diff --git a/tests/docker_yaml_conversion_specification_cli.py b/tests/docker_yaml_conversion_specification_cli.py index 9d2867be9..fa68da000 100644 --- a/tests/docker_yaml_conversion_specification_cli.py +++ b/tests/docker_yaml_conversion_specification_cli.py @@ -124,25 +124,25 @@ def test_run_conversion_from_yaml_default_nwbfile_name(self): assert nwbfile.subject.subject_id == "Subject Name" assert "spike_times" in nwbfile.units - def test_run_conversion_from_yaml_variable(self): path_to_test_yml_files = Path(__file__).parent / "conversion_specifications" yaml_file_path = path_to_test_yml_files / "GIN_conversion_specification.yml" - + with open(file=yaml_file_path, mode="r") as io: yaml_lines = io.readlines() - + yaml_string = "".join(yaml_lines) os.environ["NEUROCONV_YAML"] = yaml_string os.environ["NEUROCONV_DATA_PATH"] = DATA_PATH os.environ["NEUROCONV_OUTPUT_PATH"] = OUTPUT_PATH - + deploy_process( command=( - "docker run -t " f"--volume {self.source_volume}:/neuroconv ghcr.io/catalystneuro/neuroconv:yaml_variable" + "docker run -t " + f"--volume {self.source_volume}:/neuroconv ghcr.io/catalystneuro/neuroconv:yaml_variable" ) ) - + nwbfile_path = self.test_folder / "example_converter_spec_1.nwb" assert nwbfile_path.exists(), f"`run_conversion_from_yaml` failed to create the file at '{nwbfile_path}'! " with NWBHDF5IO(path=nwbfile_path, mode="r") as io: @@ -153,7 +153,7 @@ def test_run_conversion_from_yaml_variable(self): assert nwbfile.session_start_time == datetime.fromisoformat("2020-10-09T21:19:09+00:00") assert nwbfile.subject.subject_id == "1" assert "ElectricalSeriesAP" in nwbfile.acquisition - + nwbfile_path = self.test_folder / "example_converter_spec_2.nwb" assert nwbfile_path.exists(), f"`run_conversion_from_yaml` failed to create the file at '{nwbfile_path}'! " with NWBHDF5IO(path=nwbfile_path, mode="r") as io: @@ -163,7 +163,7 @@ def test_run_conversion_from_yaml_variable(self): assert nwbfile.institution == "My Institution" assert nwbfile.session_start_time == datetime.fromisoformat("2020-10-10T21:19:09+00:00") assert nwbfile.subject.subject_id == "002" - + nwbfile_path = self.test_folder / "example_converter_spec_3.nwb" assert nwbfile_path.exists(), f"`run_conversion_from_yaml` failed to create the file at '{nwbfile_path}'! " with NWBHDF5IO(path=nwbfile_path, mode="r") as io: