From c7ae168eed9c8cd6f158174e7d328add1ae7488f Mon Sep 17 00:00:00 2001 From: Renata Curty <63265343+rcurty@users.noreply.github.com> Date: Mon, 5 Feb 2024 09:27:38 -0800 Subject: [PATCH 1/2] Add contributors and reorg --- README.md | 18 +++++++++++++----- 1 file changed, 13 insertions(+), 5 deletions(-) diff --git a/README.md b/README.md index 0535fec..8da8188 100644 --- a/README.md +++ b/README.md @@ -2,7 +2,7 @@ *Attention!* This is NOT the lesson repository. This is the GitHub repository for the project example used in the [Introduction to Reproducible Publications with Quarto](https://github.com/UCSBCarpentry/Reproducible-Publications-with-RStudio-Quarto) **FIXME: UPDATE LINK WHEN PR TO INCUBATOR IS COMPLETED"**. Learners will be required to download the project example in order to follow along. -**The project example folder is a simplified version of the original project available at: https://osf.io/6mvq7.** +**The project example folder is a simplified version of the original project available at: [https://osf.io/6mvq7](https://osf.io/6mvq7).** Our example uses an adapted version of the data paper: Nitsch, F. J., Sellitto, M., & Kalenscher, T. (2021). The effects of acute and chronic stress on choice consistency. Psychoneuroendocrinology, 131, 105289. https://doi.org/10.1016/j.psyneuen.2021.105289. The data paper along with its underlying data publicly available at: https://osf.io/6mvq7 were adapted and used for educational purposes with the authors' permission. @@ -41,21 +41,29 @@ root: To repeat the analyses, 1. Open the RStudio Project file. -2. Open and run analyses scripts (in order) +2. Open and run analysis scripts (in order) Graphic output is saved to output/plots Data output is saved to output/data -Analysis results are saved in environment / printed to console +Analysis results are saved in the environment / printed to the console Paper output is saved to paper/output paper/bin contains external files/code necessary for the proper formatting of the R Markdown paper output. +The `renv` branch has the same content as the `main` branch with the addition of having [renv](https://rstudio.github.io/renv/articles/renv.html) enabled for better reproducibility. + Please see citation.md for instructions on how to cite this workshop. Please see License.md for instructions on how to re-use this material. Enjoy! -PS: For questions please email ucsbcarpentry (@) ucsb.edu. +PS: For questions, please email ucsbcarpentry (@) ucsb.edu. +Contributors: -The `renv` branch has the same content as the `main` branch with the addition of having [renv](https://rstudio.github.io/renv/articles/renv.html) enabled for better reproducibility. +Renata Curty (rcurty) +Torin White (torwhite) +Ian Lessing (ilessing) +Greg Janee (gjanee) +Julien Brun (brunj7) +kristi Liu (kristi-sara) From f560cdef788353df83317ba3effa671e15d5d229 Mon Sep 17 00:00:00 2001 From: Renata Curty <63265343+rcurty@users.noreply.github.com> Date: Mon, 5 Feb 2024 09:30:03 -0800 Subject: [PATCH 2/2] wordsmithing --- README.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 8da8188..e9fce66 100644 --- a/README.md +++ b/README.md @@ -1,10 +1,10 @@ # Project Example for: Introduction to Reproducible Publications with Quarto Workshop -*Attention!* This is NOT the lesson repository. This is the GitHub repository for the project example used in the [Introduction to Reproducible Publications with Quarto](https://github.com/UCSBCarpentry/Reproducible-Publications-with-RStudio-Quarto) **FIXME: UPDATE LINK WHEN PR TO INCUBATOR IS COMPLETED"**. Learners will be required to download the project example in order to follow along. +*Attention!* This is NOT the lesson repository. This is the GitHub repository for the project example used in the [Introduction to Reproducible Publications with Quarto](https://github.com/carpentries-incubator/reproducible-publications-quarto)). Learners will be required to download the project example in order to follow along and complete challenges and exercises. **The project example folder is a simplified version of the original project available at: [https://osf.io/6mvq7](https://osf.io/6mvq7).** -Our example uses an adapted version of the data paper: Nitsch, F. J., Sellitto, M., & Kalenscher, T. (2021). The effects of acute and chronic stress on choice consistency. Psychoneuroendocrinology, 131, 105289. https://doi.org/10.1016/j.psyneuen.2021.105289. The data paper along with its underlying data publicly available at: https://osf.io/6mvq7 were adapted and used for educational purposes with the authors' permission. +Our example uses an adapted version of the data paper: Nitsch, F. J., Sellitto, M., & Kalenscher, T. (2021). The effects of acute and chronic stress on choice consistency. Psychoneuroendocrinology, 131, 105289. https://doi.org/10.1016/j.psyneuen.2021.105289. The data paper and its underlying data were adapted and used for educational purposes with the authors' permission. ------------------------------ ## README