-
Notifications
You must be signed in to change notification settings - Fork 38
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
"code" and "decode" function modifies branch lengths and bootstrap values #67
Comments
Thanks for the report. These are trivial rounding things, but yes, I
appreciate they can be annoying. For the bootstrap, an integer is
usually expected.
This should not be difficult to fix. Can you please send an example file
and the command line?
Cheers,
Cedric
On 6/9/24 18:01, kr3118 wrote:
Hi,
I am using the code/decode function to turn tip labels from accessions
to species names. When I do this however, all branch lengths get
reduced to 5 decimal places and all branch support values become 1 or
0 (if they were 1.00 before they remain 1, if they were less then
1.00, they get turned into 0). Is there a way to resolve this issue?
Many thanks
—
Reply to this email directly, view it on GitHub
<https://urldefense.com/v3/__https://github.com/cbcrg/tcoffee/issues/67__;!!D9dNQwwGXtA!RXZhNhzlhOz5Q3K_sBSApLfGdwknAEYirX-X2CfftLsuFf24AfFmNJ1xVPWQZ5NQkIs0ND_PfeDrcWqrg8wV08xbR5lW$>,
or unsubscribe
<https://urldefense.com/v3/__https://github.com/notifications/unsubscribe-auth/ABML3KLKNZJ43R3Q2SECZHDZVHGWVAVCNFSM6AAAAABNY3SVSSVHI2DSMVQWIX3LMV43ASLTON2WKOZSGUYTANZVGIYTQMQ__;!!D9dNQwwGXtA!RXZhNhzlhOz5Q3K_sBSApLfGdwknAEYirX-X2CfftLsuFf24AfFmNJ1xVPWQZ5NQkIs0ND_PfeDrcWqrg8wV0552k3Mt$>.
You are receiving this because you are subscribed to this
thread.Message ID: ***@***.***>
--------------EJsw4js0L2rvtSqsV00898Ng
Content-Type: text/html; charset=UTF-8
Content-Transfer-Encoding: 8bit
<!DOCTYPE html><html><head>
<meta http-equiv="Content-Type" content="text/html; charset=utf-8">
</head>
<body>
<p>Thanks for the report. These are trivial rounding things, but
yes, I appreciate they can be annoying. For the bootstrap, an
integer is usually expected.</p>
<p>This should not be difficult to fix. Can you please send an
example file and the command line?</p>
<p>Cheers,</p>
<p>Cedric <br>
</p>
<div class="moz-cite-prefix">On 6/9/24 18:01, kr3118 wrote:<br>
</div>
<blockquote type="cite" ***@***.***">
<p dir="auto">Hi,</p>
<p dir="auto">I am using the code/decode function to turn tip
labels from accessions to species names. When I do this however,
all branch lengths get reduced to 5 decimal places and all
branch support values become 1 or 0 (if they were 1.00 before
they remain 1, if they were less then 1.00, they get turned into
0). Is there a way to resolve this issue?</p>
<p dir="auto">Many thanks</p>
<p style="font-size:small;-webkit-text-size-adjust:none;color:#666;">—<br>
Reply to this email directly, <a href="https://urldefense.com/v3/__https://github.com/cbcrg/tcoffee/issues/67__;!!D9dNQwwGXtA!RXZhNhzlhOz5Q3K_sBSApLfGdwknAEYirX-X2CfftLsuFf24AfFmNJ1xVPWQZ5NQkIs0ND_PfeDrcWqrg8wV08xbR5lW$" moz-do-not-send="true">view it on GitHub</a>, or <a href="https://urldefense.com/v3/__https://github.com/notifications/unsubscribe-auth/ABML3KLKNZJ43R3Q2SECZHDZVHGWVAVCNFSM6AAAAABNY3SVSSVHI2DSMVQWIX3LMV43ASLTON2WKOZSGUYTANZVGIYTQMQ__;!!D9dNQwwGXtA!RXZhNhzlhOz5Q3K_sBSApLfGdwknAEYirX-X2CfftLsuFf24AfFmNJ1xVPWQZ5NQkIs0ND_PfeDrcWqrg8wV0552k3Mt$" moz-do-not-send="true">unsubscribe</a>.<br>
You are receiving this because you are subscribed to this
thread.<img src="https://github.com/notifications/beacon/ABML3KIY5BVW3TO7LG2CFG3ZVHGWVA5CNFSM6AAAAABNY3SVSSWGG33NNVSW45C7OR4XAZNFJFZXG5LFVJRW63LNMVXHIX3JMTHJLJYJWY.gif" height="1" width="1" alt="" moz-do-not-send="true"><span style="color: transparent; font-size: 0; display: none; visibility: hidden; overflow: hidden; opacity: 0; width: 0; height: 0; max-width: 0; max-height: 0; mso-hide: all">Message
ID: <span><cbcrg/tcoffee/issues/67</span><span>@</span><span>github</span><span>.</span><span>com></span></span></p>
<script type="application/ld+json">[
{
***@***.***": "http://schema.org",
***@***.***": "EmailMessage",
"potentialAction": {
***@***.***": "ViewAction",
"target": "#67",
"url": "#67",
"name": "View Issue"
},
"description": "View this Issue on GitHub",
"publisher": {
***@***.***": "Organization",
"name": "GitHub",
"url": "https://github.com"
}
}
]</script>
</blockquote>
</body>
</html>
…--------------EJsw4js0L2rvtSqsV00898Ng--
|
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Hi,
I am using the code/decode function to turn tip labels from accessions to species names. When I do this however, all branch lengths get reduced to 5 decimal places and all branch support values become 1 or 0 (if they were 1.00 before they remain 1, if they were less then 1.00, they get turned into 0). Is there a way to resolve this issue?
Many thanks
The text was updated successfully, but these errors were encountered: