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Hello,
Thank you for maintaining this project. I downloaded models from BioModels which are in SBML Level 2, hence incompatible with rust_sbml which follows the Level 3 specification. Is there a plan to support Level 2 (and possibly Level 1) in rust_sbml? If so, I would be very happy to contribute. What would be the best way to make the different levels coexist within the library?
The text was updated successfully, but these errors were encountered:
It would be fantastic to support them. However, to give an answer about "best way", I would need to study the problem a bit.
Iff the Level 1 and 2 are merely a subset of Level 3, it could be implemented through #[serde(flatten)]. More likely, It may turn out to be the same problem as extensions, which is something that I am not very sure how to tackle best: I want to find some elegant way to mimic the "inheritance" of these extensions without duplicating too much code.
With that said, feel free to prototype and experiment! I am open to suggestions and PRs, of course.
Ok, thank you for your answer! From what I can see, it is unfortunately not just subsets: some fields that are optional in Level 2 are required in Level 3. I will experiment a bit and come back here later. I downloaded the 1017 curated models of Biomodels and have plenty of real-world examples to try (for information, 93 of them are Level 3 and the rest are Level 2).
Hello,
Thank you for maintaining this project. I downloaded models from BioModels which are in SBML Level 2, hence incompatible with
rust_sbml
which follows the Level 3 specification. Is there a plan to support Level 2 (and possibly Level 1) inrust_sbml
? If so, I would be very happy to contribute. What would be the best way to make the different levels coexist within the library?The text was updated successfully, but these errors were encountered: