From f3dee1b3c0057082358b58ad9fdacdd4c1844f5c Mon Sep 17 00:00:00 2001
From: Cody Baker <51133164+CodyCBakerPhD@users.noreply.github.com>
Date: Thu, 21 Mar 2024 18:45:19 -0400
Subject: [PATCH] fix scope

---
 ...ocker_yaml_conversion_specification_cli.py | 96 +++++++++----------
 1 file changed, 48 insertions(+), 48 deletions(-)

diff --git a/tests/docker_yaml_conversion_specification_cli.py b/tests/docker_yaml_conversion_specification_cli.py
index b7d2ddb2b..9d2867be9 100644
--- a/tests/docker_yaml_conversion_specification_cli.py
+++ b/tests/docker_yaml_conversion_specification_cli.py
@@ -125,52 +125,52 @@ def test_run_conversion_from_yaml_default_nwbfile_name(self):
             assert "spike_times" in nwbfile.units
 
 
-def test_run_conversion_from_yaml_variable(self):
-    path_to_test_yml_files = Path(__file__).parent / "conversion_specifications"
-    yaml_file_path = path_to_test_yml_files / "GIN_conversion_specification.yml"
-
-    with open(file=yaml_file_path, mode="r") as io:
-        yaml_lines = io.readlines()
-
-    yaml_string = "".join(yaml_lines)
-    os.environ["NEUROCONV_YAML"] = yaml_string
-    os.environ["NEUROCONV_DATA_PATH"] = DATA_PATH
-    os.environ["NEUROCONV_OUTPUT_PATH"] = OUTPUT_PATH
-
-    deploy_process(
-        command=(
-            "docker run -t " f"--volume {self.source_volume}:/neuroconv ghcr.io/catalystneuro/neuroconv:yaml_variable"
+    def test_run_conversion_from_yaml_variable(self):
+        path_to_test_yml_files = Path(__file__).parent / "conversion_specifications"
+        yaml_file_path = path_to_test_yml_files / "GIN_conversion_specification.yml"
+    
+        with open(file=yaml_file_path, mode="r") as io:
+            yaml_lines = io.readlines()
+    
+        yaml_string = "".join(yaml_lines)
+        os.environ["NEUROCONV_YAML"] = yaml_string
+        os.environ["NEUROCONV_DATA_PATH"] = DATA_PATH
+        os.environ["NEUROCONV_OUTPUT_PATH"] = OUTPUT_PATH
+    
+        deploy_process(
+            command=(
+                "docker run -t " f"--volume {self.source_volume}:/neuroconv ghcr.io/catalystneuro/neuroconv:yaml_variable"
+            )
         )
-    )
-
-    nwbfile_path = self.test_folder / "example_converter_spec_1.nwb"
-    assert nwbfile_path.exists(), f"`run_conversion_from_yaml` failed to create the file at '{nwbfile_path}'! "
-    with NWBHDF5IO(path=nwbfile_path, mode="r") as io:
-        nwbfile = io.read()
-        assert nwbfile.session_description == "Subject navigating a Y-shaped maze."
-        assert nwbfile.lab == "My Lab"
-        assert nwbfile.institution == "My Institution"
-        assert nwbfile.session_start_time == datetime.fromisoformat("2020-10-09T21:19:09+00:00")
-        assert nwbfile.subject.subject_id == "1"
-        assert "ElectricalSeriesAP" in nwbfile.acquisition
-
-    nwbfile_path = self.test_folder / "example_converter_spec_2.nwb"
-    assert nwbfile_path.exists(), f"`run_conversion_from_yaml` failed to create the file at '{nwbfile_path}'! "
-    with NWBHDF5IO(path=nwbfile_path, mode="r") as io:
-        nwbfile = io.read()
-        assert nwbfile.session_description == "Subject navigating a Y-shaped maze."
-        assert nwbfile.lab == "My Lab"
-        assert nwbfile.institution == "My Institution"
-        assert nwbfile.session_start_time == datetime.fromisoformat("2020-10-10T21:19:09+00:00")
-        assert nwbfile.subject.subject_id == "002"
-
-    nwbfile_path = self.test_folder / "example_converter_spec_3.nwb"
-    assert nwbfile_path.exists(), f"`run_conversion_from_yaml` failed to create the file at '{nwbfile_path}'! "
-    with NWBHDF5IO(path=nwbfile_path, mode="r") as io:
-        nwbfile = io.read()
-        assert nwbfile.session_description == "Auto-generated by neuroconv"
-        assert nwbfile.lab == "My Lab"
-        assert nwbfile.institution == "My Institution"
-        assert nwbfile.session_start_time == datetime.fromisoformat("2020-10-11T21:19:09+00:00")
-        assert nwbfile.subject.subject_id == "Subject Name"
-        assert "spike_times" in nwbfile.units
+    
+        nwbfile_path = self.test_folder / "example_converter_spec_1.nwb"
+        assert nwbfile_path.exists(), f"`run_conversion_from_yaml` failed to create the file at '{nwbfile_path}'! "
+        with NWBHDF5IO(path=nwbfile_path, mode="r") as io:
+            nwbfile = io.read()
+            assert nwbfile.session_description == "Subject navigating a Y-shaped maze."
+            assert nwbfile.lab == "My Lab"
+            assert nwbfile.institution == "My Institution"
+            assert nwbfile.session_start_time == datetime.fromisoformat("2020-10-09T21:19:09+00:00")
+            assert nwbfile.subject.subject_id == "1"
+            assert "ElectricalSeriesAP" in nwbfile.acquisition
+    
+        nwbfile_path = self.test_folder / "example_converter_spec_2.nwb"
+        assert nwbfile_path.exists(), f"`run_conversion_from_yaml` failed to create the file at '{nwbfile_path}'! "
+        with NWBHDF5IO(path=nwbfile_path, mode="r") as io:
+            nwbfile = io.read()
+            assert nwbfile.session_description == "Subject navigating a Y-shaped maze."
+            assert nwbfile.lab == "My Lab"
+            assert nwbfile.institution == "My Institution"
+            assert nwbfile.session_start_time == datetime.fromisoformat("2020-10-10T21:19:09+00:00")
+            assert nwbfile.subject.subject_id == "002"
+    
+        nwbfile_path = self.test_folder / "example_converter_spec_3.nwb"
+        assert nwbfile_path.exists(), f"`run_conversion_from_yaml` failed to create the file at '{nwbfile_path}'! "
+        with NWBHDF5IO(path=nwbfile_path, mode="r") as io:
+            nwbfile = io.read()
+            assert nwbfile.session_description == "Auto-generated by neuroconv"
+            assert nwbfile.lab == "My Lab"
+            assert nwbfile.institution == "My Institution"
+            assert nwbfile.session_start_time == datetime.fromisoformat("2020-10-11T21:19:09+00:00")
+            assert nwbfile.subject.subject_id == "Subject Name"
+            assert "spike_times" in nwbfile.units