPPPKPGGTRQARRNRRRRWRERQRQIHSISERILSTYLGRSAEPVPLQLPPLERLTLDCNEDCGTSGTQGVGSPQILVESPTILESGAKE*,GACCCACCTCCCAAACCCGGGGGGACCCGACAGGCCCGAAGGAATAGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCATTCGATTAGTGAACGGATCCTTAGCACTTATCTGGGACGATCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAATATTGGTGGAATCTCCTACAATATTGGAGTCAGGAGCTAAAGAATAG +MN691959,nef,8657,9278,8796,9417,forward,0.21510909839439352,MGGKWSKSSVIGWPTVRERMRRAEPAADGVGAASRDLEKHGAITSSNTAATNAACAWLEAQEEEEVGFPVTPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIHSQRRQDILDLWIYHTQGYFPDWQNYTPGPGIRYPLTFGWCYKLVPVEPDKVEEANKGENTSLLHPVSLHGMDDPEREVLEWRFDSRLAFHHVARELHPEYFKNC,MGGKWSKSSVIGWPTVRERMRRAEPAADGVGAASRDLEKHGAITSSNTAATNAACAWLEAQEEEEVGFPVTPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIHSQRRQDILDLWIYHTQGYFPDWQNYTPGPGIRYPLTFGWCYKLVPVEPDKVEEANKGENTSLLHPVSLHGMDDPEREVLEWRFDSRLAFHHVARELHPEYFKNC*,ATGGGTGGCAAGTGGTCAAAAAGTAGTGTGATTGGATGGCCTACTGTAAGGGAAAGAATGAGACGAGCTGAGCCAGCAGCAGATGGGGTGGGAGCAGCATCTCGAGACCTGGAAAAACATGGAGCAATCACAAGTAGCAATACAGCAGCTACCAATGCTGCTTGTGCCTGGCTAGAAGCACAAGAGGAGGAGGAGGTGGGTTTTCCAGTCACACCTCAGGTACCTTTAAGACCAATGACTTACAAGGCAGCTGTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCACTCCCAAAGAAGACAAGATATCCTTGATCTGTGGATCTACCACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGATCAGATATCCATTGACCTTTGGATGGTGCTACAAGCTAGTACCAGTTGAGCCAGATAAGGTAGAAGAGGCCAATAAAGGAGAGAACACCAGCTTGTTACACCCTGTGAGCCTGCATGGAATGGATGACCCTGAGAGAGAAGTGTTAGAGTGGAGGTTTGACAGCCGCCTAGCATTTCATCACGTGGCCCGAGAGCTGCATCCGGAGTACTTCAAGAACTGCTGA +MN692074,env,2,4115,6224,8795,forward,0.7595309512374151,MNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLRKKKSVTVLDVGDAYFSVPLDKEFRKYTAFTIPSRNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPEIVIYQYMDDLYVGSDLEIGQHRIKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEIVPLTKEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYAKMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDTQWRALRCCI,EGLIWSQKRQDILDLWIYHTQGYFPDWQNYTPGPGTRFPLTFGWCFKLVPVDPEKVEEANAGENNSLLHPISLHGMEDPEKEVLMWKFDSRLAFHHMARELHPEYYKNC*LRAIYKGLSAGDFPGRRGLGGTGEWRALRCCI*AAAFCLYWVSLVRPDLSLGALWLAREPTA*ASIKLALSALSSVCPSVV*LW*LEIPQTLLVSVENL*QWRPNRDLKAKEKPEELSRRRTRLAEARTARGEGRRLVSTPKILTSGG*KERDGCESVSIKCGRIRQMGKNSVKARGKEKI*IKTYSMGKQGARTIRS*SWPVRNIRRL*TNTGTATTIPSDRIRRT*III*YNSNPLLCASKDRGKRHQGSFREGRGRAKQK*EKGTASSS*HRKQQPGQPKLPYSAEHPGANGTSGHIT*NFKCMGKSSRREGFQPRSNTHVFSIIRRSHPTRFKHHAKHSGGTSSSHANVKRDHQ*GSCRMG*IAPSACRAYCTRPDERAKGK*HSRNY*YPSGTNRMDDK*STYPSRRNL*KMDNHGIK*NSKDV*SYQHSGHKTRTKGTL*RLCRSVL*NSKSRASFTGGKKLDDRNLVGPKCEPRL*DYFESIGTSRYIRRNDDSMSGSGRTRP*SKSFGGSNEPSNKFSYHNDAERQF*EPKKEC*VFQLWQRRAHSQKLQGP*EKGLLEMWKGRTPNERLY*ETG*FFREDLAFPQGKAREFPSEQTRANSPTRRELQVWGRDNNSRSEAGADRQGTVSFSFPQITLWQRPLVTIRIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLRKKKSVTVLDVGDAYFSVPLDKEFRKYTAFTIPSRNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPEIVIYQYMDDLYVGSDLEIGQHRIKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEIVPLTKEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYAKMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDTQWRALRCCI*,GAAGGGCTAATTTGGTCCCAGAAAAGACAAGATATCCTTGATCTGTGGATCTACCACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCGGGGACCAGATTTCCACTGACCTTTGGATGGTGCTTCAAGCTAGTACCAGTTGATCCAGAGAAGGTAGAAGAGGCCAATGCAGGAGAGAACAACAGCTTGTTACACCCTATAAGCCTGCATGGGATGGAGGACCCGGAGAAAGAAGTGTTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCACATGGCCCGAGAGCTGCATCCGGAGTACTACAAGAATTGCTGACTTCGAGCTATCTACAAGGGACTTTCCGCTGGGGACTTTCCAGGGAGGCGTGGCCTGGGCGGGACTGGGGAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTTTGCCTGTACTGGGTCTCTCTGGTTAGACCAGATCTGAGCCTGGGAGCTCTCTGGCTAGCTAGGGAACCCACTGCTTAAGCCTCAATAAAGCTTGCCTTGAGTGCTTTAAGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGGTAACTAGAGATCCCTCAGACCCTTTTAGTCAGTGTGGAAAATCTCTAGCAGTGGCGCCCGAACAGGGACTTGAAAGCGAAAGAGAAACCAGAGGAGCTCTCTCGACGCAGGACTCGGCTTGCTGAAGCGCGCACGGCAAGAGGCGAGGGGCGGCGACTGGTGAGTACGCCAAAAATTTTGACTAGCGGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCGTCAGTATTAAGTGCGGGAGAATTAGACAAATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTTAATCCTGGCCTGTTAGAAACATCAGAAGGCTGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAGATCATTATATAATACAATAGCAACCCTCTATTGTGTGCATCAAAAGATAGAGGTAAAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGCAGCAGCTGACACAGGAAACAACAGCCAGGTCAGCCAAAATTACCCTATAGTGCAGAACATCCAGGGGCAAATGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCACCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAGCCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGGATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCATGGGATTAAATAAAATAGTAAGGATGTATAGTCCTACCAGCATTCTGGACATAAGACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGATCGGTTCTATAAAACTCTAAGAGCCGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAACCCAGATTGTAAGACTATTTTGAAAGCATTGGGACCAGCCGCTACATTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCCGGCCATAAAGCAAGAGTTTTGGCGGAAGCAATGAGCCAAGTAACAAATTCAGCTACCATAATGATGCAGAAAGGCAATTTTAGGAACCAAAAAAGGAATGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGGAAAAGGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGATTGTACTGAGAGACAGGCTAATTTTTTAGGGAAGATCTGGCCTTCCCACAAGGGAAGGCCAGGGAATTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAACAACTCCCGCTCAGAAGCAGGAGCCGATAGACAAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAAGGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAATTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACTCATAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGATTGGTTGCACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCCGCAGGGTTAAGAAAGAAAAAATCAGTAACAGTACTGGATGTGGGGGATGCATATTTTTCAGTTCCCTTAGATAAAGAATTTAGGAAATATACTGCATTTACCATACCCAGTAGAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATTTTAGAGCCTTTTAGAAAACAAAATCCAGAAATAGTTATCTATCAATACATGGATGATTTATATGTAGGATCTGATTTAGAAATAGGGCAGCATAGAATAAAAATAGAGGAACTGAGACAACATCTGTTGAGATGGGGATTTACCACACCAGACAAAAAACATCAGAAAGAACCCCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTGAATTGGGCAAGTCAGATTTACCCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAAATAGTACCACTAACAAAAGAAGCAGAGCTGGAACTGGCAGAAAACAGGGAAATTCTAAAAGAACCAGTACATGGAGTATATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAGCAGGGGCAAGGTCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAAAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTACCCATACAAAAAGAAACATGGGAAGCATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAACAGAGGAAGACAAAAAGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAATTACAAGCAATTCATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATACCCAGTGGCGAGCCCTCAGATGCTGCATATAA +MN692074,gag,789,2292,789,2292,forward,0.18292040063257775,MGARASVLSAGELDKWEKIRLRPGGKKKYRLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTIATLYCVHQKIEVKDTKEALEKVEEEQNKSKKKAQQAAADTGNNSQVSQNYPIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIIMGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSATIMMQKGNFRNQKRNVKCFNCGKEGHIARNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETTTPAQKQEPIDKELYPLASLRSLFGNDPSSQ,MGARASVLSAGELDKWEKIRLRPGGKKKYRLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTIATLYCVHQKIEVKDTKEALEKVEEEQNKSKKKAQQAAADTGNNSQVSQNYPIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIIMGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSATIMMQKGNFRNQKRNVKCFNCGKEGHIARNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETTTPAQKQEPIDKELYPLASLRSLFGNDPSSQ*,ATGGGTGCGAGAGCGTCAGTATTAAGTGCGGGAGAATTAGACAAATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTTAATCCTGGCCTGTTAGAAACATCAGAAGGCTGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAGATCATTATATAATACAATAGCAACCCTCTATTGTGTGCATCAAAAGATAGAGGTAAAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGCAGCAGCTGACACAGGAAACAACAGCCAGGTCAGCCAAAATTACCCTATAGTGCAGAACATCCAGGGGCAAATGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCACCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAGCCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGGATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCATGGGATTAAATAAAATAGTAAGGATGTATAGTCCTACCAGCATTCTGGACATAAGACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGATCGGTTCTATAAAACTCTAAGAGCCGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAACCCAGATTGTAAGACTATTTTGAAAGCATTGGGACCAGCCGCTACATTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCCGGCCATAAAGCAAGAGTTTTGGCGGAAGCAATGAGCCAAGTAACAAATTCAGCTACCATAATGATGCAGAAAGGCAATTTTAGGAACCAAAAAAGGAATGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGGAAAAGGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGATTGTACTGAGAGACAGGCTAATTTTTTAGGGAAGATCTGGCCTTCCCACAAGGGAAGGCCAGGGAATTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAACAACTCCCGCTCAGAAGCAGGAGCCGATAGACAAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAA +MN692074,pol,2084,4115,2084,5096,forward,0.5606657906263733,FFREDLAFPQGKAREFPSEQTRANSPTRRELQVWGRDNNSRSEAGADRQGTVSFSFPQITLWQRPLVTIRIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLRKKKSVTVLDVGDAYFSVPLDKEFRKYTAFTIPSRNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPEIVIYQYMDDLYVGSDLEIGQHRIKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEIVPLTKEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYAKMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDTQWRALRCCI,FFREDLAFPQGKAREFPSEQTRANSPTRRELQVWGRDNNSRSEAGADRQGTVSFSFPQITLWQRPLVTIRIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLRKKKSVTVLDVGDAYFSVPLDKEFRKYTAFTIPSRNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPEIVIYQYMDDLYVGSDLEIGQHRIKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEIVPLTKEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYAKMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDTQWRALRCCI*,TTTTTTAGGGAAGATCTGGCCTTCCCACAAGGGAAGGCCAGGGAATTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAACAACTCCCGCTCAGAAGCAGGAGCCGATAGACAAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAAGGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAATTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACTCATAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGATTGGTTGCACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCCGCAGGGTTAAGAAAGAAAAAATCAGTAACAGTACTGGATGTGGGGGATGCATATTTTTCAGTTCCCTTAGATAAAGAATTTAGGAAATATACTGCATTTACCATACCCAGTAGAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATTTTAGAGCCTTTTAGAAAACAAAATCCAGAAATAGTTATCTATCAATACATGGATGATTTATATGTAGGATCTGATTTAGAAATAGGGCAGCATAGAATAAAAATAGAGGAACTGAGACAACATCTGTTGAGATGGGGATTTACCACACCAGACAAAAAACATCAGAAAGAACCCCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTGAATTGGGCAAGTCAGATTTACCCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAAATAGTACCACTAACAAAAGAAGCAGAGCTGGAACTGGCAGAAAACAGGGAAATTCTAAAAGAACCAGTACATGGAGTATATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAGCAGGGGCAAGGTCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAAAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTACCCATACAAAAAGAAACATGGGAAGCATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAACAGAGGAAGACAAAAAGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAATTACAAGCAATTCATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATACCCAGTGGCGAGCCCTCAGATGCTGCATATAA +MN692074,vif,3617,4115,5040,5619,forward,0.7630761882015763,MRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDTQWRALRCCI,MRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDTQWRALRCCI*,ATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTACCCATACAAAAAGAAACATGGGAAGCATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAACAGAGGAAGACAAAAAGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAATTACAAGCAATTCATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATACCCAGTGGCGAGCCCTCAGATGCTGCATATAA +MN692074,vpr,3617,4085,5558,5850,forward,0.7597138030408427,MRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDT,MRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDT,ATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTACCCATACAAAAAGAAACATGGGAAGCATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAACAGAGGAAGACAAAAAGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAATTACAAGCAATTCATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATACC +MN692074,nef,3617,4115,8796,9417,forward,0.7601585105044659,MRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDTQWRALRCCI,MRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDTQWRALRCCI*,ATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTACCCATACAAAAAGAAACATGGGAAGCATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAACAGAGGAAGACAAAAAGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAATTACAAGCAATTCATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATACCCAGTGGCGAGCCCTCAGATGCTGCATATAA +MN692074,tat_exon1,3823,4084,5830,6045,forward,0.7660867742611612,MVPVRERTHSRSRNLLCRWGS,MVPVRERTHSRSRNLLCRWGS*QGD*IRKSRICY*QRKTKSCLPN*HNKSED*ITSNSSSFAGFGIRSKHSNRLTICIRNHSSTTRY,ATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAACAGAGGAAGACAAAAAGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAATTACAAGCAATTCATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATAC +MN692074,rev_exon1,3823,4084,5969,6045,forward,0.7647402218330415,MVPVRERTHSRSRNLLCRWGS,MVPVRERTHSRSRNLLCRWGS*QGD*IRKSRICY*QRKTKSCLPN*HNKSED*ITSNSSSFAGFGIRSKHSNRLTICIRNHSSTTRY,ATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAACAGAGGAAGACAAAAAGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAATTACAAGCAATTCATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATAC +MN692074,vpu,4080,4164,6061,6310,forward,0.7715466882358227,IPSGEPSDAAYKQLLFACTGSLWLDQI,IPSGEPSDAAYKQLLFACTGSLWLDQI*,ATACCCAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTTTGCCTGTACTGGGTCTCTCTGGTTAGACCAGATCTGA +MN692074,tat_exon2,4080,4164,8376,8469,forward,0.7731707317073171,IPSGEPSDAAYKQLLFACTGSLWLDQI,IPSGEPSDAAYKQLLFACTGSLWLDQI*,ATACCCAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTTTGCCTGTACTGGGTCTCTCTGGTTAGACCAGATCTGA +MN692074,rev_exon2,4080,4164,8377,8653,forward,0.7691678258734964,IPSGEPSDAAYKQLLFACTGSLWLDQI,IPSGEPSDAAYKQLLFACTGSLWLDQI*,ATACCCAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTTTGCCTGTACTGGGTCTCTCTGGTTAGACCAGATCTGA +MN692145,gag,775,2287,789,2292,forward,0.20410783055198978,MGARASVLSGGKLDQWEKIRLRPGGKKKYQLKHIVWASKELERFAVNPGLLETTEGCRQILGQLQPSLQTGSEELKSLYNTVATLYCVHQRIDVKDTKEALDKIEEEQNKSKEKAKQAAADTGNSNQVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKESFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPGATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRSQRKIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETTTPSQKQESTGKELYPPLASLRSLFGNDPSSQ,MGARASVLSGGKLDQWEKIRLRPGGKKKYQLKHIVWASKELERFAVNPGLLETTEGCRQILGQLQPSLQTGSEELKSLYNTVATLYCVHQRIDVKDTKEALDKIEEEQNKSKEKAKQAAADTGNSNQVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKESFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPGATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRSQRKIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETTTPSQKQESTGKELYPPLASLRSLFGNDPSSQ*R*,ATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAAAATTAGATCAATGGGAGAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATCAATTAAAACATATAGTATGGGCAAGCAAGGAACTAGAACGATTTGCAGTTAATCCTGGCCTGTTAGAAACAACAGAAGGATGTAGACAAATACTGGGACAGCTACAACCATCTCTTCAGACAGGATCAGAAGAACTTAAATCATTATATAATACAGTAGCAACCCTCTATTGTGTGCATCAAAGGATAGATGTAAAAGACACCAAGGAAGCATTAGATAAGATAGAGGAAGAGCAAAACAAGAGTAAGGAAAAAGCAAAACAAGCAGCAGCTGACACAGGAAACAGCAACCAGGTCAGCCAAAATTACCCTATAGTGCAGAACCTTCAGGGCCAAATGGTACACCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAATAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAATACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGAGTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACCACTAGTACCCTTCAGGAACAAATAGGATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGGATGTATAGTCCTACCAGCATTCTGGATATAAGACAAGGACCAAAAGAATCCTTTAGAGATTATGTAGACCGGTTCTACAAAACTCTAAGAGCTGAGCAAGCCTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATTCAAACCCAGATTGTAAGACTATCTTAAAAGCATTGGGACCAGGAGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCCGGCCATAAAGCAAGAGTCTTGGCTGAAGCAATGAGCCAAGTAACAAATTCAGCTACCATAATGATGCAGAGAGGCAATTTTAGGAGCCAAAGGAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAGGGGCATATAGCCAGAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGATTGTACTGAAAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGGAGGCCAGGAAATTTCCTTCAGAGCAGGCCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAACAACTCCCTCTCAGAAGCAGGAGTCGACAGGCAAGGAACTGTATCCTCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAG +MN692145,pol,2070,5085,2084,5096,forward,0.14621890274040306,FFRENLAFPQGEARKFPSEQARANSPTRRELQVWGRDNNSLSEAGVDRQGTVSSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQISIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKESWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARVRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGASNRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLINKEKVYLAWVPAHKGIGGNEQVDKLVSTGIRKVLFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAREIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKVKIIRDYGKQMAGDDCVASRQDED,FFRENLAFPQGEARKFPSEQARANSPTRRELQVWGRDNNSLSEAGVDRQGTVSSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQISIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKESWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARVRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGASNRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLINKEKVYLAWVPAHKGIGGNEQVDKLVSTGIRKVLFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAREIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKVKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGGAGGCCAGGAAATTTCCTTCAGAGCAGGCCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAACAACTCCCTCTCAGAAGCAGGAGTCGACAGGCAAGGAACTGTATCCTCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTACCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATTAAAGTAAGACAGTATGATCAGATATCCATAGAAATCTGTGGACATAAAGCTATAGGGACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAAATTGGTTGTACTTTAAATTTCCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAACAGAAATTTGTACAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGACAGCACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAAAGAACTCAAGATTTCTGGGAAGTTCAATTAGGGATACCACATCCAGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATGAGGATTTCAGGAAGTATACTGCATTTACCATACCTAGTATAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAATGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGACATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAATTGAGACAACATCTGTTGAGGTGGGGATTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAGAAAAAGAAAGCTGGACTGTCAATGACATACAAAAGTTAGTGGGTAAATTGAATTGGGCAAGTCAGATTTATGCAGGGATCAAAGTAAAACAATTATGTAAACTTCTTAGGGGAGCCAAAGCACTAACAGAAGTAATACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAGATTTTAAAAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAGCAGGGGCAAGGCCAATGGACATATCAGATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAGTGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAGCCACTGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAGGTTACCCATACAAAAAGAAACATGGGAAACATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCATCTAATAGAGAGACTAAATTAGGAAAAGCAGGATATGTTACTGACAGAGGAAGACAGAAAGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAGTTACAAGCAATTCATCTAGCTTTGCAGGATTCAGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATAAAAGTGAATCAGAGTTAGTCAATCAAATAATAGAACAGTTAATAAACAAGGAAAAGGTCTACTTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTTAGTACTGGAATTAGAAAAGTACTATTTTTAGATGGAATAGATAAGGCCCAAGAAGAACATGAGAAATACCACAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTGGTAGCAAGAGAAATAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGAGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAGCTAGATTGTACACATTTAGAAGGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAAACAGGACAGGAAACAGCATACTTTCTCTTAAAATTAGCAGGAAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGTAATTTCACTAGTACTACAGTTAAGGCCGCCTGTTGGTGGGCGGGGATCAAGCAGGAGTTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGACCAGGCTGAACATCTTAAAACAGCAGTACAAATGGCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTGATACAAGACAATAGTGACATAAAAGTAGTGCCAAGAAGAAAAGTAAAAATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG +MN692145,vif,5029,5608,5040,5619,forward,0.2608047690014903,MENRWQVMIVWQVDRMRIRTWKSLVKHHMYVSGKAKGWFYRHHYESHHPRISSEVHVPLGDARLVITTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPNLADQLIHLYYFDCFSESAIRSAILGHIVSPSCEYQAGHNKVGSLQYLALAALITPKRRKPPLPSVAKLTEDRWNKPQKTKGHRGSHIRNGH,MENRWQVMIVWQVDRMRIRTWKSLVKHHMYVSGKAKGWFYRHHYESHHPRISSEVHVPLGDARLVITTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPNLADQLIHLYYFDCFSESAIRSAILGHIVSPSCEYQAGHNKVGSLQYLALAALITPKRRKPPLPSVAKLTEDRWNKPQKTKGHRGSHIRNGH*,ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAAAAGTTTAGTAAAACACCATATGTATGTTTCAGGGAAAGCTAAGGGATGGTTTTATAGACATCACTATGAAAGCCATCATCCAAGAATAAGTTCAGAAGTACATGTCCCACTAGGGGATGCTAGATTGGTAATAACAACATATTGGGGTCTGCATACAGGAGAAAGAGATTGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGGAAAAGGAGATATAGCACACAAGTAGACCCCAACCTAGCAGACCAACTGATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAGTGCCATATTAGGACATATAGTTAGTCCTAGTTGTGAATATCAAGCAGGACATAACAAGGTAGGATCTCTACAGTACTTGGCATTAGCAGCATTAATAACACCAAAAAGGAGAAAGCCCCCTTTGCCTAGTGTTGCAAAGCTGACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCACCGAGGGAGCCATATCAGGAATGGACACTAG +MN692145,vpr,5547,5841,5558,5850,forward,0.4170684667309551,MEQAPEDQGPPREPYQEWTLELLEELKNEAVRHFPRMWLHGLGQHIYDTYGDTWTGVEAIIRILQQLLFIHFRIGCQHSRIGIIRQRRTRNGANRS,MEQAPEDQGPPREPYQEWTLELLEELKNEAVRHFPRMWLHGLGQHIYDTYGDTWTGVEAIIRILQQLLFIHFRIGCQHSRIGIIRQRRTRNGANRS*T,ATGGAACAAGCCCCAGAAGACCAAGGGCCACCGAGGGAGCCATATCAGGAATGGACACTAGAGCTTTTAGAGGAGCTTAAGAATGAAGCTGTTAGACATTTTCCTAGGATGTGGCTCCATGGCTTAGGGCAACATATCTATGACACTTATGGGGATACTTGGACAGGAGTGGAAGCCATAATAAGAATTCTGCAACAACTGCTGTTCATTCATTTCAGGATTGGGTGTCAACATAGCAGAATAGGCATTATTCGCCAGAGGAGAACAAGAAATGGAGCCAATAGATCCTAGACT +MN692145,tat_exon1,5818,6037,5830,6045,forward,0.31992687385740404,MEPIDPRLEPWKHPGSQPKTACTSCYCKKCCFHCQVCFMTKALGISYGRKKRRQRRRASQDSQTHQVSLSKQ,MEPIDPRLEPWKHPGSQPKTACTSCYCKKCCFHCQVCFMTKALGISYGRKKRRQRRRASQDSQTHQVSLSKQ*,ATGGAGCCAATAGATCCTAGACTAGAGCCCTGGAAGCATCCAGGAAGCCAGCCTAAGACTGCTTGTACCTCTTGCTATTGTAAAAAGTGTTGCTTTCATTGTCAAGTCTGTTTCATGACAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTTCTCAAGACAGTCAGACTCATCAAGTTTCTCTATCAAAGCAGTAA +MN692145,rev_exon1,5957,6038,5969,6045,forward,0.4557731262660365,MAGRSGDSDEELLKTVRLIKFLYQSSK,MAGRSGDSDEELLKTVRLIKFLYQSSK,ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTTCTCAAGACAGTCAGACTCATCAAGTTTCTCTATCAAAGCAGTAAG +MN692145,vpu,6049,6298,6061,6310,forward,0.48354327509142636,MNSLQISAIVAIVVAIILAIVVWSIVFIEYRKILRQRKIDRLIDRIRERAEDSGNESEGDQEELSTALMEMGHHAPWDVDDL,MNSLQISAIVAIVVAIILAIVVWSIVFIEYRKILRQRKIDRLIDRIRERAEDSGNESEGDQEELSTALMEMGHHAPWDVDDL*,ATGAACTCTTTACAAATATCAGCAATAGTAGCAATAGTAGTAGCAATAATACTAGCAATAGTTGTGTGGTCTATAGTATTCATAGAATATAGGAAAATATTAAGACAAAGAAAAATAGATAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGGGATCAGGAAGAACTATCAACAGCACTTATGGAGATGGGGCACCATGCTCCTTGGGATGTTGATGATCTGTAG +MN692145,env,6212,8783,6224,8795,forward,0.4452133553553136,MRVKGIRKNYQQHLWRWGTMLLGMLMICSAAGNLWVTVYYGVPVWKEATTTLFCASDAKAYGTEVHNVWATHACVPTDPNPQEVRLENVTENFNMWRNPMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDLGQESTNNNITGSIEKGEMKNCSFNISSSKGSKGHKEYASFYKLDVVPIGNNKTNGNYSSYRLISCNTSVITQACPKVSFEPIPIHFCAPAGYAILKCNDKQFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSANFTDNAKTIIVQLNQSVEITCTRPGNNTIRGVHMGPGKAFYAGAITGDIRKAHCIINKAKWNSTLRLVVAKLSEQFRNKTINFTQPSGGDPEIVTHSFNCGGEFFYCNTTKLFNSTWNATHMINGTWNDTEGNITLPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGGKTNESNTTEIFRPGGGDMRDNWRSELYKYKVVRIEPLGVAPTKAKRRVVQREKRAVGIGALFLGFLGAAGSTMGATSMALTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGVKQLQARVLALERYLKDQQLLGFWGCSGKLICTTDVPWNASWSNKSLGQIWENMTWMEWEREIDNYTSLIYTLITESQIQQEQNEKELLELDKWANLWNWFGITNWLWYIKIFIMIVGGLVGLRIVFAVLSIVNRVRQGYSPLSFQTRFPAPRGPDRPEGIEEEGGERDRDRSAPLVKGFLALIWVDLRSLCLFSYHRLRDLLLIITRIVELLGRRGWEVLKYLWSLLQYWTQELKNSAVSLLNATAIAVAEGTDRIIEVLQRVFRAILHIPTRIRQGFERALL,MRVKGIRKNYQQHLWRWGTMLLGMLMICSAAGNLWVTVYYGVPVWKEATTTLFCASDAKAYGTEVHNVWATHACVPTDPNPQEVRLENVTENFNMWRNPMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDLGQESTNNNITGSIEKGEMKNCSFNISSSKGSKGHKEYASFYKLDVVPIGNNKTNGNYSSYRLISCNTSVITQACPKVSFEPIPIHFCAPAGYAILKCNDKQFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSANFTDNAKTIIVQLNQSVEITCTRPGNNTIRGVHMGPGKAFYAGAITGDIRKAHCIINKAKWNSTLRLVVAKLSEQFRNKTINFTQPSGGDPEIVTHSFNCGGEFFYCNTTKLFNSTWNATHMINGTWNDTEGNITLPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGGKTNESNTTEIFRPGGGDMRDNWRSELYKYKVVRIEPLGVAPTKAKRRVVQREKRAVGIGALFLGFLGAAGSTMGATSMALTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGVKQLQARVLALERYLKDQQLLGFWGCSGKLICTTDVPWNASWSNKSLGQIWENMTWMEWEREIDNYTSLIYTLITESQIQQEQNEKELLELDKWANLWNWFGITNWLWYIKIFIMIVGGLVGLRIVFAVLSIVNRVRQGYSPLSFQTRFPAPRGPDRPEGIEEEGGERDRDRSAPLVKGFLALIWVDLRSLCLFSYHRLRDLLLIITRIVELLGRRGWEVLKYLWSLLQYWTQELKNSAVSLLNATAIAVAEGTDRIIEVLQRVFRAILHIPTRIRQGFERALL*,ATGAGAGTGAAGGGGATCAGGAAGAACTATCAACAGCACTTATGGAGATGGGGCACCATGCTCCTTGGGATGTTGATGATCTGTAGTGCTGCAGGCAATTTGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAAAGAAGCAACCACCACTCTATTTTGTGCATCAGATGCTAAAGCATATGGTACAGAGGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTGAGATTGGAAAATGTGACAGAAAATTTTAATATGTGGAGAAATCCAATGGTAGAACAGATGCATGAGGATATAATTAGTTTATGGGATCAAAGCCTAAAGCCATGTGTAAAGTTGACCCCACTCTGTGTCACTTTAAATTGCACTGATTTGGGACAGGAGAGTACCAATAATAATATCACAGGAAGTATAGAGAAAGGAGAAATGAAAAACTGCTCTTTCAATATCTCCTCAAGCAAAGGAAGTAAGGGGCATAAAGAATATGCATCTTTTTATAAACTTGATGTAGTACCAATAGGTAATAATAAGACTAATGGTAATTATTCTAGCTATAGGTTGATAAGTTGTAATACCTCAGTCATTACACAGGCCTGTCCAAAAGTATCATTTGAGCCAATTCCCATACATTTTTGTGCCCCGGCTGGGTATGCGATTCTAAAGTGTAATGATAAACAATTCAATGGAACAGGACCATGTACAAATGTCAGCACAGTACAGTGTACACATGGAATTAGGCCAGTAGTATCAACTCAACTGCTGTTAAATGGTAGTCTAGCAGAAGAAGAGGTAGTAATTAGATCTGCCAATTTCACGGACAATGCTAAAACCATAATAGTACAGCTGAACCAATCTGTAGAAATTACTTGTACAAGACCCGGTAACAATACAATAAGAGGGGTTCACATGGGACCAGGGAAGGCATTTTATGCAGGAGCAATAACAGGAGATATAAGAAAAGCACATTGTATCATTAATAAAGCAAAATGGAACAGTACTTTAAGACTGGTAGTTGCAAAATTAAGTGAGCAATTTAGGAATAAAACAATAAACTTTACTCAACCCTCAGGAGGGGACCCAGAAATTGTAACACACAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAATACAACAAAACTGTTTAATAGTACTTGGAATGCAACACACATGATTAATGGTACTTGGAATGATACTGAGGGAAATATCACCCTCCCATGCAGAATAAAACAAATTATAAACATGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCATCAGAGGACAAATTAGATGTTCATCCAATATTACAGGGTTGCTATTAACAAGAGATGGTGGTAAGACTAACGAGAGCAACACCACCGAGATCTTTAGACCTGGAGGAGGAGATATGAGAGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAGAATTGAACCATTAGGGGTAGCACCCACCAAGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTCTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAACGTCGATGGCGTTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAACAGCAGAACAATTTGCTGAGAGCTATTGAGGCGCAACAACATTTGTTGCAACTCACAGTCTGGGGCGTCAAGCAGCTCCAGGCAAGAGTCCTGGCTCTGGAAAGATACCTAAAGGATCAACAGCTCCTGGGGTTTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGATGTGCCTTGGAATGCTAGTTGGAGTAATAAATCTCTGGGACAAATTTGGGAGAACATGACCTGGATGGAGTGGGAAAGAGAAATTGATAATTACACAAGCTTAATATACACTTTAATTACAGAATCGCAGATCCAACAAGAACAGAATGAAAAAGAATTGTTGGAATTGGATAAATGGGCAAATTTGTGGAATTGGTTTGGCATAACAAACTGGCTGTGGTACATAAAAATATTTATAATGATAGTAGGAGGCTTAGTAGGTTTAAGAATAGTTTTTGCTGTACTTTCTATAGTGAATAGAGTTAGGCAGGGATACTCACCATTATCGTTTCAGACCCGCTTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGCTCCATTAGTGAAAGGATTCTTAGCACTTATCTGGGTCGATCTACGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATAATAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGTCCTCAAATACTTGTGGAGTCTCCTACAGTATTGGACACAGGAACTAAAGAATAGTGCTGTTAGCTTGCTCAATGCCACAGCCATAGCAGTAGCTGAGGGGACAGATAGGATTATAGAAGTATTACAAAGAGTTTTTAGAGCTATCCTCCATATCCCTACAAGAATAAGACAGGGCTTTGAAAGGGCTTTGCTATAA +MN692145,tat_exon2,8364,8460,8376,8469,forward,0.439759036144578,RPASQPRGDPTGPKESKKKVERETETDPLH,RPASQPRGDPTGPKESKKKVERETETDPLH**,AGACCCGCTTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGCTCCATTAGTGA +MN692145,rev_exon2,8365,8641,8377,8653,forward,0.29843322556577967,DPLPSPEGTRQARRNRRRRWRERQRQIRSISERILSTYLGRSTEPVPLQLPPLERLTLDNNEDCGTSGTQGVGSPQILVESPTVLDTGTKE,DPLPSPEGTRQARRNRRRRWRERQRQIRSISERILSTYLGRSTEPVPLQLPPLERLTLDNNEDCGTSGTQGVGSPQILVESPTVLDTGTKE*,GACCCGCTTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGCTCCATTAGTGAAAGGATTCTTAGCACTTATCTGGGTCGATCTACGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATAATAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGTCCTCAAATACTTGTGGAGTCTCCTACAGTATTGGACACAGGAACTAAAGAATAG +MN692145,nef,8784,9576,8796,9417,forward,0.38480154888673335,MGGKWSKSSLVGWPNVRERMRRAEPAADGVGAVSRDLERHGAITSSNTATNNADCAWLEAQKEEEVGFPVTPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIHSQKRQDILDLWIYHTQGYFPDWQNYTPGPGVRYPLTFGWCFKLVPVEPTDRENDRLLHPASLQGMEDPEGEVLEWRFDSRLAFHHMARELHPEYYKNC,MGGKWSKSSLVGWPNVRERMRRAEPAADGVGAVSRDLERHGAITSSNTATNNADCAWLEAQKEEEVGFPVTPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIHSQKRQDILDLWIYHTQGYFPDWQNYTPGPGVRYPLTFGWCFKLVPVEPTDRENDRLLHPASLQGMEDPEGEVLEWRFDSRLAFHHMARELHPEYYKNC*HRAFYKGLSAGDFPGEAWPGRGRGVASPQMLHISSCFCLYWVSLVRPDLSLGALWLTREPTA*,ATGGGGGGCAAGTGGTCAAAAAGTAGTTTGGTTGGATGGCCTAATGTAAGGGAAAGAATGAGACGAGCTGAGCCAGCAGCAGATGGGGTGGGAGCAGTATCTCGAGACTTGGAAAGACATGGAGCAATCACAAGTAGTAATACAGCAACTAACAATGCTGATTGTGCCTGGCTAGAAGCACAAAAGGAGGAGGAGGTGGGTTTTCCAGTCACACCTCAGGTACCTTTAAGACCAATGACTTACAAGGCAGCTGTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCACTCCCAAAAAAGACAAGATATTCTTGATCTATGGATCTACCACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGGTCAGATATCCACTGACCTTTGGATGGTGCTTCAAGCTAGTACCAGTTGAGCCCACTGACAGAGAGAATGACAGATTGCTGCACCCTGCAAGCCTGCAGGGGATGGAAGACCCGGAGGGAGAAGTGTTAGAGTGGAGGTTTGACAGCCGCCTGGCATTTCATCACATGGCCCGAGAGCTGCATCCGGAGTACTACAAGAACTGCTGACATCGAGCTTTCTACAAGGGACTTTCCGCTGGGGACTTTCCAGGGGAGGCGTGGCCTGGGCGGGGCAGGGGAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTCTGCCTGTACTGGGTCTCTCTGGTTAGACCAGATCTGAGCCTGGGAGCTCTCTGGCTGACTAGGGAACCCACTGCTTAA +MN090335,gag,315,1665,789,2292,forward,0.5897300158814187,MAYSPVAAPRLLPCALQQATPQDLNTMLNTVGGHQAAMQMLKEVINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQATGTANILMQRGNFRNQRKPVKCFNCGKEGHIAKNCRAPRKKGCWKCGREGHQMKDCTERQANFLGKIWPSHKGRPGNFPQSRPEIPQSRPEPTAPPAPPEESFRFGEATTPSQKQETMDKELYPPLTSLRSLFGNDPSSQ,MYTIEGGYCII**SKFF*SCLKGWL*LFQYLFTAS*CF*QARINCESF*FPACPYYMF*SIFFLSPWP*PNFLPSI*FSPAQY*RSRTHLSPSSLR*SKMAYSPVAAPRLLPCALQQATPQDLNTMLNTVGGHQAAMQMLKEVINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQATGTANILMQRGNFRNQRKPVKCFNCGKEGHIAKNCRAPRKKGCWKCGREGHQMKDCTERQANFLGKIWPSHKGRPGNFPQSRPEIPQSRPEPTAPPAPPEESFRFGEATTPSQKQETMDKELYPPLTSLRSLFGNDPSSQ*,ATGTACACAATAGAGGGTGGCTACTGTATTATATAATGATCTAAGTTCTTCTGATCCTGTCTGAAGGGATGGTTGTAGCTGTTCCAATATCTGTTTACAGCCTCCTGATGTTTCTAACAGGCCAGGATTAACTGCGAATCGTTCTAGTTCCCTGCTTGCCCATACTATATGTTTTAATCTATATTTTTTCTTTCCCCCTGGCCTTAACCGAATTTTCTCCCATCTATCTAATTCTCCCCCGCTCAATACTGACGCTCTCGCACCCATCTCTCTCCTTCTAGCCTCCGCTAGTCAAAAATGGCGTACTCACCAGTCGCCGCCCCTCGCCTCTTGCCGTGCGCGCTTCAGCAAGCCACCCCACAAGATTTGAACACTATGCTAAACACAGTGGGTGGACACCAAGCAGCTATGCAAATGTTAAAAGAGGTCATCAATGAGGAAGCTGCAGAATGGGATAGATTACATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGGATGGATGACACATAATCCACCTATCCCAGTAGGAGAGATTTATAAAAGATGGATAATTCTGGGACTAAATAAAATAGTAAGAATGTATAGCCCTACCAGCATTTTGGACATAAAGCAAGGGCCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAAAACTTTAAGAGCCGAGCAAGCTACACAGGAAGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAGAATGCAAATCCAGATTGTAAAACTATTTTAAAAGCATTAGGACCAGCAGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGGGGACCCGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGCAACAGGTACAGCCAACATACTGATGCAGAGAGGCAATTTTAGGAACCAAAGAAAGCCTGTTAAATGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAGGGAAGGACACCAAATGAAGGATTGCACTGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCTCACAAGGGAAGGCCAGGGAACTTTCCTCAGAGCCGACCAGAAATTCCTCAGAGCAGACCAGAGCCAACAGCCCCACCAGCCCCTCCAGAAGAGAGCTTCAGGTTTGGGGAAGCAACAACTCCCTCTCAGAAGCAGGAGACAATGGACAAGGAGCTGTATCCTCCTCTAACTTCCCTCAGATCACTCTTTGGCAACGACCCATCGTCACAATAA +MN090335,pol,1427,4469,2084,5096,forward,0.259214256784123,FFRENLAFSQGKARELSSEPTRNSSEQTRANSPTSPSRRELQVWGSNNSLSEAGDNGQGAVSSSNFPQITLWQRPIVTIKIGGQLKEALLDTGADDTVLEDIDLPGKWKPKMIGGIGGFIKVRQYEQVPIEISGHKAIGTVLVGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDGTKWRKLVDFRELNKRTQEFWEIQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKTNPDIVIYQYMDDLYVGSDLEIGQHRTKVEELRQHLMRWGFTTPDKKHQKEPPFLWMGYELHPNKWTVQPIVLPEKESWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGTKALTEVVPLTEEAELELAENREILKDPVHGAYYDPAKDLIAELQKQGEGQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKISTESIVIWGRTPKFRLPIQKETWETWWTDYWQATWIPEWEFVNTPPLVKLWYQLEKEPIIGAETFYVDGAANRDNKSGKAGYVTDRGRQKVVTINDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIEKAQEDHEKYHSNWRTMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEEKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGRNFTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATEIQTKELQKQITKIPNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED,FFRENLAFSQGKARELSSEPTRNSSEQTRANSPTSPSRRELQVWGSNNSLSEAGDNGQGAVSSSNFPQITLWQRPIVTIKIGGQLKEALLDTGADDTVLEDIDLPGKWKPKMIGGIGGFIKVRQYEQVPIEISGHKAIGTVLVGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDGTKWRKLVDFRELNKRTQEFWEIQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKTNPDIVIYQYMDDLYVGSDLEIGQHRTKVEELRQHLMRWGFTTPDKKHQKEPPFLWMGYELHPNKWTVQPIVLPEKESWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGTKALTEVVPLTEEAELELAENREILKDPVHGAYYDPAKDLIAELQKQGEGQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKISTESIVIWGRTPKFRLPIQKETWETWWTDYWQATWIPEWEFVNTPPLVKLWYQLEKEPIIGAETFYVDGAANRDNKSGKAGYVTDRGRQKVVTINDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIEKAQEDHEKYHSNWRTMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEEKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGRNFTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATEIQTKELQKQITKIPNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*,TTTTTTAGGGAAAATCTGGCCTTCTCACAAGGGAAGGCCAGGGAACTTTCCTCAGAGCCGACCAGAAATTCCTCAGAGCAGACCAGAGCCAACAGCCCCACCAGCCCCTCCAGAAGAGAGCTTCAGGTTTGGGGAAGCAACAACTCCCTCTCAGAAGCAGGAGACAATGGACAAGGAGCTGTATCCTCCTCTAACTTCCCTCAGATCACTCTTTGGCAACGACCCATCGTCACAATAAAGATAGGGGGGCAACTAAAGGAAGCTTTATTAGATACAGGAGCAGATGATACAGTATTAGAGGACATAGATTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAATATGAACAGGTACCCATAGAAATTAGCGGACACAAAGCTATAGGTACAGTGTTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGCTTGGTTGCACTCTAAATTTTCCCATCAGCCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGACGGCCCAAAGGTTAAACAATGGCCATTAACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTGTTTGCCATAAAGAAAAAAGATGGCACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGAATTCTGGGAAATTCAATTAGGTATACCACATCCTGCAGGGCTAAAAAAGAAAAAATCAGTCACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATAAAGACTTCAGGAAATATACTGCATTTACCATACCTAGTATAAACAATGAGACACCAGGGATTAGATATCAGTATAATGTGCTTCCACAAGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAGATCCTGGAGCCTTTTAGAAAGACAAATCCAGACATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAACATAGAACAAAAGTAGAGGAACTGAGGCAACATCTGATGAGGTGGGGATTTACCACACCAGACAAAAAGCACCAGAAAGAACCCCCATTCCTTTGGATGGGGTATGAACTCCATCCTAATAAATGGACAGTACAGCCTATAGTACTGCCAGAAAAGGAAAGTTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTATGCAGGGATTAAAGTGAAGCAATTATGTAAGCTCCTTAGGGGAACCAAAGCATTAACAGAAGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAGATTCTAAAAGATCCGGTACATGGAGCATATTATGACCCAGCAAAGGACTTAATAGCAGAACTACAGAAGCAGGGAGAAGGTCAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGGAAATATGCAAGAACGAGGGGTGCCCATACTAATGATGTAAAGCAATTAACAGAGGCAGTGCAAAAAATATCCACAGAAAGTATAGTAATATGGGGAAGGACTCCTAAATTTAGATTACCCATACAAAAAGAAACATGGGAAACATGGTGGACAGATTATTGGCAAGCCACCTGGATCCCTGAGTGGGAGTTTGTCAACACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAAAAAGAACCCATAATAGGAGCAGAAACCTTCTATGTAGATGGGGCAGCTAATAGGGATAATAAATCAGGAAAAGCAGGATATGTTACTGATAGAGGAAGACAAAAGGTTGTCACCATAAATGACACAACAAATCAGAAAACTGAATTACAAGCCATTCATCTAGCCTTGCAGGATTCGGGGCTAGAAGTAAACATAGTAACAGACTCACAGTATGCATTAGGGATCATTCAAGCACAACCAGATAAAAGTGAATCAGAGTTAGTCAGTCAAATAATAGAACAGTTAATAAAAAAGGAAAAGGTCTACCTGGCATGGGTGCCAGCCCACAAAGGAATTGGAGGAAATGAACAGGTAGATAAACTAGTCAGTGCTGGAATCAGGAAAGTACTATTTTTAGATGGAATAGAAAAAGCCCAAGAAGACCATGAGAAATATCACAGTAATTGGAGAACAATGGCTAGTGATTTTAACCTACCACCTATAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGAGAAGCTATGCATGGGCAAGTAGACTGTAGTCCAGGTATATGGCAGCTAGATTGTACACATTTAGAAGAAAAAATTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTGATTCCAGCAGAGACAGGGCAAGAAACAGCATACTTTATTTTAAAACTAGCAGGAAGATGGCCAGTAAAAACAATACATACAGACAATGGCCGCAATTTCACCAGTAATACAGTGAAGGCCGCCTGTTGGTGGGCGGGAATCAAGCAGGAATTTGGTATTCCCTACAATCCCCAGAGTCAAGGAGTAGTAGAATCTATGAATAATGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGATACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACAGAAATACAGACTAAAGAATTACAAAAACAAATTACAAAAATTCCAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAACAGTGACATAAAAGTAGTGCCAAGAAGAAAAGCAAAAATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG +MN090335,vif,4413,5001,5040,5619,forward,0.3566796368352788,MENRWQVMIVWQVDRMRIRTWKSLVKYHMYISKKAKKWAYRHHYETTHPRISSEVHIPLGDDRLVITTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPDLADHLIHVHYFDCFSESAIRNAILGHRVSPRCEYQAGHNKVGSLQYLALTAVITPKKIKPPLPSVKKLTEDRWNKPQKTKGHRESHTMNGH,MENRWQVMIVWQVDRMRIRTWKSLVKYHMYISKKAKKWAYRHHYETTHPRISSEVHIPLGDDRLVITTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPDLADHLIHVHYFDCFSESAIRNAILGHRVSPRCEYQAGHNKVGSLQYLALTAVITPKKIKPPLPSVKKLTEDRWNKPQKTKGHRESHTMNGH*SF*,ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAAAAGTTTAGTAAAATACCATATGTATATTTCAAAGAAAGCCAAAAAATGGGCTTATAGACACCATTACGAAACCACTCATCCAAGAATAAGTTCAGAAGTACATATCCCACTAGGGGATGATAGATTGGTAATAACAACATATTGGGGTCTGCATACAGGAGAGAGAGACTGGCATTTGGGCCAGGGAGTCTCCATAGAATGGAGAAAAAGGAGATATAGCACACAAGTAGACCCTGACTTAGCAGACCATCTAATTCATGTGCATTATTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACATAGAGTTAGCCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGATCTCTACAATACTTGGCACTAACAGCAGTAATAACACCAAAGAAGATAAAGCCACCTTTGCCTAGTGTAAAGAAACTGACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGAGAGCCATACAATGAATGGACACTAGAGCTTTTAG +MN090335,vpr,4931,5225,5558,5850,forward,0.4557731262660367,MEQAPEDQGPQREPYNEWTLELLEELKREAVRHFPRPWLQDLGQYIYETYGDTWTGVEAIIRILQQMLFIHFRIGCHHSRIGIVLQRRARNGASRS,MEQAPEDQGPQREPYNEWTLELLEELKREAVRHFPRPWLQDLGQYIYETYGDTWTGVEAIIRILQQMLFIHFRIGCHHSRIGIVLQRRARNGASRS*T,ATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGAGAGCCATACAATGAATGGACACTAGAGCTTTTAGAAGAGCTTAAGAGAGAAGCTGTTAGACATTTCCCTAGACCATGGCTACAAGACCTAGGACAATATATCTATGAAACTTATGGGGATACTTGGACAGGAGTGGAAGCCATAATAAGAATTCTGCAACAAATGCTGTTTATTCATTTCAGAATTGGGTGTCACCATAGCAGAATAGGCATTGTTCTGCAAAGAAGAGCAAGAAATGGAGCCAGTAGATCATAGACT +MN090335,tat_exon1,5202,5418,5830,6045,forward,0.42503863987635226,MEPVDHRLEPWKHPGSQPRTPCTNCYCKKCCFHCQVCFIQKALGISYGRKKRRQRRRSPQDSQTHQVPLPKQ,MEPVDHRLEPWKHPGSQPRTPCTNCYCKKCCFHCQVCFIQKALGISYGRKKRRQRRRSPQDSQTHQVPLPKQ,ATGGAGCCAGTAGATCATAGACTAGAGCCCTGGAAGCATCCAGGAAGTCAGCCTAGGACTCCTTGTACCAATTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTGTGTTTTATACAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGAGACGAAGATCTCCTCAAGACAGTCAGACTCATCAAGTTCCTCTACCAAAGCAG +MN090335,rev_exon1,5341,5419,5969,6045,forward,0.5275498241500586,MAGRSGDRDEDLLKTVRLIKFLYQSS,MAGRSGDRDEDLLKTVRLIKFLYQSS,ATGGCAGGAAGAAGCGGAGACAGAGACGAAGATCTCCTCAAGACAGTCAGACTCATCAAGTTCCTCTACCAAAGCAGT +MN090335,vpu,5433,5682,6061,6310,forward,0.5141437308868502,MQSLEILAIVALVVAAIIAIVVWTIVGIEYRKILRQRKIDKIINRIRERAEDSGNESEGDQEELSALVVEMGHDAPWDVDDL,MQSLEILAIVALVVAAIIAIVVWTIVGIEYRKILRQRKIDKIINRIRERAEDSGNESEGDQEELSALVVEMGHDAPWDVDDL*,ATGCAATCTTTAGAGATATTAGCAATAGTAGCATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGACCATAGTAGGCATAGAATATAGGAAAATATTAAGACAAAGAAAAATAGATAAAATAATTAATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGCGAAGGGGATCAGGAAGAATTGTCAGCACTTGTGGTGGAAATGGGGCACGATGCTCCTTGGGATGTTGATGATCTGTAG +MN090335,env,5596,8158,6224,8795,forward,0.49272619525530026,MRAKGIRKNCQHLWWKWGTMLLGMLMICSAAENLWVTVYYGVPVWRDANTTLFCASDAKAYDTEVHNVWATHACVPTDPNPHEVELKNVTENFNMWKNNMVDQMHEDIINLWDQSLKPCAKLTPLCVTLNCTDLRNDTVGNQTNLTETNTIQGREMTNCSFNITTEIRDKVRKEHALFYKLDVMPIDRDNTSYTLINCNTSVITQACPKVTFEPIPIHYCTPAGFAILKCKDEMFNGTGPCKNVSTVQCTHGIRPVVSTQLLLNGSLAEKEIVLRSENFTDNGKNIIVQLNRSIVINCTRPNNNTRKSISVAGRAIYATGQIIGDIRQAHCNISETDWNDTLSKIVEKLREKFGKDKTIIFNQSSGGDMEIETHSFNCGGEFFYCNTTRLFNSTWSVNGTSINGTKNITLPCRIKQIINRWQEVGKAMYAPPISGIIRCSSNITGLILTRDGGTNNSTEETETFRPGGGNMKDNWRSELYKYKVVKIEPLGVAPTKAQRRVVQREKRAIGALGAMFLGFLGAAGSTMGAASLTLTVQARQLLSGIVQQQNNLLRAIEAQQHMLQLTVWGIKQLQARVLSVERYLQDQQLLGIWGCSGKLICTTTVPWNTSWSNKSYDTIWDNMTWMQWDREIQNYTGKIYNLLEESQIQQEKNEKELLELDQWANLWNWFSITKWLWYIKIFIMIVGGLVGLKIIFAVFSIVNRVRQGYSPLSLQTLLPTPRGPDRPEGIEEEGGERDRGRSGRLVTGFLPLIWDDLRSLCLFSYHHLRDLLLIVLRTVQVLGHRGWEILKYWWSLLQYWIQELKNSAVSLLNTIAIAVAEGTDRVIEVGQRIGRAFLHIPRRIRQGLERALQ,MRAKGIRKNCQHLWWKWGTMLLGMLMICSAAENLWVTVYYGVPVWRDANTTLFCASDAKAYDTEVHNVWATHACVPTDPNPHEVELKNVTENFNMWKNNMVDQMHEDIINLWDQSLKPCAKLTPLCVTLNCTDLRNDTVGNQTNLTETNTIQGREMTNCSFNITTEIRDKVRKEHALFYKLDVMPIDRDNTSYTLINCNTSVITQACPKVTFEPIPIHYCTPAGFAILKCKDEMFNGTGPCKNVSTVQCTHGIRPVVSTQLLLNGSLAEKEIVLRSENFTDNGKNIIVQLNRSIVINCTRPNNNTRKSISVAGRAIYATGQIIGDIRQAHCNISETDWNDTLSKIVEKLREKFGKDKTIIFNQSSGGDMEIETHSFNCGGEFFYCNTTRLFNSTWSVNGTSINGTKNITLPCRIKQIINRWQEVGKAMYAPPISGIIRCSSNITGLILTRDGGTNNSTEETETFRPGGGNMKDNWRSELYKYKVVKIEPLGVAPTKAQRRVVQREKRAIGALGAMFLGFLGAAGSTMGAASLTLTVQARQLLSGIVQQQNNLLRAIEAQQHMLQLTVWGIKQLQARVLSVERYLQDQQLLGIWGCSGKLICTTTVPWNTSWSNKSYDTIWDNMTWMQWDREIQNYTGKIYNLLEESQIQQEKNEKELLELDQWANLWNWFSITKWLWYIKIFIMIVGGLVGLKIIFAVFSIVNRVRQGYSPLSLQTLLPTPRGPDRPEGIEEEGGERDRGRSGRLVTGFLPLIWDDLRSLCLFSYHHLRDLLLIVLRTVQVLGHRGWEILKYWWSLLQYWIQELKNSAVSLLNTIAIAVAEGTDRVIEVGQRIGRAFLHIPRRIRQGLERALQ*,ATGAGAGCGAAGGGGATCAGGAAGAATTGTCAGCACTTGTGGTGGAAATGGGGCACGATGCTCCTTGGGATGTTGATGATCTGTAGTGCTGCGGAAAATTTGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAGAGATGCAAATACCACTCTATTCTGTGCATCAGATGCTAAAGCATATGATACAGAAGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCTAACCCACATGAAGTAGAATTGAAAAATGTGACAGAAAATTTTAATATGTGGAAAAATAACATGGTGGACCAGATGCATGAGGATATAATCAATTTATGGGATCAAAGCCTAAAGCCATGTGCAAAATTGACCCCACTCTGTGTTACTTTAAATTGCACTGATTTAAGAAATGATACTGTAGGAAATCAAACAAATCTCACTGAAACTAATACAATACAGGGAAGAGAAATGACAAACTGCTCTTTCAATATCACCACAGAGATAAGAGATAAAGTGCGAAAAGAACATGCACTTTTTTATAAACTTGATGTCATGCCAATAGATAGGGATAATACAAGTTATACATTGATAAATTGCAATACCTCAGTCATTACACAGGCCTGTCCAAAGGTAACCTTTGAACCAATTCCCATACATTATTGTACTCCAGCTGGTTTTGCAATTCTAAAGTGTAAGGATGAGATGTTCAATGGAACAGGACCATGTAAGAATGTCAGCACAGTACAATGTACACATGGAATTAGACCAGTAGTGTCAACTCAACTACTGTTAAATGGTAGCCTAGCAGAAAAAGAGATAGTACTTAGATCTGAAAATTTCACAGACAATGGTAAAAATATAATAGTACAGCTAAATAGATCTATAGTAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAGTGTAGCAGGGAGAGCAATTTATGCAACAGGGCAGATAATAGGAGATATAAGACAAGCACATTGTAACATCAGTGAGACAGATTGGAATGACACTTTAAGCAAAATAGTTGAAAAATTAAGGGAAAAATTTGGAAAAGATAAAACAATAATCTTTAATCAATCATCAGGAGGGGACATGGAAATTGAAACGCACAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAACACAACACGACTGTTTAATAGTACTTGGAGTGTTAATGGAACTAGCATAAACGGAACTAAAAATATCACACTCCCGTGCAGAATAAAACAAATTATAAACAGGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCTATCAGTGGGATAATTAGGTGCTCATCAAATATTACAGGACTAATATTAACAAGAGATGGTGGTACAAATAATAGTACAGAGGAGACGGAGACCTTCAGACCTGGAGGGGGAAATATGAAGGACAATTGGAGAAGTGAATTATATAAATACAAAGTAGTAAAAATTGAGCCATTAGGAGTAGCACCCACCAAGGCACAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAATAGGAGCGTTAGGAGCTATGTTCCTCGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCACTGACGCTGACGGTACAAGCCAGACAATTATTGTCTGGTATAGTGCAACAGCAGAACAATCTGCTGAGGGCTATTGAGGCGCAACAGCATATGTTGCAACTCACAGTCTGGGGCATCAAACAGCTCCAGGCAAGAGTCCTGTCTGTGGAAAGATACCTACAGGATCAACAGCTCCTGGGGATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTACTGTGCCTTGGAATACTAGTTGGAGCAATAAATCTTACGATACCATCTGGGATAACATGACCTGGATGCAGTGGGACAGAGAAATTCAAAATTACACAGGGAAAATATACAACTTACTTGAGGAATCGCAAATCCAACAGGAAAAGAATGAAAAGGAATTATTAGAACTAGATCAATGGGCAAATTTGTGGAATTGGTTTAGTATAACAAAATGGCTGTGGTATATAAAAATATTCATAATGATAGTAGGAGGCTTAGTAGGTTTAAAAATAATTTTTGCTGTATTTTCTATAGTGAATAGAGTTAGGCAGGGATACTCACCATTATCATTGCAGACCCTCCTCCCAACCCCGAGGGGACCAGACAGGCCCGAAGGAATAGAAGAAGAAGGTGGAGAGAGAGACAGAGGCAGATCCGGAAGATTAGTGACTGGATTCTTACCACTCATCTGGGACGACCTGCGGAGCCTGTGCCTCTTCAGCTACCACCACTTGAGAGACTTACTCTTGATTGTGCTGAGGACTGTGCAAGTTCTGGGACACAGGGGGTGGGAGATCCTCAAGTACTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAACTAAAGAATAGTGCTGTTAGCTTGCTCAATACCATAGCTATCGCAGTAGCTGAGGGAACAGATAGGGTTATAGAGGTAGGACAAAGAATTGGCAGAGCTTTTCTCCACATACCTAGAAGGATAAGACAGGGATTAGAAAGGGCTTTGCAATAA +MN090335,tat_exon2,7739,7835,8376,8469,forward,0.3921568627450981,RPSSQPRGDQTGPKE,RPSSQPRGDQTGPKE*KKKVERETEADPED**,AGACCCTCCTCCCAACCCCGAGGGGACCAGACAGGCCCGAAGGAATAGAAGAAGAAGGTGGAGAGAGAGACAGAGGCAGATCCGGAAGATTAGTGA +MN090335,rev_exon2,7740,8016,8377,8653,forward,0.4267425320056898,DPPPNPEGTRQARRNRRRRWRERQRQIRKISDWILTTHLGRPAEPVPLQLPPLERLTLDCAEDCASSGTQGVGDPQVLVESPAVLDSGTKE,DPPPNPEGTRQARRNRRRRWRERQRQIRKISDWILTTHLGRPAEPVPLQLPPLERLTLDCAEDCASSGTQGVGDPQVLVESPAVLDSGTKE*,GACCCTCCTCCCAACCCCGAGGGGACCAGACAGGCCCGAAGGAATAGAAGAAGAAGGTGGAGAGAGAGACAGAGGCAGATCCGGAAGATTAGTGACTGGATTCTTACCACTCATCTGGGACGACCTGCGGAGCCTGTGCCTCTTCAGCTACCACCACTTGAGAGACTTACTCTTGATTGTGCTGAGGACTGTGCAAGTTCTGGGACACAGGGGGTGGGAGATCCTCAAGTACTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAACTAAAGAATAG +MN090335,nef,8159,8819,8796,9417,forward,0.4589954597048772,MGGKWSKGCMAGWPTVRERMERIDPRPAARREQAEPAAAGVGAASRDLEKYGAITSSNTSTTNAACAWLEAQEEEEVGFPVRPQVPLRPMTYKAALDLSHFLKEKGGLEGLIWSQRRQEILDLWVYHTQGYFPDWQNYTPGPGVRFPLTFGWCFKLVPVDPDQVEKANEGENNCLLHPMSLHGMEDSEGEVLMWKFDSSLAFHHRAREQHPEYYKDC,MGGKWSKGCMAGWPTVRERMERIDPRPAARREQAEPAAAGVGAASRDLEKYGAITSSNTSTTNAACAWLEAQEEEEVGFPVRPQVPLRPMTYKAALDLSHFLKEKGGLEGLIWSQRRQEILDLWVYHTQGYFPDWQNYTPGPGVRFPLTFGWCFKLVPVDPDQVEKANEGENNCLLHPMSLHGMEDSEGEVLMWKFDSSLAFHHRAREQHPEYYKDC*H*,ATGGGTGGCAAGTGGTCAAAAGGTTGTATGGCTGGATGGCCTACTGTAAGGGAAAGAATGGAAAGAATTGATCCAAGGCCTGCTGCAAGGAGGGAACAAGCTGAGCCAGCAGCAGCTGGGGTAGGAGCAGCATCTCGAGACTTGGAAAAATATGGAGCAATCACAAGTAGCAATACATCAACTACTAATGCTGCTTGTGCCTGGCTAGAAGCACAAGAGGAGGAGGAAGTAGGCTTTCCAGTCAGACCTCAGGTACCTTTAAGACCAATGACTTACAAAGCAGCTTTGGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTGGTCCCAGAGAAGACAAGAAATCCTTGATTTGTGGGTTTACCACACACAAGGATACTTCCCTGATTGGCAAAACTACACACCAGGACCAGGGGTCAGATTTCCACTGACCTTTGGATGGTGCTTCAAGCTAGTACCAGTTGATCCAGACCAAGTAGAGAAGGCCAATGAAGGAGAGAACAACTGCTTGCTACACCCTATGAGCCTGCATGGGATGGAAGACTCAGAGGGAGAAGTGTTAATGTGGAAGTTTGACAGCAGCCTGGCGTTTCATCATAGAGCCCGAGAACAACATCCGGAGTACTACAAAGACTGCTGACACTGA diff --git a/tests/expected-results-small/orfs.json b/tests/expected-results-small/orfs.json index ad5aae9..c367d0b 100644 --- a/tests/expected-results-small/orfs.json +++ b/tests/expected-results-small/orfs.json @@ -7,7 +7,7 @@ "subtype_start": 6224, "subtype_end": 8795, "orientation": "forward", - "distance": 1.9898364485981306, + "distance": 0.7624372207948004, "protein": "MGARASVLSGGELDRWEKIRLRPGGNKRYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPTLKTGSEELKSLYNTIAVLYCVHQKIDVKDTKEALDKIEEEQNKIRKQAQQTAAAGSSSQVSHNYPVVQNHQGQMVYQALSPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPSHKARVLAEAMSQMTNSATVMMQKGNFRNQRKTVKCFNCGKEGHIARNCRAPRKKGCWKCGREGHQMKDCTERQANFVGKIWPSHKGRPGNFLQNRPEPTAPPAESFRFGEETPTRCIRSTTRTADTELFTRDFPLGTFQ", "aminoacids": "GLSG*TRSEPGSSLAN*GTHCLSLNKACLECFK*CVPVCCVTLVTRDPSDPFSQCGKSLAVAPEQGPESERETRGALSTQDSAC*ARAARGEGRRLVSTPKIF*LAEARRREMGARASVLSGGELDRWEKIRLRPGGNKRYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPTLKTGSEELKSLYNTIAVLYCVHQKIDVKDTKEALDKIEEEQNKIRKQAQQTAAAGSSSQVSHNYPVVQNHQGQMVYQALSPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPSHKARVLAEAMSQMTNSATVMMQKGNFRNQRKTVKCFNCGKEGHIARNCRAPRKKGCWKCGREGHQMKDCTERQANFVGKIWPSHKGRPGNFLQNRPEPTAPPAESFRFGEETPTRCIRSTTRTADTELFTRDFPLGTFQ*", "nucleotides": "GGTCTCTCTGGTTAGACCAGATCTGAGCCTGGGAGCTCTCTGGCTAACTAGGGAACCCACTGCTTAAGCCTCAATAAAGCTTGCCTTGAGTGCTTCAAGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGGTAACTAGAGATCCCTCAGACCCTTTTAGTCAGTGTGGAAAATCTCTAGCAGTGGCGCCCGAACAGGGACCTGAAAGCGAAAGGGAAACCAGAGGAGCTCTCTCGACGCAGGACTCGGCTTGCTGAGCGCGCGCAGCAAGAGGCGAGGGGCGGCGACTGGTGAGTACGCCGAAAATTTTTTGACTAGCGGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAGAATTGGATAGATGGGAAAAAATTCGGCTAAGGCCAGGAGGAAATAAAAGATATAAACTAAAACATATAGTATGGGCAAGCAGAGAGCTAGAACGATTCGCAGTTAATCCTGGCCTGCTAGAAACATCAGAAGGCTGTAGACAAATACTGGGACAGCTACAACCGACTCTTAAGACAGGATCAGAAGAACTTAAGTCTTTGTATAATACAATAGCAGTCCTCTATTGTGTACATCAAAAAATAGATGTGAAAGACACCAAGGAAGCCTTAGACAAGATAGAAGAAGAGCAAAACAAAATTAGGAAACAAGCACAGCAAACCGCAGCTGCAGGAAGTAGCAGTCAGGTCAGCCACAATTACCCTGTAGTGCAGAATCATCAGGGGCAAATGGTATATCAGGCCCTGTCACCAAGAACTTTAAATGCATGGGTAAAAGTAATAGAGGAAAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGACTTAAACACCATGCTAAATACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATTAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGATGACAAATAATCCACCTATCCCAGTAGGAGAGATTTATAAAAGATGGATAATCCTAGGGTTAAATAAAATAGTAAGAATGTATAGCCCTGTCAGCATTCTGGACATAAGACAAGGACCAAAGGAACCTTTTAGAGACTATGTAGACCGGTTCTATAAAACCCTAAGAGCCGAACAAGCCACACAGGAAGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAGAATGCGAACCCAGATTGTAAAACTATTTTAAAAGCATTAGGACCAGCAGCCACACTAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCCAGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAATGACAAATTCAGCTACAGTAATGATGCAGAAAGGCAATTTTAGGAACCAAAGAAAAACTGTTAAGTGCTTCAATTGTGGCAAAGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGAAAAAAGGGCTGTTGGAAATGTGGAAGGGAAGGACATCAAATGAAAGACTGTACTGAGAGACAGGCTAATTTTGTAGGGAAAATCTGGCCTTCCCACAAGGGAAGGCCGGGGAATTTCCTTCAGAACAGACCAGAGCCAACAGCCCCACCAGCAGAGAGCTTCAGGTTTGGGGAAGAGACACCAACTAGATGCATCCGGAGTACTACAAGGACTGCTGACACTGAGCTTTTCACAAGGGACTTTCCGCTGGGGACTTTCCAGTAG" @@ -19,7 +19,7 @@ "subtype_start": 789, "subtype_end": 2292, "orientation": "forward", - "distance": 0.3622000000000025, + "distance": 0.3687639991855035, "protein": "MGARASVLSGGELDRWEKIRLRPGGNKRYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPTLKTGSEELKSLYNTIAVLYCVHQKIDVKDTKEALDKIEEEQNKIRKQAQQTAAAGSSSQVSHNYPVVQNHQGQMVYQALSPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPSHKARVLAEAMSQMTNSATVMMQKGNFRNQRKTVKCFNCGKEGHIARNCRAPRKKGCWKCGREGHQMKDCTERQANFVGKIWPSHKGRPGNFLQNRPEPTAPPAESFRFGEETPTRCIRSTTRTADTELFTRDFPLGTFQ", "aminoacids": "MGARASVLSGGELDRWEKIRLRPGGNKRYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPTLKTGSEELKSLYNTIAVLYCVHQKIDVKDTKEALDKIEEEQNKIRKQAQQTAAAGSSSQVSHNYPVVQNHQGQMVYQALSPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPVSILDIRQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPSHKARVLAEAMSQMTNSATVMMQKGNFRNQRKTVKCFNCGKEGHIARNCRAPRKKGCWKCGREGHQMKDCTERQANFVGKIWPSHKGRPGNFLQNRPEPTAPPAESFRFGEETPTRCIRSTTRTADTELFTRDFPLGTFQ*", "nucleotides": "ATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAGAATTGGATAGATGGGAAAAAATTCGGCTAAGGCCAGGAGGAAATAAAAGATATAAACTAAAACATATAGTATGGGCAAGCAGAGAGCTAGAACGATTCGCAGTTAATCCTGGCCTGCTAGAAACATCAGAAGGCTGTAGACAAATACTGGGACAGCTACAACCGACTCTTAAGACAGGATCAGAAGAACTTAAGTCTTTGTATAATACAATAGCAGTCCTCTATTGTGTACATCAAAAAATAGATGTGAAAGACACCAAGGAAGCCTTAGACAAGATAGAAGAAGAGCAAAACAAAATTAGGAAACAAGCACAGCAAACCGCAGCTGCAGGAAGTAGCAGTCAGGTCAGCCACAATTACCCTGTAGTGCAGAATCATCAGGGGCAAATGGTATATCAGGCCCTGTCACCAAGAACTTTAAATGCATGGGTAAAAGTAATAGAGGAAAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGACTTAAACACCATGCTAAATACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATTAATGAGGAAGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGCATGGATGACAAATAATCCACCTATCCCAGTAGGAGAGATTTATAAAAGATGGATAATCCTAGGGTTAAATAAAATAGTAAGAATGTATAGCCCTGTCAGCATTCTGGACATAAGACAAGGACCAAAGGAACCTTTTAGAGACTATGTAGACCGGTTCTATAAAACCCTAAGAGCCGAACAAGCCACACAGGAAGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAGAATGCGAACCCAGATTGTAAAACTATTTTAAAAGCATTAGGACCAGCAGCCACACTAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCCAGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAATGACAAATTCAGCTACAGTAATGATGCAGAAAGGCAATTTTAGGAACCAAAGAAAAACTGTTAAGTGCTTCAATTGTGGCAAAGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGAAAAAAGGGCTGTTGGAAATGTGGAAGGGAAGGACATCAAATGAAAGACTGTACTGAGAGACAGGCTAATTTTGTAGGGAAAATCTGGCCTTCCCACAAGGGAAGGCCGGGGAATTTCCTTCAGAACAGACCAGAGCCAACAGCCCCACCAGCAGAGAGCTTCAGGTTTGGGGAAGAGACACCAACTAGATGCATCCGGAGTACTACAAGGACTGCTGACACTGAGCTTTTCACAAGGGACTTTCCGCTGGGGACTTTCCAGTAG" @@ -31,7 +31,7 @@ "subtype_start": 5040, "subtype_end": 5619, "orientation": "forward", - "distance": 2.1463541666666663, + "distance": 0.7758782995067214, "protein": "MRTQIVKLF", "aminoacids": "MRTQIVKLF*KH*DQQPH*KK**QHAREWEDPAIKQEFWLKQ*AK*QIQLQ**CRKAILGTKEKLLSASIVAKKGT*PEIAGPLEKRAVGNVEGKDIK*KTVLRDRLIL*GKSGLPTREGRGISFRTDQSQQPHQQRASGLGKRHQLDASGVLQGLLTLSFSQGTFRWGLSSRGVAWAGLGSGEPSDAAYKQLLSACTRSLWLDQI*", "nucleotides": "ATGCGAACCCAGATTGTAAAACTATTTTAAAAGCATTAGGACCAGCAGCCACACTAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCCAGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAATGACAAATTCAGCTACAGTAATGATGCAGAAAGGCAATTTTAGGAACCAAAGAAAAACTGTTAAGTGCTTCAATTGTGGCAAAGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGAAAAAAGGGCTGTTGGAAATGTGGAAGGGAAGGACATCAAATGAAAGACTGTACTGAGAGACAGGCTAATTTTGTAGGGAAAATCTGGCCTTCCCACAAGGGAAGGCCGGGGAATTTCCTTCAGAACAGACCAGAGCCAACAGCCCCACCAGCAGAGAGCTTCAGGTTTGGGGAAGAGACACCAACTAGATGCATCCGGAGTACTACAAGGACTGCTGACACTGAGCTTTTCACAAGGGACTTTCCGCTGGGGACTTTCCAGTAGGGGCGTGGCCTGGGCGGGACTGGGGAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTCTGCCTGTACGAGGTCTCTCTGGTTAGACCAGATCTGA" @@ -43,7 +43,7 @@ "subtype_start": 8796, "subtype_end": 9417, "orientation": "forward", - "distance": 2.1430894308943085, + "distance": 0.7756134879067851, "protein": "MRTQIVKLF", "aminoacids": "MRTQIVKLF*KH*DQQPH*KK**QHAREWEDPAIKQEFWLKQ*AK*QIQLQ**CRKAILGTKEKLLSASIVAKKGT*PEIAGPLEKRAVGNVEGKDIK*KTVLRDRLIL*GKSGLPTREGRGISFRTDQSQQPHQQRASGLGKRHQLDASGVLQGLLTLSFSQGTFRWGLSSRGVAWAGLGSGEPSDAAYKQLLSACTRSLWLDQI*", "nucleotides": "ATGCGAACCCAGATTGTAAAACTATTTTAAAAGCATTAGGACCAGCAGCCACACTAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCCAGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAATGACAAATTCAGCTACAGTAATGATGCAGAAAGGCAATTTTAGGAACCAAAGAAAAACTGTTAAGTGCTTCAATTGTGGCAAAGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGAAAAAAGGGCTGTTGGAAATGTGGAAGGGAAGGACATCAAATGAAAGACTGTACTGAGAGACAGGCTAATTTTGTAGGGAAAATCTGGCCTTCCCACAAGGGAAGGCCGGGGAATTTCCTTCAGAACAGACCAGAGCCAACAGCCCCACCAGCAGAGAGCTTCAGGTTTGGGGAAGAGACACCAACTAGATGCATCCGGAGTACTACAAGGACTGCTGACACTGAGCTTTTCACAAGGGACTTTCCGCTGGGGACTTTCCAGTAGGGGCGTGGCCTGGGCGGGACTGGGGAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTCTGCCTGTACGAGGTCTCTCTGGTTAGACCAGATCTGA" @@ -55,7 +55,7 @@ "subtype_start": 2084, "subtype_end": 5096, "orientation": "forward", - "distance": 2.1349950149551358, + "distance": 0.7749542207392719, "protein": "FCRENLAFPQGKAGEFPSEQTRANSPTSRELQVWGRDTN", "aminoacids": "FCRENLAFPQGKAGEFPSEQTRANSPTSRELQVWGRDTN*", "nucleotides": "TTTTGTAGGGAAAATCTGGCCTTCCCACAAGGGAAGGCCGGGGAATTTCCTTCAGAACAGACCAGAGCCAACAGCCCCACCAGCAGAGAGCTTCAGGTTTGGGGAAGAGACACCAACTAG" @@ -67,7 +67,7 @@ "subtype_start": 8376, "subtype_end": 8469, "orientation": "forward", - "distance": 2.12, + "distance": 0.7737226277372263, "protein": "RCIRSTTRTADTELFTRDFPLGTFQ", "aminoacids": "RCIRSTTRTADTELFTRDFPLGTFQ*", "nucleotides": "AGATGCATCCGGAGTACTACAAGGACTGCTGACACTGAGCTTTTCACAAGGGACTTTCCGCTGGGGACTTTCCAGTAG" @@ -79,7 +79,7 @@ "subtype_start": 6061, "subtype_end": 6310, "orientation": "forward", - "distance": 2.098780487804878, + "distance": 0.771956580245806, "protein": "DASGVLQGLLTLSFSQGTFRWGLSSRGVAWAGLGSGEPSDAAYKQLLSACTRSLWLDQI", "aminoacids": "DASGVLQGLLTLSFSQGTFRWGLSSRGVAWAGLGSGEPSDAAYKQLLSACTRSLWLDQI*", "nucleotides": "GATGCATCCGGAGTACTACAAGGACTGCTGACACTGAGCTTTTCACAAGGGACTTTCCGCTGGGGACTTTCCAGTAGGGGCGTGGCCTGGGCGGGACTGGGGAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTCTGCCTGTACGAGGTCTCTCTGGTTAGACCAGATCTGA" @@ -91,7 +91,7 @@ "subtype_start": 8377, "subtype_end": 8653, "orientation": "forward", - "distance": 1.9802197802197803, + "distance": 0.7615586171921224, "protein": "DASGVLQGLLTLSFSQGTFRWGLSSRGVAWAGLGSGEPSDAAYKQLLSACTRSLWLDQI", "aminoacids": "DASGVLQGLLTLSFSQGTFRWGLSSRGVAWAGLGSGEPSDAAYKQLLSACTRSLWLDQI*", "nucleotides": "GATGCATCCGGAGTACTACAAGGACTGCTGACACTGAGCTTTTCACAAGGGACTTTCCGCTGGGGACTTTCCAGTAGGGGCGTGGCCTGGGCGGGACTGGGGAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTCTGCCTGTACGAGGTCTCTCTGGTTAGACCAGATCTGA" @@ -103,7 +103,7 @@ "subtype_start": 5558, "subtype_end": 5850, "orientation": "forward", - "distance": 2.1884615384615382, + "distance": 0.7792385647767734, "protein": "M", "aminoacids": "M", "nucleotides": "ATG" @@ -115,7 +115,7 @@ "subtype_start": 5830, "subtype_end": 6045, "orientation": "forward", - "distance": 2.1875, + "distance": 0.7791629563668745, "protein": "M", "aminoacids": "M", "nucleotides": "ATG" @@ -127,7 +127,7 @@ "subtype_start": 5969, "subtype_end": 6045, "orientation": "forward", - "distance": 2.1653846153846152, + "distance": 0.7774095553714444, "protein": "M", "aminoacids": "M", "nucleotides": "ATG" @@ -141,7 +141,7 @@ "subtype_start": 789, "subtype_end": 2292, "orientation": "forward", - "distance": 0.05400000000000005, + "distance": 0.0801186943620179, "protein": "MGARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALEKIEEEQNKSKKKAQQAAADTGHSNQISQNYPIVQNIQGQVVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNXXXPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRNQRKIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKECTERQANFLGKIWPSYKGRPGNFLQSRPEPTAPPEESFRSGVETTTPSQKQEPIDKELYPLTSLRSLFGNDPSSQ", "aminoacids": "MGARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALEKIEEEQNKSKKKAQQAAADTGHSNQISQNYPIVQNIQGQVVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNXXXPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRNQRKIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKECTERQANFLGKIWPSYKGRPGNFLQSRPEPTAPPEESFRSGVETTTPSQKQEPIDKELYPLTSLRSLFGNDPSSQ*", "nucleotides": "ATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAGAATTAGATCGATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAAATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTTAATCCTGGCCTGTTAGAAACATCAGAAGGCTGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAGATCATTATATAATACAGTAGCAACCCTCTATTGTGTGCATCAAAGGATAGAGATAAAAGACACCAAGGAAGCTTTAGAGAAGATAGAGGAAGAGCAAAACAAAAGTAAGAAAAAAGCACAGCAAGCAGCAGCTGACACAGGACACAGCAACCAGATCAGCCAAAATTACCCTATAGTGCAGAACATCCAGGGGCAAGTGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATCAATGAGGAAGCTGCAGAATGGGATAGAGTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGGATGGATGACAAATAATCYWYCTWTCCCAGTAGGAGAAATTTATAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGAATGTATAGCCCTACCAGCATTCTGGACATAAGACAAGGACCAAAAGAACCCTTTAGAGACTATGTAGACCGGTTCTATAAAACTCTAAGAGCCGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAACCCAGATTGTAAGACTATTTTAAAAGCATTGGGACCWGCAGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCCGGCCATAAGGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAACAAATTCAGCTACCATAATGATGCAGAGAGGCAATTTTAGGAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGAGTGTACTGAGAGACAGGCTAATTTTTTAGGGAAGATCTGGCCTTCCTACAAGGGAAGGCCAGGGAATTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTCTGGGGTAGAGACAACAACTCCCTCTCAGAAGCAGGAGCCGATAGACAAGGAACTGTATCCTTTAACTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAA" @@ -153,7 +153,7 @@ "subtype_start": 2084, "subtype_end": 5096, "orientation": "forward", - "distance": 0.03589232303090717, + "distance": 0.054722889368558514, "protein": "FFREDLAFLQGKAREFSSEQTRANSPTRRELQVWGRDNNSLSEAGADRQGTVSFNFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTRALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKITTESIVIWGKTPRFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKILFLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED", "aminoacids": "FFREDLAFLQGKAREFSSEQTRANSPTRRELQVWGRDNNSLSEAGADRQGTVSFNFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTRALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKITTESIVIWGKTPRFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKILFLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSATVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*", "nucleotides": "TTTTTTAGGGAAGATCTGGCCTTCCTACAAGGGAAGGCCAGGGAATTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTCTGGGGTAGAGACAACAACTCCCTCTCAGAAGCAGGAGCCGATAGACAAGGAACTGTATCCTTTAACTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACTCATAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGATTGGTTGCACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAAAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCCGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATGAAGACTTCAGGAAGTATACTGCATTTACCATACCTAGTATAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGACATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAGCTGAGACAACATCTGTTGAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTGAATTGGGCAAGTCAGATTTACCCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAGAGCATTAACAGAAGTAATACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTCTAAAAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAGCAGGGGCAAGGCCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGGAAATATGCAAGAACGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGTATAGTAATATGGGGAAAGACTCCTAGATTTAAACTACCCATACAAAAGGAAACATGGGAAACATGGTGGACAGAATATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCTTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGGTATGTTACTAACAAAGGAAGACAAAAGGTTGTCCCCCTAACTAACACAACAAATCAGAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATCAAAGTGAATCAGAGTTAGTCAATCAAATAATAGAGCAGTTAATAAAAAAGGAAAAGGTCTATCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTGCTGGAATCAGGAAAATACTATTTTTAGATGGAATAGATAAGGCCCAAGATGAACATGAGAAATATCACAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGAGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAACTAGATTGTACACATTTAGAAGGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAAACAGGGCAGGAAACAGCATATTTTCTTTTAAAATTAGCAGGAAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTGCTACGGTTAAGGCCGCCTGTTGGTGGGCGGGAATCAAGCAGGAATTTGGAATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTCCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGACATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG" @@ -165,7 +165,7 @@ "subtype_start": 5040, "subtype_end": 5619, "orientation": "forward", - "distance": 0.0625, + "distance": 0.09157509157509158, "protein": "MENRWQVMIVWQVDRMRIRTWKSLVKHHMYVSGKARGWFYRHHYERTHPRISSEVYIPLGDARLVITTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPELADQLIHLYYFDCFSDSAIRKALLGHIVSPRCEYQAGHNKVGSLQYLALAALITPKKIKPPLPSVTKLTEDRWNKPQKTKGHRGSHTMNGH", "aminoacids": "MENRWQVMIVWQVDRMRIRTWKSLVKHHMYVSGKARGWFYRHHYERTHPRISSEVYIPLGDARLVITTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPELADQLIHLYYFDCFSDSAIRKALLGHIVSPRCEYQAGHNKVGSLQYLALAALITPKKIKPPLPSVTKLTEDRWNKPQKTKGHRGSHTMNGH*", "nucleotides": "ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAAAAGTTTAGTAAAACACCATATGTATGTTTCAGGGAAAGCTAGGGGATGGTTTTATAGACATCACTATGAAAGAACTCATCCAAGAATAAGTTCAGAAGTATACATCCCACTAGGGGATGCTAGATTGGTAATAACAACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGGAAAAGGAGATATAGCACACAAGTAGACCCTGAACTAGCAGACCAACTAATTCATCTGTATTACTTTGACTGTTTTTCAGACTCTGCTATAAGAAAGGCCTTATTAGGACATATAGTTAGCCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGATCTCTACAATACTTGGCACTAGCAGCATTAATAACACCAAAAAAGATAAAGCCACCTTTGCCTAGTGTTACAAAACTGACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCACACAATGAATGGACACTAG" @@ -177,7 +177,7 @@ "subtype_start": 5558, "subtype_end": 5850, "orientation": "forward", - "distance": 0.21153846153845945, + "distance": 0.2543940795559648, "protein": "MEQAPEDQGPQREPHNEWTLELLEELKNEAVRHFPRIWLHGLGQHIYETYGDTWAGVEAIIRILQQLLFIHFRIGCRHSRIGVTQQKRARNGASRS", "aminoacids": "MEQAPEDQGPQREPHNEWTLELLEELKNEAVRHFPRIWLHGLGQHIYETYGDTWAGVEAIIRILQQLLFIHFRIGCRHSRIGVTQQKRARNGASRS*T", "nucleotides": "ATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCACACAATGAATGGACACTAGAGCTTTTAGAGGAGCTTAAGAATGAAGCTGTTAGACATTTTCCTAGGATTTGGCTCCATGGCTTAGGGCAACATATCTATGAAACTTATGGGGATACTTGGGCAGGAGTGGAAGCCATAATAAGAATTCTGCAACAACTGCTGTTTATCCATTTCAGAATTGGGTGTCGACATAGCAGAATAGGCGTTACTCAACAGAAGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACT" @@ -189,7 +189,7 @@ "subtype_start": 5830, "subtype_end": 6045, "orientation": "forward", - "distance": 0.29166666666666674, + "distance": 0.31992687385740404, "protein": "MEPVDPRLEPWKHPGSQPKTACTTCYCKKCCFHCQVCFMTKALGISYGRKKRRQRRRPPQDSQTHQVSLSKQ", "aminoacids": "MEPVDPRLEPWKHPGSQPKTACTTCYCKKCCFHCQVCFMTKALGISYGRKKRRQRRRPPQDSQTHQVSLSKQ", "nucleotides": "ATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCATCCAGGAAGTCAGCCTAAAACTGCTTGTACCACTTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATGACAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGACCTCCTCAAGACAGTCAGACTCATCAAGTTTCTCTATCAAAGCAG" @@ -201,7 +201,7 @@ "subtype_start": 5969, "subtype_end": 6045, "orientation": "forward", - "distance": 0.5769230769230769, + "distance": 0.48200514138817474, "protein": "MAGRSGDSDEDLLKTVRLIKFLYQSS", "aminoacids": "MAGRSGDSDEDLLKTVRLIKFLYQSS", "nucleotides": "ATGGCAGGAAGAAGCGGAGACAGCGACGAAGACCTCCTCAAGACAGTCAGACTCATCAAGTTTCTCTATCAAAGCAGT" @@ -213,7 +213,7 @@ "subtype_start": 6061, "subtype_end": 6310, "orientation": "forward", - "distance": 0.7060975609756097, + "distance": 0.53246275519588, "protein": "SIVIIEYRKILRQRKIDRLIDRLIERAEDSGNESEGEVSALVEMGVEMGHHAPWDIDDL", "aminoacids": "MQPIQIAIVALVVAIIIAIVV*SIVIIEYRKILRQRKIDRLIDRLIERAEDSGNESEGEVSALVEMGVEMGHHAPWDIDDL*", "nucleotides": "ATGCAACCTATACAAATAGCAATAGTAGCATTAGTAGTAGCAATAATAATAGCAATAGTTGTGTGATCCATAGTAATCATAGAATATAGGAAAATATTAAGACAAAGGAAAATAGACAGGTTAATTGATAGACTAATAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGAGAAGTGTCAGCACTTGTGGAGATGGGGGTGGAGATGGGGCACCATGCTCCTTGGGATATTGATGATCTGTAG" @@ -225,7 +225,7 @@ "subtype_start": 6224, "subtype_end": 8795, "orientation": "forward", - "distance": 0.0867990654205606, + "distance": 0.12280585765759788, "protein": "MRVKEKCQHLWRWGWRWGTMLLGILMICSATEKLWVTVYYGVPVWKEATTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEVVLVNVTENFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVSLKCTDLGNATNTNSSNTNSSSGEMMMEKGEIKNCSFNISTSIRNKVQKEYAFFYKLDIVPIDNDTTSYTLTSCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNNKTFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEDVVIRSANFTDNAKTIIVQLNQSVEINCTRPNNNTRKSIRIQRGPGRAFVTIGKIGNMRQAHCNISRAKWNATLKQIASKLREQFGNNKTIIFKQSSGGDPEIVTHSFNCGGEFFYCNSTQLFNSTWFNSTWSTEGSNNTEGSDTITLPCRIKQFINMWQEVGKAMYAPPISGQIRCSSNITGLLLTRDGGNNNNGSEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQREKRAVGIGALFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARILAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKSLEQIWNNMTWMEWDREINNYTSLIHSLIEESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGGLVGLRIVFAVLSIVNRVRQGYSPLSFQTHLPNPGGPDRPEGIEEEGGERDRDRSIRLVNGSLALIWDDLRSLCLFSYHRLRDLLLIVTRIVELLGRRGWEALKYWWNLLQYWSQELKNSAVSLLNATAIAVAEGTDRVIEVVQGAYRAIRHIPRRIRQGLERILL", "aminoacids": "MRVKEKCQHLWRWGWRWGTMLLGILMICSATEKLWVTVYYGVPVWKEATTTLFCASDAKAYDAEVHNVWATHACVPTDPNPQEVVLVNVTENFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVSLKCTDLGNATNTNSSNTNSSSGEMMMEKGEIKNCSFNISTSIRNKVQKEYAFFYKLDIVPIDNDTTSYTLTSCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNNKTFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEDVVIRSANFTDNAKTIIVQLNQSVEINCTRPNNNTRKSIRIQRGPGRAFVTIGKIGNMRQAHCNISRAKWNATLKQIASKLREQFGNNKTIIFKQSSGGDPEIVTHSFNCGGEFFYCNSTQLFNSTWFNSTWSTEGSNNTEGSDTITLPCRIKQFINMWQEVGKAMYAPPISGQIRCSSNITGLLLTRDGGNNNNGSEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQREKRAVGIGALFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARILAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKSLEQIWNNMTWMEWDREINNYTSLIHSLIEESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGGLVGLRIVFAVLSIVNRVRQGYSPLSFQTHLPNPGGPDRPEGIEEEGGERDRDRSIRLVNGSLALIWDDLRSLCLFSYHRLRDLLLIVTRIVELLGRRGWEALKYWWNLLQYWSQELKNSAVSLLNATAIAVAEGTDRVIEVVQGAYRAIRHIPRRIRQGLERILL*DGWQVVKK*", "nucleotides": "ATGAGAGTGAAGGAGAAGTGTCAGCACTTGTGGAGATGGGGGTGGAGATGGGGCACCATGCTCCTTGGGATATTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAAGGAAGCAACCACCACTCTATTTTGTGCATCAGATGCTAAAGCATATGATGCAGAGGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGTATTGGTAAATGTGACAGAAAATTTTAACATGTGGAAAAATGACATGGTAGAACAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTAGTTTAAAGTGCACTGATTTGGGGAATGCTACTAATACCAATAGTAGTAATACCAATAGTAGTAGCGGGGAAATGATGATGGAGAAAGGAGAGATAAAAAACTGCTCTTTCAATATCAGCACAAGCATAAGAAATAAGGTGCAGAAAGAATATGCATTCTTTTATAAACTTGATATAGTACCAATAGATAATGATACTACCAGCTATACGTTGACAAGTTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAATGTAATAATAAGACGTTCAATGGAACAGGACCATGTACAAATGTCAGCACAGTACAATGTACACATGGAATTAGGCCAGTAGTATCAACTCAACTGCTGTTAAATGGCAGTCTAGCAGAAGAAGATGTAGTAATTAGATCTGCCAATTTCACAGACAATGCTAAAACCATAATAGTACAGCTGAACCAATCTGTAGAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATCCGTATCCAGAGAGGACCAGGGAGAGCATTTGTTACAATAGGAAAAATAGGAAATATGAGACAAGCACATTGTAACATTAGTAGAGCAAAATGGAATGCCACTTTAAAACAGATAGCTAGCAAATTAAGAGAACAATTTGGAAATAATAAAACAATAATCTTTAAGCAATCCTCAGGAGGGGACCCAGAAATTGTAACGCACAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAATTCAACACAACTGTTTAATAGTACTTGGTTTAATAGTACTTGGAGTACTGAAGGGTCAAATAACACTGAAGGAAGTGACACAATCACACTCCCATGCAGAATAAAACAATTTATAAACATGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCATCAGCGGACAAATTAGATGTTCATCAAATATTACAGGGCTGCTATTAACAAGAGATGGTGGTAATAACAACAATGGGTCCGAGATCTTCAGACCTGGAGGAGGAGATATGAGGGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAAAATTGAACCATTAGGAGTAGCACCCACCAAGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTTTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAATGACGCTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAGCAGCAGAACAATTTGCTGAGGGCTATTGAGGCGCAACAGCATCTGTTGCAACTCACAGTCTGGGGCATCAAACAGCTCCAGGCAAGAATCCTGGCTGTGGAAAGATACCTAAAGGATCAACAGCTCCTGGGGATTTGGGGCTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCTTGGAATGCTAGTTGGAGTAATAAATCTCTGGAACAGATTTGGAATAACATGACCTGGATGGAGTGGGACAGAGAAATTAACAATTACACAAGCTTAATACACTCCTTAATTGAAGAATCGCAAAACCAGCAAGAAAAGAATGAACAAGAATTATTGGAATTAGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAATTGGCTGTGGTATATAAAATTATTCATAATGATAGTAGGAGGCTTGGTAGGTTTAAGAATAGTTTTTGCTGTACTTTCTATAGTGAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAAACCCGGGGGGACCCGACAGGCCCGAAGGAATAGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCATTCGATTAGTGAACGGATCCTTAGCACTTATCTGGGACGATCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAATATTGGTGGAATCTCCTACAATATTGGAGTCAGGAGCTAAAGAATAGTGCTGTTAGCTTGCTCAATGCCACAGCTATAGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAGGAGCTTATAGAGCTATTCGCCACATACCTAGAAGAATAAGACAGGGCTTGGAAAGGATTTTGCTATAAGATGGGTGGCAAGTGGTCAAAAAGTAG" @@ -237,7 +237,7 @@ "subtype_start": 8376, "subtype_end": 8469, "orientation": "forward", - "distance": 0.19999999999999996, + "distance": 0.24390243902439024, "protein": "RPTSQTRGDPTGPKE", "aminoacids": "RPTSQTRGDPTGPKE*KKKVERETETDPFD**", "nucleotides": "AGACCCACCTCCCAAACCCGGGGGGACCCGACAGGCCCGAAGGAATAGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCATTCGATTAGTGA" @@ -249,7 +249,7 @@ "subtype_start": 8377, "subtype_end": 8653, "orientation": "forward", - "distance": 0.16483516483516492, + "distance": 0.210025203024363, "protein": "DPPPKPGGTRQARRNRRRRWRERQRQIHSISERILSTYLGRSAEPVPLQLPPLERLTLDCNEDCGTSGTQGVGSPQILVESPTILESGAKE", "aminoacids": "DPPPKPGGTRQARRNRRRRWRERQRQIHSISERILSTYLGRSAEPVPLQLPPLERLTLDCNEDCGTSGTQGVGSPQILVESPTILESGAKE*", "nucleotides": "GACCCACCTCCCAAACCCGGGGGGACCCGACAGGCCCGAAGGAATAGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCATTCGATTAGTGAACGGATCCTTAGCACTTATCTGGGACGATCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAATATTGGTGGAATCTCCTACAATATTGGAGTCAGGAGCTAAAGAATAG" @@ -261,7 +261,7 @@ "subtype_start": 8796, "subtype_end": 9417, "orientation": "forward", - "distance": 0.16991869918698432, + "distance": 0.21510909839439352, "protein": "MGGKWSKSSVIGWPTVRERMRRAEPAADGVGAASRDLEKHGAITSSNTAATNAACAWLEAQEEEEVGFPVTPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIHSQRRQDILDLWIYHTQGYFPDWQNYTPGPGIRYPLTFGWCYKLVPVEPDKVEEANKGENTSLLHPVSLHGMDDPEREVLEWRFDSRLAFHHVARELHPEYFKNC", "aminoacids": "MGGKWSKSSVIGWPTVRERMRRAEPAADGVGAASRDLEKHGAITSSNTAATNAACAWLEAQEEEEVGFPVTPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIHSQRRQDILDLWIYHTQGYFPDWQNYTPGPGIRYPLTFGWCYKLVPVEPDKVEEANKGENTSLLHPVSLHGMDDPEREVLEWRFDSRLAFHHVARELHPEYFKNC*", "nucleotides": "ATGGGTGGCAAGTGGTCAAAAAGTAGTGTGATTGGATGGCCTACTGTAAGGGAAAGAATGAGACGAGCTGAGCCAGCAGCAGATGGGGTGGGAGCAGCATCTCGAGACCTGGAAAAACATGGAGCAATCACAAGTAGCAATACAGCAGCTACCAATGCTGCTTGTGCCTGGCTAGAAGCACAAGAGGAGGAGGAGGTGGGTTTTCCAGTCACACCTCAGGTACCTTTAAGACCAATGACTTACAAGGCAGCTGTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCACTCCCAAAGAAGACAAGATATCCTTGATCTGTGGATCTACCACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGATCAGATATCCATTGACCTTTGGATGGTGCTACAAGCTAGTACCAGTTGAGCCAGATAAGGTAGAAGAGGCCAATAAAGGAGAGAACACCAGCTTGTTACACCCTGTGAGCCTGCATGGAATGGATGACCCTGAGAGAGAAGTGTTAGAGTGGAGGTTTGACAGCCGCCTAGCATTTCATCACGTGGCCCGAGAGCTGCATCCGGAGTACTTCAAGAACTGCTGA" @@ -275,7 +275,7 @@ "subtype_start": 6224, "subtype_end": 8795, "orientation": "forward", - "distance": 1.9582943925233647, + "distance": 0.7595309512374151, "protein": "MNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLRKKKSVTVLDVGDAYFSVPLDKEFRKYTAFTIPSRNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPEIVIYQYMDDLYVGSDLEIGQHRIKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEIVPLTKEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYAKMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDTQWRALRCCI", "aminoacids": "EGLIWSQKRQDILDLWIYHTQGYFPDWQNYTPGPGTRFPLTFGWCFKLVPVDPEKVEEANAGENNSLLHPISLHGMEDPEKEVLMWKFDSRLAFHHMARELHPEYYKNC*LRAIYKGLSAGDFPGRRGLGGTGEWRALRCCI*AAAFCLYWVSLVRPDLSLGALWLAREPTA*ASIKLALSALSSVCPSVV*LW*LEIPQTLLVSVENL*QWRPNRDLKAKEKPEELSRRRTRLAEARTARGEGRRLVSTPKILTSGG*KERDGCESVSIKCGRIRQMGKNSVKARGKEKI*IKTYSMGKQGARTIRS*SWPVRNIRRL*TNTGTATTIPSDRIRRT*III*YNSNPLLCASKDRGKRHQGSFREGRGRAKQK*EKGTASSS*HRKQQPGQPKLPYSAEHPGANGTSGHIT*NFKCMGKSSRREGFQPRSNTHVFSIIRRSHPTRFKHHAKHSGGTSSSHANVKRDHQ*GSCRMG*IAPSACRAYCTRPDERAKGK*HSRNY*YPSGTNRMDDK*STYPSRRNL*KMDNHGIK*NSKDV*SYQHSGHKTRTKGTL*RLCRSVL*NSKSRASFTGGKKLDDRNLVGPKCEPRL*DYFESIGTSRYIRRNDDSMSGSGRTRP*SKSFGGSNEPSNKFSYHNDAERQF*EPKKEC*VFQLWQRRAHSQKLQGP*EKGLLEMWKGRTPNERLY*ETG*FFREDLAFPQGKAREFPSEQTRANSPTRRELQVWGRDNNSRSEAGADRQGTVSFSFPQITLWQRPLVTIRIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLRKKKSVTVLDVGDAYFSVPLDKEFRKYTAFTIPSRNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPEIVIYQYMDDLYVGSDLEIGQHRIKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEIVPLTKEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYAKMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDTQWRALRCCI*", "nucleotides": "GAAGGGCTAATTTGGTCCCAGAAAAGACAAGATATCCTTGATCTGTGGATCTACCACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCGGGGACCAGATTTCCACTGACCTTTGGATGGTGCTTCAAGCTAGTACCAGTTGATCCAGAGAAGGTAGAAGAGGCCAATGCAGGAGAGAACAACAGCTTGTTACACCCTATAAGCCTGCATGGGATGGAGGACCCGGAGAAAGAAGTGTTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCACATGGCCCGAGAGCTGCATCCGGAGTACTACAAGAATTGCTGACTTCGAGCTATCTACAAGGGACTTTCCGCTGGGGACTTTCCAGGGAGGCGTGGCCTGGGCGGGACTGGGGAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTTTGCCTGTACTGGGTCTCTCTGGTTAGACCAGATCTGAGCCTGGGAGCTCTCTGGCTAGCTAGGGAACCCACTGCTTAAGCCTCAATAAAGCTTGCCTTGAGTGCTTTAAGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGGTAACTAGAGATCCCTCAGACCCTTTTAGTCAGTGTGGAAAATCTCTAGCAGTGGCGCCCGAACAGGGACTTGAAAGCGAAAGAGAAACCAGAGGAGCTCTCTCGACGCAGGACTCGGCTTGCTGAAGCGCGCACGGCAAGAGGCGAGGGGCGGCGACTGGTGAGTACGCCAAAAATTTTGACTAGCGGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCGTCAGTATTAAGTGCGGGAGAATTAGACAAATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTTAATCCTGGCCTGTTAGAAACATCAGAAGGCTGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAGATCATTATATAATACAATAGCAACCCTCTATTGTGTGCATCAAAAGATAGAGGTAAAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGCAGCAGCTGACACAGGAAACAACAGCCAGGTCAGCCAAAATTACCCTATAGTGCAGAACATCCAGGGGCAAATGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCACCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAGCCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGGATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCATGGGATTAAATAAAATAGTAAGGATGTATAGTCCTACCAGCATTCTGGACATAAGACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGATCGGTTCTATAAAACTCTAAGAGCCGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAACCCAGATTGTAAGACTATTTTGAAAGCATTGGGACCAGCCGCTACATTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCCGGCCATAAAGCAAGAGTTTTGGCGGAAGCAATGAGCCAAGTAACAAATTCAGCTACCATAATGATGCAGAAAGGCAATTTTAGGAACCAAAAAAGGAATGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGGAAAAGGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGATTGTACTGAGAGACAGGCTAATTTTTTAGGGAAGATCTGGCCTTCCCACAAGGGAAGGCCAGGGAATTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAACAACTCCCGCTCAGAAGCAGGAGCCGATAGACAAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAAGGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAATTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACTCATAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGATTGGTTGCACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCCGCAGGGTTAAGAAAGAAAAAATCAGTAACAGTACTGGATGTGGGGGATGCATATTTTTCAGTTCCCTTAGATAAAGAATTTAGGAAATATACTGCATTTACCATACCCAGTAGAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATTTTAGAGCCTTTTAGAAAACAAAATCCAGAAATAGTTATCTATCAATACATGGATGATTTATATGTAGGATCTGATTTAGAAATAGGGCAGCATAGAATAAAAATAGAGGAACTGAGACAACATCTGTTGAGATGGGGATTTACCACACCAGACAAAAAACATCAGAAAGAACCCCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTGAATTGGGCAAGTCAGATTTACCCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAAATAGTACCACTAACAAAAGAAGCAGAGCTGGAACTGGCAGAAAACAGGGAAATTCTAAAAGAACCAGTACATGGAGTATATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAGCAGGGGCAAGGTCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAAAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTACCCATACAAAAAGAAACATGGGAAGCATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAACAGAGGAAGACAAAAAGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAATTACAAGCAATTCATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATACCCAGTGGCGAGCCCTCAGATGCTGCATATAA" @@ -287,7 +287,7 @@ "subtype_start": 789, "subtype_end": 2292, "orientation": "forward", - "distance": 0.13880000000000003, + "distance": 0.18292040063257775, "protein": "MGARASVLSAGELDKWEKIRLRPGGKKKYRLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTIATLYCVHQKIEVKDTKEALEKVEEEQNKSKKKAQQAAADTGNNSQVSQNYPIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIIMGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSATIMMQKGNFRNQKRNVKCFNCGKEGHIARNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETTTPAQKQEPIDKELYPLASLRSLFGNDPSSQ", "aminoacids": "MGARASVLSAGELDKWEKIRLRPGGKKKYRLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTIATLYCVHQKIEVKDTKEALEKVEEEQNKSKKKAQQAAADTGNNSQVSQNYPIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIIMGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSATIMMQKGNFRNQKRNVKCFNCGKEGHIARNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETTTPAQKQEPIDKELYPLASLRSLFGNDPSSQ*", "nucleotides": "ATGGGTGCGAGAGCGTCAGTATTAAGTGCGGGAGAATTAGACAAATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTTAATCCTGGCCTGTTAGAAACATCAGAAGGCTGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAGATCATTATATAATACAATAGCAACCCTCTATTGTGTGCATCAAAAGATAGAGGTAAAAGACACCAAGGAAGCTTTAGAGAAGGTAGAGGAAGAGCAAAACAAAAGTAAGAAAAAGGCACAGCAAGCAGCAGCTGACACAGGAAACAACAGCCAGGTCAGCCAAAATTACCCTATAGTGCAGAACATCCAGGGGCAAATGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCACCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAGCCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGGATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCATGGGATTAAATAAAATAGTAAGGATGTATAGTCCTACCAGCATTCTGGACATAAGACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGATCGGTTCTATAAAACTCTAAGAGCCGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAACCCAGATTGTAAGACTATTTTGAAAGCATTGGGACCAGCCGCTACATTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCCGGCCATAAAGCAAGAGTTTTGGCGGAAGCAATGAGCCAAGTAACAAATTCAGCTACCATAATGATGCAGAAAGGCAATTTTAGGAACCAAAAAAGGAATGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGGAAAAGGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGATTGTACTGAGAGACAGGCTAATTTTTTAGGGAAGATCTGGCCTTCCCACAAGGGAAGGCCAGGGAATTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAACAACTCCCGCTCAGAAGCAGGAGCCGATAGACAAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAA" @@ -299,7 +299,7 @@ "subtype_start": 2084, "subtype_end": 5096, "orientation": "forward", - "distance": 0.7912263210369039, + "distance": 0.5606657906263733, "protein": "FFREDLAFPQGKAREFPSEQTRANSPTRRELQVWGRDNNSRSEAGADRQGTVSFSFPQITLWQRPLVTIRIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLRKKKSVTVLDVGDAYFSVPLDKEFRKYTAFTIPSRNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPEIVIYQYMDDLYVGSDLEIGQHRIKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEIVPLTKEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYAKMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDTQWRALRCCI", "aminoacids": "FFREDLAFPQGKAREFPSEQTRANSPTRRELQVWGRDNNSRSEAGADRQGTVSFSFPQITLWQRPLVTIRIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLRKKKSVTVLDVGDAYFSVPLDKEFRKYTAFTIPSRNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPEIVIYQYMDDLYVGSDLEIGQHRIKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEIVPLTKEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYAKMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDTQWRALRCCI*", "nucleotides": "TTTTTTAGGGAAGATCTGGCCTTCCCACAAGGGAAGGCCAGGGAATTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAACAACTCCCGCTCAGAAGCAGGAGCCGATAGACAAGGAACTGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAAGGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAATTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACTCATAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGATTGGTTGCACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCCGCAGGGTTAAGAAAGAAAAAATCAGTAACAGTACTGGATGTGGGGGATGCATATTTTTCAGTTCCCTTAGATAAAGAATTTAGGAAATATACTGCATTTACCATACCCAGTAGAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATTTTAGAGCCTTTTAGAAAACAAAATCCAGAAATAGTTATCTATCAATACATGGATGATTTATATGTAGGATCTGATTTAGAAATAGGGCAGCATAGAATAAAAATAGAGGAACTGAGACAACATCTGTTGAGATGGGGATTTACCACACCAGACAAAAAACATCAGAAAGAACCCCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTGAATTGGGCAAGTCAGATTTACCCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGAACCAAAGCACTAACAGAAATAGTACCACTAACAAAAGAAGCAGAGCTGGAACTGGCAGAAAACAGGGAAATTCTAAAAGAACCAGTACATGGAGTATATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAGCAGGGGCAAGGTCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAAAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTACCCATACAAAAAGAAACATGGGAAGCATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAACAGAGGAAGACAAAAAGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAATTACAAGCAATTCATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATACCCAGTGGCGAGCCCTCAGATGCTGCATATAA" @@ -311,7 +311,7 @@ "subtype_start": 5040, "subtype_end": 5619, "orientation": "forward", - "distance": 1.9968750000000002, + "distance": 0.7630761882015763, "protein": "MRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDTQWRALRCCI", "aminoacids": "MRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDTQWRALRCCI*", "nucleotides": "ATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTACCCATACAAAAAGAAACATGGGAAGCATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAACAGAGGAAGACAAAAAGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAATTACAAGCAATTCATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATACCCAGTGGCGAGCCCTCAGATGCTGCATATAA" @@ -323,7 +323,7 @@ "subtype_start": 5558, "subtype_end": 5850, "orientation": "forward", - "distance": 1.9602564102564104, + "distance": 0.7597138030408427, "protein": "MRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDT", "aminoacids": "MRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDT", "nucleotides": "ATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTACCCATACAAAAAGAAACATGGGAAGCATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAACAGAGGAAGACAAAAAGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAATTACAAGCAATTCATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATACC" @@ -335,7 +335,7 @@ "subtype_start": 8796, "subtype_end": 9417, "orientation": "forward", - "distance": 1.965040650406504, + "distance": 0.7601585105044659, "protein": "MRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDTQWRALRCCI", "aminoacids": "MRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWEAWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDTQWRALRCCI*", "nucleotides": "ATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTACCCATACAAAAAGAAACATGGGAAGCATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAACAGAGGAAGACAAAAAGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAATTACAAGCAATTCATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATACCCAGTGGCGAGCCCTCAGATGCTGCATATAA" @@ -347,7 +347,7 @@ "subtype_start": 5830, "subtype_end": 6045, "orientation": "forward", - "distance": 2.0305555555555554, + "distance": 0.7660867742611612, "protein": "MVPVRERTHSRSRNLLCRWGS", "aminoacids": "MVPVRERTHSRSRNLLCRWGS*QGD*IRKSRICY*QRKTKSCLPN*HNKSED*ITSNSSSFAGFGIRSKHSNRLTICIRNHSSTTRY", "nucleotides": "ATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAACAGAGGAAGACAAAAAGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAATTACAAGCAATTCATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATAC" @@ -359,7 +359,7 @@ "subtype_start": 5969, "subtype_end": 6045, "orientation": "forward", - "distance": 2.0153846153846153, + "distance": 0.7647402218330415, "protein": "MVPVRERTHSRSRNLLCRWGS", "aminoacids": "MVPVRERTHSRSRNLLCRWGS*QGD*IRKSRICY*QRKTKSCLPN*HNKSED*ITSNSSSFAGFGIRSKHSNRLTICIRNHSSTTRY", "nucleotides": "ATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAACAGAGGAAGACAAAAAGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAATTACAAGCAATTCATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATAC" @@ -371,7 +371,7 @@ "subtype_start": 6061, "subtype_end": 6310, "orientation": "forward", - "distance": 2.09390243902439, + "distance": 0.7715466882358227, "protein": "IPSGEPSDAAYKQLLFACTGSLWLDQI", "aminoacids": "IPSGEPSDAAYKQLLFACTGSLWLDQI*", "nucleotides": "ATACCCAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTTTGCCTGTACTGGGTCTCTCTGGTTAGACCAGATCTGA" @@ -383,7 +383,7 @@ "subtype_start": 8376, "subtype_end": 8469, "orientation": "forward", - "distance": 2.1133333333333333, + "distance": 0.7731707317073171, "protein": "IPSGEPSDAAYKQLLFACTGSLWLDQI", "aminoacids": "IPSGEPSDAAYKQLLFACTGSLWLDQI*", "nucleotides": "ATACCCAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTTTGCCTGTACTGGGTCTCTCTGGTTAGACCAGATCTGA" @@ -395,7 +395,7 @@ "subtype_start": 8377, "subtype_end": 8653, "orientation": "forward", - "distance": 2.065934065934066, + "distance": 0.7691678258734964, "protein": "IPSGEPSDAAYKQLLFACTGSLWLDQI", "aminoacids": "IPSGEPSDAAYKQLLFACTGSLWLDQI*", "nucleotides": "ATACCCAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTTTGCCTGTACTGGGTCTCTCTGGTTAGACCAGATCTGA" @@ -409,7 +409,7 @@ "subtype_start": 789, "subtype_end": 2292, "orientation": "forward", - "distance": 0.15900000000000003, + "distance": 0.20410783055198978, "protein": "MGARASVLSGGKLDQWEKIRLRPGGKKKYQLKHIVWASKELERFAVNPGLLETTEGCRQILGQLQPSLQTGSEELKSLYNTVATLYCVHQRIDVKDTKEALDKIEEEQNKSKEKAKQAAADTGNSNQVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKESFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPGATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRSQRKIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETTTPSQKQESTGKELYPPLASLRSLFGNDPSSQ", "aminoacids": "MGARASVLSGGKLDQWEKIRLRPGGKKKYQLKHIVWASKELERFAVNPGLLETTEGCRQILGQLQPSLQTGSEELKSLYNTVATLYCVHQRIDVKDTKEALDKIEEEQNKSKEKAKQAAADTGNSNQVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVIEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKESFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNSNPDCKTILKALGPGATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRSQRKIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQSRPEPTAPPEESFRFGEETTTPSQKQESTGKELYPPLASLRSLFGNDPSSQ*R*", "nucleotides": "ATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAAAATTAGATCAATGGGAGAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATCAATTAAAACATATAGTATGGGCAAGCAAGGAACTAGAACGATTTGCAGTTAATCCTGGCCTGTTAGAAACAACAGAAGGATGTAGACAAATACTGGGACAGCTACAACCATCTCTTCAGACAGGATCAGAAGAACTTAAATCATTATATAATACAGTAGCAACCCTCTATTGTGTGCATCAAAGGATAGATGTAAAAGACACCAAGGAAGCATTAGATAAGATAGAGGAAGAGCAAAACAAGAGTAAGGAAAAAGCAAAACAAGCAGCAGCTGACACAGGAAACAGCAACCAGGTCAGCCAAAATTACCCTATAGTGCAGAACCTTCAGGGCCAAATGGTACACCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAATAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAATACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGAGTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACCACTAGTACCCTTCAGGAACAAATAGGATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGGATGTATAGTCCTACCAGCATTCTGGATATAAGACAAGGACCAAAAGAATCCTTTAGAGATTATGTAGACCGGTTCTACAAAACTCTAAGAGCTGAGCAAGCCTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATTCAAACCCAGATTGTAAGACTATCTTAAAAGCATTGGGACCAGGAGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCCGGCCATAAAGCAAGAGTCTTGGCTGAAGCAATGAGCCAAGTAACAAATTCAGCTACCATAATGATGCAGAGAGGCAATTTTAGGAGCCAAAGGAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAGGGGCATATAGCCAGAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGATTGTACTGAAAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGGAGGCCAGGAAATTTCCTTCAGAGCAGGCCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAACAACTCCCTCTCAGAAGCAGGAGTCGACAGGCAAGGAACTGTATCCTCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAG" @@ -421,7 +421,7 @@ "subtype_start": 2084, "subtype_end": 5096, "orientation": "forward", - "distance": 0.10618145563310066, + "distance": 0.14621890274040306, "protein": "FFRENLAFPQGEARKFPSEQARANSPTRRELQVWGRDNNSLSEAGVDRQGTVSSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQISIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKESWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARVRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGASNRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLINKEKVYLAWVPAHKGIGGNEQVDKLVSTGIRKVLFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAREIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKVKIIRDYGKQMAGDDCVASRQDED", "aminoacids": "FFRENLAFPQGEARKFPSEQARANSPTRRELQVWGRDNNSLSEAGVDRQGTVSSFSFPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQISIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKESWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARVRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFRLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGASNRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLINKEKVYLAWVPAHKGIGGNEQVDKLVSTGIRKVLFLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAREIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKVKIIRDYGKQMAGDDCVASRQDED*", "nucleotides": "TTTTTTAGGGAAAATCTGGCCTTCCCACAAGGGGAGGCCAGGAAATTTCCTTCAGAGCAGGCCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGAGACAACAACTCCCTCTCAGAAGCAGGAGTCGACAGGCAAGGAACTGTATCCTCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTACCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATTAAAGTAAGACAGTATGATCAGATATCCATAGAAATCTGTGGACATAAAGCTATAGGGACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAAATTGGTTGTACTTTAAATTTCCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAACAGAAATTTGTACAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAAGACAGCACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAAAGAACTCAAGATTTCTGGGAAGTTCAATTAGGGATACCACATCCAGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATGAGGATTTCAGGAAGTATACTGCATTTACCATACCTAGTATAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAATGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGACATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAATTGAGACAACATCTGTTGAGGTGGGGATTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAGAAAAAGAAAGCTGGACTGTCAATGACATACAAAAGTTAGTGGGTAAATTGAATTGGGCAAGTCAGATTTATGCAGGGATCAAAGTAAAACAATTATGTAAACTTCTTAGGGGAGCCAAAGCACTAACAGAAGTAATACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAGATTTTAAAAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAGCAGGGGCAAGGCCAATGGACATATCAGATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAGTGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAGCCACTGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAGGTTACCCATACAAAAAGAAACATGGGAAACATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCATCTAATAGAGAGACTAAATTAGGAAAAGCAGGATATGTTACTGACAGAGGAAGACAGAAAGTTGTCTCCCTAACTGACACAACAAATCAGAAGACTGAGTTACAAGCAATTCATCTAGCTTTGCAGGATTCAGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATAAAAGTGAATCAGAGTTAGTCAATCAAATAATAGAACAGTTAATAAACAAGGAAAAGGTCTACTTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTTAGTACTGGAATTAGAAAAGTACTATTTTTAGATGGAATAGATAAGGCCCAAGAAGAACATGAGAAATACCACAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTGGTAGCAAGAGAAATAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGAGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAGCTAGATTGTACACATTTAGAAGGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAAACAGGACAGGAAACAGCATACTTTCTCTTAAAATTAGCAGGAAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGTAATTTCACTAGTACTACAGTTAAGGCCGCCTGTTGGTGGGCGGGGATCAAGCAGGAGTTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGACCAGGCTGAACATCTTAAAACAGCAGTACAAATGGCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTGATACAAGACAATAGTGACATAAAAGTAGTGCCAAGAAGAAAAGTAAAAATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG" @@ -433,7 +433,7 @@ "subtype_start": 5040, "subtype_end": 5619, "orientation": "forward", - "distance": 0.21875, + "distance": 0.2608047690014903, "protein": "MENRWQVMIVWQVDRMRIRTWKSLVKHHMYVSGKAKGWFYRHHYESHHPRISSEVHVPLGDARLVITTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPNLADQLIHLYYFDCFSESAIRSAILGHIVSPSCEYQAGHNKVGSLQYLALAALITPKRRKPPLPSVAKLTEDRWNKPQKTKGHRGSHIRNGH", "aminoacids": "MENRWQVMIVWQVDRMRIRTWKSLVKHHMYVSGKAKGWFYRHHYESHHPRISSEVHVPLGDARLVITTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPNLADQLIHLYYFDCFSESAIRSAILGHIVSPSCEYQAGHNKVGSLQYLALAALITPKRRKPPLPSVAKLTEDRWNKPQKTKGHRGSHIRNGH*", "nucleotides": "ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAAAAGTTTAGTAAAACACCATATGTATGTTTCAGGGAAAGCTAAGGGATGGTTTTATAGACATCACTATGAAAGCCATCATCCAAGAATAAGTTCAGAAGTACATGTCCCACTAGGGGATGCTAGATTGGTAATAACAACATATTGGGGTCTGCATACAGGAGAAAGAGATTGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGGAAAAGGAGATATAGCACACAAGTAGACCCCAACCTAGCAGACCAACTGATTCATCTGTATTACTTTGATTGTTTTTCAGAATCTGCTATAAGAAGTGCCATATTAGGACATATAGTTAGTCCTAGTTGTGAATATCAAGCAGGACATAACAAGGTAGGATCTCTACAGTACTTGGCATTAGCAGCATTAATAACACCAAAAAGGAGAAAGCCCCCTTTGCCTAGTGTTGCAAAGCTGACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCACCGAGGGAGCCATATCAGGAATGGACACTAG" @@ -445,7 +445,7 @@ "subtype_start": 5558, "subtype_end": 5850, "orientation": "forward", - "distance": 0.44358974358974423, + "distance": 0.4170684667309551, "protein": "MEQAPEDQGPPREPYQEWTLELLEELKNEAVRHFPRMWLHGLGQHIYDTYGDTWTGVEAIIRILQQLLFIHFRIGCQHSRIGIIRQRRTRNGANRS", "aminoacids": "MEQAPEDQGPPREPYQEWTLELLEELKNEAVRHFPRMWLHGLGQHIYDTYGDTWTGVEAIIRILQQLLFIHFRIGCQHSRIGIIRQRRTRNGANRS*T", "nucleotides": "ATGGAACAAGCCCCAGAAGACCAAGGGCCACCGAGGGAGCCATATCAGGAATGGACACTAGAGCTTTTAGAGGAGCTTAAGAATGAAGCTGTTAGACATTTTCCTAGGATGTGGCTCCATGGCTTAGGGCAACATATCTATGACACTTATGGGGATACTTGGACAGGAGTGGAAGCCATAATAAGAATTCTGCAACAACTGCTGTTCATTCATTTCAGGATTGGGTGTCAACATAGCAGAATAGGCATTATTCGCCAGAGGAGAACAAGAAATGGAGCCAATAGATCCTAGACT" @@ -457,7 +457,7 @@ "subtype_start": 5830, "subtype_end": 6045, "orientation": "forward", - "distance": 0.29166666666666674, + "distance": 0.31992687385740404, "protein": "MEPIDPRLEPWKHPGSQPKTACTSCYCKKCCFHCQVCFMTKALGISYGRKKRRQRRRASQDSQTHQVSLSKQ", "aminoacids": "MEPIDPRLEPWKHPGSQPKTACTSCYCKKCCFHCQVCFMTKALGISYGRKKRRQRRRASQDSQTHQVSLSKQ*", "nucleotides": "ATGGAGCCAATAGATCCTAGACTAGAGCCCTGGAAGCATCCAGGAAGCCAGCCTAAGACTGCTTGTACCTCTTGCTATTGTAAAAAGTGTTGCTTTCATTGTCAAGTCTGTTTCATGACAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTTCTCAAGACAGTCAGACTCATCAAGTTTCTCTATCAAAGCAGTAA" @@ -469,7 +469,7 @@ "subtype_start": 5969, "subtype_end": 6045, "orientation": "forward", - "distance": 0.5192307692307692, + "distance": 0.4557731262660365, "protein": "MAGRSGDSDEELLKTVRLIKFLYQSSK", "aminoacids": "MAGRSGDSDEELLKTVRLIKFLYQSSK", "nucleotides": "ATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTTCTCAAGACAGTCAGACTCATCAAGTTTCTCTATCAAAGCAGTAAG" @@ -481,7 +481,7 @@ "subtype_start": 6061, "subtype_end": 6310, "orientation": "forward", - "distance": 0.5804878048780489, + "distance": 0.48354327509142636, "protein": "MNSLQISAIVAIVVAIILAIVVWSIVFIEYRKILRQRKIDRLIDRIRERAEDSGNESEGDQEELSTALMEMGHHAPWDVDDL", "aminoacids": "MNSLQISAIVAIVVAIILAIVVWSIVFIEYRKILRQRKIDRLIDRIRERAEDSGNESEGDQEELSTALMEMGHHAPWDVDDL*", "nucleotides": "ATGAACTCTTTACAAATATCAGCAATAGTAGCAATAGTAGTAGCAATAATACTAGCAATAGTTGTGTGGTCTATAGTATTCATAGAATATAGGAAAATATTAAGACAAAGAAAAATAGATAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGGGATCAGGAAGAACTATCAACAGCACTTATGGAGATGGGGCACCATGCTCCTTGGGATGTTGATGATCTGTAG" @@ -493,7 +493,7 @@ "subtype_start": 6224, "subtype_end": 8795, "orientation": "forward", - "distance": 0.4975467289719626, + "distance": 0.4452133553553136, "protein": "MRVKGIRKNYQQHLWRWGTMLLGMLMICSAAGNLWVTVYYGVPVWKEATTTLFCASDAKAYGTEVHNVWATHACVPTDPNPQEVRLENVTENFNMWRNPMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDLGQESTNNNITGSIEKGEMKNCSFNISSSKGSKGHKEYASFYKLDVVPIGNNKTNGNYSSYRLISCNTSVITQACPKVSFEPIPIHFCAPAGYAILKCNDKQFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSANFTDNAKTIIVQLNQSVEITCTRPGNNTIRGVHMGPGKAFYAGAITGDIRKAHCIINKAKWNSTLRLVVAKLSEQFRNKTINFTQPSGGDPEIVTHSFNCGGEFFYCNTTKLFNSTWNATHMINGTWNDTEGNITLPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGGKTNESNTTEIFRPGGGDMRDNWRSELYKYKVVRIEPLGVAPTKAKRRVVQREKRAVGIGALFLGFLGAAGSTMGATSMALTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGVKQLQARVLALERYLKDQQLLGFWGCSGKLICTTDVPWNASWSNKSLGQIWENMTWMEWEREIDNYTSLIYTLITESQIQQEQNEKELLELDKWANLWNWFGITNWLWYIKIFIMIVGGLVGLRIVFAVLSIVNRVRQGYSPLSFQTRFPAPRGPDRPEGIEEEGGERDRDRSAPLVKGFLALIWVDLRSLCLFSYHRLRDLLLIITRIVELLGRRGWEVLKYLWSLLQYWTQELKNSAVSLLNATAIAVAEGTDRIIEVLQRVFRAILHIPTRIRQGFERALL", "aminoacids": "MRVKGIRKNYQQHLWRWGTMLLGMLMICSAAGNLWVTVYYGVPVWKEATTTLFCASDAKAYGTEVHNVWATHACVPTDPNPQEVRLENVTENFNMWRNPMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDLGQESTNNNITGSIEKGEMKNCSFNISSSKGSKGHKEYASFYKLDVVPIGNNKTNGNYSSYRLISCNTSVITQACPKVSFEPIPIHFCAPAGYAILKCNDKQFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSANFTDNAKTIIVQLNQSVEITCTRPGNNTIRGVHMGPGKAFYAGAITGDIRKAHCIINKAKWNSTLRLVVAKLSEQFRNKTINFTQPSGGDPEIVTHSFNCGGEFFYCNTTKLFNSTWNATHMINGTWNDTEGNITLPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGGKTNESNTTEIFRPGGGDMRDNWRSELYKYKVVRIEPLGVAPTKAKRRVVQREKRAVGIGALFLGFLGAAGSTMGATSMALTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGVKQLQARVLALERYLKDQQLLGFWGCSGKLICTTDVPWNASWSNKSLGQIWENMTWMEWEREIDNYTSLIYTLITESQIQQEQNEKELLELDKWANLWNWFGITNWLWYIKIFIMIVGGLVGLRIVFAVLSIVNRVRQGYSPLSFQTRFPAPRGPDRPEGIEEEGGERDRDRSAPLVKGFLALIWVDLRSLCLFSYHRLRDLLLIITRIVELLGRRGWEVLKYLWSLLQYWTQELKNSAVSLLNATAIAVAEGTDRIIEVLQRVFRAILHIPTRIRQGFERALL*", "nucleotides": "ATGAGAGTGAAGGGGATCAGGAAGAACTATCAACAGCACTTATGGAGATGGGGCACCATGCTCCTTGGGATGTTGATGATCTGTAGTGCTGCAGGCAATTTGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAAAGAAGCAACCACCACTCTATTTTGTGCATCAGATGCTAAAGCATATGGTACAGAGGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTGAGATTGGAAAATGTGACAGAAAATTTTAATATGTGGAGAAATCCAATGGTAGAACAGATGCATGAGGATATAATTAGTTTATGGGATCAAAGCCTAAAGCCATGTGTAAAGTTGACCCCACTCTGTGTCACTTTAAATTGCACTGATTTGGGACAGGAGAGTACCAATAATAATATCACAGGAAGTATAGAGAAAGGAGAAATGAAAAACTGCTCTTTCAATATCTCCTCAAGCAAAGGAAGTAAGGGGCATAAAGAATATGCATCTTTTTATAAACTTGATGTAGTACCAATAGGTAATAATAAGACTAATGGTAATTATTCTAGCTATAGGTTGATAAGTTGTAATACCTCAGTCATTACACAGGCCTGTCCAAAAGTATCATTTGAGCCAATTCCCATACATTTTTGTGCCCCGGCTGGGTATGCGATTCTAAAGTGTAATGATAAACAATTCAATGGAACAGGACCATGTACAAATGTCAGCACAGTACAGTGTACACATGGAATTAGGCCAGTAGTATCAACTCAACTGCTGTTAAATGGTAGTCTAGCAGAAGAAGAGGTAGTAATTAGATCTGCCAATTTCACGGACAATGCTAAAACCATAATAGTACAGCTGAACCAATCTGTAGAAATTACTTGTACAAGACCCGGTAACAATACAATAAGAGGGGTTCACATGGGACCAGGGAAGGCATTTTATGCAGGAGCAATAACAGGAGATATAAGAAAAGCACATTGTATCATTAATAAAGCAAAATGGAACAGTACTTTAAGACTGGTAGTTGCAAAATTAAGTGAGCAATTTAGGAATAAAACAATAAACTTTACTCAACCCTCAGGAGGGGACCCAGAAATTGTAACACACAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAATACAACAAAACTGTTTAATAGTACTTGGAATGCAACACACATGATTAATGGTACTTGGAATGATACTGAGGGAAATATCACCCTCCCATGCAGAATAAAACAAATTATAAACATGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCATCAGAGGACAAATTAGATGTTCATCCAATATTACAGGGTTGCTATTAACAAGAGATGGTGGTAAGACTAACGAGAGCAACACCACCGAGATCTTTAGACCTGGAGGAGGAGATATGAGAGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAGAATTGAACCATTAGGGGTAGCACCCACCAAGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTCTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAACGTCGATGGCGTTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAACAGCAGAACAATTTGCTGAGAGCTATTGAGGCGCAACAACATTTGTTGCAACTCACAGTCTGGGGCGTCAAGCAGCTCCAGGCAAGAGTCCTGGCTCTGGAAAGATACCTAAAGGATCAACAGCTCCTGGGGTTTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGATGTGCCTTGGAATGCTAGTTGGAGTAATAAATCTCTGGGACAAATTTGGGAGAACATGACCTGGATGGAGTGGGAAAGAGAAATTGATAATTACACAAGCTTAATATACACTTTAATTACAGAATCGCAGATCCAACAAGAACAGAATGAAAAAGAATTGTTGGAATTGGATAAATGGGCAAATTTGTGGAATTGGTTTGGCATAACAAACTGGCTGTGGTACATAAAAATATTTATAATGATAGTAGGAGGCTTAGTAGGTTTAAGAATAGTTTTTGCTGTACTTTCTATAGTGAATAGAGTTAGGCAGGGATACTCACCATTATCGTTTCAGACCCGCTTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGCTCCATTAGTGAAAGGATTCTTAGCACTTATCTGGGTCGATCTACGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATAATAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGTCCTCAAATACTTGTGGAGTCTCCTACAGTATTGGACACAGGAACTAAAGAATAGTGCTGTTAGCTTGCTCAATGCCACAGCCATAGCAGTAGCTGAGGGGACAGATAGGATTATAGAAGTATTACAAAGAGTTTTTAGAGCTATCCTCCATATCCCTACAAGAATAAGACAGGGCTTTGAAAGGGCTTTGCTATAA" @@ -505,7 +505,7 @@ "subtype_start": 8376, "subtype_end": 8469, "orientation": "forward", - "distance": 0.4866666666666659, + "distance": 0.439759036144578, "protein": "RPASQPRGDPTGPKESKKKVERETETDPLH", "aminoacids": "RPASQPRGDPTGPKESKKKVERETETDPLH**", "nucleotides": "AGACCCGCTTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGCTCCATTAGTGA" @@ -517,7 +517,7 @@ "subtype_start": 8377, "subtype_end": 8653, "orientation": "forward", - "distance": 0.2637362637362637, + "distance": 0.29843322556577967, "protein": "DPLPSPEGTRQARRNRRRRWRERQRQIRSISERILSTYLGRSTEPVPLQLPPLERLTLDNNEDCGTSGTQGVGSPQILVESPTVLDTGTKE", "aminoacids": "DPLPSPEGTRQARRNRRRRWRERQRQIRSISERILSTYLGRSTEPVPLQLPPLERLTLDNNEDCGTSGTQGVGSPQILVESPTVLDTGTKE*", "nucleotides": "GACCCGCTTCCCAGCCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCGCTCCATTAGTGAAAGGATTCTTAGCACTTATCTGGGTCGATCTACGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATAATAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGTCCTCAAATACTTGTGGAGTCTCCTACAGTATTGGACACAGGAACTAAAGAATAG" @@ -529,7 +529,7 @@ "subtype_start": 8796, "subtype_end": 9417, "orientation": "forward", - "distance": 0.3878048780487735, + "distance": 0.38480154888673335, "protein": "MGGKWSKSSLVGWPNVRERMRRAEPAADGVGAVSRDLERHGAITSSNTATNNADCAWLEAQKEEEVGFPVTPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIHSQKRQDILDLWIYHTQGYFPDWQNYTPGPGVRYPLTFGWCFKLVPVEPTDRENDRLLHPASLQGMEDPEGEVLEWRFDSRLAFHHMARELHPEYYKNC", "aminoacids": "MGGKWSKSSLVGWPNVRERMRRAEPAADGVGAVSRDLERHGAITSSNTATNNADCAWLEAQKEEEVGFPVTPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIHSQKRQDILDLWIYHTQGYFPDWQNYTPGPGVRYPLTFGWCFKLVPVEPTDRENDRLLHPASLQGMEDPEGEVLEWRFDSRLAFHHMARELHPEYYKNC*HRAFYKGLSAGDFPGEAWPGRGRGVASPQMLHISSCFCLYWVSLVRPDLSLGALWLTREPTA*", "nucleotides": "ATGGGGGGCAAGTGGTCAAAAAGTAGTTTGGTTGGATGGCCTAATGTAAGGGAAAGAATGAGACGAGCTGAGCCAGCAGCAGATGGGGTGGGAGCAGTATCTCGAGACTTGGAAAGACATGGAGCAATCACAAGTAGTAATACAGCAACTAACAATGCTGATTGTGCCTGGCTAGAAGCACAAAAGGAGGAGGAGGTGGGTTTTCCAGTCACACCTCAGGTACCTTTAAGACCAATGACTTACAAGGCAGCTGTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCACTCCCAAAAAAGACAAGATATTCTTGATCTATGGATCTACCACACACAAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGGTCAGATATCCACTGACCTTTGGATGGTGCTTCAAGCTAGTACCAGTTGAGCCCACTGACAGAGAGAATGACAGATTGCTGCACCCTGCAAGCCTGCAGGGGATGGAAGACCCGGAGGGAGAAGTGTTAGAGTGGAGGTTTGACAGCCGCCTGGCATTTCATCACATGGCCCGAGAGCTGCATCCGGAGTACTACAAGAACTGCTGACATCGAGCTTTCTACAAGGGACTTTCCGCTGGGGACTTTCCAGGGGAGGCGTGGCCTGGGCGGGGCAGGGGAGTGGCGAGCCCTCAGATGCTGCATATAAGCAGCTGCTTCTGCCTGTACTGGGTCTCTCTGGTTAGACCAGATCTGAGCCTGGGAGCTCTCTGGCTGACTAGGGAACCCACTGCTTAA" @@ -543,7 +543,7 @@ "subtype_start": 789, "subtype_end": 2292, "orientation": "forward", - "distance": 0.8911999999999998, + "distance": 0.5897300158814187, "protein": "MAYSPVAAPRLLPCALQQATPQDLNTMLNTVGGHQAAMQMLKEVINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQATGTANILMQRGNFRNQRKPVKCFNCGKEGHIAKNCRAPRKKGCWKCGREGHQMKDCTERQANFLGKIWPSHKGRPGNFPQSRPEIPQSRPEPTAPPAPPEESFRFGEATTPSQKQETMDKELYPPLTSLRSLFGNDPSSQ", "aminoacids": "MYTIEGGYCII**SKFF*SCLKGWL*LFQYLFTAS*CF*QARINCESF*FPACPYYMF*SIFFLSPWP*PNFLPSI*FSPAQY*RSRTHLSPSSLR*SKMAYSPVAAPRLLPCALQQATPQDLNTMLNTVGGHQAAMQMLKEVINEEAAEWDRLHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTHNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQATGTANILMQRGNFRNQRKPVKCFNCGKEGHIAKNCRAPRKKGCWKCGREGHQMKDCTERQANFLGKIWPSHKGRPGNFPQSRPEIPQSRPEPTAPPAPPEESFRFGEATTPSQKQETMDKELYPPLTSLRSLFGNDPSSQ*", "nucleotides": "ATGTACACAATAGAGGGTGGCTACTGTATTATATAATGATCTAAGTTCTTCTGATCCTGTCTGAAGGGATGGTTGTAGCTGTTCCAATATCTGTTTACAGCCTCCTGATGTTTCTAACAGGCCAGGATTAACTGCGAATCGTTCTAGTTCCCTGCTTGCCCATACTATATGTTTTAATCTATATTTTTTCTTTCCCCCTGGCCTTAACCGAATTTTCTCCCATCTATCTAATTCTCCCCCGCTCAATACTGACGCTCTCGCACCCATCTCTCTCCTTCTAGCCTCCGCTAGTCAAAAATGGCGTACTCACCAGTCGCCGCCCCTCGCCTCTTGCCGTGCGCGCTTCAGCAAGCCACCCCACAAGATTTGAACACTATGCTAAACACAGTGGGTGGACACCAAGCAGCTATGCAAATGTTAAAAGAGGTCATCAATGAGGAAGCTGCAGAATGGGATAGATTACATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGGATGGATGACACATAATCCACCTATCCCAGTAGGAGAGATTTATAAAAGATGGATAATTCTGGGACTAAATAAAATAGTAAGAATGTATAGCCCTACCAGCATTTTGGACATAAAGCAAGGGCCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAAAACTTTAAGAGCCGAGCAAGCTACACAGGAAGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAGAATGCAAATCCAGATTGTAAAACTATTTTAAAAGCATTAGGACCAGCAGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGGGGACCCGGCCATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGCAACAGGTACAGCCAACATACTGATGCAGAGAGGCAATTTTAGGAACCAAAGAAAGCCTGTTAAATGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAGGGAAGGACACCAAATGAAGGATTGCACTGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCTCACAAGGGAAGGCCAGGGAACTTTCCTCAGAGCCGACCAGAAATTCCTCAGAGCAGACCAGAGCCAACAGCCCCACCAGCCCCTCCAGAAGAGAGCTTCAGGTTTGGGGAAGCAACAACTCCCTCTCAGAAGCAGGAGACAATGGACAAGGAGCTGTATCCTCCTCTAACTTCCCTCAGATCACTCTTTGGCAACGACCCATCGTCACAATAA" @@ -555,7 +555,7 @@ "subtype_start": 2084, "subtype_end": 5096, "orientation": "forward", - "distance": 0.2169491525423728, + "distance": 0.259214256784123, "protein": "FFRENLAFSQGKARELSSEPTRNSSEQTRANSPTSPSRRELQVWGSNNSLSEAGDNGQGAVSSSNFPQITLWQRPIVTIKIGGQLKEALLDTGADDTVLEDIDLPGKWKPKMIGGIGGFIKVRQYEQVPIEISGHKAIGTVLVGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDGTKWRKLVDFRELNKRTQEFWEIQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKTNPDIVIYQYMDDLYVGSDLEIGQHRTKVEELRQHLMRWGFTTPDKKHQKEPPFLWMGYELHPNKWTVQPIVLPEKESWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGTKALTEVVPLTEEAELELAENREILKDPVHGAYYDPAKDLIAELQKQGEGQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKISTESIVIWGRTPKFRLPIQKETWETWWTDYWQATWIPEWEFVNTPPLVKLWYQLEKEPIIGAETFYVDGAANRDNKSGKAGYVTDRGRQKVVTINDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIEKAQEDHEKYHSNWRTMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEEKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGRNFTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATEIQTKELQKQITKIPNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED", "aminoacids": "FFRENLAFSQGKARELSSEPTRNSSEQTRANSPTSPSRRELQVWGSNNSLSEAGDNGQGAVSSSNFPQITLWQRPIVTIKIGGQLKEALLDTGADDTVLEDIDLPGKWKPKMIGGIGGFIKVRQYEQVPIEISGHKAIGTVLVGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDGTKWRKLVDFRELNKRTQEFWEIQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKTNPDIVIYQYMDDLYVGSDLEIGQHRTKVEELRQHLMRWGFTTPDKKHQKEPPFLWMGYELHPNKWTVQPIVLPEKESWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGTKALTEVVPLTEEAELELAENREILKDPVHGAYYDPAKDLIAELQKQGEGQWTYQIYQEPFKNLKTGKYARTRGAHTNDVKQLTEAVQKISTESIVIWGRTPKFRLPIQKETWETWWTDYWQATWIPEWEFVNTPPLVKLWYQLEKEPIIGAETFYVDGAANRDNKSGKAGYVTDRGRQKVVTINDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIEKAQEDHEKYHSNWRTMASDFNLPPIVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEEKIILVAVHVASGYIEAEVIPAETGQETAYFILKLAGRWPVKTIHTDNGRNFTSNTVKAACWWAGIKQEFGIPYNPQSQGVVESMNNELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATEIQTKELQKQITKIPNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED*", "nucleotides": "TTTTTTAGGGAAAATCTGGCCTTCTCACAAGGGAAGGCCAGGGAACTTTCCTCAGAGCCGACCAGAAATTCCTCAGAGCAGACCAGAGCCAACAGCCCCACCAGCCCCTCCAGAAGAGAGCTTCAGGTTTGGGGAAGCAACAACTCCCTCTCAGAAGCAGGAGACAATGGACAAGGAGCTGTATCCTCCTCTAACTTCCCTCAGATCACTCTTTGGCAACGACCCATCGTCACAATAAAGATAGGGGGGCAACTAAAGGAAGCTTTATTAGATACAGGAGCAGATGATACAGTATTAGAGGACATAGATTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAATATGAACAGGTACCCATAGAAATTAGCGGACACAAAGCTATAGGTACAGTGTTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGCTTGGTTGCACTCTAAATTTTCCCATCAGCCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGACGGCCCAAAGGTTAAACAATGGCCATTAACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTGTTTGCCATAAAGAAAAAAGATGGCACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGAATTCTGGGAAATTCAATTAGGTATACCACATCCTGCAGGGCTAAAAAAGAAAAAATCAGTCACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATAAAGACTTCAGGAAATATACTGCATTTACCATACCTAGTATAAACAATGAGACACCAGGGATTAGATATCAGTATAATGTGCTTCCACAAGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAGATCCTGGAGCCTTTTAGAAAGACAAATCCAGACATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAACATAGAACAAAAGTAGAGGAACTGAGGCAACATCTGATGAGGTGGGGATTTACCACACCAGACAAAAAGCACCAGAAAGAACCCCCATTCCTTTGGATGGGGTATGAACTCCATCCTAATAAATGGACAGTACAGCCTATAGTACTGCCAGAAAAGGAAAGTTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTAAATTGGGCAAGTCAGATTTATGCAGGGATTAAAGTGAAGCAATTATGTAAGCTCCTTAGGGGAACCAAAGCATTAACAGAAGTAGTACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAGATTCTAAAAGATCCGGTACATGGAGCATATTATGACCCAGCAAAGGACTTAATAGCAGAACTACAGAAGCAGGGAGAAGGTCAGTGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGGAAATATGCAAGAACGAGGGGTGCCCATACTAATGATGTAAAGCAATTAACAGAGGCAGTGCAAAAAATATCCACAGAAAGTATAGTAATATGGGGAAGGACTCCTAAATTTAGATTACCCATACAAAAAGAAACATGGGAAACATGGTGGACAGATTATTGGCAAGCCACCTGGATCCCTGAGTGGGAGTTTGTCAACACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAAAAAGAACCCATAATAGGAGCAGAAACCTTCTATGTAGATGGGGCAGCTAATAGGGATAATAAATCAGGAAAAGCAGGATATGTTACTGATAGAGGAAGACAAAAGGTTGTCACCATAAATGACACAACAAATCAGAAAACTGAATTACAAGCCATTCATCTAGCCTTGCAGGATTCGGGGCTAGAAGTAAACATAGTAACAGACTCACAGTATGCATTAGGGATCATTCAAGCACAACCAGATAAAAGTGAATCAGAGTTAGTCAGTCAAATAATAGAACAGTTAATAAAAAAGGAAAAGGTCTACCTGGCATGGGTGCCAGCCCACAAAGGAATTGGAGGAAATGAACAGGTAGATAAACTAGTCAGTGCTGGAATCAGGAAAGTACTATTTTTAGATGGAATAGAAAAAGCCCAAGAAGACCATGAGAAATATCACAGTAATTGGAGAACAATGGCTAGTGATTTTAACCTACCACCTATAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGAGAAGCTATGCATGGGCAAGTAGACTGTAGTCCAGGTATATGGCAGCTAGATTGTACACATTTAGAAGAAAAAATTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTGATTCCAGCAGAGACAGGGCAAGAAACAGCATACTTTATTTTAAAACTAGCAGGAAGATGGCCAGTAAAAACAATACATACAGACAATGGCCGCAATTTCACCAGTAATACAGTGAAGGCCGCCTGTTGGTGGGCGGGAATCAAGCAGGAATTTGGTATTCCCTACAATCCCCAGAGTCAAGGAGTAGTAGAATCTATGAATAATGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGATACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACAGAAATACAGACTAAAGAATTACAAAAACAAATTACAAAAATTCCAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAACAGTGACATAAAAGTAGTGCCAAGAAGAAAAGCAAAAATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAG" @@ -567,7 +567,7 @@ "subtype_start": 5040, "subtype_end": 5619, "orientation": "forward", - "distance": 0.34375, + "distance": 0.3566796368352788, "protein": "MENRWQVMIVWQVDRMRIRTWKSLVKYHMYISKKAKKWAYRHHYETTHPRISSEVHIPLGDDRLVITTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPDLADHLIHVHYFDCFSESAIRNAILGHRVSPRCEYQAGHNKVGSLQYLALTAVITPKKIKPPLPSVKKLTEDRWNKPQKTKGHRESHTMNGH", "aminoacids": "MENRWQVMIVWQVDRMRIRTWKSLVKYHMYISKKAKKWAYRHHYETTHPRISSEVHIPLGDDRLVITTYWGLHTGERDWHLGQGVSIEWRKRRYSTQVDPDLADHLIHVHYFDCFSESAIRNAILGHRVSPRCEYQAGHNKVGSLQYLALTAVITPKKIKPPLPSVKKLTEDRWNKPQKTKGHRESHTMNGH*SF*", "nucleotides": "ATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAAAAGTTTAGTAAAATACCATATGTATATTTCAAAGAAAGCCAAAAAATGGGCTTATAGACACCATTACGAAACCACTCATCCAAGAATAAGTTCAGAAGTACATATCCCACTAGGGGATGATAGATTGGTAATAACAACATATTGGGGTCTGCATACAGGAGAGAGAGACTGGCATTTGGGCCAGGGAGTCTCCATAGAATGGAGAAAAAGGAGATATAGCACACAAGTAGACCCTGACTTAGCAGACCATCTAATTCATGTGCATTATTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACATAGAGTTAGCCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGATCTCTACAATACTTGGCACTAACAGCAGTAATAACACCAAAGAAGATAAAGCCACCTTTGCCTAGTGTAAAGAAACTGACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGAGAGCCATACAATGAATGGACACTAGAGCTTTTAG" @@ -579,7 +579,7 @@ "subtype_start": 5558, "subtype_end": 5850, "orientation": "forward", - "distance": 0.5192307692307698, + "distance": 0.4557731262660367, "protein": "MEQAPEDQGPQREPYNEWTLELLEELKREAVRHFPRPWLQDLGQYIYETYGDTWTGVEAIIRILQQMLFIHFRIGCHHSRIGIVLQRRARNGASRS", "aminoacids": "MEQAPEDQGPQREPYNEWTLELLEELKREAVRHFPRPWLQDLGQYIYETYGDTWTGVEAIIRILQQMLFIHFRIGCHHSRIGIVLQRRARNGASRS*T", "nucleotides": "ATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGAGAGCCATACAATGAATGGACACTAGAGCTTTTAGAAGAGCTTAAGAGAGAAGCTGTTAGACATTTCCCTAGACCATGGCTACAAGACCTAGGACAATATATCTATGAAACTTATGGGGATACTTGGACAGGAGTGGAAGCCATAATAAGAATTCTGCAACAAATGCTGTTTATTCATTTCAGAATTGGGTGTCACCATAGCAGAATAGGCATTGTTCTGCAAAGAAGAGCAAGAAATGGAGCCAGTAGATCATAGACT" @@ -591,7 +591,7 @@ "subtype_start": 5830, "subtype_end": 6045, "orientation": "forward", - "distance": 0.45833333333333326, + "distance": 0.42503863987635226, "protein": "MEPVDHRLEPWKHPGSQPRTPCTNCYCKKCCFHCQVCFIQKALGISYGRKKRRQRRRSPQDSQTHQVPLPKQ", "aminoacids": "MEPVDHRLEPWKHPGSQPRTPCTNCYCKKCCFHCQVCFIQKALGISYGRKKRRQRRRSPQDSQTHQVPLPKQ", "nucleotides": "ATGGAGCCAGTAGATCATAGACTAGAGCCCTGGAAGCATCCAGGAAGTCAGCCTAGGACTCCTTGTACCAATTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTGTGTTTTATACAAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGAGACGAAGATCTCCTCAAGACAGTCAGACTCATCAAGTTCCTCTACCAAAGCAG" @@ -603,7 +603,7 @@ "subtype_start": 5969, "subtype_end": 6045, "orientation": "forward", - "distance": 0.6923076923076923, + "distance": 0.5275498241500586, "protein": "MAGRSGDRDEDLLKTVRLIKFLYQSS", "aminoacids": "MAGRSGDRDEDLLKTVRLIKFLYQSS", "nucleotides": "ATGGCAGGAAGAAGCGGAGACAGAGACGAAGATCTCCTCAAGACAGTCAGACTCATCAAGTTCCTCTACCAAAGCAGT" @@ -615,7 +615,7 @@ "subtype_start": 6061, "subtype_end": 6310, "orientation": "forward", - "distance": 0.6560975609756099, + "distance": 0.5141437308868502, "protein": "MQSLEILAIVALVVAAIIAIVVWTIVGIEYRKILRQRKIDKIINRIRERAEDSGNESEGDQEELSALVVEMGHDAPWDVDDL", "aminoacids": "MQSLEILAIVALVVAAIIAIVVWTIVGIEYRKILRQRKIDKIINRIRERAEDSGNESEGDQEELSALVVEMGHDAPWDVDDL*", "nucleotides": "ATGCAATCTTTAGAGATATTAGCAATAGTAGCATTAGTAGTAGCAGCAATAATAGCAATAGTTGTGTGGACCATAGTAGGCATAGAATATAGGAAAATATTAAGACAAAGAAAAATAGATAAAATAATTAATAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGCGAAGGGGATCAGGAAGAATTGTCAGCACTTGTGGTGGAAATGGGGCACGATGCTCCTTGGGATGTTGATGATCTGTAG" @@ -627,7 +627,7 @@ "subtype_start": 6224, "subtype_end": 8795, "orientation": "forward", - "distance": 0.6022196261682247, + "distance": 0.49272619525530026, "protein": "MRAKGIRKNCQHLWWKWGTMLLGMLMICSAAENLWVTVYYGVPVWRDANTTLFCASDAKAYDTEVHNVWATHACVPTDPNPHEVELKNVTENFNMWKNNMVDQMHEDIINLWDQSLKPCAKLTPLCVTLNCTDLRNDTVGNQTNLTETNTIQGREMTNCSFNITTEIRDKVRKEHALFYKLDVMPIDRDNTSYTLINCNTSVITQACPKVTFEPIPIHYCTPAGFAILKCKDEMFNGTGPCKNVSTVQCTHGIRPVVSTQLLLNGSLAEKEIVLRSENFTDNGKNIIVQLNRSIVINCTRPNNNTRKSISVAGRAIYATGQIIGDIRQAHCNISETDWNDTLSKIVEKLREKFGKDKTIIFNQSSGGDMEIETHSFNCGGEFFYCNTTRLFNSTWSVNGTSINGTKNITLPCRIKQIINRWQEVGKAMYAPPISGIIRCSSNITGLILTRDGGTNNSTEETETFRPGGGNMKDNWRSELYKYKVVKIEPLGVAPTKAQRRVVQREKRAIGALGAMFLGFLGAAGSTMGAASLTLTVQARQLLSGIVQQQNNLLRAIEAQQHMLQLTVWGIKQLQARVLSVERYLQDQQLLGIWGCSGKLICTTTVPWNTSWSNKSYDTIWDNMTWMQWDREIQNYTGKIYNLLEESQIQQEKNEKELLELDQWANLWNWFSITKWLWYIKIFIMIVGGLVGLKIIFAVFSIVNRVRQGYSPLSLQTLLPTPRGPDRPEGIEEEGGERDRGRSGRLVTGFLPLIWDDLRSLCLFSYHHLRDLLLIVLRTVQVLGHRGWEILKYWWSLLQYWIQELKNSAVSLLNTIAIAVAEGTDRVIEVGQRIGRAFLHIPRRIRQGLERALQ", "aminoacids": "MRAKGIRKNCQHLWWKWGTMLLGMLMICSAAENLWVTVYYGVPVWRDANTTLFCASDAKAYDTEVHNVWATHACVPTDPNPHEVELKNVTENFNMWKNNMVDQMHEDIINLWDQSLKPCAKLTPLCVTLNCTDLRNDTVGNQTNLTETNTIQGREMTNCSFNITTEIRDKVRKEHALFYKLDVMPIDRDNTSYTLINCNTSVITQACPKVTFEPIPIHYCTPAGFAILKCKDEMFNGTGPCKNVSTVQCTHGIRPVVSTQLLLNGSLAEKEIVLRSENFTDNGKNIIVQLNRSIVINCTRPNNNTRKSISVAGRAIYATGQIIGDIRQAHCNISETDWNDTLSKIVEKLREKFGKDKTIIFNQSSGGDMEIETHSFNCGGEFFYCNTTRLFNSTWSVNGTSINGTKNITLPCRIKQIINRWQEVGKAMYAPPISGIIRCSSNITGLILTRDGGTNNSTEETETFRPGGGNMKDNWRSELYKYKVVKIEPLGVAPTKAQRRVVQREKRAIGALGAMFLGFLGAAGSTMGAASLTLTVQARQLLSGIVQQQNNLLRAIEAQQHMLQLTVWGIKQLQARVLSVERYLQDQQLLGIWGCSGKLICTTTVPWNTSWSNKSYDTIWDNMTWMQWDREIQNYTGKIYNLLEESQIQQEKNEKELLELDQWANLWNWFSITKWLWYIKIFIMIVGGLVGLKIIFAVFSIVNRVRQGYSPLSLQTLLPTPRGPDRPEGIEEEGGERDRGRSGRLVTGFLPLIWDDLRSLCLFSYHHLRDLLLIVLRTVQVLGHRGWEILKYWWSLLQYWIQELKNSAVSLLNTIAIAVAEGTDRVIEVGQRIGRAFLHIPRRIRQGLERALQ*", "nucleotides": "ATGAGAGCGAAGGGGATCAGGAAGAATTGTCAGCACTTGTGGTGGAAATGGGGCACGATGCTCCTTGGGATGTTGATGATCTGTAGTGCTGCGGAAAATTTGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAGAGATGCAAATACCACTCTATTCTGTGCATCAGATGCTAAAGCATATGATACAGAAGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCTAACCCACATGAAGTAGAATTGAAAAATGTGACAGAAAATTTTAATATGTGGAAAAATAACATGGTGGACCAGATGCATGAGGATATAATCAATTTATGGGATCAAAGCCTAAAGCCATGTGCAAAATTGACCCCACTCTGTGTTACTTTAAATTGCACTGATTTAAGAAATGATACTGTAGGAAATCAAACAAATCTCACTGAAACTAATACAATACAGGGAAGAGAAATGACAAACTGCTCTTTCAATATCACCACAGAGATAAGAGATAAAGTGCGAAAAGAACATGCACTTTTTTATAAACTTGATGTCATGCCAATAGATAGGGATAATACAAGTTATACATTGATAAATTGCAATACCTCAGTCATTACACAGGCCTGTCCAAAGGTAACCTTTGAACCAATTCCCATACATTATTGTACTCCAGCTGGTTTTGCAATTCTAAAGTGTAAGGATGAGATGTTCAATGGAACAGGACCATGTAAGAATGTCAGCACAGTACAATGTACACATGGAATTAGACCAGTAGTGTCAACTCAACTACTGTTAAATGGTAGCCTAGCAGAAAAAGAGATAGTACTTAGATCTGAAAATTTCACAGACAATGGTAAAAATATAATAGTACAGCTAAATAGATCTATAGTAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATAAGTGTAGCAGGGAGAGCAATTTATGCAACAGGGCAGATAATAGGAGATATAAGACAAGCACATTGTAACATCAGTGAGACAGATTGGAATGACACTTTAAGCAAAATAGTTGAAAAATTAAGGGAAAAATTTGGAAAAGATAAAACAATAATCTTTAATCAATCATCAGGAGGGGACATGGAAATTGAAACGCACAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAACACAACACGACTGTTTAATAGTACTTGGAGTGTTAATGGAACTAGCATAAACGGAACTAAAAATATCACACTCCCGTGCAGAATAAAACAAATTATAAACAGGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCTATCAGTGGGATAATTAGGTGCTCATCAAATATTACAGGACTAATATTAACAAGAGATGGTGGTACAAATAATAGTACAGAGGAGACGGAGACCTTCAGACCTGGAGGGGGAAATATGAAGGACAATTGGAGAAGTGAATTATATAAATACAAAGTAGTAAAAATTGAGCCATTAGGAGTAGCACCCACCAAGGCACAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAATAGGAGCGTTAGGAGCTATGTTCCTCGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCACTGACGCTGACGGTACAAGCCAGACAATTATTGTCTGGTATAGTGCAACAGCAGAACAATCTGCTGAGGGCTATTGAGGCGCAACAGCATATGTTGCAACTCACAGTCTGGGGCATCAAACAGCTCCAGGCAAGAGTCCTGTCTGTGGAAAGATACCTACAGGATCAACAGCTCCTGGGGATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTACTGTGCCTTGGAATACTAGTTGGAGCAATAAATCTTACGATACCATCTGGGATAACATGACCTGGATGCAGTGGGACAGAGAAATTCAAAATTACACAGGGAAAATATACAACTTACTTGAGGAATCGCAAATCCAACAGGAAAAGAATGAAAAGGAATTATTAGAACTAGATCAATGGGCAAATTTGTGGAATTGGTTTAGTATAACAAAATGGCTGTGGTATATAAAAATATTCATAATGATAGTAGGAGGCTTAGTAGGTTTAAAAATAATTTTTGCTGTATTTTCTATAGTGAATAGAGTTAGGCAGGGATACTCACCATTATCATTGCAGACCCTCCTCCCAACCCCGAGGGGACCAGACAGGCCCGAAGGAATAGAAGAAGAAGGTGGAGAGAGAGACAGAGGCAGATCCGGAAGATTAGTGACTGGATTCTTACCACTCATCTGGGACGACCTGCGGAGCCTGTGCCTCTTCAGCTACCACCACTTGAGAGACTTACTCTTGATTGTGCTGAGGACTGTGCAAGTTCTGGGACACAGGGGGTGGGAGATCCTCAAGTACTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAACTAAAGAATAGTGCTGTTAGCTTGCTCAATACCATAGCTATCGCAGTAGCTGAGGGAACAGATAGGGTTATAGAGGTAGGACAAAGAATTGGCAGAGCTTTTCTCCACATACCTAGAAGGATAAGACAGGGATTAGAAAGGGCTTTGCAATAA" @@ -639,7 +639,7 @@ "subtype_start": 8376, "subtype_end": 8469, "orientation": "forward", - "distance": 0.3999999999999999, + "distance": 0.3921568627450981, "protein": "RPSSQPRGDQTGPKE", "aminoacids": "RPSSQPRGDQTGPKE*KKKVERETEADPED**", "nucleotides": "AGACCCTCCTCCCAACCCCGAGGGGACCAGACAGGCCCGAAGGAATAGAAGAAGAAGGTGGAGAGAGAGACAGAGGCAGATCCGGAAGATTAGTGA" @@ -651,7 +651,7 @@ "subtype_start": 8377, "subtype_end": 8653, "orientation": "forward", - "distance": 0.46153846153846145, + "distance": 0.4267425320056898, "protein": "DPPPNPEGTRQARRNRRRRWRERQRQIRKISDWILTTHLGRPAEPVPLQLPPLERLTLDCAEDCASSGTQGVGDPQVLVESPAVLDSGTKE", "aminoacids": "DPPPNPEGTRQARRNRRRRWRERQRQIRKISDWILTTHLGRPAEPVPLQLPPLERLTLDCAEDCASSGTQGVGDPQVLVESPAVLDSGTKE*", "nucleotides": "GACCCTCCTCCCAACCCCGAGGGGACCAGACAGGCCCGAAGGAATAGAAGAAGAAGGTGGAGAGAGAGACAGAGGCAGATCCGGAAGATTAGTGACTGGATTCTTACCACTCATCTGGGACGACCTGCGGAGCCTGTGCCTCTTCAGCTACCACCACTTGAGAGACTTACTCTTGATTGTGCTGAGGACTGTGCAAGTTCTGGGACACAGGGGGTGGGAGATCCTCAAGTACTGGTGGAGTCTCCTGCAGTATTGGATTCAGGAACTAAAGAATAG" @@ -663,7 +663,7 @@ "subtype_start": 8796, "subtype_end": 9417, "orientation": "forward", - "distance": 0.5260162601625942, + "distance": 0.4589954597048772, "protein": "MGGKWSKGCMAGWPTVRERMERIDPRPAARREQAEPAAAGVGAASRDLEKYGAITSSNTSTTNAACAWLEAQEEEEVGFPVRPQVPLRPMTYKAALDLSHFLKEKGGLEGLIWSQRRQEILDLWVYHTQGYFPDWQNYTPGPGVRFPLTFGWCFKLVPVDPDQVEKANEGENNCLLHPMSLHGMEDSEGEVLMWKFDSSLAFHHRAREQHPEYYKDC", "aminoacids": "MGGKWSKGCMAGWPTVRERMERIDPRPAARREQAEPAAAGVGAASRDLEKYGAITSSNTSTTNAACAWLEAQEEEEVGFPVRPQVPLRPMTYKAALDLSHFLKEKGGLEGLIWSQRRQEILDLWVYHTQGYFPDWQNYTPGPGVRFPLTFGWCFKLVPVDPDQVEKANEGENNCLLHPMSLHGMEDSEGEVLMWKFDSSLAFHHRAREQHPEYYKDC*H*", "nucleotides": "ATGGGTGGCAAGTGGTCAAAAGGTTGTATGGCTGGATGGCCTACTGTAAGGGAAAGAATGGAAAGAATTGATCCAAGGCCTGCTGCAAGGAGGGAACAAGCTGAGCCAGCAGCAGCTGGGGTAGGAGCAGCATCTCGAGACTTGGAAAAATATGGAGCAATCACAAGTAGCAATACATCAACTACTAATGCTGCTTGTGCCTGGCTAGAAGCACAAGAGGAGGAGGAAGTAGGCTTTCCAGTCAGACCTCAGGTACCTTTAAGACCAATGACTTACAAAGCAGCTTTGGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTGGTCCCAGAGAAGACAAGAAATCCTTGATTTGTGGGTTTACCACACACAAGGATACTTCCCTGATTGGCAAAACTACACACCAGGACCAGGGGTCAGATTTCCACTGACCTTTGGATGGTGCTTCAAGCTAGTACCAGTTGATCCAGACCAAGTAGAGAAGGCCAATGAAGGAGAGAACAACTGCTTGCTACACCCTATGAGCCTGCATGGGATGGAAGACTCAGAGGGAGAAGTGTTAATGTGGAAGTTTGACAGCAGCCTGGCGTTTCATCATAGAGCCCGAGAACAACATCCGGAGTACTACAAAGACTGCTGACACTGA"