Update PUDL to pandas 2.0 #8720
Workflow file for this run
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| --- | |
| name: tox-pytest | |
| on: [pull_request] | |
| env: | |
| PUDL_OUTPUT: /home/runner/pudl-work/output | |
| PUDL_INPUT: /home/runner/pudl-work/data/ | |
| DAGSTER_HOME: /home/runner/pudl-work/dagster_home/ | |
| jobs: | |
| ci-static: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| tox-env: | |
| - linters | |
| - docs | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 2 | |
| - name: Install Conda environment using mamba | |
| uses: mamba-org/provision-with-micromamba@v16 | |
| with: | |
| environment-file: test/test-environment.yml | |
| cache-env: true | |
| channels: conda-forge,defaults | |
| channel-priority: strict | |
| - name: Log environment details | |
| run: | | |
| conda info | |
| conda list | |
| conda config --show-sources | |
| conda config --show | |
| printenv | sort | |
| - name: Build ${{ matrix.tox-env}} with Tox | |
| run: | | |
| tox -e ${{ matrix.tox-env }} | |
| - name: Upload coverage | |
| uses: actions/upload-artifact@v3 | |
| if: ${{ matrix.tox-env == 'docs' }} | |
| with: | |
| name: coverage-docs | |
| path: coverage.xml | |
| ci-unit: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 2 | |
| - name: Install Conda environment using mamba | |
| uses: mamba-org/provision-with-micromamba@v16 | |
| with: | |
| environment-file: test/test-environment.yml | |
| cache-env: true | |
| channels: conda-forge,defaults | |
| channel-priority: strict | |
| - name: Log environment details | |
| run: | | |
| conda info | |
| conda list | |
| conda config --show-sources | |
| conda config --show | |
| printenv | sort | |
| - name: Log SQLite3 version | |
| run: | | |
| which sqlite3 | |
| sqlite3 --version | |
| - name: Run unit tests with Tox | |
| run: | | |
| tox -e unit -- --durations 0 | |
| - name: Upload coverage | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: coverage-unit | |
| path: coverage.xml | |
| ci-integration: | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: read | |
| id-token: write | |
| strategy: | |
| fail-fast: false | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 2 | |
| - name: Install Conda environment using mamba | |
| uses: mamba-org/provision-with-micromamba@v16 | |
| with: | |
| environment-file: test/test-environment.yml | |
| cache-env: true | |
| channels: conda-forge,defaults | |
| channel-priority: strict | |
| - name: Log environment details | |
| run: | | |
| conda info | |
| conda list | |
| conda config --show-sources | |
| conda config --show | |
| printenv | sort | |
| - name: Log SQLite3 version | |
| run: | | |
| which sqlite3 | |
| sqlite3 --version | |
| - name: Compile Zenodo datastore DOIs for cache invalidation | |
| run: | |
| grep -e '.*10\.\(5281\|5072\)/zenodo\..*' src/pudl/workspace/datastore.py | |
| | sed -e 's/",*$//g' | sed -e 's/^.*"//g' | sort > datastore-dois.txt | |
| - name: Restore Zenodo datastore from cache if possible | |
| uses: actions/cache@v3 | |
| id: cache-zenodo-datastore | |
| with: | |
| path: ${{ env.PUDL_INPUT }} | |
| key: zenodo-datastore-${{ hashFiles('datastore-dois.txt') }} | |
| - name: Make input, output and dagster dirs | |
| run: mkdir -p ${{ env.PUDL_OUTPUT }} ${{ env.PUDL_INPUT}} ${{ env.DAGSTER_HOME }} | |
| - name: List workspace contents | |
| run: find /home/runner/pudl-work | |
| - name: Set default GCP credentials | |
| id: gcloud-auth | |
| continue-on-error: true | |
| uses: "google-github-actions/auth@v1" | |
| with: | |
| workload_identity_provider: "projects/345950277072/locations/global/workloadIdentityPools/gh-actions-pool/providers/gh-actions-provider" | |
| service_account: "tox-pytest-github-action@catalyst-cooperative-pudl.iam.gserviceaccount.com" | |
| - name: Run integration tests, trying to use GCS cache if possible | |
| run: | | |
| tox -e integration -- --gcs-cache-path=gs://zenodo-cache.catalyst.coop --durations 0 | |
| - name: Upload coverage | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: coverage-integration | |
| path: coverage.xml | |
| - name: Log post-test Zenodo datastore contents | |
| run: find ${{ env.PUDL_INPUT }} | |
| ci-coverage: | |
| runs-on: ubuntu-latest | |
| needs: | |
| - ci-unit | |
| - ci-integration | |
| - ci-static | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Download coverage | |
| id: download-unit | |
| uses: actions/download-artifact@v3 | |
| with: | |
| path: coverage | |
| - name: List downloaded files | |
| run: | | |
| ls -R | |
| - name: Upload test coverage report to CodeCov | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| directory: coverage | |
| ci-notify: | |
| runs-on: ubuntu-latest | |
| if: ${{ always() }} | |
| needs: | |
| - ci-unit | |
| - ci-integration | |
| steps: | |
| - name: Inform the Codemonkeys | |
| uses: 8398a7/action-slack@v3 | |
| continue-on-error: true | |
| with: | |
| status: custom | |
| fields: workflow,job,commit,repo,ref,author,took | |
| custom_payload: | | |
| { | |
| username: 'action-slack', | |
| icon_emoji: ':octocat:', | |
| attachments: [{ | |
| color: '${{ needs.ci-test.result }}' === 'success' ? 'good' : '${{ needs.ci-test.result }}' === 'failure' ? 'danger' : 'warning', | |
| text: `${process.env.AS_REPO}@${process.env.AS_REF}\n ${process.env.AS_WORKFLOW} (${process.env.AS_COMMIT})\n by ${process.env.AS_AUTHOR}\n Status: ${{ needs.ci-test.result }}`, | |
| }] | |
| } | |
| env: | |
| GITHUB_TOKEN: ${{ github.token }} # required | |
| SLACK_WEBHOOK_URL: ${{ secrets.SLACK_WEBHOOK_URL }} # required | |
| MATRIX_CONTEXT: ${{ toJson(matrix) }} # required |