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CASM-Smart-Phase

0.1.8

  • Copy correct version of jar file to final image

0.1.7

  • multiple pass only filters now marked as a single PASS in merge output

0.1.6

  • Correct homozygous marked bed file reading

0.1.5

  • No longer count non matching zygosity as within an MNV

0.1.4

  • Fix issue in MNV merging

0.1.3

  • generate-bed now uses column 5 (score) rather than 'name' to avoid clashes with smart-phase workings.
  • smart-phase version updated to v1.2.1

0.1.2

  • Fix bug in generate-bed output

0.1.1

  • Add option to mark homozygous in the bed generation step.

Smart-phase doesn't phase homozygous changes, so we merge these in manually using the marked bed file at the merged vcf step

0.1.0

0.0.1

  • First release, no Smart-Phase, only utility python scripts