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CHANGELOG.md

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Changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog and this project adheres to Semantic Versioning.

UNRELEASED

[0.6.0]

  • Improve correctness of the vossmatrix for 2-bit sequences.
  • Add support for Strings

[0.5.0]

  • Migrate VE to be bioseq type specific (#9) (@camilogarciabotero)

[0.4.0]

  • Massive renaming of methods and structs

  • Improves API documentation

  • Improved tests included the Aqua tests

  • Improved the general documentation of the package and clean README

[0.3.0]

  • Fixed a bug in the show method of BinarySequenceMatrix that was causing the REPL to crash when displaying a BinarySequenceMatrix with more than 10 rows.

  • Fixed a bug in the binaryseq method that was causing the method to fail for AminoAcid sequences. It is now slower but safe and robust.

  • Add multiple tests to all methods.

  • Add Aqua tests to the package.

  • Improve and update API documentation.

[0.2.0]

  • Amino acid sequences are now encoded as well method.
  • The BinarySequenceMatrix methods are now way faster by exploiting internals this is an implementation suggested by @jakobnissen. For a more safe implementation see the recipe in the BioSequence.jl package.
  • The BinarySequenceMatrix is now beautifully displayed in the REPL.
  • A new convinient method binaryseq(seq::BioSeq, molecule::BioSymbol) is now exported to create one-hot vecotor of a sequence and a given BioSymbol molecule.

[0.1.0]

  • This is the first release of the BioVossEncoder.jl package.