diff --git a/README.md b/README.md index 755d535..688021b 100644 --- a/README.md +++ b/README.md @@ -1,56 +1,52 @@ cluster_roi =========== -#### pyClusterROI_test.py -# Copyright (C) 2010 R. Cameron Craddock (cameron.craddock@gmail.com) -# -# This script is a part of the pyClusterROI python toolbox for the spatially -# constrained clustering of fMRI data. It is a demonstration of how to use the -# toolbox and a regression test to make sure that the toolbox code works. -# -# For more information refer to: -# -# Craddock, R. C.; James, G. A.; Holtzheimer, P. E.; Hu, X. P. & Mayberg, H. S. -# A whole brain fMRI atlas generated via spatially constrained spectral -# clustering Human Brain Mapping, 2012, 33, 1914-1928 doi: 10.1002/hbm.21333. -# -# ARTICLE{Craddock2012, -# author = {Craddock, R C and James, G A and Holtzheimer, P E and Hu, X P and -# Mayberg, H S}, -# title = {{A whole brain fMRI atlas generated via spatially constrained -# spectral clustering}}, -# journal = {Human Brain Mapping}, -# year = {2012}, -# volume = {33}, -# pages = {1914--1928}, -# number = {8}, -# address = {Department of Neuroscience, Baylor College of Medicine, Houston, -# TX, United States}, -# pmid = {21769991}, -# } -# -# Documentation, updated source code and other information can be found at the -# NITRC web page: http://www.nitrc.org/projects/cluster_roi/ and on github at -# https://github.com/ccraddock/cluster_roi -# -# -# This program is free software: you can redistribute it and/or modify -# it under the terms of the GNU General Public License as published by -# the Free Software Foundation, either version 3 of the License, or -# (at your option) any later version. -# -# This program is distributed in the hope that it will be useful, -# but WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -# GNU General Public License for more details. -# -# You should have received a copy of the GNU General Public License -# along with this program. If not, see . -#### - - -# this scripts requires NumPy (numpy.scipy.org), SciPy (www.scipy.org), and -# NiBabel (http://niftilib.sourceforge.net/pynifti/) and the pyClusterROI -# toolbox to be installed in a directory that is accessible through PythonPath + pyClusterROI_test.py + Copyright (C) 2010 R. Cameron Craddock (cameron.craddock@gmail.com) + + This script is a part of the pyClusterROI python toolbox for the spatially + constrained clustering of fMRI data. It is a demonstration of how to use the + toolbox and a regression test to make sure that the toolbox code works. + + For more information refer to: + + Craddock, R. C.; James, G. A.; Holtzheimer, P. E.; Hu, X. P. & Mayberg, H. S. + A whole brain fMRI atlas generated via spatially constrained spectral + clustering Human Brain Mapping, 2012, 33, 1914-1928 doi: 10.1002/hbm.21333. + + ARTICLE{Craddock2012, + author = {Craddock, R C and James, G A and Holtzheimer, P E and Hu, X P and + Mayberg, H S}, + title = {{A whole brain fMRI atlas generated via spatially constrained + spectral clustering}}, + journal = {Human Brain Mapping}, + year = {2012}, + volume = {33}, + pages = {1914--1928}, + number = {8}, + address = {Department of Neuroscience, Baylor College of Medicine, Houston, + TX, United States}, + pmid = {21769991}, + } + + Documentation, updated source code and other information can be found at the + NITRC web page: http://www.nitrc.org/projects/cluster_roi/ and on github at + https://github.com/ccraddock/cluster_roi + + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + + This library requires [NumPy](http://numpy.scipy.org), [SciPy](http://www.scipy.org), and [NiBabel](http://nipy.sourceforge.net/nibabel). Please refer to pyClusterROI_test.py for detailed instructions on how to use the code. This script can be executed using [test data.](https://www.nitrc.org/frs/downloadlink.php/3719)