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sn_run_seurat(): Implements a comprehensive workflow to run Seurat analyses. This function is a high-level wrapper that integrates various steps of Seurat analysis into a single, streamlined function. -
sn_run_seurat_standard(): Implements a standard Seurat workflow. -
sn_run_seurat_sctransform(): This function is designed to normalize single-cell RNA sequencing data using the SCTransform method, providing more accurate and reliable results. -
sn_run_seurat_postprocessing(): Executes post-processing steps for Seurat workflow including neighbor finding, clustering, and UMAP/t-SNE reduction. -
sn_check_package(): This function check if packages are installed and load them. -
sn_standardize_genes(): Converts gene names of a Seurat object to a dictionary of standard symbols. This function is useful prior to integration of datasets from different studies, where gene names may be inconsistent.