NAMESPACE

# Generated by roxygen2: do not edit by hand

export(average_marker_expression_within_radius)
export(average_minimum_distance)
export(calculate_all_distances_between_phenotypes)
export(calculate_cell_proportions)
export(calculate_summary_distances_between_phenotypes)
export(composition_of_clusters_and_communities)
export(compute_mixing_score)
export(format_image_to_sce)
export(identify_bordering_cells)
export(identify_cell_clusters)
export(identify_cell_communities)
export(image_splitter)
export(marker_expression_boxplot)
export(marker_permutation)
export(marker_prediction_plot)
export(marker_surface_plot)
export(marker_surface_plot_stack)
export(percentage_of_cells_within_radius)
export(plot_average_expression)
export(plot_cell_categories)
export(plot_cell_distances_violin)
export(plot_cell_marker_levels)
export(plot_cell_percentages)
export(plot_composition_heatmap)
export(plot_distance_heatmap)
export(plot_marker_level_heatmap)
export(predict_phenotypes)
export(print_phenotypes)
export(select_phenotypes)
import(RColorBrewer)
import(Rphenograph)
import(SingleCellExperiment)
import(apcluster)
import(dplyr)
import(ggplot2)
import(grDevices)
import(gridExtra)
import(igraph)
import(pheatmap)
import(plotly)
import(qpdf)
import(stats)
importFrom(RANN,nn2)
importFrom(RColorBrewer,brewer.pal)
importFrom(apcluster,negDistMat)
importFrom(dbscan,dbscan)
importFrom(dbscan,frNN)
importFrom(grDevices,dev.off)
importFrom(grDevices,pdf)
importFrom(gtools,permutations)
importFrom(mmand,threshold)
importFrom(plotly,add_surface)
importFrom(plotly,add_trace)
importFrom(plotly,plot_ly)
importFrom(pracma,findpeaks)
importFrom(reshape2,dcast)
importFrom(reshape2,melt)
importFrom(stats,aggregate)
importFrom(stats,complete.cases)
importFrom(stats,cutree)
importFrom(stats,density)
importFrom(stats,hclust)
importFrom(stats,setNames)
importFrom(tibble,rownames_to_column)
importFrom(utils,combn)
importFrom(utils,read.csv)
importFrom(utils,read.delim)