diff --git a/frozen_dependencies.txt b/frozen_dependencies.txt index 657b136..5f9a031 100644 --- a/frozen_dependencies.txt +++ b/frozen_dependencies.txt @@ -115,7 +115,8 @@ natsort==8.4.0 nbclient==0.8.0 nbconvert==7.7.3 nbformat==5.9.2 --e git+https://github.com/pauladkisson/ndx-moseq.git@2c25aaa85bb70762111a520918c73abac4ac0801#egg=ndx_depth_moseq +# Editable install with no version control (ndx-depth-moseq==0.1.0) +-e /opt/anaconda3/envs/datta_env/lib/python3.10/site-packages ndx-events==0.2.0 ndx-grayscalevolume==0.0.2 ndx-icephys-meta==0.1.0 diff --git a/src/datta_lab_to_nwb/markowitz_gillis_nature_2023/convert_session.py b/src/datta_lab_to_nwb/markowitz_gillis_nature_2023/convert_session.py index 0b57fa7..b2710ac 100644 --- a/src/datta_lab_to_nwb/markowitz_gillis_nature_2023/convert_session.py +++ b/src/datta_lab_to_nwb/markowitz_gillis_nature_2023/convert_session.py @@ -10,7 +10,7 @@ # Local from datta_lab_to_nwb.markowitz_gillis_nature_2023.postconversion import reproduce_fig1d -from datta_lab_to_nwb import markowitz_gillis_nature_2023 +from datta_lab_to_nwb.markowitz_gillis_nature_2023.nwbconverter import DattaNWBConverter def session_to_nwb( @@ -114,7 +114,7 @@ def session_to_nwb( if experiment_type == "velocity-modulation": conversion_options["BehavioralSyllable"] = dict(velocity_modulation=True) - converter = markowitz_gillis_nature_2023.NWBConverter(source_data=source_data) + converter = DattaNWBConverter(source_data=source_data) metadata = converter.get_metadata() # Update metadata diff --git a/src/datta_lab_to_nwb/markowitz_gillis_nature_2023/nwbconverter.py b/src/datta_lab_to_nwb/markowitz_gillis_nature_2023/nwbconverter.py index f031512..7760b9a 100644 --- a/src/datta_lab_to_nwb/markowitz_gillis_nature_2023/nwbconverter.py +++ b/src/datta_lab_to_nwb/markowitz_gillis_nature_2023/nwbconverter.py @@ -8,7 +8,7 @@ from .irvideointerface import IRVideoInterface -class NWBConverter(NWBConverter): +class DattaNWBConverter(NWBConverter): """Primary conversion class.""" data_interface_classes = dict( diff --git a/src/datta_lab_to_nwb/markowitz_gillis_nature_2023_HEK/convert_session.py b/src/datta_lab_to_nwb/markowitz_gillis_nature_2023_HEK/convert_session.py index ea942f7..3757bbf 100644 --- a/src/datta_lab_to_nwb/markowitz_gillis_nature_2023_HEK/convert_session.py +++ b/src/datta_lab_to_nwb/markowitz_gillis_nature_2023_HEK/convert_session.py @@ -2,7 +2,7 @@ from pathlib import Path from typing import Union from neuroconv.utils import dict_deep_update, load_dict_from_file -from datta_lab_to_nwb import markowitz_gillis_nature_2023_HEK +from datta_lab_to_nwb.markowitz_gillis_nature_2023_HEK.nwbconverter import DattaHEKNWBConverter import shutil from pynwb import NWBHDF5IO from datta_lab_to_nwb.markowitz_gillis_nature_2023_HEK.postconversion import reproduce_figS1abcd @@ -28,7 +28,7 @@ def session_to_nwb( conversion_options = { "HEK": dict(), } - converter = markowitz_gillis_nature_2023_HEK.NWBConverter(source_data=source_data) + converter = DattaHEKNWBConverter(source_data=source_data) metadata = converter.get_metadata() # Update metadata diff --git a/src/datta_lab_to_nwb/markowitz_gillis_nature_2023_HEK/nwbconverter.py b/src/datta_lab_to_nwb/markowitz_gillis_nature_2023_HEK/nwbconverter.py index 7600073..3b7e091 100644 --- a/src/datta_lab_to_nwb/markowitz_gillis_nature_2023_HEK/nwbconverter.py +++ b/src/datta_lab_to_nwb/markowitz_gillis_nature_2023_HEK/nwbconverter.py @@ -3,7 +3,7 @@ from .hekinterface import HEKInterface -class NWBConverter(NWBConverter): +class DattaHEKNWBConverter(NWBConverter): """Primary conversion class.""" data_interface_classes = dict(