diff --git a/.envrc b/.envrc index 3550a30f..9ad670eb 100644 --- a/.envrc +++ b/.envrc @@ -1 +1,4 @@ -use flake +PATH=~/.pixi/bin:$PATH + +watch_file pixi.lock +eval "$(pixi shell-hook)" diff --git a/.github/workflows/build_nix.yml b/.github/workflows/build_nix.yml deleted file mode 100644 index e9b3765a..00000000 --- a/.github/workflows/build_nix.yml +++ /dev/null @@ -1,27 +0,0 @@ -name: "Build legacy Nix package on Ubuntu" - -on: - push: - -jobs: - build: - runs-on: ubuntu-latest - steps: - - uses: actions/checkout@v2 - - - name: Cache nix store - id: cache-nix - uses: actions/cache@v2 - with: - path: | - ~/.nix-portable/store - ~/bin/nix-portable - key: nix-${{ hashFiles('shell.nix') }}-${{ hashFiles('nix/**') }}-v010 - - - name: Install nix-portable - if: steps.cache-nix.outputs.cache-hit != 'true' - run: | - mkdir ~/bin - wget -qO ~/bin/nix-portable https://github.com/DavHau/nix-portable/releases/download/v010/nix-portable - chmod +x ~/bin/nix-portable - - run: ~/bin/nix-portable nix-build . -A defaultPackage.x86_64-linux diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index f6ae00ac..6a8b38f1 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -13,7 +13,7 @@ jobs: runs-on: ubuntu-latest steps: - name: Checkout sources - uses: actions/checkout@v2 + uses: actions/checkout@v4 - name: Install stable toolchain uses: actions-rs/toolchain@v1 @@ -47,7 +47,7 @@ jobs: os: ubuntu-latest rust: stable steps: - - uses: actions/checkout@v2 + - uses: actions/checkout@v4 - uses: actions-rs/toolchain@v1 with: @@ -65,65 +65,30 @@ jobs: strategy: fail-fast: false matrix: - os: [macos-latest, windows-latest, ubuntu-latest] + os: [macos-latest, ubuntu-latest] steps: - - uses: actions/checkout@v2 - - - uses: actions-rs/toolchain@v1 + - uses: actions/checkout@v4 with: - toolchain: stable - override: true - - - name: Get Rust Version - id: rust-version - run: echo "::set-output name=version::$(cargo -V | head -n1 | awk '{print $2}')" + fetch-depth: 0 - - uses: actions/cache@v2 + - uses: prefix-dev/setup-pixi@v0.8.1 with: - path: | - ~/.cargo/git - ~/.cargo/registry - target - key: ${{ runner.os }}-cargo-${{ steps.rust-version.outputs.version }} - - - name: Install cargo-c (linux) - if: startsWith(matrix.os, 'ubuntu') - env: - LINK: https://github.com/lu-zero/cargo-c/releases/download - CARGO_C_VERSION: 0.8.0 - run: | - curl -L "$LINK/v$CARGO_C_VERSION/cargo-c-linux.tar.gz" | - tar xz -C $HOME/.cargo/bin - - - name: Install cargo-c (macos) - if: startsWith(matrix.os, 'macos') - env: - LINK: https://github.com/lu-zero/cargo-c/releases/download - CARGO_C_VERSION: 0.8.0 - run: | - curl -LO "$LINK/v$CARGO_C_VERSION/cargo-c-macos.zip" - 7z e -y "cargo-c-macos.zip" -o$HOME/.cargo/bin - - - name: Install cargo-c (win) - if: startsWith(matrix.os, 'windows') - run: | - $LINK = "https://github.com/lu-zero/cargo-c/releases/download/v0.8.0" - $CARGO_C_FILE = "cargo-c-windows-msvc" - curl -LO "$LINK/$CARGO_C_FILE.zip" - 7z e -y "$CARGO_C_FILE.zip" -o"${env:USERPROFILE}\.cargo\bin" + pixi-version: v0.34.0 + cache: true + frozen: true - name: Build C API run: | - cargo cbuild --verbose --release + pixi run cargo cbuild --verbose --release - name: Run C API tests run: | - cargo capi test --verbose --release + pixi run cargo capi test --verbose --release - name: Install into temporary location if: startsWith(matrix.os, 'macos') || startsWith(matrix.os, 'ubuntu') run: | - cargo cinstall --verbose --release --destdir=temp + pixi run cargo cinstall --verbose --release --destdir=temp - name: Copy installed files to /usr/local if: startsWith(matrix.os, 'macos') || startsWith(matrix.os, 'ubuntu') @@ -146,7 +111,7 @@ jobs: if: startsWith(matrix.os, 'macos') || startsWith(matrix.os, 'ubuntu') working-directory: examples/usage-from-c run: | - make + pixi run make cross_testing: runs-on: ubuntu-latest @@ -159,13 +124,12 @@ jobs: s390x-unknown-linux-gnu, ] steps: - - uses: actions/checkout@v2 + - uses: actions/checkout@v4 - - uses: actions-rs/toolchain@v1 + - uses: dtolnay/rust-toolchain@master with: toolchain: stable - target: ${{ matrix.target }} - override: true + targets: ${{ matrix.target }} - name: Run tests uses: actions-rs/cargo@v1 @@ -177,7 +141,7 @@ jobs: coverage: runs-on: ubuntu-latest steps: - - uses: actions/checkout@v2 + - uses: actions/checkout@v4 - uses: actions-rs/toolchain@v1 with: @@ -216,7 +180,7 @@ jobs: runs-on: ubuntu-latest steps: - name: Checkout sources - uses: actions/checkout@v2 + uses: actions/checkout@v4 with: submodules: 'recursive' @@ -244,7 +208,7 @@ jobs: name: "Check if cbindgen runs cleanly for generating the C headers" runs-on: ubuntu-latest steps: - - uses: actions/checkout@v2 + - uses: actions/checkout@v4 - uses: actions-rs/toolchain@v1 with: @@ -262,37 +226,30 @@ jobs: minimum_rust_version: runs-on: ubuntu-latest steps: - - uses: actions/checkout@v2 + - uses: actions/checkout@v4 - name: check if README matches MSRV defined here run: grep '1.68.0' README.md - - uses: actions-rs/toolchain@v1 + - uses: dtolnay/rust-toolchain@master with: toolchain: 1.68.0 - override: true - name: Check if it builds - uses: actions-rs/cargo@v1 - with: - command: build + run: cargo build publish: name: Publish (dry-run) runs-on: ubuntu-latest steps: - name: Checkout sources - uses: actions/checkout@v2 + uses: actions/checkout@v4 - - name: Install stable toolchain - uses: actions-rs/toolchain@v1 + - uses: prefix-dev/setup-pixi@v0.8.1 with: - profile: minimal - toolchain: stable - override: true + pixi-version: v0.34.0 + cache: true + frozen: true - name: Make sure we can publish - uses: actions-rs/cargo@v1 - with: - command: publish - args: --dry-run + run: pixi run cargo publish --dry-run diff --git a/.github/workflows/draft-pdf.yml b/.github/workflows/draft-pdf.yml deleted file mode 100644 index ab920ec4..00000000 --- a/.github/workflows/draft-pdf.yml +++ /dev/null @@ -1,23 +0,0 @@ -on: [push] - -jobs: - paper: - runs-on: ubuntu-latest - name: Paper Draft - steps: - - name: Checkout - uses: actions/checkout@v3 - - name: Build draft PDF - uses: openjournals/openjournals-draft-action@master - with: - journal: joss - # This should be the path to the paper within your repo. - paper-path: joss/paper.md - - name: Upload - uses: actions/upload-artifact@v1 - with: - name: paper - # This is the output path where Pandoc will write the compiled - # PDF. Note, this should be the same directory as the input - # paper.md - path: joss/paper.pdf diff --git a/.github/workflows/gsw-python.yml b/.github/workflows/gsw-python.yml index 656b2ba4..e04a29a0 100644 --- a/.github/workflows/gsw-python.yml +++ b/.github/workflows/gsw-python.yml @@ -11,89 +11,32 @@ jobs: strategy: fail-fast: false matrix: - os: [macos-latest, windows-latest, ubuntu-latest] + os: [macos-latest, ubuntu-latest] steps: - - uses: actions/checkout@v2 + - uses: actions/checkout@v4 with: repository: "TEOS-10/GSW-Python" ref: f9b3f6e4895e9eba37e0bb509291c2046c71c5ee + fetch-depth: 0 - - uses: actions/checkout@v2 + - uses: actions/checkout@v4 with: path: 'src/GSW-rs' + fetch-depth: 0 - - uses: actions-rs/toolchain@v1 + - uses: prefix-dev/setup-pixi@v0.8.1 with: - toolchain: stable - override: true - - - name: Get Rust Version - id: rust-version - run: echo "::set-output name=version::$(cargo -V | head -n1 | awk '{print $2}')" - - - uses: actions/cache@v2 - with: - path: | - ~/.cargo/git - ~/.cargo/registry - target - key: ${{ runner.os }}-cargo-${{ steps.rust-version.outputs.version }} - - - name: Install cargo-c (linux) - if: startsWith(matrix.os, 'ubuntu') - env: - LINK: https://github.com/lu-zero/cargo-c/releases/download - CARGO_C_VERSION: 0.8.0 - run: | - curl -L "$LINK/v$CARGO_C_VERSION/cargo-c-linux.tar.gz" | - tar xz -C $HOME/.cargo/bin - - - name: Install cargo-c (macos) - if: startsWith(matrix.os, 'macos') - env: - LINK: https://github.com/lu-zero/cargo-c/releases/download - CARGO_C_VERSION: 0.8.0 - run: | - curl -LO "$LINK/v$CARGO_C_VERSION/cargo-c-macos.zip" - 7z e -y "cargo-c-macos.zip" -o$HOME/.cargo/bin - - - name: Install cargo-c (win) - if: startsWith(matrix.os, 'windows') - run: | - $LINK = "https://github.com/lu-zero/cargo-c/releases/download/v0.8.0" - $CARGO_C_FILE = "cargo-c-windows-msvc" - curl -LO "$LINK/$CARGO_C_FILE.zip" - 7z e -y "$CARGO_C_FILE.zip" -o"${env:USERPROFILE}\.cargo\bin" - - - name: Set up Python 3.11 - uses: actions/setup-python@v5 - with: - python-version: "3.11" - - - name: Get pip cache dir - id: pip-cache - run: | - echo "::set-output name=dir::$(pip cache dir)" - - - name: pip cache - uses: actions/cache@v2 - with: - path: ${{ steps.pip-cache.outputs.dir }} - key: ${{ runner.os }}-pip-${{ hashFiles('**/setup.py') }} - restore-keys: | - ${{ runner.os }}-pip- - - - name: Install dependencies - run: | - python -m pip install --upgrade pip - pip install pytest xarray dask + pixi-version: v0.34.0 + cache: true + frozen: true + manifest-path: src/GSW-rs/pixi.toml - name: Install patched GSW-Python run: | git apply src/GSW-rs/utils/gsw-py-patch - pip install . + pixi run --manifest-path src/GSW-rs/pixi.toml python -m pip install . - name: Run pytest continue-on-error: true run: | - pytest -s -rxs -v gsw/tests + pixi run --manifest-path src/GSW-rs/pixi.toml pytest -s -rxs -v gsw/tests diff --git a/.gitignore b/.gitignore index fe0fb082..4a4eeec3 100644 --- a/.gitignore +++ b/.gitignore @@ -1,3 +1,4 @@ /target Cargo.lock convert_refdata/data/gsw_*_validation.bin +.pixi/ diff --git a/Cargo.lock b/Cargo.lock index 7466dbfe..dd6df33b 100644 --- a/Cargo.lock +++ b/Cargo.lock @@ -10,85 +10,102 @@ checksum = "aae1277d39aeec15cb388266ecc24b11c80469deae6067e17a1a7aa9e5c1f234" [[package]] name = "aho-corasick" -version = "0.7.20" +version = "1.1.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "cc936419f96fa211c1b9166887b38e5e40b19958e5b895be7c1f93adec7071ac" +checksum = "8e60d3430d3a69478ad0993f19238d2df97c507009a52b3c10addcd7f6bcb916" dependencies = [ "memchr", ] [[package]] -name = "arrayvec" -version = "0.5.2" +name = "anes" +version = "0.1.6" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "23b62fc65de8e4e7f52534fb52b0f3ed04746ae267519eef2a83941e8085068b" +checksum = "4b46cbb362ab8752921c97e041f5e366ee6297bd428a31275b9fcf1e380f7299" [[package]] -name = "assert_cmd" -version = "1.0.8" +name = "anstream" +version = "0.6.17" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c98233c6673d8601ab23e77eb38f999c51100d46c5703b17288c57fddf3a1ffe" +checksum = "23a1e53f0f5d86382dafe1cf314783b2044280f406e7e1506368220ad11b1338" dependencies = [ - "bstr", - "doc-comment", - "predicates", - "predicates-core", - "predicates-tree", - "wait-timeout", + "anstyle", + "anstyle-parse", + "anstyle-query", + "anstyle-wincon", + "colorchoice", + "is_terminal_polyfill", + "utf8parse", ] [[package]] -name = "atomic-polyfill" -version = "0.1.10" +name = "anstyle" +version = "1.0.9" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "9c041a8d9751a520ee19656232a18971f18946a7900f1520ee4400002244dd89" -dependencies = [ - "critical-section", -] +checksum = "8365de52b16c035ff4fcafe0092ba9390540e3e352870ac09933bebcaa2c8c56" [[package]] -name = "atty" -version = "0.2.14" +name = "anstyle-parse" +version = "0.2.6" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "d9b39be18770d11421cdb1b9947a45dd3f37e93092cbf377614828a319d5fee8" +checksum = "3b2d16507662817a6a20a9ea92df6652ee4f94f914589377d69f3b21bc5798a9" dependencies = [ - "hermit-abi", - "libc", - "winapi", + "utf8parse", ] [[package]] -name = "autocfg" -version = "1.1.0" +name = "anstyle-query" +version = "1.1.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "d468802bab17cbc0cc575e9b053f41e72aa36bfa6b7f55e3529ffa43161b97fa" +checksum = "79947af37f4177cfead1110013d678905c37501914fba0efea834c3fe9a8d60c" +dependencies = [ + "windows-sys 0.59.0", +] [[package]] -name = "bare-metal" -version = "0.2.5" +name = "anstyle-wincon" +version = "3.0.6" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5deb64efa5bd81e31fcd1938615a6d98c82eafcbcd787162b6f63b91d6bac5b3" +checksum = "2109dbce0e72be3ec00bed26e6a7479ca384ad226efdd66db8fa2e3a38c83125" dependencies = [ - "rustc_version 0.2.3", + "anstyle", + "windows-sys 0.59.0", ] [[package]] -name = "bare-metal" -version = "1.0.0" +name = "arrayvec" +version = "0.5.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "f8fe8f5a8a398345e52358e18ff07cc17a568fbca5c6f73873d3a62056309603" +checksum = "23b62fc65de8e4e7f52534fb52b0f3ed04746ae267519eef2a83941e8085068b" [[package]] -name = "bit_field" -version = "0.10.1" +name = "assert_cmd" +version = "1.0.8" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "dcb6dd1c2376d2e096796e234a70e17e94cc2d5d54ff8ce42b28cef1d0d359a4" +checksum = "c98233c6673d8601ab23e77eb38f999c51100d46c5703b17288c57fddf3a1ffe" +dependencies = [ + "bstr", + "doc-comment", + "predicates", + "predicates-core", + "predicates-tree", + "wait-timeout", +] + +[[package]] +name = "atomic-polyfill" +version = "1.0.3" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "8cf2bce30dfe09ef0bfaef228b9d414faaf7e563035494d7fe092dba54b300f4" +dependencies = [ + "critical-section", +] [[package]] -name = "bitfield" -version = "0.13.2" +name = "autocfg" +version = "1.4.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "46afbd2983a5d5a7bd740ccb198caf5b82f45c40c09c0eed36052d91cb92e719" +checksum = "ace50bade8e6234aa140d9a2f552bbee1db4d353f69b8217bc503490fc1a9f26" [[package]] name = "bitflags" @@ -96,6 +113,12 @@ version = "1.3.2" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "bef38d45163c2f1dde094a7dfd33ccf595c92905c8f8f4fdc18d06fb1037718a" +[[package]] +name = "bitflags" +version = "2.6.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "b048fb63fd8b5923fc5aa7b340d8e156aec7ec02f0c78fa8a6ddc2613f6f71de" + [[package]] name = "bitvec" version = "0.19.6" @@ -116,21 +139,20 @@ checksum = "ba3569f383e8f1598449f1a423e72e99569137b47740b1da11ef19af3d5c3223" dependencies = [ "lazy_static", "memchr", - "regex-automata", - "serde", + "regex-automata 0.1.10", ] [[package]] name = "bumpalo" -version = "3.13.0" +version = "3.16.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a3e2c3daef883ecc1b5d58c15adae93470a91d425f3532ba1695849656af3fc1" +checksum = "79296716171880943b8470b5f8d03aa55eb2e645a4874bdbb28adb49162e012c" [[package]] name = "byteorder" -version = "1.4.3" +version = "1.5.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "14c189c53d098945499cdfa7ecc63567cf3886b3332b312a5b4585d8d3a6a610" +checksum = "1fd0f2584146f6f2ef48085050886acf353beff7305ebd1ae69500e27c67f64b" [[package]] name = "cast" @@ -140,11 +162,11 @@ checksum = "37b2a672a2cb129a2e41c10b1224bb368f9f37a2b16b612598138befd7b37eb5" [[package]] name = "cbindgen" -version = "0.26.0" +version = "0.27.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "da6bc11b07529f16944307272d5bd9b22530bc7d05751717c9d416586cedab49" +checksum = "3fce8dd7fcfcbf3a0a87d8f515194b49d6135acab73e18bd380d1d93bb1a15eb" dependencies = [ - "clap 3.2.25", + "clap", "heck", "indexmap", "log", @@ -152,16 +174,19 @@ dependencies = [ "quote", "serde", "serde_json", - "syn", + "syn 2.0.85", "tempfile", "toml", ] [[package]] name = "cc" -version = "1.0.73" +version = "1.1.31" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2fff2a6927b3bb87f9595d67196a70493f627687a71d87a0d692242c33f58c11" +checksum = "c2e7962b54006dcfcc61cb72735f4d89bb97061dd6a7ed882ec6b8ee53714c6f" +dependencies = [ + "shlex", +] [[package]] name = "cfg-if" @@ -170,39 +195,58 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "baf1de4339761588bc0619e3cbc0120ee582ebb74b53b4efbf79117bd2da40fd" [[package]] -name = "clap" -version = "2.34.0" +name = "ciborium" +version = "0.2.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "42e69ffd6f0917f5c029256a24d0161db17cea3997d185db0d35926308770f0e" +dependencies = [ + "ciborium-io", + "ciborium-ll", + "serde", +] + +[[package]] +name = "ciborium-io" +version = "0.2.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "05afea1e0a06c9be33d539b876f1ce3692f4afea2cb41f740e7743225ed1c757" + +[[package]] +name = "ciborium-ll" +version = "0.2.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a0610544180c38b88101fecf2dd634b174a62eef6946f84dfc6a7127512b381c" +checksum = "57663b653d948a338bfb3eeba9bb2fd5fcfaecb9e199e87e1eda4d9e8b240fd9" dependencies = [ - "bitflags", - "textwrap 0.11.0", - "unicode-width", + "ciborium-io", + "half", ] [[package]] name = "clap" -version = "3.2.25" +version = "4.5.20" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "b97f376d85a664d5837dbae44bf546e6477a679ff6610010f17276f686d867e8" +dependencies = [ + "clap_builder", +] + +[[package]] +name = "clap_builder" +version = "4.5.20" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4ea181bf566f71cb9a5d17a59e1871af638180a18fb0035c92ae62b705207123" +checksum = "19bc80abd44e4bed93ca373a0704ccbd1b710dc5749406201bb018272808dc54" dependencies = [ - "atty", - "bitflags", + "anstream", + "anstyle", "clap_lex", - "indexmap", "strsim", - "termcolor", - "textwrap 0.16.0", ] [[package]] name = "clap_lex" -version = "0.2.4" +version = "0.7.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2850f2f5a82cbf437dd5af4d49848fbdfc27c157c3d010345776f952765261c5" -dependencies = [ - "os_str_bytes", -] +checksum = "1462739cb27611015575c0c11df5df7601141071f07518d56fcc1be504cbec97" [[package]] name = "cobs" @@ -211,46 +255,40 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "67ba02a97a2bd10f4b59b25c7973101c79642302776489e030cd13cdab09ed15" [[package]] -name = "cortex-m" -version = "0.7.6" +name = "colorchoice" +version = "1.0.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "70858629a458fdfd39f9675c4dc309411f2a3f83bede76988d81bf1a0ecee9e0" -dependencies = [ - "bare-metal 0.2.5", - "bitfield", - "embedded-hal", - "volatile-register", -] +checksum = "5b63caa9aa9397e2d9480a9b13673856c78d8ac123288526c37d7839f2a86990" [[package]] name = "crc32fast" -version = "1.3.2" +version = "1.4.2" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b540bd8bc810d3885c6ea91e2018302f68baba2129ab3e88f32389ee9370880d" +checksum = "a97769d94ddab943e4510d138150169a2758b5ef3eb191a9ee688de3e23ef7b3" dependencies = [ "cfg-if", ] [[package]] name = "criterion" -version = "0.3.6" +version = "0.5.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b01d6de93b2b6c65e17c634a26653a29d107b3c98c607c765bf38d041531cd8f" +checksum = "f2b12d017a929603d80db1831cd3a24082f8137ce19c69e6447f54f5fc8d692f" dependencies = [ - "atty", + "anes", "cast", - "clap 2.34.0", + "ciborium", + "clap", "criterion-plot", - "csv", + "is-terminal", "itertools", - "lazy_static", "num-traits", + "once_cell", "oorandom", "plotters", "rayon", "regex", "serde", - "serde_cbor", "serde_derive", "serde_json", "tinytemplate", @@ -259,9 +297,9 @@ dependencies = [ [[package]] name = "criterion-plot" -version = "0.4.5" +version = "0.5.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2673cc8207403546f45f5fd319a974b1e6983ad1a3ee7e6041650013be041876" +checksum = "6b50826342786a51a89e2da3a28f1c32b06e387201bc2d19791f622c673706b1" dependencies = [ "cast", "itertools", @@ -269,80 +307,40 @@ dependencies = [ [[package]] name = "critical-section" -version = "0.2.7" +version = "1.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "95da181745b56d4bd339530ec393508910c909c784e8962d15d722bacf0bcbcd" -dependencies = [ - "bare-metal 1.0.0", - "cfg-if", - "cortex-m", - "riscv", -] - -[[package]] -name = "crossbeam-channel" -version = "0.5.6" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c2dd04ddaf88237dc3b8d8f9a3c1004b506b54b3313403944054d23c0870c521" -dependencies = [ - "cfg-if", - 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"instant", + "libc", + "windows-sys 0.52.0", ] +[[package]] +name = "fastrand" +version = "2.1.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "e8c02a5121d4ea3eb16a80748c74f5549a5665e4c21333c6098f283870fbdea6" + [[package]] name = "float-cmp" version = "0.9.0" @@ -418,7 +419,7 @@ dependencies = [ "libc", "libm", "num-complex", - "postcard 1.0.8", + "postcard 1.0.10", "serde", "thiserror", ] @@ -436,9 +437,13 @@ dependencies = [ [[package]] name = "half" -version = "1.8.2" +version = "2.4.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "eabb4a44450da02c90444cf74558da904edde8fb4e9035a9a6a4e15445af0bd7" +checksum = "6dd08c532ae367adf81c312a4580bc67f1d0fe8bc9c460520283f4c0ff277888" +dependencies = [ + "cfg-if", + "crunchy", +] [[package]] name = "hash32" @@ -451,19 +456,19 @@ dependencies = [ [[package]] name = "hashbrown" -version = "0.12.3" +version = "0.15.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8a9ee70c43aaf417c914396645a0fa852624801b24ebb7ae78fe8272889ac888" +checksum = "1e087f84d4f86bf4b218b927129862374b72199ae7d8657835f1e89000eea4fb" [[package]] name = "heapless" -version = "0.7.16" +version = "0.7.17" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "db04bc24a18b9ea980628ecf00e6c0264f3c1426dac36c00cb49b6fbad8b0743" +checksum = "cdc6457c0eb62c71aac4bc17216026d8410337c4126773b9c5daba343f17964f" dependencies = [ "atomic-polyfill", "hash32", - "rustc_version 0.4.0", + "rustc_version 0.4.1", "serde", "spin", "stable_deref_trait", @@ -477,28 +482,25 @@ checksum = "95505c38b4572b2d910cecb0281560f54b440a19336cbbcb27bf6ce6adc6f5a8" [[package]] name = "hermit-abi" -version = "0.1.19" +version = "0.4.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "62b467343b94ba476dcb2500d242dadbb39557df889310ac77c5d99100aaac33" -dependencies = [ - "libc", -] +checksum = "fbf6a919d6cf397374f7dfeeea91d974c7c0a7221d0d0f4f20d859d329e53fcc" [[package]] name = "indexmap" -version = "1.9.1" +version = "2.6.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "10a35a97730320ffe8e2d410b5d3b69279b98d2c14bdb8b70ea89ecf7888d41e" +checksum = "707907fe3c25f5424cce2cb7e1cbcafee6bdbe735ca90ef77c29e84591e5b9da" dependencies = [ - "autocfg", + "equivalent", "hashbrown", ] [[package]] name = "inline-c" -version = "0.1.7" +version = "0.1.8" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "340dd3d6102fa919bd20987024a6d84954c36ec691ac1efea37742ee983c8dd5" +checksum = "ced39871c8d450695c9ddf7999e06da4c05ba3135aba2407837b3e20a3bb6aa0" dependencies = [ "assert_cmd", "cc", @@ -513,9 +515,9 @@ dependencies = [ [[package]] name = "inline-c-macro" -version = "0.1.5" +version = "0.1.7" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "17f5621ec7adacda881d7c2826c064f5c29c72fd44333f97df61b458a583ae15" +checksum = "d9b2cedf6123f450eadb06a82fdcafc6d492af3ac9256afcb954ca307d6339da" dependencies = [ "proc-macro2", "quote", @@ -523,14 +525,22 @@ dependencies = [ ] [[package]] -name = "instant" -version = "0.1.12" +name = "is-terminal" +version = "0.4.13" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7a5bbe824c507c5da5956355e86a746d82e0e1464f65d862cc5e71da70e94b2c" +checksum = "261f68e344040fbd0edea105bef17c66edf46f984ddb1115b775ce31be948f4b" dependencies = [ - "cfg-if", + "hermit-abi", + "libc", + "windows-sys 0.52.0", ] +[[package]] +name = "is_terminal_polyfill" +version = "1.70.1" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "7943c866cc5cd64cbc25b2e01621d07fa8eb2a1a23160ee81ce38704e97b8ecf" + [[package]] name = "itertools" version = "0.10.5" @@ -542,30 +552,24 @@ dependencies = [ [[package]] name = "itoa" -version = "0.4.8" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "b71991ff56294aa922b450139ee08b3bfc70982c6b2c7562771375cf73542dd4" - -[[package]] -name = "itoa" -version = "1.0.4" +version = "1.0.11" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4217ad341ebadf8d8e724e264f13e593e0648f5b3e94b3896a5df283be015ecc" +checksum = "49f1f14873335454500d59611f1cf4a4b0f786f9ac11f4312a78e4cf2566695b" [[package]] name = "js-sys" -version = "0.3.60" +version = "0.3.72" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "49409df3e3bf0856b916e2ceaca09ee28e6871cf7d9ce97a692cacfdb2a25a47" +checksum = "6a88f1bda2bd75b0452a14784937d796722fdebfe50df998aeb3f0b7603019a9" dependencies = [ "wasm-bindgen", ] [[package]] name = "lazy_static" -version = "1.4.0" +version = "1.5.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e2abad23fbc42b3700f2f279844dc832adb2b2eb069b2df918f455c4e18cc646" +checksum = "bbd2bcb4c963f2ddae06a2efc7e9f3591312473c50c6685e1f298068316e66fe" [[package]] name = "lexical-core" @@ -574,7 +578,7 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "6607c62aa161d23d17a9072cc5da0be67cdfc89d3afb1e8d9c842bebc2525ffe" dependencies = [ "arrayvec", - "bitflags", + "bitflags 1.3.2", "cfg-if", "ryu", "static_assertions", @@ -582,15 +586,15 @@ dependencies = [ [[package]] name = "libc" -version = "0.2.134" +version = "0.2.161" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "329c933548736bc49fd575ee68c89e8be4d260064184389a5b77517cddd99ffb" +checksum = "8e9489c2807c139ffd9c1794f4af0ebe86a828db53ecdc7fea2111d0fed085d1" [[package]] name = "libflate" -version = "1.2.0" +version = "1.4.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "05605ab2bce11bcfc0e9c635ff29ef8b2ea83f29be257ee7d730cac3ee373093" +checksum = "5ff4ae71b685bbad2f2f391fe74f6b7659a34871c08b210fdc039e43bee07d18" dependencies = [ "adler32", "crc32fast", @@ -599,24 +603,30 @@ dependencies = [ [[package]] name = "libflate_lz77" -version = "1.1.0" +version = "1.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "39a734c0493409afcd49deee13c006a04e3586b9761a03543c6272c9c51f2f5a" +checksum = "a52d3a8bfc85f250440e4424db7d857e241a3aebbbe301f3eb606ab15c39acbf" dependencies = [ "rle-decode-fast", ] [[package]] name = "libm" -version = "0.2.8" +version = "0.2.9" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "4ec2a862134d2a7d32d7983ddcdd1c4923530833c9f2ea1a44fc5fa473989058" +checksum = "3bda4c6077b0b08da2c48b172195795498381a7c8988c9e6212a6c55c5b9bd70" + +[[package]] +name = "linux-raw-sys" +version = "0.4.14" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "78b3ae25bc7c8c38cec158d1f2757ee79e9b3740fbc7ccf0e59e4b08d793fa89" [[package]] name = "lock_api" -version = "0.4.9" +version = "0.4.12" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "435011366fe56583b16cf956f9df0095b405b82d76425bc8981c0e22e60ec4df" +checksum = "07af8b9cdd281b7915f413fa73f29ebd5d55d0d3f0155584dade1ff18cea1b17" dependencies = [ "autocfg", "scopeguard", @@ -624,12 +634,9 @@ dependencies = [ [[package]] name = "log" -version = "0.4.17" +version = "0.4.22" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "abb12e687cfb44aa40f41fc3978ef76448f9b6038cad6aef4259d3c095a2382e" -dependencies = [ - "cfg-if", -] +checksum = "a7a70ba024b9dc04c27ea2f0c0548feb474ec5c54bba33a7f72f873a39d07b24" [[package]] name = "matfile" @@ -647,42 +654,19 @@ dependencies = [ [[package]] name = "matrixmultiply" -version = "0.3.2" +version = "0.3.9" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "add85d4dd35074e6fedc608f8c8f513a3548619a9024b751949ef0e8e45a4d84" +checksum = "9380b911e3e96d10c1f415da0876389aaf1b56759054eeb0de7df940c456ba1a" dependencies = [ + "autocfg", "rawpointer", ] [[package]] name = "memchr" -version = "2.5.0" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "2dffe52ecf27772e601905b7522cb4ef790d2cc203488bbd0e2fe85fcb74566d" - -[[package]] -name = "memoffset" -version = "0.6.5" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5aa361d4faea93603064a027415f07bd8e1d5c88c9fbf68bf56a285428fd79ce" -dependencies = [ - "autocfg", -] - -[[package]] -name = "nb" -version = "0.1.3" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "801d31da0513b6ec5214e9bf433a77966320625a37860f910be265be6e18d06f" -dependencies = [ - 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"nodes": { - "naersk": { - "inputs": { - "nixpkgs": [ - "nixpkgs" - ] - }, - "locked": { - "lastModified": 1639947939, - "narHash": "sha256-pGsM8haJadVP80GFq4xhnSpNitYNQpaXk4cnA796Cso=", - "owner": "nix-community", - "repo": "naersk", - "rev": "2fc8ce9d3c025d59fee349c1f80be9785049d653", - "type": "github" - }, - "original": { - "owner": "nix-community", - "repo": "naersk", - "type": "github" - } - }, - "nixpkgs": { - "locked": { - "lastModified": 1645937171, - "narHash": "sha256-n9f9GZBNMe8UMhcgmmaXNObkH01jjgp7INMrUgBgcy4=", - "owner": "NixOS", - "repo": "nixpkgs", - "rev": "22dc22f8cedc58fcb11afe1acb08e9999e78be9c", - "type": "github" - }, - "original": { - "owner": "NixOS", - "ref": "nixpkgs-unstable", - "repo": "nixpkgs", - "type": "github" - } - }, - "root": { - "inputs": { - "naersk": "naersk", - "nixpkgs": "nixpkgs", - "rust-overlay": "rust-overlay", - "utils": "utils" - } - }, - "rust-overlay": { - "inputs": { - "flake-utils": [ - "utils" - ], - "nixpkgs": [ - "nixpkgs" - ] - }, - "locked": { - "lastModified": 1645928338, - "narHash": "sha256-pNbkG19Nb4QTNRCIWwxv06JKKJNCUrDzgRrriEd7W1A=", - "owner": "oxalica", - "repo": "rust-overlay", - "rev": "4f6e6588b07427cd8ddc99b664bf0fab02799804", - "type": "github" - }, - "original": { - "owner": "oxalica", - "repo": "rust-overlay", - "type": "github" - } - }, - "utils": { - "locked": { - "lastModified": 1644229661, - "narHash": "sha256-1YdnJAsNy69bpcjuoKdOYQX0YxZBiCYZo4Twxerqv7k=", - "owner": "numtide", - "repo": "flake-utils", - "rev": "3cecb5b042f7f209c56ffd8371b2711a290ec797", - "type": "github" - }, - "original": { - "owner": "numtide", - "repo": "flake-utils", - "type": "github" - } - } - }, - "root": "root", - "version": 7 -} diff --git a/flake.nix b/flake.nix deleted file mode 100644 index 052d79c2..00000000 --- a/flake.nix +++ /dev/null @@ -1,82 +0,0 @@ -{ - - inputs = { - nixpkgs.url = "github:NixOS/nixpkgs/nixpkgs-unstable"; - utils.url = "github:numtide/flake-utils"; - - rust-overlay = { - url = "github:oxalica/rust-overlay"; - inputs = { - nixpkgs.follows = "nixpkgs"; - flake-utils.follows = "utils"; - }; - }; - - naersk = { - url = "github:nix-community/naersk"; - inputs = { - nixpkgs.follows = "nixpkgs"; - flake-utils.follows = "utils"; - }; - }; - }; - - outputs = { self, nixpkgs, naersk, rust-overlay, utils }: - utils.lib.eachDefaultSystem (system: - let - overlays = [ (import rust-overlay) ]; - pkgs = import nixpkgs { - inherit system overlays; - }; - rust = pkgs.rust-bin.stable.latest.default.override { - #extensions = [ "rust-src" ]; - #targets = [ "x86_64-unknown-linux-musl" ]; - targets = [ "wasm32-wasi" "wasm32-unknown-unknown" "wasm32-unknown-emscripten" ]; - }; - naersk-lib = naersk.lib."${system}".override { - cargo = rust; - rustc = rust; - }; - in - - with pkgs; - { - defaultPackage = naersk-lib.buildPackage { - pname = "gsw"; - root = ./.; - }; - - devShell = mkShell { - nativeBuildInputs = [ - clang_13 - ]; - - buildInputs = [ - rust - openssl - pkgconfig - - llvmPackages_13.libclang - llvmPackages_13.libcxxClang - - git - gdb - - cargo-watch - cargo-c - cargo-asm - cargo-outdated - cargo-criterion - ripgrep - - (python39.withPackages (ps: with ps; [ virtualenv setuptools mypy tox ])) - ]; - - BINDGEN_EXTRA_CLANG_ARGS = "-isystem ${llvmPackages_13.libclang.lib}/lib/clang/${lib.getVersion clang}/include"; - LIBCLANG_PATH = "${llvmPackages_13.libclang.lib}/lib"; - - # workaround for https://github.com/NixOS/nixpkgs/blob/48dfc9fa97d762bce28cc8372a2dd3805d14c633/doc/languages-frameworks/python.section.md#python-setuppy-bdist_wheel-cannot-create-whl - SOURCE_DATE_EPOCH = 315532800; # 1980 - }; - }); -} diff --git a/pixi.lock b/pixi.lock new file mode 100644 index 00000000..16eb7696 --- /dev/null +++ b/pixi.lock @@ -0,0 +1,6618 @@ +version: 5 +environments: + default: + channels: + - url: https://conda.anaconda.org/conda-forge/ + packages: + linux-64: + - conda: https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2 + - conda: https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_gnu.tar.bz2 + - 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__osx >=11.0 + - libzlib >=1.2.13,<2.0.0a0 + license: BSD-3-Clause + license_family: BSD + size: 405089 + timestamp: 1714723101397 diff --git a/pixi.toml b/pixi.toml new file mode 100644 index 00000000..3dd1460a --- /dev/null +++ b/pixi.toml @@ -0,0 +1,23 @@ +[project] +name = "gsw" +version = "0.2.1" +description = "Asynchronous download of support data" +authors = ["Guilherme Castelao ", "Luiz Irber "] +channels = ["conda-forge"] +platforms = ["linux-64", "osx-arm64"] + +[tasks] + +[dependencies] +rust = ">=1.79.0,<1.80" +compilers = ">=1.7.0,<1.8" +clangdev = ">=16.0.6,<17.1" +libclang = ">=16.0.6,<17.1" +cargo-c = ">=0.9.30,<0.10" +make = ">=4.3,<5" +python = "==3.11" +pytest = ">=8.3.2,<8.4" +dask = ">=2024.7.1,<2024.8" +xarray = ">=2024.6.0,<2024.7" +pip = ">=24.0,<25" +numpy = "<2.0" diff --git a/shell.nix b/shell.nix deleted file mode 100644 index 47458ad8..00000000 --- a/shell.nix +++ /dev/null @@ -1,10 +0,0 @@ -(import - ( - fetchTarball { - url = "https://github.com/edolstra/flake-compat/archive/99f1c2157fba4bfe6211a321fd0ee43199025dbf.tar.gz"; - sha256 = "0x2jn3vrawwv9xp15674wjz9pixwjyj3j771izayl962zziivbx2"; - } - ) - { - src = ./.; - }).shellNix diff --git a/tests/conversions.rs b/tests/conversions.rs index d44ffad8..0b66c408 100644 --- a/tests/conversions.rs +++ b/tests/conversions.rs @@ -1,3 +1,5 @@ +#![cfg(not(feature = "capi"))] + use heapless::{FnvIndexMap, String, Vec}; use postcard::from_bytes; use serde::{Deserialize, Serialize}; diff --git a/tests/earth.rs b/tests/earth.rs index 9b45912c..9e8210db 100644 --- a/tests/earth.rs +++ b/tests/earth.rs @@ -1,3 +1,5 @@ +#![cfg(not(feature = "capi"))] + use heapless::{FnvIndexMap, String, Vec}; use postcard::from_bytes; use serde::{Deserialize, Serialize}; diff --git a/tests/practical_salinity.rs b/tests/practical_salinity.rs index 6052b75a..bed92384 100644 --- a/tests/practical_salinity.rs +++ b/tests/practical_salinity.rs @@ -1,3 +1,5 @@ +#![cfg(not(feature = "capi"))] + use heapless::{FnvIndexMap, String, Vec}; use postcard::from_bytes; use serde::{Deserialize, Serialize}; diff --git a/tests/volume.rs b/tests/volume.rs index 0052710b..9c1469bb 100644 --- a/tests/volume.rs +++ b/tests/volume.rs @@ -1,3 +1,5 @@ +#![cfg(not(feature = "capi"))] + use heapless::{FnvIndexMap, String, Vec}; use postcard::from_bytes; use serde::{Deserialize, Serialize};