dev-testing.yaml

name: Dev Testing
on:
  pull_request:
  workflow_dispatch:

concurrency:
  group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
  cancel-in-progress: true

jobs:
  run:
    name: Ubuntu tests with Python ${{ matrix.python-version }}
    runs-on: ubuntu-latest
    strategy:
      fail-fast: false
      matrix:
        python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"]
    steps:
      - uses: actions/checkout@v4
      - run: git fetch --prune --unshallow --tags
      - name: Setup Python ${{ matrix.python-version }}
        uses: actions/setup-python@v5
        with:
          python-version: ${{ matrix.python-version }}

      - name: Global Setup
        run: |
            pip install -U pip
            pip install pytest-xdist
            git config --global user.email "CI@example.com"
            git config --global user.name "CI Almighty"
            pip install wheel==0.41.2  # needed for scanimage

      - name: Install full requirements
        run: |
            pip install .[test]
            pip install .[full]

      - name: Clone and Install NeuroConv
        run: |
            git clone https://github.com/catalystneuro/neuroconv.git
            cd neuroconv
            pip install --no-cache-dir .[full,test]
            cd ../
      - name: Get ophys_testing_data current head hash
        id: ophys
        run: echo "::set-output name=HASH_OPHYS_DATASET::$(git ls-remote https://gin.g-node.org/CatalystNeuro/ophys_testing_data.git HEAD | cut -f1)"
      - name: Cache ophys dataset - ${{ steps.ophys.outputs.HASH_OPHYS_DATASET }}
        uses: actions/cache@v2
        id: cache-ophys-datasets
        with:
          path: ./ophys_testing_data
          key: ophys-datasets-042023-ubuntu-latest-${{ steps.ophys.outputs.HASH_OPHYS_DATASET }}

      - name: Run NeuroConv tests
        run: |
            pytest -n auto --dist loadscope neuroconv/tests/test_ophys neuroconv/tests/test_on_data/test_imaging_interfaces.py neuroconv/tests/test_on_data/test_segmentation_interfaces.py