data.rst

github_url:	https://github.com/Project-MONAI/MONAI

Data

Generic Interfaces

.. currentmodule:: monai.data

Dataset

.. autoclass:: Dataset
  :members:
  :special-members: __getitem__

IterableDataset

.. autoclass:: IterableDataset
  :members:
  :special-members: __next__

DatasetFunc

.. autoclass:: DatasetFunc
  :members:
  :special-members: __next__

ShuffleBuffer

.. autoclass:: ShuffleBuffer
  :members:
  :special-members: __next__

CSVIterableDataset

.. autoclass:: CSVIterableDataset
  :members:
  :special-members: __next__

PersistentDataset

.. autoclass:: PersistentDataset
  :members:
  :special-members: __getitem__

CacheNTransDataset

.. autoclass:: CacheNTransDataset
  :members:
  :special-members: __getitem__

LMDBDataset

.. autoclass:: LMDBDataset
  :members:
  :special-members: __getitem__

CacheDataset

.. autoclass:: CacheDataset
  :members:
  :special-members: __getitem__

SmartCacheDataset

.. autoclass:: SmartCacheDataset
  :members:
  :special-members: __getitem__

ZipDataset

.. autoclass:: ZipDataset
  :members:
  :special-members: __getitem__

ArrayDataset

.. autoclass:: ArrayDataset
  :members:
  :special-members: __getitem__

ImageDataset

.. autoclass:: ImageDataset
  :members:
  :special-members: __getitem__

NPZDictItemDataset

.. autoclass:: NPZDictItemDataset
  :members:
  :special-members: __getitem__

CSVDataset

.. autoclass:: CSVDataset
  :members:
  :special-members: __getitem__

Patch-based dataset

GridPatchDataset

.. autoclass:: GridPatchDataset
  :members:

PatchDataset

.. autoclass:: PatchDataset
  :members:

PatchIter

.. autoclass:: PatchIter
    :members:
    :special-members: __call__

PatchIterd

.. autoclass:: PatchIterd
    :members:
    :special-members: __call__

Image reader

ImageReader

.. autoclass:: ImageReader
  :members:

ITKReader

.. autoclass:: ITKReader
  :members:

NibabelReader

.. autoclass:: NibabelReader
  :members:

NumpyReader

.. autoclass:: NumpyReader
  :members:

PILReader

.. autoclass:: PILReader
  :members:

Image writer

resolve_writer

.. autofunction:: resolve_writer

register_writer

.. autofunction:: register_writer

ImageWriter

.. autoclass:: ImageWriter
  :members:

ITKWriter

.. autoclass:: ITKWriter
  :members:

NibabelWriter

.. autoclass:: NibabelWriter
  :members:

PILWriter

.. autoclass:: PILWriter
  :members:

Synthetic

.. automodule:: monai.data.synthetic
  :members:

Ouput folder layout

.. automodule:: monai.data.folder_layout
  :members:

Utilities

.. automodule:: monai.data.utils
  :members:

Partition Dataset

.. autofunction:: monai.data.partition_dataset

Partition Dataset based on classes

.. autofunction:: monai.data.partition_dataset_classes

DistributedSampler

.. autoclass:: monai.data.DistributedSampler

DistributedWeightedRandomSampler

.. autoclass:: monai.data.DistributedWeightedRandomSampler

DatasetSummary

.. autoclass:: monai.data.DatasetSummary

Decathlon Datalist

.. autofunction:: monai.data.load_decathlon_datalist

.. autofunction:: monai.data.load_decathlon_properties

.. autofunction:: monai.data.check_missing_files

.. autofunction:: monai.data.create_cross_validation_datalist

DataLoader

.. autoclass:: monai.data.DataLoader

ThreadBuffer

.. autoclass:: monai.data.ThreadBuffer

ThreadDataLoader

.. autoclass:: monai.data.ThreadDataLoader

TestTimeAugmentation

.. autoclass:: monai.data.TestTimeAugmentation

N-Dim Fourier Transform

.. automodule:: monai.data.fft_utils

.. autofunction:: monai.data.fft_utils.fftn_centered

.. autofunction:: monai.data.fft_utils.ifftn_centered

Meta Object

.. automodule:: monai.data.meta_obj
  :members:

MetaTensor

.. autoclass:: monai.data.MetaTensor
  :members:
  :show-inheritance:
  :inherited-members: MetaObj

Whole slide image reader

BaseWSIReader

.. autoclass:: monai.data.BaseWSIReader
  :members:

WSIReader

.. autoclass:: monai.data.WSIReader
  :members:

CuCIMWSIReader

.. autoclass:: monai.data.CuCIMWSIReader
  :members:

OpenSlideWSIReader

.. autoclass:: monai.data.OpenSlideWSIReader
  :members:

TiffFileWSIReader

.. autoclass:: monai.data.TiffFileWSIReader
  :members:

Whole slide image datasets

PatchWSIDataset

.. autoclass:: monai.data.PatchWSIDataset
    :members:

MaskedPatchWSIDataset

.. autoclass:: monai.data.MaskedPatchWSIDataset
    :members:

SlidingPatchWSIDataset

.. autoclass:: monai.data.SlidingPatchWSIDataset
    :members:

Bounding box

.. automodule:: monai.data.box_utils
    :members:

Video datasets

VideoDataset

.. autoclass:: monai.data.video_dataset.VideoDataset

VideoFileDataset

.. autoclass:: monai.data.video_dataset.VideoFileDataset

CameraDataset

.. autoclass:: monai.data.video_dataset.CameraDataset