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demoTape

Computational demultiplexing of targeted single-cell sequencing (tapestri) data

To submit the pipeline on an HPC via slurm:

sbatch 
    -n 1 
    --cpus-per-task=1
    --time=48:00:00
    --mem-per-cpu=1024
    --output="logs/snakelog.$(date +%Y-%m-%d.%H-%M-%S).out"
    --error="logs/snakelog.$(date +%Y-%m-%d.%H-%M-%S).err"
    --open-mode=truncate
    --wrap="snakemake -s Snakefile -j 500 --configfile ../configs/multiplex_sims.yaml --profile <slurm_profile> --rerun-incomplete --drop-metadata -k"