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IBL-to-nwb

PyPI version License

This repository houses conversion pipelines for the IBL data releases, including the Brain Wide Map project.

Installation

For Brain Wide Map,

git clone https:/github.com/catalystneuro/IBL-to-nwb
cd IBL-to-nwb
pip install -e .[brainwide_map]

(not tested on all platforms or Python environments)

How to convert processed-only data for BWM

From the first level of the repo as the working directory,

python ibl_to_nwb/updated_conversion/brainwide_map/convert_brainwide_map_processed_only_parallel.py

The script contains some values that might want to be changed, such as number_of_parallel_jobs, or base_path if not running on the DANDI Hub.

The block about skipping sessions already on DANDI would need to be commented out if a 'patch' conversion + new release is being performed.

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Conversion of IBL data to NWB format.

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