From 11faecb52bf469df63eeb141cfb852e4467fef02 Mon Sep 17 00:00:00 2001 From: bendnorman Date: Thu, 25 Jul 2024 16:09:19 -0800 Subject: [PATCH 01/13] Working duckdb schema creation without constraints or enums --- devtools/parquet_to_duckdb.py | 81 + environments/conda-linux-64.lock.yml | 613 - environments/conda-lock.yml | 26148 ------------------------ environments/conda-osx-64.lock.yml | 592 - environments/conda-osx-arm64.lock.yml | 592 - pyproject.toml | 1 + src/pudl/metadata/classes.py | 102 +- src/pudl/metadata/fields.py | 4 +- 8 files changed, 144 insertions(+), 27989 deletions(-) create mode 100755 devtools/parquet_to_duckdb.py delete mode 100644 environments/conda-linux-64.lock.yml delete mode 100644 environments/conda-lock.yml delete mode 100644 environments/conda-osx-64.lock.yml delete mode 100644 environments/conda-osx-arm64.lock.yml diff --git a/devtools/parquet_to_duckdb.py b/devtools/parquet_to_duckdb.py new file mode 100755 index 0000000000..3c364d39d3 --- /dev/null +++ b/devtools/parquet_to_duckdb.py @@ -0,0 +1,81 @@ +#! /usr/bin/env python +"""Script that creates a DuckDB database from a collection of PUDL Parquet files.""" + +import logging +from pathlib import Path + +import click +import sqlalchemy as sa + +from pudl.metadata import PUDL_PACKAGE +from pudl.metadata.classes import Package + +# Configure logging +logging.basicConfig(level=logging.INFO) +logger = logging.getLogger(__name__) + + +@click.command() +@click.argument("parquet_dir", type=click.Path(exists=True, resolve_path=True)) +@click.argument( + "duckdb_path", type=click.Path(resolve_path=True, writable=True, allow_dash=False) +) +def convert_parquet_to_duckdb(parquet_dir: str, duckdb_path: str): + """Convert a directory of Parquet files to a DuckDB database. + + Args: + parquet_dir: Path to a directory of parquet files. + duckdb_path: Path to the new DuckDB database file (should not exist). + + Example: + python parquet_to_duckdb.py /path/to/parquet/directory duckdb.db + """ + parquet_dir = Path(parquet_dir) + duckdb_path = Path(duckdb_path) + + # Check if DuckDB file already exists + if duckdb_path.exists(): + click.echo( + f"Error: DuckDB file '{duckdb_path}' already exists. Please provide a new filename." + ) + return + + # create duck db schema from pudl package + resource_ids = (r.name for r in PUDL_PACKAGE.resources if len(r.name) <= 63) + package = Package.from_resource_ids(resource_ids) + + metadata = package.to_sql(dialect="duckdb") + engine = sa.create_engine(f"duckdb:///{duckdb_path}") + metadata.create_all(engine) + + # iterate through the parquet files and add them to the db + # throw an error if there is a missing paruqet file or an extra one + + # # Fetch table names from SQLite database using DuckDB + # duckdb_cursor.execute(f"ATTACH DATABASE '{sqlite_path}' AS sqlite_db;") + # duckdb_cursor.execute("SELECT name FROM main.sqlite_master WHERE type='table';") + # table_names = [row[0] for row in duckdb_cursor.fetchall()] + + # # Copy tables from SQLite to DuckDB + # for table_name in table_names: + # logger.info(f"Working on table: {table_name}") + # # Fetch column names and types from SQLite table using DuckDB + # duckdb_cursor.execute(f"PRAGMA table_info(sqlite_db.{table_name});") + # columns_info = duckdb_cursor.fetchall() + # column_definitions = ", ".join([f"{col[1]} {col[2]}" for col in columns_info]) + + # # Create equivalent table in DuckDB + # duckdb_cursor.execute(f"CREATE TABLE {table_name} ({column_definitions});") + + # # Copy data from SQLite to DuckDB using DuckDB + # duckdb_cursor.execute( + # f"INSERT INTO {table_name} SELECT * FROM sqlite_db.{table_name};" # noqa: S608 + # ) + + # # Commit and close connections + # duckdb_conn.commit() + # duckdb_conn.close() + + +if __name__ == "__main__": + convert_parquet_to_duckdb() diff --git a/environments/conda-linux-64.lock.yml b/environments/conda-linux-64.lock.yml deleted file mode 100644 index cf5ce0e5a2..0000000000 --- a/environments/conda-linux-64.lock.yml +++ /dev/null @@ -1,613 +0,0 @@ -# Generated by conda-lock. -# platform: linux-64 -# input_hash: f312002a073573f4d9018d29f15ae9453230d46d0498c0b00f96ddd93bd70b4e - 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- tiledb=2.24.2=h5def871_2 - - time-machine=2.14.2=py312h7e5086c_0 - - timezonefinder=6.5.2=py312h7e5086c_0 - - tinycss2=1.3.0=pyhd8ed1ab_0 - - tk=8.6.13=h5083fa2_1 - - toml=0.10.2=pyhd8ed1ab_0 - - tomli=2.0.1=pyhd8ed1ab_0 - - tomlkit=0.13.0=pyha770c72_0 - - toolz=0.12.1=pyhd8ed1ab_0 - - toposort=1.10=pyhd8ed1ab_0 - - tornado=6.4.1=py312h7e5086c_0 - - tqdm=4.66.4=pyhd8ed1ab_0 - - traitlets=5.14.3=pyhd8ed1ab_0 - - typeguard=4.3.0=pyhd8ed1ab_1 - - typer=0.12.3=pyhd8ed1ab_0 - - typer-slim=0.12.3=pyhd8ed1ab_0 - - typer-slim-standard=0.12.3=hd8ed1ab_0 - - types-python-dateutil=2.9.0.20240316=pyhd8ed1ab_0 - - types-pyyaml=6.0.12.20240311=pyhd8ed1ab_0 - - typing-extensions=4.12.2=hd8ed1ab_0 - - typing_extensions=4.12.2=pyha770c72_0 - - typing_inspect=0.9.0=pyhd8ed1ab_0 - - typing_utils=0.1.0=pyhd8ed1ab_0 - - tzcode=2024a=h93a5062_0 - - tzdata=2024a=h0c530f3_0 - - ukkonen=1.0.1=py312h389731b_4 - - universal_pathlib=0.2.2=pyhd8ed1ab_0 - - uri-template=1.3.0=pyhd8ed1ab_0 - - uriparser=0.9.8=h00cdb27_0 - - urllib3=1.26.19=pyhd8ed1ab_0 - - uvicorn=0.30.3=py312h81bd7bf_0 - - uvicorn-standard=0.30.3=h1f38498_0 - - uvloop=0.19.0=py312he37b823_0 - - validators=0.33.0=pyhd8ed1ab_0 - - virtualenv=20.26.3=pyhd8ed1ab_0 - - watchdog=4.0.1=py312h7e5086c_0 - - watchfiles=0.22.0=py312h552d48e_0 - - wcwidth=0.2.13=pyhd8ed1ab_0 - - webcolors=24.6.0=pyhd8ed1ab_0 - - webencodings=0.5.1=pyhd8ed1ab_2 - - websocket-client=1.8.0=pyhd8ed1ab_0 - - websockets=11.0.3=py312h02f2b3b_1 - - werkzeug=3.0.3=pyhd8ed1ab_0 - - wheel=0.43.0=pyhd8ed1ab_1 - - widgetsnbextension=4.0.11=pyhd8ed1ab_0 - - wrapt=1.16.0=py312he37b823_0 - - xerces-c=3.2.5=hf393695_0 - - xlsxwriter=3.1.9=pyhd8ed1ab_0 - - xorg-libxau=1.0.11=hb547adb_0 - - xorg-libxdmcp=1.1.3=h27ca646_0 - - xyzservices=2024.6.0=pyhd8ed1ab_0 - - xz=5.2.6=h57fd34a_0 - - yaml=0.2.5=h3422bc3_2 - - yarl=1.9.4=py312he37b823_0 - - zeromq=4.3.5=hcc0f68c_4 - - zip=3.0=hb547adb_3 - - zipp=3.19.2=pyhd8ed1ab_0 - - zlib=1.3.1=hfb2fe0b_1 - - zstd=1.5.6=hb46c0d2_0 diff --git a/pyproject.toml b/pyproject.toml index dfc8cf3bc0..28700df223 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -28,6 +28,7 @@ dependencies = [ "dask-expr", # Required for dask[dataframe] "datasette>=0.64", "doc8>=1.1", + "duckdb-engine>=0.12.1", "email-validator>=1.0.3", # pydantic[email] "frictionless>=5,<6", "fsspec>=2024", diff --git a/src/pudl/metadata/classes.py b/src/pudl/metadata/classes.py index 4ef2d4b0fd..246b894dc5 100644 --- a/src/pudl/metadata/classes.py +++ b/src/pudl/metadata/classes.py @@ -554,7 +554,7 @@ class Field(PudlMeta): >>> field.to_pandas_dtype() CategoricalDtype(categories=['x', 'y'], ordered=False, categories_dtype=object) >>> field.to_sql() - Column('x', Enum('x', 'y'), CheckConstraint(...), table=None, comment='X') + Column('x', Enum('x', 'y', name='x_enum'), CheckConstraint(...), table=None, comment='X') >>> field = Field.from_id('utility_id_eia') >>> field.name 'utility_id_eia' @@ -641,7 +641,7 @@ def to_pandas_dtype(self, compact: bool = False) -> str | pd.CategoricalDtype: def to_sql_dtype(self) -> type: # noqa: A003 """Return SQLAlchemy data type.""" if self.constraints.enum and self.type == "string": - return sa.Enum(*self.constraints.enum) + return sa.Enum(*self.constraints.enum, name=f"{self.name}_enum") return FIELD_DTYPES_SQL[self.type] def to_pyarrow_dtype(self) -> pa.lib.DataType: @@ -661,59 +661,71 @@ def to_pyarrow(self) -> pa.Field: def to_sql( # noqa: C901 self, - dialect: Literal["sqlite"] = "sqlite", + dialect: Literal["sqlite", "duckdb"] = "sqlite", check_types: bool = True, check_values: bool = True, ) -> sa.Column: """Return equivalent SQL column.""" - if dialect != "sqlite": - raise NotImplementedError(f"Dialect {dialect} is not supported") checks = [] name = _format_for_sql(self.name, identifier=True) - if check_types: - # Required with TYPEOF since TYPEOF(NULL) = 'null' - prefix = "" if self.constraints.required else f"{name} IS NULL OR " - # Field type - if self.type == "string": - checks.append(f"{prefix}TYPEOF({name}) = 'text'") - elif self.type in ("integer", "year"): - checks.append(f"{prefix}TYPEOF({name}) = 'integer'") - elif self.type == "number": - checks.append(f"{prefix}TYPEOF({name}) = 'real'") - elif self.type == "boolean": - # Just IN (0, 1) accepts floats equal to 0, 1 (0.0, 1.0) - checks.append( - f"{prefix}(TYPEOF({name}) = 'integer' AND {name} IN (0, 1))" - ) - elif self.type == "date": - checks.append(f"{name} IS DATE({name})") - elif self.type == "datetime": - checks.append(f"{name} IS DATETIME({name})") - if check_values: - # Field constraints - if self.constraints.min_length is not None: - checks.append(f"LENGTH({name}) >= {self.constraints.min_length}") - if self.constraints.max_length is not None: - checks.append(f"LENGTH({name}) <= {self.constraints.max_length}") - if self.constraints.minimum is not None: - minimum = _format_for_sql(self.constraints.minimum) - checks.append(f"{name} >= {minimum}") - if self.constraints.maximum is not None: - maximum = _format_for_sql(self.constraints.maximum) - checks.append(f"{name} <= {maximum}") - if self.constraints.pattern: - pattern = _format_for_sql(self.constraints.pattern) - checks.append(f"{name} REGEXP {pattern}") - if self.constraints.enum: - enum = [_format_for_sql(x) for x in self.constraints.enum] - checks.append(f"{name} IN ({', '.join(enum)})") + field_type = self.to_sql_dtype() + if dialect == "sqlite": + if check_types: + # Required with TYPEOF since TYPEOF(NULL) = 'null' + prefix = "" if self.constraints.required else f"{name} IS NULL OR " + # Field type + if self.type == "string": + checks.append(f"{prefix}TYPEOF({name}) = 'text'") + elif self.type in ("integer", "year"): + checks.append(f"{prefix}TYPEOF({name}) = 'integer'") + elif self.type == "number": + checks.append(f"{prefix}TYPEOF({name}) = 'real'") + elif self.type == "boolean": + # Just IN (0, 1) accepts floats equal to 0, 1 (0.0, 1.0) + checks.append( + f"{prefix}(TYPEOF({name}) = 'integer' AND {name} IN (0, 1))" + ) + elif self.type == "date": + checks.append(f"{name} IS DATE({name})") + elif self.type == "datetime": + checks.append(f"{name} IS DATETIME({name})") + if check_values: + # Field constraints + if self.constraints.min_length is not None: + checks.append(f"LENGTH({name}) >= {self.constraints.min_length}") + if self.constraints.max_length is not None: + checks.append(f"LENGTH({name}) <= {self.constraints.max_length}") + if self.constraints.minimum is not None: + minimum = _format_for_sql(self.constraints.minimum) + checks.append(f"{name} >= {minimum}") + if self.constraints.maximum is not None: + maximum = _format_for_sql(self.constraints.maximum) + checks.append(f"{name} <= {maximum}") + if self.constraints.pattern: + pattern = _format_for_sql(self.constraints.pattern) + checks.append(f"{name} REGEXP {pattern}") + if self.constraints.enum: + enum = [_format_for_sql(x) for x in self.constraints.enum] + checks.append(f"{name} IN ({', '.join(enum)})") + elif dialect == "duckdb": + if isinstance(field_type, sa.Enum): + field_type = sa.String + if check_values: + checks = [] + else: + raise NotImplementedError(f"Dialect {dialect} is not supported") + # string length greater, less than + # number is greater, less than + # string Matches regex + # If type is an ENUM, make the type a string. This is not ideal return sa.Column( self.name, - self.to_sql_dtype(), + field_type, *[sa.CheckConstraint(check, name=hash(check)) for check in checks], nullable=not self.constraints.required, unique=self.constraints.unique, comment=self.description, + autoincrement=False, # https://github.com/Mause/duckdb_engine/issues/595#issuecomment-1495408566 ) def encode(self, col: pd.Series, dtype: type | None = None) -> pd.Series: # noqa: A003 @@ -1462,6 +1474,7 @@ def to_sql( metadata: sa.MetaData = None, check_types: bool = True, check_values: bool = True, + dialect: Literal["sqlite", "duckdb"] = "sqlite", ) -> sa.Table: """Return equivalent SQL Table.""" if metadata is None: @@ -1470,6 +1483,7 @@ def to_sql( f.to_sql( check_types=check_types, check_values=check_values, + dialect=dialect, ) for f in self.schema.fields ] @@ -2011,6 +2025,7 @@ def to_sql( self, check_types: bool = True, check_values: bool = True, + dialect: Literal["sqlite", "duckdb"] = "sqlite", ) -> sa.MetaData: """Return equivalent SQL MetaData.""" metadata = sa.MetaData( @@ -2028,6 +2043,7 @@ def to_sql( metadata, check_types=check_types, check_values=check_values, + dialect=dialect, ) return metadata diff --git a/src/pudl/metadata/fields.py b/src/pudl/metadata/fields.py index 404734fb41..3f0f768ed6 100644 --- a/src/pudl/metadata/fields.py +++ b/src/pudl/metadata/fields.py @@ -4995,7 +4995,9 @@ """ FIELD_METADATA_BY_RESOURCE: dict[str, dict[str, Any]] = { - "sector_consolidated_eia": {"code": {"type": "integer"}}, + "core_eia__codes_sector_consolidated": {"code": {"type": "integer"}}, + "core_eia__codes_steam_plant_types": {"code": {"type": "integer"}}, + "core_eia__codes_wind_quality_class": {"code": {"type": "integer"}}, "core_ferc1__yearly_hydroelectric_plants_sched406": { "plant_type": { "type": "string", From e09080810857d3fb2e24518d55d5487934bcfafd Mon Sep 17 00:00:00 2001 From: bendnorman Date: Thu, 25 Jul 2024 16:41:16 -0800 Subject: [PATCH 02/13] Add check contraints to duckdb dialect --- src/pudl/metadata/classes.py | 26 ++++++++++++++++++++------ 1 file changed, 20 insertions(+), 6 deletions(-) diff --git a/src/pudl/metadata/classes.py b/src/pudl/metadata/classes.py index 246b894dc5..967267ddf6 100644 --- a/src/pudl/metadata/classes.py +++ b/src/pudl/metadata/classes.py @@ -709,15 +709,29 @@ def to_sql( # noqa: C901 checks.append(f"{name} IN ({', '.join(enum)})") elif dialect == "duckdb": if isinstance(field_type, sa.Enum): + # TODO: Not supporting enums with duckdb right now because + # code tables primary keys are VARCHARS but the tables that + # reference them have ENUM types. Duckdb throws an error + # because of the mismatched types. It is ok for now because + # the enums are checked in SQLite and the foreign key relationship + # acts as an enum constraint. field_type = sa.String if check_values: - checks = [] + if self.constraints.min_length is not None: + checks.append(f"length({name}) >= {self.constraints.min_length}") + if self.constraints.max_length is not None: + checks.append(f"length({name}) >= {self.constraints.min_length}") + if self.constraints.minimum is not None: + minimum = _format_for_sql(self.constraints.minimum) + checks.append(f"{name} >= {minimum}") + if self.constraints.maximum is not None: + maximum = _format_for_sql(self.constraints.maximum) + checks.append(f"{name} <= {maximum}") + if self.constraints.pattern: + pattern = _format_for_sql(self.constraints.pattern) + checks.append(f"regexp_full_match({name}, {pattern})") else: raise NotImplementedError(f"Dialect {dialect} is not supported") - # string length greater, less than - # number is greater, less than - # string Matches regex - # If type is an ENUM, make the type a string. This is not ideal return sa.Column( self.name, field_type, @@ -725,7 +739,7 @@ def to_sql( # noqa: C901 nullable=not self.constraints.required, unique=self.constraints.unique, comment=self.description, - autoincrement=False, # https://github.com/Mause/duckdb_engine/issues/595#issuecomment-1495408566 + autoincrement=False, # SQLAlchemy converts generic Integer type to Serial type with integer primary keys https://github.com/Mause/duckdb_engine/issues/595#issuecomment-1495408566 ) def encode(self, col: pd.Series, dtype: type | None = None) -> pd.Series: # noqa: A003 From 218460d561d1d10206402529eff5cd69dd42b7d3 Mon Sep 17 00:00:00 2001 From: bendnorman Date: Thu, 25 Jul 2024 16:59:49 -0800 Subject: [PATCH 03/13] Load parquet files into existing duckdb file --- devtools/parquet_to_duckdb.py | 39 +++++++++++------------------------ 1 file changed, 12 insertions(+), 27 deletions(-) diff --git a/devtools/parquet_to_duckdb.py b/devtools/parquet_to_duckdb.py index 3c364d39d3..795bfae406 100755 --- a/devtools/parquet_to_duckdb.py +++ b/devtools/parquet_to_duckdb.py @@ -48,33 +48,18 @@ def convert_parquet_to_duckdb(parquet_dir: str, duckdb_path: str): engine = sa.create_engine(f"duckdb:///{duckdb_path}") metadata.create_all(engine) - # iterate through the parquet files and add them to the db - # throw an error if there is a missing paruqet file or an extra one - - # # Fetch table names from SQLite database using DuckDB - # duckdb_cursor.execute(f"ATTACH DATABASE '{sqlite_path}' AS sqlite_db;") - # duckdb_cursor.execute("SELECT name FROM main.sqlite_master WHERE type='table';") - # table_names = [row[0] for row in duckdb_cursor.fetchall()] - - # # Copy tables from SQLite to DuckDB - # for table_name in table_names: - # logger.info(f"Working on table: {table_name}") - # # Fetch column names and types from SQLite table using DuckDB - # duckdb_cursor.execute(f"PRAGMA table_info(sqlite_db.{table_name});") - # columns_info = duckdb_cursor.fetchall() - # column_definitions = ", ".join([f"{col[1]} {col[2]}" for col in columns_info]) - - # # Create equivalent table in DuckDB - # duckdb_cursor.execute(f"CREATE TABLE {table_name} ({column_definitions});") - - # # Copy data from SQLite to DuckDB using DuckDB - # duckdb_cursor.execute( - # f"INSERT INTO {table_name} SELECT * FROM sqlite_db.{table_name};" # noqa: S608 - # ) - - # # Commit and close connections - # duckdb_conn.commit() - # duckdb_conn.close() + for table in metadata.sorted_tables: + parquet_file_path = parquet_dir / f"{table.name}.parquet" + logger.info(f"Loading table: {table.name} into DuckDB") + if parquet_file_path.exists(): + sql_command = f""" + COPY {table.name} FROM '{parquet_file_path}' (FORMAT PARQUET); + """ + with engine.connect() as conn: + conn.execute(sa.text(sql_command)) + else: + print("File not found: ", parquet_file_path) + # raise FileNotFoundError("Parquet file not found for: ", table.name) if __name__ == "__main__": From 7ed930f2625514c479c532fecc3b5da072b9a762 Mon Sep 17 00:00:00 2001 From: bendnorman Date: Thu, 25 Jul 2024 19:11:11 -0800 Subject: [PATCH 04/13] Add code pk type migration --- ...e1fe774_adjust_some_code_table_pk_types.py | 68 +++++++++++++++++++ 1 file changed, 68 insertions(+) create mode 100644 migrations/versions/7a16ce1fe774_adjust_some_code_table_pk_types.py diff --git a/migrations/versions/7a16ce1fe774_adjust_some_code_table_pk_types.py b/migrations/versions/7a16ce1fe774_adjust_some_code_table_pk_types.py new file mode 100644 index 0000000000..c8cddf3fa0 --- /dev/null +++ b/migrations/versions/7a16ce1fe774_adjust_some_code_table_pk_types.py @@ -0,0 +1,68 @@ +"""Adjust some code table pk types + +Revision ID: 7a16ce1fe774 +Revises: 49d2f4f7d7b7 +Create Date: 2024-07-25 19:09:50.613978 + +""" +from alembic import op +import sqlalchemy as sa + + +# revision identifiers, used by Alembic. +revision = '7a16ce1fe774' +down_revision = '49d2f4f7d7b7' +branch_labels = None +depends_on = None + + +def upgrade() -> None: + # ### commands auto generated by Alembic - please adjust! ### + with op.batch_alter_table('core_eia__codes_sector_consolidated', schema=None) as batch_op: + batch_op.alter_column('code', + existing_type=sa.TEXT(), + type_=sa.Integer(), + existing_nullable=False, + autoincrement=False) + + with op.batch_alter_table('core_eia__codes_steam_plant_types', schema=None) as batch_op: + batch_op.alter_column('code', + existing_type=sa.TEXT(), + type_=sa.Integer(), + existing_nullable=False, + autoincrement=False) + + with op.batch_alter_table('core_eia__codes_wind_quality_class', schema=None) as batch_op: + batch_op.alter_column('code', + existing_type=sa.TEXT(), + type_=sa.Integer(), + existing_nullable=False, + autoincrement=False) + + # ### end Alembic commands ### + + +def downgrade() -> None: + # ### commands auto generated by Alembic - please adjust! ### + with op.batch_alter_table('core_eia__codes_wind_quality_class', schema=None) as batch_op: + batch_op.alter_column('code', + existing_type=sa.Integer(), + type_=sa.TEXT(), + existing_nullable=False, + autoincrement=False) + + with op.batch_alter_table('core_eia__codes_steam_plant_types', schema=None) as batch_op: + batch_op.alter_column('code', + existing_type=sa.Integer(), + type_=sa.TEXT(), + existing_nullable=False, + autoincrement=False) + + with op.batch_alter_table('core_eia__codes_sector_consolidated', schema=None) as batch_op: + batch_op.alter_column('code', + existing_type=sa.Integer(), + type_=sa.TEXT(), + existing_nullable=False, + autoincrement=False) + + # ### end Alembic commands ### From c94abf723703276f2188a4464e7add1ddbff288f Mon Sep 17 00:00:00 2001 From: bendnorman Date: Fri, 26 Jul 2024 11:39:51 -0800 Subject: [PATCH 05/13] Filter out large tables for sqlite but include for duckdb Add option to disable foreign keys because it slows down the duckdb loading time --- devtools/parquet_to_duckdb.py | 59 ++++++++++++++++++++++++++--------- src/pudl/metadata/classes.py | 32 +++++++++++++------ 2 files changed, 66 insertions(+), 25 deletions(-) diff --git a/devtools/parquet_to_duckdb.py b/devtools/parquet_to_duckdb.py index a5c5f8a121..91cee4f219 100755 --- a/devtools/parquet_to_duckdb.py +++ b/devtools/parquet_to_duckdb.py @@ -5,6 +5,7 @@ from pathlib import Path import click +import duckdb import sqlalchemy as sa from pudl.metadata import PUDL_PACKAGE @@ -20,12 +21,30 @@ @click.argument( "duckdb_path", type=click.Path(resolve_path=True, writable=True, allow_dash=False) ) -def convert_parquet_to_duckdb(parquet_dir: str, duckdb_path: str): +@click.option( + "--no-load", + is_flag=True, + show_default=True, + default=False, + help="Only create metadata, don't load data.", +) +@click.option( + "--disable-fks", + is_flag=True, + show_default=True, + default=False, + help="Only create metadata, don't load data.", +) +def convert_parquet_to_duckdb( + parquet_dir: str, duckdb_path: str, no_load: bool, disable_fks: bool +): """Convert a directory of Parquet files to a DuckDB database. Args: parquet_dir: Path to a directory of parquet files. duckdb_path: Path to the new DuckDB database file (should not exist). + no_load: Only create metadata, don't load data. + disable_fks: Don't add foreign keys to the database. Example: python parquet_to_duckdb.py /path/to/parquet/directory duckdb.db @@ -44,23 +63,33 @@ def convert_parquet_to_duckdb(parquet_dir: str, duckdb_path: str): resource_ids = (r.name for r in PUDL_PACKAGE.resources if len(r.name) <= 63) package = Package.from_resource_ids(resource_ids) - metadata = package.to_sql(dialect="duckdb") + metadata = package.to_sql(dialect="duckdb", check_foreign_keys=not disable_fks) engine = sa.create_engine(f"duckdb:///{duckdb_path}") metadata.create_all(engine) - # Iterate through the tables in order of foreign key dependency - for table in metadata.sorted_tables: - parquet_file_path = parquet_dir / f"{table.name}.parquet" - logger.info(f"Loading table: {table.name} into DuckDB") - if parquet_file_path.exists(): - sql_command = f""" - COPY {table.name} FROM '{parquet_file_path}' (FORMAT PARQUET); - """ - with engine.connect() as conn: - conn.execute(sa.text(sql_command)) - else: - print("File not found: ", parquet_file_path) - # raise FileNotFoundError("Parquet file not found for: ", table.name) + if not no_load: + # Connect to DuckDB database + duckdb_conn = duckdb.connect(database=str(duckdb_path)) + duckdb_cursor = duckdb_conn.cursor() + + # Iterate through the tables in order of foreign key dependency + for table in metadata.sorted_tables: + parquet_file_path = parquet_dir / f"{table.name}.parquet" + if parquet_file_path.exists(): + logger.info(f"Loading table: {table.name} into DuckDB") + sql_command = f""" + COPY {table.name} FROM '{parquet_file_path}' (FORMAT PARQUET); + """ + logger.info(sql_command) + duckdb_cursor.execute(sql_command) + else: + logger.info("File not found: ", parquet_file_path) + # TODO: throw an error if there is a file that doesn't exist in the database + # raise FileNotFoundError("Parquet file not found for: ", table.name) + + # Commit and close connections + duckdb_conn.commit() + duckdb_conn.close() if __name__ == "__main__": diff --git a/src/pudl/metadata/classes.py b/src/pudl/metadata/classes.py index 967267ddf6..c7c0572948 100644 --- a/src/pudl/metadata/classes.py +++ b/src/pudl/metadata/classes.py @@ -1488,6 +1488,7 @@ def to_sql( metadata: sa.MetaData = None, check_types: bool = True, check_values: bool = True, + check_foreign_keys: bool = True, dialect: Literal["sqlite", "duckdb"] = "sqlite", ) -> sa.Table: """Return equivalent SQL Table.""" @@ -1504,8 +1505,9 @@ def to_sql( constraints = [] if self.schema.primary_key: constraints.append(sa.PrimaryKeyConstraint(*self.schema.primary_key)) - for key in self.schema.foreign_keys: - constraints.append(key.to_sql()) + if check_foreign_keys: + for key in self.schema.foreign_keys: + constraints.append(key.to_sql()) return sa.Table(self.name, metadata, *columns, *constraints) def to_pyarrow(self) -> pa.Schema: @@ -2039,6 +2041,7 @@ def to_sql( self, check_types: bool = True, check_values: bool = True, + check_foreign_keys: bool = True, dialect: Literal["sqlite", "duckdb"] = "sqlite", ) -> sa.MetaData: """Return equivalent SQL MetaData.""" @@ -2051,14 +2054,23 @@ def to_sql( "pk": "pk_%(table_name)s", } ) - for resource in self.resources: - if resource.create_database_schema: - _ = resource.to_sql( - metadata, - check_types=check_types, - check_values=check_values, - dialect=dialect, - ) + # Create schema for all resources in not sqlite dialect + # Filter out resources that are too big for sqlite if we're using sqlite + resources = self.resources + if dialect == "sqlite": + resources = [ + resource + for resource in self.resources + if resource.create_database_schema + ] + for resource in resources: + _ = resource.to_sql( + metadata, + check_types=check_types, + check_values=check_values, + check_foreign_keys=check_foreign_keys, + dialect=dialect, + ) return metadata def get_sorted_resources(self) -> StrictList[Resource]: From c727735e24e7ab6dcfd4d8adc00bcfb35b51098f Mon Sep 17 00:00:00 2001 From: bendnorman Date: Fri, 26 Jul 2024 12:51:20 -0800 Subject: [PATCH 06/13] Add parquet_to_duckdb cli to package and add to nightly build script --- docker/gcp_pudl_etl.sh | 11 ++ environments/conda-linux-64.lock.yml | 8 +- environments/conda-lock.yml | 102 +++++++++--------- environments/conda-osx-64.lock.yml | 8 +- environments/conda-osx-arm64.lock.yml | 8 +- pyproject.toml | 1 + .../pudl/convert}/parquet_to_duckdb.py | 32 +++--- 7 files changed, 93 insertions(+), 77 deletions(-) rename {devtools => src/pudl/convert}/parquet_to_duckdb.py (74%) diff --git a/docker/gcp_pudl_etl.sh b/docker/gcp_pudl_etl.sh index d972caa024..e24202eb92 100644 --- a/docker/gcp_pudl_etl.sh +++ b/docker/gcp_pudl_etl.sh @@ -123,6 +123,13 @@ function distribute_parquet() { fi } +function create_and_distribute_duckdb() { + echo "Creating DuckDB file from parquet files and copying it to GCS" + GCS_PATH="gs://superset.catalyst.coop" + parquet_to_duckdb "$PUDL_OUTPUT/parquet" "$PUDL_OUTPUT/pudl.duckdb" && \ + gsutil -q -m -u "$GCP_BILLING_PROJECT" cp "$PUDL_OUTPUT/pudl.duckdb" "$GCS_PATH" +} + function copy_outputs_to_distribution_bucket() { # Only attempt to update outputs if we have a real value of BUILD_REF # This avoids accidentally blowing away the whole bucket if it's not set. @@ -282,6 +289,9 @@ if [[ $ETL_SUCCESS == 0 ]]; then # Distribute Parquet outputs to a private bucket distribute_parquet 2>&1 | tee -a "$LOGFILE" DISTRIBUTE_PARQUET_SUCCESS=${PIPESTATUS[0]} + # Create duckdb file from parquet files + create_duckdb 2>&1 | tee -a "$LOGFILE" + CREATE_DUCKDB_SUCCESS=${PIPESTATUS[0]} # Remove some cruft from the builds that we don't want to distribute clean_up_outputs_for_distribution 2>&1 | tee -a "$LOGFILE" CLEAN_UP_OUTPUTS_SUCCESS=${PIPESTATUS[0]} @@ -313,6 +323,7 @@ if [[ $ETL_SUCCESS == 0 && \ $UPDATE_STABLE_SUCCESS == 0 && \ $DATASETTE_SUCCESS == 0 && \ $DISTRIBUTE_PARQUET_SUCCESS == 0 && \ + $CREATE_DUCKDB_SUCCESS == 0 && \ $CLEAN_UP_OUTPUTS_SUCCESS == 0 && \ $DISTRIBUTION_BUCKET_SUCCESS == 0 && \ $GCS_TEMPORARY_HOLD_SUCCESS == 0 && \ diff --git a/environments/conda-linux-64.lock.yml b/environments/conda-linux-64.lock.yml index 9126d3fe1c..e95df588b9 100644 --- a/environments/conda-linux-64.lock.yml +++ b/environments/conda-linux-64.lock.yml @@ -19,7 +19,7 @@ dependencies: - anyascii=0.3.2=pyhd8ed1ab_0 - anyio=4.4.0=pyhd8ed1ab_0 - appdirs=1.4.4=pyh9f0ad1d_0 - - arelle-release=2.30.13=pyhd8ed1ab_0 + - arelle-release=2.30.14=pyhd8ed1ab_0 - argon2-cffi=23.1.0=pyhd8ed1ab_0 - argon2-cffi-bindings=21.2.0=py312h98912ed_4 - arrow=1.3.0=pyhd8ed1ab_0 @@ -57,7 +57,7 @@ dependencies: - bleach=6.1.0=pyhd8ed1ab_0 - blinker=1.8.2=pyhd8ed1ab_0 - blosc=1.21.6=hef167b5_0 - - boto3=1.34.148=pyhd8ed1ab_0 + - boto3=1.34.149=pyhd8ed1ab_0 - botocore=1.34.149=pyge310_1234567_0 - bottleneck=1.4.0=py312h085067d_1 - branca=0.7.2=pyhd8ed1ab_0 @@ -94,7 +94,7 @@ dependencies: - contourpy=1.2.1=py312h8572e83_0 - coverage=7.6.0=py312h41a817b_0 - crashtest=0.4.1=pyhd8ed1ab_0 - - croniter=3.0.1=pyhd8ed1ab_0 + - croniter=3.0.3=pyhd8ed1ab_0 - cryptography=42.0.8=py312hbcc2302_0 - curl=8.9.0=h18eb788_0 - cycler=0.12.1=pyhd8ed1ab_0 @@ -531,7 +531,7 @@ dependencies: - sphinxcontrib-serializinghtml=1.1.10=pyhd8ed1ab_0 - splink=3.9.15=pyhd8ed1ab_0 - sqlalchemy=2.0.31=py312h9a8786e_0 - - sqlglot=25.6.1=pyhd8ed1ab_0 + - sqlglot=25.7.1=pyhd8ed1ab_0 - sqlite=3.46.0=h6d4b2fc_0 - sqlparse=0.5.1=pyhd8ed1ab_0 - stack_data=0.6.2=pyhd8ed1ab_0 diff --git a/environments/conda-lock.yml b/environments/conda-lock.yml index 3631ac8420..c4f94d0817 100644 --- a/environments/conda-lock.yml +++ b/environments/conda-lock.yml @@ -591,7 +591,7 @@ package: category: main optional: false - name: arelle-release - version: 2.30.13 + version: 2.30.14 manager: conda platform: linux-64 dependencies: @@ -605,14 +605,14 @@ package: python: ">=3.8" python-dateutil: 2.* regex: "" - url: https://conda.anaconda.org/conda-forge/noarch/arelle-release-2.30.13-pyhd8ed1ab_0.conda + url: https://conda.anaconda.org/conda-forge/noarch/arelle-release-2.30.14-pyhd8ed1ab_0.conda hash: - md5: 3fb67745d5ea1b4b7cbcf7dd11f309d2 - sha256: 0023d27431b37d6928342f80e5208bc156c5842c23d078b01dfa8739fe6d4e94 + md5: 62634472e44f62714ba9298322655eca + sha256: 89d3e2edc5e300116887f560451b4be3dac447ad47b178406c9176440fca4c60 category: main optional: false - name: arelle-release - version: 2.30.13 + version: 2.30.14 manager: conda platform: osx-64 dependencies: @@ -626,14 +626,14 @@ package: openpyxl: 3.* pyparsing: 3.* lxml: ">=4,<6" - url: https://conda.anaconda.org/conda-forge/noarch/arelle-release-2.30.13-pyhd8ed1ab_0.conda + url: https://conda.anaconda.org/conda-forge/noarch/arelle-release-2.30.14-pyhd8ed1ab_0.conda hash: - md5: 3fb67745d5ea1b4b7cbcf7dd11f309d2 - sha256: 0023d27431b37d6928342f80e5208bc156c5842c23d078b01dfa8739fe6d4e94 + md5: 62634472e44f62714ba9298322655eca + sha256: 89d3e2edc5e300116887f560451b4be3dac447ad47b178406c9176440fca4c60 category: main optional: false - name: arelle-release - version: 2.30.13 + version: 2.30.14 manager: conda platform: osx-arm64 dependencies: @@ -647,10 +647,10 @@ package: openpyxl: 3.* pyparsing: 3.* lxml: ">=4,<6" - url: https://conda.anaconda.org/conda-forge/noarch/arelle-release-2.30.13-pyhd8ed1ab_0.conda + url: https://conda.anaconda.org/conda-forge/noarch/arelle-release-2.30.14-pyhd8ed1ab_0.conda hash: - md5: 3fb67745d5ea1b4b7cbcf7dd11f309d2 - sha256: 0023d27431b37d6928342f80e5208bc156c5842c23d078b01dfa8739fe6d4e94 + md5: 62634472e44f62714ba9298322655eca + sha256: 89d3e2edc5e300116887f560451b4be3dac447ad47b178406c9176440fca4c60 category: main optional: false - name: argon2-cffi @@ -2275,48 +2275,48 @@ package: category: main optional: false - name: boto3 - version: 1.34.148 + version: 1.34.149 manager: conda platform: linux-64 dependencies: - botocore: ">=1.34.148,<1.35.0" + botocore: ">=1.34.149,<1.35.0" jmespath: ">=0.7.1,<2.0.0" python: ">=3.8" s3transfer: ">=0.10.0,<0.11.0" - url: https://conda.anaconda.org/conda-forge/noarch/boto3-1.34.148-pyhd8ed1ab_0.conda + url: https://conda.anaconda.org/conda-forge/noarch/boto3-1.34.149-pyhd8ed1ab_0.conda hash: - md5: c1fab78c52155e81112f58c17b0be12d - sha256: 9f80875572f232b742664f0e516883eae0486b64eceac3384c6dc2bf6b0ad60d + md5: b2a4de6bf5e8fd118e686fec75527b37 + sha256: b4f2aa23ae8a3147216e63d51bc689496688ea73479172803fab4a088f54fc2a category: main optional: false - name: boto3 - version: 1.34.148 + version: 1.34.149 manager: conda platform: osx-64 dependencies: python: ">=3.8" jmespath: ">=0.7.1,<2.0.0" s3transfer: ">=0.10.0,<0.11.0" - botocore: ">=1.34.148,<1.35.0" - url: https://conda.anaconda.org/conda-forge/noarch/boto3-1.34.148-pyhd8ed1ab_0.conda + botocore: ">=1.34.149,<1.35.0" + url: https://conda.anaconda.org/conda-forge/noarch/boto3-1.34.149-pyhd8ed1ab_0.conda hash: - md5: c1fab78c52155e81112f58c17b0be12d - sha256: 9f80875572f232b742664f0e516883eae0486b64eceac3384c6dc2bf6b0ad60d + md5: b2a4de6bf5e8fd118e686fec75527b37 + sha256: b4f2aa23ae8a3147216e63d51bc689496688ea73479172803fab4a088f54fc2a category: main optional: false - name: boto3 - version: 1.34.148 + version: 1.34.149 manager: conda platform: osx-arm64 dependencies: python: ">=3.8" jmespath: ">=0.7.1,<2.0.0" s3transfer: ">=0.10.0,<0.11.0" - botocore: ">=1.34.148,<1.35.0" - url: https://conda.anaconda.org/conda-forge/noarch/boto3-1.34.148-pyhd8ed1ab_0.conda + botocore: ">=1.34.149,<1.35.0" + url: https://conda.anaconda.org/conda-forge/noarch/boto3-1.34.149-pyhd8ed1ab_0.conda hash: - md5: c1fab78c52155e81112f58c17b0be12d - sha256: 9f80875572f232b742664f0e516883eae0486b64eceac3384c6dc2bf6b0ad60d + md5: b2a4de6bf5e8fd118e686fec75527b37 + sha256: b4f2aa23ae8a3147216e63d51bc689496688ea73479172803fab4a088f54fc2a category: main optional: false - name: botocore @@ -3879,45 +3879,45 @@ package: category: main optional: false - name: croniter - version: 3.0.1 + version: 3.0.3 manager: conda platform: linux-64 dependencies: python: ">=3.7" python-dateutil: "" pytz: ">2021.1" - url: https://conda.anaconda.org/conda-forge/noarch/croniter-3.0.1-pyhd8ed1ab_0.conda + url: https://conda.anaconda.org/conda-forge/noarch/croniter-3.0.3-pyhd8ed1ab_0.conda hash: - md5: cc3e196f8958fdf14249e21fe9faf580 - sha256: 2f485ebdeb0394e6557c01ddf7eda38f473aa1a5c8b056817010495fd2785004 + md5: 937954ebd1d954d4661343762a42e2a6 + sha256: 6f51ba947834278aa403509a3c9d066f38c03a5387645d054e022cef5c9d9e0f category: main optional: false - name: croniter - version: 3.0.1 + version: 3.0.3 manager: conda platform: osx-64 dependencies: python-dateutil: "" python: ">=3.7" pytz: ">2021.1" - url: https://conda.anaconda.org/conda-forge/noarch/croniter-3.0.1-pyhd8ed1ab_0.conda + url: https://conda.anaconda.org/conda-forge/noarch/croniter-3.0.3-pyhd8ed1ab_0.conda hash: - md5: cc3e196f8958fdf14249e21fe9faf580 - sha256: 2f485ebdeb0394e6557c01ddf7eda38f473aa1a5c8b056817010495fd2785004 + md5: 937954ebd1d954d4661343762a42e2a6 + sha256: 6f51ba947834278aa403509a3c9d066f38c03a5387645d054e022cef5c9d9e0f category: main optional: false - name: croniter - version: 3.0.1 + version: 3.0.3 manager: conda platform: osx-arm64 dependencies: python-dateutil: "" python: ">=3.7" pytz: ">2021.1" - url: https://conda.anaconda.org/conda-forge/noarch/croniter-3.0.1-pyhd8ed1ab_0.conda + url: https://conda.anaconda.org/conda-forge/noarch/croniter-3.0.3-pyhd8ed1ab_0.conda hash: - md5: cc3e196f8958fdf14249e21fe9faf580 - sha256: 2f485ebdeb0394e6557c01ddf7eda38f473aa1a5c8b056817010495fd2785004 + md5: 937954ebd1d954d4661343762a42e2a6 + sha256: 6f51ba947834278aa403509a3c9d066f38c03a5387645d054e022cef5c9d9e0f category: main optional: false - name: cryptography @@ -23232,39 +23232,39 @@ package: category: main optional: false - name: sqlglot - version: 25.6.1 + version: 25.7.1 manager: conda platform: linux-64 dependencies: python: ">=3.7" - url: https://conda.anaconda.org/conda-forge/noarch/sqlglot-25.6.1-pyhd8ed1ab_0.conda + url: https://conda.anaconda.org/conda-forge/noarch/sqlglot-25.7.1-pyhd8ed1ab_0.conda hash: - md5: a10af16d1d51e76c13ca7106d1e62749 - sha256: 563c551e5e6e9203f3a7aa6f7c33478f249e5b0f9beafa23cd9e12ece2daee92 + md5: 6636eaa707da0830508e61019e6bd6c7 + sha256: 2d3c804c7a77b1a43ac67403871570b1d28e9ab62bd362c8c2706a5be3edb32e category: main optional: false - name: sqlglot - version: 25.6.1 + version: 25.7.1 manager: conda platform: osx-64 dependencies: python: ">=3.7" - url: https://conda.anaconda.org/conda-forge/noarch/sqlglot-25.6.1-pyhd8ed1ab_0.conda + url: https://conda.anaconda.org/conda-forge/noarch/sqlglot-25.7.1-pyhd8ed1ab_0.conda hash: - md5: a10af16d1d51e76c13ca7106d1e62749 - sha256: 563c551e5e6e9203f3a7aa6f7c33478f249e5b0f9beafa23cd9e12ece2daee92 + md5: 6636eaa707da0830508e61019e6bd6c7 + sha256: 2d3c804c7a77b1a43ac67403871570b1d28e9ab62bd362c8c2706a5be3edb32e category: main optional: false - name: sqlglot - version: 25.6.1 + version: 25.7.1 manager: conda platform: osx-arm64 dependencies: python: ">=3.7" - url: https://conda.anaconda.org/conda-forge/noarch/sqlglot-25.6.1-pyhd8ed1ab_0.conda + url: https://conda.anaconda.org/conda-forge/noarch/sqlglot-25.7.1-pyhd8ed1ab_0.conda hash: - md5: a10af16d1d51e76c13ca7106d1e62749 - sha256: 563c551e5e6e9203f3a7aa6f7c33478f249e5b0f9beafa23cd9e12ece2daee92 + md5: 6636eaa707da0830508e61019e6bd6c7 + sha256: 2d3c804c7a77b1a43ac67403871570b1d28e9ab62bd362c8c2706a5be3edb32e category: main optional: false - name: sqlite diff --git a/environments/conda-osx-64.lock.yml b/environments/conda-osx-64.lock.yml index e9d05e8801..f82a4b15e6 100644 --- a/environments/conda-osx-64.lock.yml +++ b/environments/conda-osx-64.lock.yml @@ -18,7 +18,7 @@ dependencies: - anyio=4.4.0=pyhd8ed1ab_0 - appdirs=1.4.4=pyh9f0ad1d_0 - appnope=0.1.4=pyhd8ed1ab_0 - - arelle-release=2.30.13=pyhd8ed1ab_0 + - arelle-release=2.30.14=pyhd8ed1ab_0 - argon2-cffi=23.1.0=pyhd8ed1ab_0 - argon2-cffi-bindings=21.2.0=py312h104f124_4 - arrow=1.3.0=pyhd8ed1ab_0 @@ -56,7 +56,7 @@ dependencies: - bleach=6.1.0=pyhd8ed1ab_0 - blinker=1.8.2=pyhd8ed1ab_0 - blosc=1.21.6=h7d75f6d_0 - - boto3=1.34.148=pyhd8ed1ab_0 + - boto3=1.34.149=pyhd8ed1ab_0 - botocore=1.34.149=pyge310_1234567_0 - bottleneck=1.4.0=py312h5dc8b90_1 - branca=0.7.2=pyhd8ed1ab_0 @@ -93,7 +93,7 @@ dependencies: - contourpy=1.2.1=py312h9230928_0 - coverage=7.6.0=py312hbd25219_0 - crashtest=0.4.1=pyhd8ed1ab_0 - - croniter=3.0.1=pyhd8ed1ab_0 + - croniter=3.0.3=pyhd8ed1ab_0 - cryptography=42.0.8=py312h7e81a9d_0 - curl=8.9.0=hcd6fca1_0 - cycler=0.12.1=pyhd8ed1ab_0 @@ -520,7 +520,7 @@ dependencies: - sphinxcontrib-serializinghtml=1.1.10=pyhd8ed1ab_0 - splink=3.9.15=pyhd8ed1ab_0 - sqlalchemy=2.0.31=py312hbd25219_0 - - sqlglot=25.6.1=pyhd8ed1ab_0 + - sqlglot=25.7.1=pyhd8ed1ab_0 - sqlite=3.46.0=h28673e1_0 - sqlparse=0.5.1=pyhd8ed1ab_0 - stack_data=0.6.2=pyhd8ed1ab_0 diff --git a/environments/conda-osx-arm64.lock.yml b/environments/conda-osx-arm64.lock.yml index abe37612d7..e8336cee54 100644 --- a/environments/conda-osx-arm64.lock.yml +++ b/environments/conda-osx-arm64.lock.yml @@ -18,7 +18,7 @@ dependencies: - anyio=4.4.0=pyhd8ed1ab_0 - appdirs=1.4.4=pyh9f0ad1d_0 - appnope=0.1.4=pyhd8ed1ab_0 - - arelle-release=2.30.13=pyhd8ed1ab_0 + - arelle-release=2.30.14=pyhd8ed1ab_0 - argon2-cffi=23.1.0=pyhd8ed1ab_0 - argon2-cffi-bindings=21.2.0=py312h02f2b3b_4 - arrow=1.3.0=pyhd8ed1ab_0 @@ -56,7 +56,7 @@ dependencies: - bleach=6.1.0=pyhd8ed1ab_0 - blinker=1.8.2=pyhd8ed1ab_0 - blosc=1.21.6=h5499902_0 - - boto3=1.34.148=pyhd8ed1ab_0 + - boto3=1.34.149=pyhd8ed1ab_0 - botocore=1.34.149=pyge310_1234567_0 - bottleneck=1.4.0=py312hbebd99a_1 - branca=0.7.2=pyhd8ed1ab_0 @@ -93,7 +93,7 @@ dependencies: - contourpy=1.2.1=py312h0fef576_0 - coverage=7.6.0=py312h7e5086c_0 - crashtest=0.4.1=pyhd8ed1ab_0 - - croniter=3.0.1=pyhd8ed1ab_0 + - croniter=3.0.3=pyhd8ed1ab_0 - cryptography=42.0.8=py312had01cb0_0 - curl=8.9.0=hbf5303f_0 - cycler=0.12.1=pyhd8ed1ab_0 @@ -520,7 +520,7 @@ dependencies: - sphinxcontrib-serializinghtml=1.1.10=pyhd8ed1ab_0 - splink=3.9.15=pyhd8ed1ab_0 - sqlalchemy=2.0.31=py312h7e5086c_0 - - sqlglot=25.6.1=pyhd8ed1ab_0 + - sqlglot=25.7.1=pyhd8ed1ab_0 - sqlite=3.46.0=h5838104_0 - sqlparse=0.5.1=pyhd8ed1ab_0 - stack_data=0.6.2=pyhd8ed1ab_0 diff --git a/pyproject.toml b/pyproject.toml index 405a9aea2d..60789982c3 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -130,6 +130,7 @@ keywords = [ [project.scripts] ferc_to_sqlite = "pudl.ferc_to_sqlite.cli:main" metadata_to_rst = "pudl.convert.metadata_to_rst:metadata_to_rst" +parquet_to_duckdb = "pudl.convert.parquet_to_duckdb:parquet_to_duckdb" pudl_check_fks = "pudl.etl.check_foreign_keys:pudl_check_fks" pudl_datastore = "pudl.workspace.datastore:pudl_datastore" pudl_etl = "pudl.etl.cli:pudl_etl" diff --git a/devtools/parquet_to_duckdb.py b/src/pudl/convert/parquet_to_duckdb.py similarity index 74% rename from devtools/parquet_to_duckdb.py rename to src/pudl/convert/parquet_to_duckdb.py index 91cee4f219..673dde963c 100755 --- a/devtools/parquet_to_duckdb.py +++ b/src/pudl/convert/parquet_to_duckdb.py @@ -16,7 +16,10 @@ logger = logging.getLogger(__name__) -@click.command() +@click.command( + name="parquet_to_duckdb", + context_settings={"help_option_names": ["-h", "--help"]}, +) @click.argument("parquet_dir", type=click.Path(exists=True, resolve_path=True)) @click.argument( "duckdb_path", type=click.Path(resolve_path=True, writable=True, allow_dash=False) @@ -29,14 +32,15 @@ help="Only create metadata, don't load data.", ) @click.option( - "--disable-fks", + "--check-fks", is_flag=True, show_default=True, default=False, - help="Only create metadata, don't load data.", + help="If true, enable foreign keys in the database. Currently," + "the parquet load process freezes up when foreign keys are enabled.", ) -def convert_parquet_to_duckdb( - parquet_dir: str, duckdb_path: str, no_load: bool, disable_fks: bool +def parquet_to_duckdb( + parquet_dir: str, duckdb_path: str, no_load: bool, check_fks: bool ): """Convert a directory of Parquet files to a DuckDB database. @@ -44,10 +48,11 @@ def convert_parquet_to_duckdb( parquet_dir: Path to a directory of parquet files. duckdb_path: Path to the new DuckDB database file (should not exist). no_load: Only create metadata, don't load data. - disable_fks: Don't add foreign keys to the database. + check_fks: If true, enable foreign keys in the database. Currently, + the parquet load process freezes up when foreign keys are enabled. Example: - python parquet_to_duckdb.py /path/to/parquet/directory duckdb.db + parquet_to_duckdb /path/to/parquet/directory duckdb.db """ parquet_dir = Path(parquet_dir) duckdb_path = Path(duckdb_path) @@ -63,7 +68,7 @@ def convert_parquet_to_duckdb( resource_ids = (r.name for r in PUDL_PACKAGE.resources if len(r.name) <= 63) package = Package.from_resource_ids(resource_ids) - metadata = package.to_sql(dialect="duckdb", check_foreign_keys=not disable_fks) + metadata = package.to_sql(dialect="duckdb", check_foreign_keys=check_fks) engine = sa.create_engine(f"duckdb:///{duckdb_path}") metadata.create_all(engine) @@ -76,16 +81,15 @@ def convert_parquet_to_duckdb( for table in metadata.sorted_tables: parquet_file_path = parquet_dir / f"{table.name}.parquet" if parquet_file_path.exists(): - logger.info(f"Loading table: {table.name} into DuckDB") + logger.info( + f"Loading parquet file: {parquet_file_path} into {duckdb_path}" + ) sql_command = f""" COPY {table.name} FROM '{parquet_file_path}' (FORMAT PARQUET); """ - logger.info(sql_command) duckdb_cursor.execute(sql_command) else: - logger.info("File not found: ", parquet_file_path) - # TODO: throw an error if there is a file that doesn't exist in the database - # raise FileNotFoundError("Parquet file not found for: ", table.name) + raise FileNotFoundError("Parquet file not found for: ", table.name) # Commit and close connections duckdb_conn.commit() @@ -93,4 +97,4 @@ def convert_parquet_to_duckdb( if __name__ == "__main__": - convert_parquet_to_duckdb() + parquet_to_duckdb() From 7344506de6875c4d283fa3dc9095c257186ec84b Mon Sep 17 00:00:00 2001 From: Zane Selvans Date: Sat, 27 Jul 2024 12:57:41 -0600 Subject: [PATCH 07/13] Update conda lockfiles after merging main. --- environments/conda-linux-64.lock.yml | 12 +- environments/conda-lock.yml | 175 +++++++++++++------------- environments/conda-osx-64.lock.yml | 12 +- environments/conda-osx-arm64.lock.yml | 12 +- 4 files changed, 104 insertions(+), 107 deletions(-) diff --git a/environments/conda-linux-64.lock.yml b/environments/conda-linux-64.lock.yml index e95df588b9..b46a348030 100644 --- a/environments/conda-linux-64.lock.yml +++ b/environments/conda-linux-64.lock.yml @@ -1,6 +1,6 @@ # Generated by conda-lock. # platform: linux-64 -# input_hash: 04db4cd46f6afba017de12d97a6d542af9569fbcc183f42a4d67df0644004a94 +# input_hash: fa48664f832b32fb654780c59376ac0a048b749ef3452828bfbe040c8a2014c3 channels: - conda-forge @@ -98,11 +98,11 @@ dependencies: - cryptography=42.0.8=py312hbcc2302_0 - curl=8.9.0=h18eb788_0 - cycler=0.12.1=pyhd8ed1ab_0 - - dagster=1.7.12=pyhd8ed1ab_12 - - dagster-graphql=1.7.12=pyhd8ed1ab_0 - - dagster-pipes=1.7.12=pyhd8ed1ab_0 - - dagster-postgres=0.23.12=pyhd8ed1ab_0 - - dagster-webserver=1.7.12=pyhd8ed1ab_0 + - dagster=1.7.15=pyhd8ed1ab_12 + - dagster-graphql=1.7.15=pyhd8ed1ab_0 + - dagster-pipes=1.7.15=pyhd8ed1ab_0 + - dagster-postgres=0.23.15=pyhd8ed1ab_0 + - dagster-webserver=1.7.15=pyhd8ed1ab_0 - dask-core=2024.7.1=pyhd8ed1ab_0 - dask-expr=1.1.9=pyhd8ed1ab_0 - dataclasses=0.8=pyhc8e2a94_3 diff --git a/environments/conda-lock.yml b/environments/conda-lock.yml index c4f94d0817..cddb774ba8 100644 --- a/environments/conda-lock.yml +++ b/environments/conda-lock.yml @@ -15,9 +15,9 @@ version: 1 metadata: content_hash: - linux-64: 04db4cd46f6afba017de12d97a6d542af9569fbcc183f42a4d67df0644004a94 - osx-64: 1a525e687eb2b65f22b828b82b191e9810998d86415b1f57cb26411f3a340de0 - osx-arm64: f5486d282d7491605261d9fa8ee30642f2208e7c34a01be35fcea81fc65c3a99 + linux-64: fa48664f832b32fb654780c59376ac0a048b749ef3452828bfbe040c8a2014c3 + osx-64: 0752354895cda330b7c0fcd78627b152655102540955085b143cb23fea2ca91f + osx-arm64: effba85c5b26f2821212c86be51fddc01fc2ab83df27e4d133d81de327e4f153 channels: - url: conda-forge used_env_vars: [] @@ -4060,7 +4060,7 @@ package: category: main optional: false - name: dagster - version: 1.7.12 + version: 1.7.15 manager: conda platform: linux-64 dependencies: @@ -4068,11 +4068,11 @@ package: click: ">=5.0" coloredlogs: ">=6.1,<=14.0" croniter: ">=0.3.34" - dagster-pipes: ">=1.7.12,<1.7.13.0a0" + dagster-pipes: ">=1.7.15,<1.7.16.0a0" docstring_parser: "" filelock: "" - grpcio: ">=1.44.0" - grpcio-health-checking: ">=1.44.0" + grpcio: ">=1.44.0,<1.65.0" + grpcio-health-checking: ">=1.44.0,<1.65.0" jinja2: "" packaging: ">=20.9" pendulum: ">=3,<4" @@ -4080,7 +4080,6 @@ package: psutil: ">=1.0" pydantic: ">1.10.0,!=1.10.7,<3" python: ">=3.8" - python-dateutil: "" python-dotenv: "" pytz: "" pywin32-on-windows: "" @@ -4097,29 +4096,28 @@ package: typing_extensions: ">=4.4.0,<5" universal_pathlib: ">=0.2.0" watchdog: ">=0.8.3" - url: https://conda.anaconda.org/conda-forge/noarch/dagster-1.7.12-pyhd8ed1ab_12.conda + url: https://conda.anaconda.org/conda-forge/noarch/dagster-1.7.15-pyhd8ed1ab_12.conda hash: - md5: 635aade2894636b939b962a52b3d4d7f - sha256: 39511d2cf0fae891b7e4e003b94ab4bbd404549cd4f72262e89c3afcc59ba99a + md5: 7097481e35fe7ce2200cac34dcc19b44 + sha256: 601f5fa0df8a172339e3fa4986924ba90d103a8d7802489486f70b4ae42cb202 category: main optional: false - name: dagster - version: 1.7.12 + version: 1.7.15 manager: conda platform: osx-64 dependencies: requests: "" setuptools: "" jinja2: "" - python-dateutil: "" pytz: "" rich: "" tabulate: "" filelock: "" python-dotenv: "" pywin32-on-windows: "" - docstring_parser: "" structlog: "" + docstring_parser: "" python: ">=3.8" pyyaml: ">=5.1" packaging: ">=20.9" @@ -4129,8 +4127,6 @@ package: croniter: ">=0.3.34" toposort: ">=1.0" psutil: ">=1.0" - grpcio-health-checking: ">=1.44.0" - grpcio: ">=1.44.0" alembic: ">=1.2.1,!=1.6.3,!=1.7.0,!=1.11.0" typing_extensions: ">=4.4.0,<5" pydantic: ">1.10.0,!=1.10.7,<3" @@ -4140,30 +4136,31 @@ package: protobuf: ">=4,<5" pendulum: ">=3,<4" universal_pathlib: ">=0.2.0" - dagster-pipes: ">=1.7.12,<1.7.13.0a0" - url: https://conda.anaconda.org/conda-forge/noarch/dagster-1.7.12-pyhd8ed1ab_12.conda + grpcio: ">=1.44.0,<1.65.0" + grpcio-health-checking: ">=1.44.0,<1.65.0" + dagster-pipes: ">=1.7.15,<1.7.16.0a0" + url: https://conda.anaconda.org/conda-forge/noarch/dagster-1.7.15-pyhd8ed1ab_12.conda hash: - md5: 635aade2894636b939b962a52b3d4d7f - sha256: 39511d2cf0fae891b7e4e003b94ab4bbd404549cd4f72262e89c3afcc59ba99a + md5: 7097481e35fe7ce2200cac34dcc19b44 + sha256: 601f5fa0df8a172339e3fa4986924ba90d103a8d7802489486f70b4ae42cb202 category: main optional: false - name: dagster - version: 1.7.12 + version: 1.7.15 manager: conda platform: osx-arm64 dependencies: requests: "" setuptools: "" jinja2: "" - python-dateutil: "" pytz: "" rich: "" tabulate: "" filelock: "" python-dotenv: "" pywin32-on-windows: "" - docstring_parser: "" structlog: "" + docstring_parser: "" python: ">=3.8" pyyaml: ">=5.1" packaging: ">=20.9" @@ -4173,8 +4170,6 @@ package: croniter: ">=0.3.34" toposort: ">=1.0" psutil: ">=1.0" - grpcio-health-checking: ">=1.44.0" - grpcio: ">=1.44.0" alembic: ">=1.2.1,!=1.6.3,!=1.7.0,!=1.11.0" typing_extensions: ">=4.4.0,<5" pydantic: ">1.10.0,!=1.10.7,<3" @@ -4184,32 +4179,34 @@ package: protobuf: ">=4,<5" pendulum: ">=3,<4" universal_pathlib: ">=0.2.0" - dagster-pipes: ">=1.7.12,<1.7.13.0a0" - url: https://conda.anaconda.org/conda-forge/noarch/dagster-1.7.12-pyhd8ed1ab_12.conda + grpcio: ">=1.44.0,<1.65.0" + grpcio-health-checking: ">=1.44.0,<1.65.0" + dagster-pipes: ">=1.7.15,<1.7.16.0a0" + url: https://conda.anaconda.org/conda-forge/noarch/dagster-1.7.15-pyhd8ed1ab_12.conda hash: - md5: 635aade2894636b939b962a52b3d4d7f - sha256: 39511d2cf0fae891b7e4e003b94ab4bbd404549cd4f72262e89c3afcc59ba99a + md5: 7097481e35fe7ce2200cac34dcc19b44 + sha256: 601f5fa0df8a172339e3fa4986924ba90d103a8d7802489486f70b4ae42cb202 category: main optional: false - name: dagster-graphql - version: 1.7.12 + version: 1.7.15 manager: conda platform: linux-64 dependencies: - dagster: ">=1.7.12,<1.7.13.0a0" + dagster: ">=1.7.15,<1.7.16.0a0" gql-with-requests: ">=3.0.0,<4.0.0" graphene: ">=3,<4" python: ">=3.8" requests: "" starlette: "" - url: https://conda.anaconda.org/conda-forge/noarch/dagster-graphql-1.7.12-pyhd8ed1ab_0.conda + url: https://conda.anaconda.org/conda-forge/noarch/dagster-graphql-1.7.15-pyhd8ed1ab_0.conda hash: - md5: f8ea77160a345f402e05aed02a8e71b1 - sha256: c95194d3cbf3e59f1f7360286588fc71b1229ca4c753e0a79f0a8c72088a54a7 + md5: fbf10ac0e9226e50f649833f1e8ea6e3 + sha256: 3381e144eb01ab6ac7eba93298667649c955c403cf644734c20cf7e3f612d866 category: dev optional: true - name: dagster-graphql - version: 1.7.12 + version: 1.7.15 manager: conda platform: osx-64 dependencies: @@ -4218,15 +4215,15 @@ package: python: ">=3.8" gql-with-requests: ">=3.0.0,<4.0.0" graphene: ">=3,<4" - dagster: ">=1.7.12,<1.7.13.0a0" - url: https://conda.anaconda.org/conda-forge/noarch/dagster-graphql-1.7.12-pyhd8ed1ab_0.conda + dagster: ">=1.7.15,<1.7.16.0a0" + url: https://conda.anaconda.org/conda-forge/noarch/dagster-graphql-1.7.15-pyhd8ed1ab_0.conda hash: - md5: f8ea77160a345f402e05aed02a8e71b1 - sha256: c95194d3cbf3e59f1f7360286588fc71b1229ca4c753e0a79f0a8c72088a54a7 + md5: fbf10ac0e9226e50f649833f1e8ea6e3 + sha256: 3381e144eb01ab6ac7eba93298667649c955c403cf644734c20cf7e3f612d866 category: dev optional: true - name: dagster-graphql - version: 1.7.12 + version: 1.7.15 manager: conda platform: osx-arm64 dependencies: @@ -4235,110 +4232,110 @@ package: python: ">=3.8" gql-with-requests: ">=3.0.0,<4.0.0" graphene: ">=3,<4" - dagster: ">=1.7.12,<1.7.13.0a0" - url: https://conda.anaconda.org/conda-forge/noarch/dagster-graphql-1.7.12-pyhd8ed1ab_0.conda + dagster: ">=1.7.15,<1.7.16.0a0" + url: https://conda.anaconda.org/conda-forge/noarch/dagster-graphql-1.7.15-pyhd8ed1ab_0.conda hash: - md5: f8ea77160a345f402e05aed02a8e71b1 - sha256: c95194d3cbf3e59f1f7360286588fc71b1229ca4c753e0a79f0a8c72088a54a7 + md5: fbf10ac0e9226e50f649833f1e8ea6e3 + sha256: 3381e144eb01ab6ac7eba93298667649c955c403cf644734c20cf7e3f612d866 category: dev optional: true - name: dagster-pipes - 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name: dagster-pipes - version: 1.7.12 + version: 1.7.15 manager: conda platform: osx-arm64 dependencies: python: ">=3.8" - url: https://conda.anaconda.org/conda-forge/noarch/dagster-pipes-1.7.12-pyhd8ed1ab_0.conda + url: https://conda.anaconda.org/conda-forge/noarch/dagster-pipes-1.7.15-pyhd8ed1ab_0.conda hash: - md5: 2d1559ef54c3b5413d18fb122ee5b54b - sha256: fc1c8e750dddd7df03d8f501fe9ea0d34d1f9673ea263ff6008d295cb3182eb1 + md5: 6ef390a9f4727bad7a4b355915cca1d6 + sha256: 9e4b93ec24a091ba48c2aa393f270f3903d9bad0750dd1b1f5f52eeb4641cb83 category: main optional: false - name: dagster-postgres - version: 0.23.12 + version: 0.23.15 manager: conda platform: linux-64 dependencies: - dagster: 1.7.12.* + dagster: 1.7.15.* psycopg2-binary: "" python: ">=3.8" - url: https://conda.anaconda.org/conda-forge/noarch/dagster-postgres-0.23.12-pyhd8ed1ab_0.conda + url: https://conda.anaconda.org/conda-forge/noarch/dagster-postgres-0.23.15-pyhd8ed1ab_0.conda hash: - md5: 8553720e2245e16223d6134a8220c8bd - sha256: fd296080dc98882279a19f499f8587b8e4cf7aa944df11eba53bed0fbdd6d8e7 + md5: 4a6383c15190a503732bb76f36616e1b + sha256: 201c10ad37253a8cb326b09d74d99f678ac809ec25be1f2e55cfe0d6b370a2f2 category: main optional: false - name: dagster-postgres - version: 0.23.12 + version: 0.23.15 manager: conda platform: osx-64 dependencies: psycopg2-binary: "" python: ">=3.8" - dagster: 1.7.12.* - url: https://conda.anaconda.org/conda-forge/noarch/dagster-postgres-0.23.12-pyhd8ed1ab_0.conda + dagster: 1.7.15.* + url: https://conda.anaconda.org/conda-forge/noarch/dagster-postgres-0.23.15-pyhd8ed1ab_0.conda hash: - md5: 8553720e2245e16223d6134a8220c8bd - sha256: fd296080dc98882279a19f499f8587b8e4cf7aa944df11eba53bed0fbdd6d8e7 + md5: 4a6383c15190a503732bb76f36616e1b + sha256: 201c10ad37253a8cb326b09d74d99f678ac809ec25be1f2e55cfe0d6b370a2f2 category: main optional: false - name: dagster-postgres - version: 0.23.12 + version: 0.23.15 manager: conda platform: osx-arm64 dependencies: psycopg2-binary: "" python: ">=3.8" - dagster: 1.7.12.* - url: https://conda.anaconda.org/conda-forge/noarch/dagster-postgres-0.23.12-pyhd8ed1ab_0.conda + dagster: 1.7.15.* + url: https://conda.anaconda.org/conda-forge/noarch/dagster-postgres-0.23.15-pyhd8ed1ab_0.conda hash: - md5: 8553720e2245e16223d6134a8220c8bd - sha256: fd296080dc98882279a19f499f8587b8e4cf7aa944df11eba53bed0fbdd6d8e7 + md5: 4a6383c15190a503732bb76f36616e1b + sha256: 201c10ad37253a8cb326b09d74d99f678ac809ec25be1f2e55cfe0d6b370a2f2 category: main optional: false - name: dagster-webserver - version: 1.7.12 + version: 1.7.15 manager: conda platform: linux-64 dependencies: click: ">=7.0,<9.0" - dagster: ">=1.7.12,<1.7.13.0a0" - dagster-graphql: ">=1.7.12,<1.7.13.0a0" + dagster: ">=1.7.15,<1.7.16.0a0" + dagster-graphql: ">=1.7.15,<1.7.16.0a0" python: ">=3.8" starlette: "!=0.36.0" uvicorn-standard: "" - url: https://conda.anaconda.org/conda-forge/noarch/dagster-webserver-1.7.12-pyhd8ed1ab_0.conda + url: https://conda.anaconda.org/conda-forge/noarch/dagster-webserver-1.7.15-pyhd8ed1ab_0.conda hash: - md5: d5112952c6d7380b44d993da7860bd15 - sha256: 95fd34503835560325ac938c038604a2719cf17c74d5124de6bfe9f12103cbcf + md5: 8673fe508427e592f92074481d7ded0b + sha256: e68c32c9d1865d3ad6720b3876bcb05528f272589bbdd26d478fa8e3943588db category: dev optional: true - name: dagster-webserver - version: 1.7.12 + version: 1.7.15 manager: conda platform: osx-64 dependencies: @@ -4346,16 +4343,16 @@ package: python: ">=3.8" click: ">=7.0,<9.0" starlette: "!=0.36.0" - dagster: ">=1.7.12,<1.7.13.0a0" - dagster-graphql: ">=1.7.12,<1.7.13.0a0" - url: https://conda.anaconda.org/conda-forge/noarch/dagster-webserver-1.7.12-pyhd8ed1ab_0.conda + dagster: ">=1.7.15,<1.7.16.0a0" + dagster-graphql: ">=1.7.15,<1.7.16.0a0" + url: https://conda.anaconda.org/conda-forge/noarch/dagster-webserver-1.7.15-pyhd8ed1ab_0.conda hash: - md5: d5112952c6d7380b44d993da7860bd15 - sha256: 95fd34503835560325ac938c038604a2719cf17c74d5124de6bfe9f12103cbcf + md5: 8673fe508427e592f92074481d7ded0b + sha256: e68c32c9d1865d3ad6720b3876bcb05528f272589bbdd26d478fa8e3943588db category: dev optional: true - name: dagster-webserver - version: 1.7.12 + version: 1.7.15 manager: conda platform: osx-arm64 dependencies: @@ -4363,12 +4360,12 @@ package: python: ">=3.8" click: ">=7.0,<9.0" starlette: "!=0.36.0" - dagster: ">=1.7.12,<1.7.13.0a0" - dagster-graphql: ">=1.7.12,<1.7.13.0a0" - url: https://conda.anaconda.org/conda-forge/noarch/dagster-webserver-1.7.12-pyhd8ed1ab_0.conda + dagster: ">=1.7.15,<1.7.16.0a0" + dagster-graphql: ">=1.7.15,<1.7.16.0a0" + url: https://conda.anaconda.org/conda-forge/noarch/dagster-webserver-1.7.15-pyhd8ed1ab_0.conda hash: - md5: d5112952c6d7380b44d993da7860bd15 - sha256: 95fd34503835560325ac938c038604a2719cf17c74d5124de6bfe9f12103cbcf + md5: 8673fe508427e592f92074481d7ded0b + sha256: e68c32c9d1865d3ad6720b3876bcb05528f272589bbdd26d478fa8e3943588db category: dev optional: true - name: dask-core diff --git a/environments/conda-osx-64.lock.yml b/environments/conda-osx-64.lock.yml index f82a4b15e6..7dbd68fb23 100644 --- a/environments/conda-osx-64.lock.yml +++ b/environments/conda-osx-64.lock.yml @@ -1,6 +1,6 @@ # Generated by conda-lock. # platform: osx-64 -# input_hash: 1a525e687eb2b65f22b828b82b191e9810998d86415b1f57cb26411f3a340de0 +# input_hash: 0752354895cda330b7c0fcd78627b152655102540955085b143cb23fea2ca91f channels: - conda-forge @@ -97,11 +97,11 @@ dependencies: - cryptography=42.0.8=py312h7e81a9d_0 - curl=8.9.0=hcd6fca1_0 - cycler=0.12.1=pyhd8ed1ab_0 - - dagster=1.7.12=pyhd8ed1ab_12 - - dagster-graphql=1.7.12=pyhd8ed1ab_0 - - dagster-pipes=1.7.12=pyhd8ed1ab_0 - - dagster-postgres=0.23.12=pyhd8ed1ab_0 - - dagster-webserver=1.7.12=pyhd8ed1ab_0 + - dagster=1.7.15=pyhd8ed1ab_12 + - dagster-graphql=1.7.15=pyhd8ed1ab_0 + - dagster-pipes=1.7.15=pyhd8ed1ab_0 + - dagster-postgres=0.23.15=pyhd8ed1ab_0 + - dagster-webserver=1.7.15=pyhd8ed1ab_0 - dask-core=2024.7.1=pyhd8ed1ab_0 - dask-expr=1.1.9=pyhd8ed1ab_0 - dataclasses=0.8=pyhc8e2a94_3 diff --git a/environments/conda-osx-arm64.lock.yml b/environments/conda-osx-arm64.lock.yml index e8336cee54..1bd40aa3ef 100644 --- a/environments/conda-osx-arm64.lock.yml +++ b/environments/conda-osx-arm64.lock.yml @@ -1,6 +1,6 @@ # Generated by conda-lock. # platform: osx-arm64 -# input_hash: f5486d282d7491605261d9fa8ee30642f2208e7c34a01be35fcea81fc65c3a99 +# input_hash: effba85c5b26f2821212c86be51fddc01fc2ab83df27e4d133d81de327e4f153 channels: - conda-forge @@ -97,11 +97,11 @@ dependencies: - cryptography=42.0.8=py312had01cb0_0 - curl=8.9.0=hbf5303f_0 - cycler=0.12.1=pyhd8ed1ab_0 - - dagster=1.7.12=pyhd8ed1ab_12 - - dagster-graphql=1.7.12=pyhd8ed1ab_0 - - dagster-pipes=1.7.12=pyhd8ed1ab_0 - - dagster-postgres=0.23.12=pyhd8ed1ab_0 - - dagster-webserver=1.7.12=pyhd8ed1ab_0 + - dagster=1.7.15=pyhd8ed1ab_12 + - dagster-graphql=1.7.15=pyhd8ed1ab_0 + - dagster-pipes=1.7.15=pyhd8ed1ab_0 + - dagster-postgres=0.23.15=pyhd8ed1ab_0 + - dagster-webserver=1.7.15=pyhd8ed1ab_0 - dask-core=2024.7.1=pyhd8ed1ab_0 - dask-expr=1.1.9=pyhd8ed1ab_0 - dataclasses=0.8=pyhc8e2a94_3 From 66620783177f31db74d6d3df8a6891b9a32df21a Mon Sep 17 00:00:00 2001 From: Zane Selvans Date: Sun, 28 Jul 2024 14:47:20 -0600 Subject: [PATCH 08/13] Add table comments in SQL schemas. --- src/pudl/metadata/classes.py | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/src/pudl/metadata/classes.py b/src/pudl/metadata/classes.py index c7c0572948..75fca525db 100644 --- a/src/pudl/metadata/classes.py +++ b/src/pudl/metadata/classes.py @@ -1508,7 +1508,9 @@ def to_sql( if check_foreign_keys: for key in self.schema.foreign_keys: constraints.append(key.to_sql()) - return sa.Table(self.name, metadata, *columns, *constraints) + return sa.Table( + self.name, metadata, *columns, *constraints, comment=self.description + ) def to_pyarrow(self) -> pa.Schema: """Construct a PyArrow schema for the resource.""" From 7aa56d71f49a9ff798cb150dbc636e1138a21864 Mon Sep 17 00:00:00 2001 From: Zane Selvans Date: Sun, 28 Jul 2024 16:56:53 -0600 Subject: [PATCH 09/13] Include table and column comments in DuckDB schema --- src/pudl/convert/parquet_to_duckdb.py | 39 ++++++++++++++------------- 1 file changed, 20 insertions(+), 19 deletions(-) diff --git a/src/pudl/convert/parquet_to_duckdb.py b/src/pudl/convert/parquet_to_duckdb.py index 673dde963c..2c189cd479 100755 --- a/src/pudl/convert/parquet_to_duckdb.py +++ b/src/pudl/convert/parquet_to_duckdb.py @@ -72,28 +72,29 @@ def parquet_to_duckdb( engine = sa.create_engine(f"duckdb:///{duckdb_path}") metadata.create_all(engine) - if not no_load: - # Connect to DuckDB database - duckdb_conn = duckdb.connect(database=str(duckdb_path)) + with duckdb.connect(database=str(duckdb_path)) as duckdb_conn: duckdb_cursor = duckdb_conn.cursor() - # Iterate through the tables in order of foreign key dependency + # Explicitly add comments to all tables and columns, since this is not done + # automatically by create_all(): for table in metadata.sorted_tables: - parquet_file_path = parquet_dir / f"{table.name}.parquet" - if parquet_file_path.exists(): - logger.info( - f"Loading parquet file: {parquet_file_path} into {duckdb_path}" - ) - sql_command = f""" - COPY {table.name} FROM '{parquet_file_path}' (FORMAT PARQUET); - """ - duckdb_cursor.execute(sql_command) - else: - raise FileNotFoundError("Parquet file not found for: ", table.name) - - # Commit and close connections - duckdb_conn.commit() - duckdb_conn.close() + duckdb_cursor.execute(str(sa.schema.SetTableComment(table))) + for column in table.columns: + duckdb_cursor.execute(str(sa.schema.SetColumnComment(column))) + + # Load data into the DuckDB database from parquet files, if requested: + if not no_load: + parquet_file_path = parquet_dir / f"{table.name}.parquet" + if parquet_file_path.exists(): + logger.info( + f"Loading parquet file: {parquet_file_path} into {duckdb_path}" + ) + sql_command = f""" + COPY {table.name} FROM '{parquet_file_path}' (FORMAT PARQUET); + """ + duckdb_cursor.execute(sql_command) + else: + raise FileNotFoundError("Parquet file not found for: ", table.name) if __name__ == "__main__": From 9fbf4b275f2c501992d63f5aedc72ca4dea1fd5a Mon Sep 17 00:00:00 2001 From: Zane Selvans Date: Sun, 28 Jul 2024 22:45:53 -0600 Subject: [PATCH 10/13] Lol jk it was putting comments in there all along. --- src/pudl/convert/parquet_to_duckdb.py | 14 ++++---------- 1 file changed, 4 insertions(+), 10 deletions(-) diff --git a/src/pudl/convert/parquet_to_duckdb.py b/src/pudl/convert/parquet_to_duckdb.py index 2c189cd479..ac0b5c0d49 100755 --- a/src/pudl/convert/parquet_to_duckdb.py +++ b/src/pudl/convert/parquet_to_duckdb.py @@ -74,16 +74,10 @@ def parquet_to_duckdb( with duckdb.connect(database=str(duckdb_path)) as duckdb_conn: duckdb_cursor = duckdb_conn.cursor() - # Iterate through the tables in order of foreign key dependency - # Explicitly add comments to all tables and columns, since this is not done - # automatically by create_all(): - for table in metadata.sorted_tables: - duckdb_cursor.execute(str(sa.schema.SetTableComment(table))) - for column in table.columns: - duckdb_cursor.execute(str(sa.schema.SetColumnComment(column))) - - # Load data into the DuckDB database from parquet files, if requested: - if not no_load: + # Load data into the DuckDB database from parquet files, if requested: + if not no_load: + # Iterate through the tables in order of foreign key dependency + for table in metadata.sorted_tables: parquet_file_path = parquet_dir / f"{table.name}.parquet" if parquet_file_path.exists(): logger.info( From 98a137b8a1d8540b845e688da2ea76647cfc95dc Mon Sep 17 00:00:00 2001 From: Zane Selvans Date: Mon, 29 Jul 2024 10:12:23 -0600 Subject: [PATCH 11/13] Swap conditional and context manager order for parquet loading --- src/pudl/convert/parquet_to_duckdb.py | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/src/pudl/convert/parquet_to_duckdb.py b/src/pudl/convert/parquet_to_duckdb.py index ac0b5c0d49..a11e575d65 100755 --- a/src/pudl/convert/parquet_to_duckdb.py +++ b/src/pudl/convert/parquet_to_duckdb.py @@ -72,10 +72,10 @@ def parquet_to_duckdb( engine = sa.create_engine(f"duckdb:///{duckdb_path}") metadata.create_all(engine) - with duckdb.connect(database=str(duckdb_path)) as duckdb_conn: - duckdb_cursor = duckdb_conn.cursor() - # Load data into the DuckDB database from parquet files, if requested: - if not no_load: + if not no_load: + with duckdb.connect(database=str(duckdb_path)) as duckdb_conn: + duckdb_cursor = duckdb_conn.cursor() + # Load data into the DuckDB database from parquet files, if requested: # Iterate through the tables in order of foreign key dependency for table in metadata.sorted_tables: parquet_file_path = parquet_dir / f"{table.name}.parquet" From f0b61f6a7366d1c8958b895464992058c3cb8f77 Mon Sep 17 00:00:00 2001 From: Zane Selvans Date: Mon, 29 Jul 2024 20:22:42 -0600 Subject: [PATCH 12/13] Merge main and update dependencies b/c both branches had changes. --- environments/conda-linux-64.lock.yml | 16 +- environments/conda-lock.yml | 212 +++++++++++++------------- environments/conda-osx-64.lock.yml | 18 +-- environments/conda-osx-arm64.lock.yml | 18 +-- 4 files changed, 132 insertions(+), 132 deletions(-) diff --git a/environments/conda-linux-64.lock.yml b/environments/conda-linux-64.lock.yml index b46a348030..c3aac244ab 100644 --- a/environments/conda-linux-64.lock.yml +++ b/environments/conda-linux-64.lock.yml @@ -19,7 +19,7 @@ dependencies: - anyascii=0.3.2=pyhd8ed1ab_0 - anyio=4.4.0=pyhd8ed1ab_0 - appdirs=1.4.4=pyh9f0ad1d_0 - - arelle-release=2.30.14=pyhd8ed1ab_0 + - arelle-release=2.30.15=pyhd8ed1ab_0 - argon2-cffi=23.1.0=pyhd8ed1ab_0 - argon2-cffi-bindings=21.2.0=py312h98912ed_4 - arrow=1.3.0=pyhd8ed1ab_0 @@ -49,7 +49,7 @@ dependencies: - azure-storage-common-cpp=12.7.0=h10ac4d7_1 - babel=2.14.0=pyhd8ed1ab_0 - backoff=2.2.1=pyhd8ed1ab_0 - - backports=1.0=pyhd8ed1ab_3 + - backports=1.0=pyhd8ed1ab_4 - backports.tarfile=1.0.0=pyhd8ed1ab_1 - backports.zoneinfo=0.2.1=py312h7900ff3_8 - bcrypt=4.2.0=py312hf008fa9_0 @@ -199,7 +199,7 @@ dependencies: - humanize=4.10.0=pyhd8ed1ab_0 - hupper=1.12.1=pyhd8ed1ab_0 - hyperframe=6.0.1=pyhd8ed1ab_0 - - hypothesis=6.108.4=pyha770c72_0 + - hypothesis=6.108.5=pyha770c72_0 - icu=73.2=h59595ed_0 - identify=2.6.0=pyhd8ed1ab_0 - idna=3.7=pyhd8ed1ab_0 @@ -392,7 +392,7 @@ dependencies: - packaging=24.1=pyhd8ed1ab_0 - pandas=2.2.2=py312h1d6d2e6_1 - pandera-core=0.20.0=pyhd8ed1ab_0 - - pandoc=3.2.1=ha770c72_0 + - pandoc=3.3=ha770c72_0 - pandocfilters=1.5.0=pyhd8ed1ab_0 - pango=1.54.0=h4c5309f_1 - paramiko=3.4.0=pyhd8ed1ab_0 @@ -522,12 +522,12 @@ dependencies: - sphinx-basic-ng=1.0.0b2=pyhd8ed1ab_1 - sphinx-issues=1.2.0=py_0 - sphinx-reredirects=0.1.5=pyhd8ed1ab_0 - - sphinxcontrib-applehelp=1.0.8=pyhd8ed1ab_0 + - sphinxcontrib-applehelp=2.0.0=pyhd8ed1ab_0 - sphinxcontrib-bibtex=2.6.2=pyhd8ed1ab_0 - - sphinxcontrib-devhelp=1.0.6=pyhd8ed1ab_0 - - sphinxcontrib-htmlhelp=2.0.6=pyhd8ed1ab_0 + - sphinxcontrib-devhelp=2.0.0=pyhd8ed1ab_0 + - sphinxcontrib-htmlhelp=2.1.0=pyhd8ed1ab_0 - sphinxcontrib-jsmath=1.0.1=pyhd8ed1ab_0 - - sphinxcontrib-qthelp=1.0.8=pyhd8ed1ab_0 + - sphinxcontrib-qthelp=2.0.0=pyhd8ed1ab_0 - sphinxcontrib-serializinghtml=1.1.10=pyhd8ed1ab_0 - splink=3.9.15=pyhd8ed1ab_0 - sqlalchemy=2.0.31=py312h9a8786e_0 diff --git a/environments/conda-lock.yml b/environments/conda-lock.yml index cddb774ba8..a34f90ee29 100644 --- a/environments/conda-lock.yml +++ b/environments/conda-lock.yml @@ -591,7 +591,7 @@ package: category: main optional: false - name: arelle-release - version: 2.30.14 + version: 2.30.15 manager: conda platform: linux-64 dependencies: @@ -605,14 +605,14 @@ package: python: ">=3.8" python-dateutil: 2.* regex: "" - url: https://conda.anaconda.org/conda-forge/noarch/arelle-release-2.30.14-pyhd8ed1ab_0.conda + url: https://conda.anaconda.org/conda-forge/noarch/arelle-release-2.30.15-pyhd8ed1ab_0.conda hash: - md5: 62634472e44f62714ba9298322655eca - sha256: 89d3e2edc5e300116887f560451b4be3dac447ad47b178406c9176440fca4c60 + md5: b512b64f40a41a7368f0f8dcf9f848ac + sha256: 23f0605d9f7d1802512b2c3b65df62f72e650737d250c53bc22b53b8956a37bd category: main optional: false - name: arelle-release - version: 2.30.14 + version: 2.30.15 manager: conda platform: osx-64 dependencies: @@ -626,14 +626,14 @@ package: openpyxl: 3.* pyparsing: 3.* lxml: ">=4,<6" - url: https://conda.anaconda.org/conda-forge/noarch/arelle-release-2.30.14-pyhd8ed1ab_0.conda + url: https://conda.anaconda.org/conda-forge/noarch/arelle-release-2.30.15-pyhd8ed1ab_0.conda hash: - md5: 62634472e44f62714ba9298322655eca - sha256: 89d3e2edc5e300116887f560451b4be3dac447ad47b178406c9176440fca4c60 + md5: b512b64f40a41a7368f0f8dcf9f848ac + sha256: 23f0605d9f7d1802512b2c3b65df62f72e650737d250c53bc22b53b8956a37bd category: main optional: false - name: arelle-release - version: 2.30.14 + version: 2.30.15 manager: conda platform: osx-arm64 dependencies: @@ -647,10 +647,10 @@ package: openpyxl: 3.* pyparsing: 3.* lxml: ">=4,<6" - url: https://conda.anaconda.org/conda-forge/noarch/arelle-release-2.30.14-pyhd8ed1ab_0.conda + url: https://conda.anaconda.org/conda-forge/noarch/arelle-release-2.30.15-pyhd8ed1ab_0.conda hash: - md5: 62634472e44f62714ba9298322655eca - sha256: 89d3e2edc5e300116887f560451b4be3dac447ad47b178406c9176440fca4c60 + md5: b512b64f40a41a7368f0f8dcf9f848ac + sha256: 23f0605d9f7d1802512b2c3b65df62f72e650737d250c53bc22b53b8956a37bd category: main optional: false - name: argon2-cffi @@ -1948,11 +1948,11 @@ package: manager: conda platform: linux-64 dependencies: - python: ">=2.7" - url: https://conda.anaconda.org/conda-forge/noarch/backports-1.0-pyhd8ed1ab_3.conda + python: ">=3" + url: https://conda.anaconda.org/conda-forge/noarch/backports-1.0-pyhd8ed1ab_4.conda hash: - md5: 54ca2e08b3220c148a1d8329c2678e02 - sha256: 711602276ae39276cb0faaca6fd0ac851fff0ca17151917569174841ef830bbd + md5: 67bdebbc334513034826e9b63f769d4c + sha256: 31b51537ce7d2ba8b5b3d0095f1813711884304ac1701bc55938ca75f6c82e19 category: main optional: false - name: backports @@ -1960,11 +1960,11 @@ package: manager: conda platform: osx-64 dependencies: - python: ">=2.7" - url: https://conda.anaconda.org/conda-forge/noarch/backports-1.0-pyhd8ed1ab_3.conda + python: ">=3" + url: https://conda.anaconda.org/conda-forge/noarch/backports-1.0-pyhd8ed1ab_4.conda hash: - md5: 54ca2e08b3220c148a1d8329c2678e02 - sha256: 711602276ae39276cb0faaca6fd0ac851fff0ca17151917569174841ef830bbd + md5: 67bdebbc334513034826e9b63f769d4c + sha256: 31b51537ce7d2ba8b5b3d0095f1813711884304ac1701bc55938ca75f6c82e19 category: main optional: false - name: backports @@ -1972,11 +1972,11 @@ package: manager: conda platform: osx-arm64 dependencies: - python: ">=2.7" - url: https://conda.anaconda.org/conda-forge/noarch/backports-1.0-pyhd8ed1ab_3.conda + python: ">=3" + url: https://conda.anaconda.org/conda-forge/noarch/backports-1.0-pyhd8ed1ab_4.conda hash: - md5: 54ca2e08b3220c148a1d8329c2678e02 - sha256: 711602276ae39276cb0faaca6fd0ac851fff0ca17151917569174841ef830bbd + md5: 67bdebbc334513034826e9b63f769d4c + sha256: 31b51537ce7d2ba8b5b3d0095f1813711884304ac1701bc55938ca75f6c82e19 category: main optional: false - name: backports.tarfile @@ -4111,8 +4111,8 @@ package: setuptools: "" jinja2: "" pytz: "" - rich: "" tabulate: "" + rich: "" filelock: "" python-dotenv: "" pywin32-on-windows: "" @@ -4154,8 +4154,8 @@ package: setuptools: "" jinja2: "" pytz: "" - rich: "" tabulate: "" + rich: "" filelock: "" python-dotenv: "" pywin32-on-windows: "" @@ -8600,7 +8600,7 @@ package: category: main optional: false - name: hypothesis - version: 6.108.4 + version: 6.108.5 manager: conda platform: linux-64 dependencies: @@ -8611,14 +8611,14 @@ package: python: ">=3.8" setuptools: "" sortedcontainers: ">=2.1.0,<3.0.0" - 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name: sphinxcontrib-qthelp - version: 1.0.8 + version: 2.0.0 manager: conda platform: osx-arm64 dependencies: python: ">=3.9" sphinx: ">=5" - url: https://conda.anaconda.org/conda-forge/noarch/sphinxcontrib-qthelp-1.0.8-pyhd8ed1ab_0.conda + url: https://conda.anaconda.org/conda-forge/noarch/sphinxcontrib-qthelp-2.0.0-pyhd8ed1ab_0.conda hash: - md5: 179912c661d6aa9fe794e81c854f8d9f - sha256: d644031a17b970c89b11ebd6ff56e7dafc71d9096754840e7742e6597238527f + md5: d6e5ea5fe00164ac6c2dcc5d76a42192 + sha256: 7ae639b729844de2ec74dbaf1acccc14843868a82fa46cd2ceb735bc8266af5b category: main optional: false - name: sphinxcontrib-serializinghtml diff --git a/environments/conda-osx-64.lock.yml b/environments/conda-osx-64.lock.yml index 7dbd68fb23..24c5329322 100644 --- a/environments/conda-osx-64.lock.yml +++ b/environments/conda-osx-64.lock.yml @@ -18,7 +18,7 @@ dependencies: - anyio=4.4.0=pyhd8ed1ab_0 - appdirs=1.4.4=pyh9f0ad1d_0 - appnope=0.1.4=pyhd8ed1ab_0 - - arelle-release=2.30.14=pyhd8ed1ab_0 + - arelle-release=2.30.15=pyhd8ed1ab_0 - argon2-cffi=23.1.0=pyhd8ed1ab_0 - argon2-cffi-bindings=21.2.0=py312h104f124_4 - arrow=1.3.0=pyhd8ed1ab_0 @@ -48,7 +48,7 @@ dependencies: - azure-storage-common-cpp=12.7.0=hf91904f_1 - babel=2.14.0=pyhd8ed1ab_0 - backoff=2.2.1=pyhd8ed1ab_0 - - backports=1.0=pyhd8ed1ab_3 + - backports=1.0=pyhd8ed1ab_4 - backports.tarfile=1.0.0=pyhd8ed1ab_1 - backports.zoneinfo=0.2.1=py312hb401068_8 - bcrypt=4.2.0=py312ha47ea1c_0 @@ -197,7 +197,7 @@ dependencies: - humanize=4.10.0=pyhd8ed1ab_0 - hupper=1.12.1=pyhd8ed1ab_0 - hyperframe=6.0.1=pyhd8ed1ab_0 - - hypothesis=6.108.4=pyha770c72_0 + - hypothesis=6.108.5=pyha770c72_0 - icu=73.2=hf5e326d_0 - identify=2.6.0=pyhd8ed1ab_0 - idna=3.7=pyhd8ed1ab_0 @@ -265,7 +265,7 @@ dependencies: - libcblas=3.9.0=22_osx64_openblas - libcrc32c=1.1.2=he49afe7_0 - libcurl=8.9.0=hfcf2730_0 - - libcxx=18.1.8=hef8daea_0 + - libcxx=18.1.8=hef8daea_1 - libdeflate=1.20=h49d49c5_0 - libedit=3.1.20191231=h0678c8f_2 - libev=4.33=h10d778d_2 @@ -382,7 +382,7 @@ dependencies: - packaging=24.1=pyhd8ed1ab_0 - pandas=2.2.2=py312h1171441_1 - pandera-core=0.20.0=pyhd8ed1ab_0 - - pandoc=3.2.1=h694c41f_0 + - pandoc=3.3=h694c41f_0 - pandocfilters=1.5.0=pyhd8ed1ab_0 - pango=1.54.0=h115fe74_1 - paramiko=3.4.0=pyhd8ed1ab_0 @@ -511,12 +511,12 @@ dependencies: - sphinx-basic-ng=1.0.0b2=pyhd8ed1ab_1 - sphinx-issues=1.2.0=py_0 - sphinx-reredirects=0.1.5=pyhd8ed1ab_0 - - sphinxcontrib-applehelp=1.0.8=pyhd8ed1ab_0 + - sphinxcontrib-applehelp=2.0.0=pyhd8ed1ab_0 - sphinxcontrib-bibtex=2.6.2=pyhd8ed1ab_0 - - sphinxcontrib-devhelp=1.0.6=pyhd8ed1ab_0 - - sphinxcontrib-htmlhelp=2.0.6=pyhd8ed1ab_0 + - sphinxcontrib-devhelp=2.0.0=pyhd8ed1ab_0 + - sphinxcontrib-htmlhelp=2.1.0=pyhd8ed1ab_0 - sphinxcontrib-jsmath=1.0.1=pyhd8ed1ab_0 - - sphinxcontrib-qthelp=1.0.8=pyhd8ed1ab_0 + - sphinxcontrib-qthelp=2.0.0=pyhd8ed1ab_0 - sphinxcontrib-serializinghtml=1.1.10=pyhd8ed1ab_0 - splink=3.9.15=pyhd8ed1ab_0 - sqlalchemy=2.0.31=py312hbd25219_0 diff --git a/environments/conda-osx-arm64.lock.yml b/environments/conda-osx-arm64.lock.yml index 1bd40aa3ef..1f4a34eccf 100644 --- a/environments/conda-osx-arm64.lock.yml +++ b/environments/conda-osx-arm64.lock.yml @@ -18,7 +18,7 @@ dependencies: - anyio=4.4.0=pyhd8ed1ab_0 - appdirs=1.4.4=pyh9f0ad1d_0 - appnope=0.1.4=pyhd8ed1ab_0 - - arelle-release=2.30.14=pyhd8ed1ab_0 + - arelle-release=2.30.15=pyhd8ed1ab_0 - argon2-cffi=23.1.0=pyhd8ed1ab_0 - argon2-cffi-bindings=21.2.0=py312h02f2b3b_4 - arrow=1.3.0=pyhd8ed1ab_0 @@ -48,7 +48,7 @@ dependencies: - azure-storage-common-cpp=12.7.0=hcf3b6fd_1 - babel=2.14.0=pyhd8ed1ab_0 - backoff=2.2.1=pyhd8ed1ab_0 - - backports=1.0=pyhd8ed1ab_3 + - backports=1.0=pyhd8ed1ab_4 - backports.tarfile=1.0.0=pyhd8ed1ab_1 - backports.zoneinfo=0.2.1=py312h81bd7bf_8 - bcrypt=4.2.0=py312h552d48e_0 @@ -197,7 +197,7 @@ dependencies: - humanize=4.10.0=pyhd8ed1ab_0 - hupper=1.12.1=pyhd8ed1ab_0 - hyperframe=6.0.1=pyhd8ed1ab_0 - - hypothesis=6.108.4=pyha770c72_0 + - hypothesis=6.108.5=pyha770c72_0 - icu=73.2=hc8870d7_0 - identify=2.6.0=pyhd8ed1ab_0 - idna=3.7=pyhd8ed1ab_0 @@ -265,7 +265,7 @@ dependencies: - libcblas=3.9.0=23_osxarm64_openblas - libcrc32c=1.1.2=hbdafb3b_0 - libcurl=8.9.0=hfd8ffcc_0 - - libcxx=18.1.8=h167917d_0 + - libcxx=18.1.8=h167917d_1 - libdeflate=1.20=h93a5062_0 - libedit=3.1.20191231=hc8eb9b7_2 - libev=4.33=h93a5062_2 @@ -382,7 +382,7 @@ dependencies: - packaging=24.1=pyhd8ed1ab_0 - pandas=2.2.2=py312h8ae5369_1 - pandera-core=0.20.0=pyhd8ed1ab_0 - - pandoc=3.2.1=hce30654_0 + - pandoc=3.3=hce30654_0 - pandocfilters=1.5.0=pyhd8ed1ab_0 - pango=1.54.0=h9ee27a3_1 - paramiko=3.4.0=pyhd8ed1ab_0 @@ -511,12 +511,12 @@ dependencies: - sphinx-basic-ng=1.0.0b2=pyhd8ed1ab_1 - sphinx-issues=1.2.0=py_0 - sphinx-reredirects=0.1.5=pyhd8ed1ab_0 - - sphinxcontrib-applehelp=1.0.8=pyhd8ed1ab_0 + - sphinxcontrib-applehelp=2.0.0=pyhd8ed1ab_0 - sphinxcontrib-bibtex=2.6.2=pyhd8ed1ab_0 - - sphinxcontrib-devhelp=1.0.6=pyhd8ed1ab_0 - - sphinxcontrib-htmlhelp=2.0.6=pyhd8ed1ab_0 + - sphinxcontrib-devhelp=2.0.0=pyhd8ed1ab_0 + - sphinxcontrib-htmlhelp=2.1.0=pyhd8ed1ab_0 - sphinxcontrib-jsmath=1.0.1=pyhd8ed1ab_0 - - sphinxcontrib-qthelp=1.0.8=pyhd8ed1ab_0 + - sphinxcontrib-qthelp=2.0.0=pyhd8ed1ab_0 - sphinxcontrib-serializinghtml=1.1.10=pyhd8ed1ab_0 - splink=3.9.15=pyhd8ed1ab_0 - sqlalchemy=2.0.31=py312h7e5086c_0 From 221ce77c25f72489ab75ca7d7b8b761fa8bca8ed Mon Sep 17 00:00:00 2001 From: Zane Selvans Date: Mon, 29 Jul 2024 21:59:59 -0600 Subject: [PATCH 13/13] Merge alembic migrations from this branch and main --- migrations/versions/33d66c56823a_.py | 24 ++++++++++++++++++++++++ 1 file changed, 24 insertions(+) create mode 100644 migrations/versions/33d66c56823a_.py diff --git a/migrations/versions/33d66c56823a_.py b/migrations/versions/33d66c56823a_.py new file mode 100644 index 0000000000..21ab1e5ffc --- /dev/null +++ b/migrations/versions/33d66c56823a_.py @@ -0,0 +1,24 @@ +"""empty message + +Revision ID: 33d66c56823a +Revises: 52aa9f44b6a7, 7a16ce1fe774 +Create Date: 2024-07-29 20:33:23.329220 + +""" +from alembic import op +import sqlalchemy as sa + + +# revision identifiers, used by Alembic. +revision = '33d66c56823a' +down_revision = ('52aa9f44b6a7', '7a16ce1fe774') +branch_labels = None +depends_on = None + + +def upgrade() -> None: + pass + + +def downgrade() -> None: + pass