From 788163bd4e0a627520cb4b13f25df9cc76108ac8 Mon Sep 17 00:00:00 2001 From: "Diego Alvarez S." Date: Mon, 26 Aug 2024 14:01:22 -0300 Subject: [PATCH] README clarification --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 0e07ff2..86c7534 100644 --- a/README.md +++ b/README.md @@ -38,7 +38,7 @@ Uses Dorado for basecalling and demultiplexing. | `output_dir` | No | `demultiplex_results` | Directory for saving results. | | `fastq_output` | No | `true` | Generates FASTQ files if `true`; otherwise, generates UBAM files. | | `qscore_filter` | No | `10` | Minimum QScore threshold for "pass" data, used in demultiplexing. | -| `dorado_basecalling_model` | No | `sup` | Model used for basecalling. | +| `dorado_basecalling_model` | No | `sup` | Model used for basecalling. Check Dorado help for available options. | | `dorado_basecalling_extra_config` | No | - | Additional configuration options for Dorado basecalling. | | `dorado_basecalling_gpus` | No | `1` | Number of GPUs to allocate for basecalling. | | `skip_demultiplexing` | No | `false` | Skips demultiplexing if `true`. |