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How to use sim3C to generate hic simulation data of different lengths according to the restriction site? #41

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xujialupaoli opened this issue Jun 27, 2024 · 0 comments

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@xujialupaoli
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Hello, thank you for providing such a useful software.
Can I use sim3C to generate hic data that is disconnected according to the restriction site? Instead of 150bp data with regular R1 and R2?
I can generate 150bp hic simulation data using the following code . Do you know how to adjust it?

sim3C --profile mycom.txt -n 5000000 -l 150 -e DpnII -m hic /home/work/jialu/tetraploid_assembly/simulate_data/strain_fq/ref_genome/hap1.fa hap1_R1.fq hap1_R2.fq

Looking forward to your reply!

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