diff --git a/.github/workflows/run-tests.yml b/.github/workflows/run-tests.yml index b68e169f..0b26dcc0 100644 --- a/.github/workflows/run-tests.yml +++ b/.github/workflows/run-tests.yml @@ -1,9 +1,10 @@ name: Full Tests on: - schedule: - - cron: "0 0 * * *" # daily pull_request: workflow_dispatch: + workflow_run: + workflows: [update-testing-data] + types: [completed] jobs: run: @@ -29,18 +30,17 @@ jobs: pip install pytest-xdist git config --global user.email "CI@example.com" git config --global user.name "CI Almighty" - pip install wheel # needed for scanimage + pip install wheel==0.41.2 # needed for scanimage - name: Install roiextractors with minimal requirements run: pip install .[test] + - name: Run minimal tests run: pytest tests/test_internals -n auto --dist loadscope - name: Test full installation (-e needed for codecov report) run: pip install -e .[full] - - - name: Get ophys_testing_data current head hash id: ophys run: echo "::set-output name=HASH_OPHYS_DATASET::$(git ls-remote https://gin.g-node.org/CatalystNeuro/ophys_testing_data.git HEAD | cut -f1)" @@ -50,17 +50,6 @@ jobs: with: path: ./ophys_testing_data key: ophys-datasets-042023-${{ matrix.os }}-${{ steps.ophys.outputs.HASH_OPHYS_DATASET }} - - if: steps.cache-ophys-datasets.outputs.cache-hit == false - name: Install and configure AWS CLI - run: | - pip install awscli==1.25.27 - aws configure set aws_access_key_id ${{ secrets.AWS_ACCESS_KEY_ID }} - aws configure set aws_secret_access_key ${{ secrets.AWS_SECRET_ACCESS_KEY }} - - if: steps.cache-ophys-datasets.outputs.cache-hit == false - name: Download data from S3 - run: aws s3 cp --recursive s3://${{ secrets.S3_GIN_BUCKET }}//ophys_testing_data ./ophys_testing_data - - - name: Run full pytest with coverage run: pytest -n auto --dist loadscope --cov=./ --cov-report xml:./codecov.xml diff --git a/.github/workflows/update-testing-data.yml b/.github/workflows/update-testing-data.yml index a2551302..d012a203 100644 --- a/.github/workflows/update-testing-data.yml +++ b/.github/workflows/update-testing-data.yml @@ -1,5 +1,7 @@ -name: Update testing data +name: update-testing-data on: + schedule: + - cron: "0 0 * * *" # daily workflow_dispatch: jobs: @@ -24,7 +26,7 @@ jobs: pip install -U pip git config --global user.email "CI@example.com" git config --global user.name "CI Almighty" - pip install wheel # needed for scanimage + pip install wheel==0.41.2 # needed for scanimage - name: Get ophys_testing_data current head hash id: ophys @@ -38,7 +40,7 @@ jobs: - if: steps.cache-ophys-datasets.outputs.cache-hit == false name: Install and configure AWS CLI run: | - pip install awscli==1.25.27 + pip install awscli==1.29.56 aws configure set aws_access_key_id ${{ secrets.AWS_ACCESS_KEY_ID }} aws configure set aws_secret_access_key ${{ secrets.AWS_SECRET_ACCESS_KEY }} - if: steps.cache-ophys-datasets.outputs.cache-hit == false