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Permission denied rase_predict.py #3

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karel-brinda opened this issue Feb 7, 2019 · 0 comments
Open

Permission denied rase_predict.py #3

karel-brinda opened this issue Feb 7, 2019 · 0 comments
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@karel-brinda
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$ rase database/spneumoniae_sparc.k18 ./reads/reads_pass.fq pass.bam | tee pass.tsv
[prophyle] 2019-02-07 13:21:05 Index already exists
Traceback (most recent call last):
  File "/Users/karel/miniconda/envs/rase/bin/rase", line 10, in <module>
    sys.exit(main())
  File "/Users/karel/miniconda/envs/rase/lib/python3.6/site-packages/rase/rase.py", line 108, in main
    rase(db=args.rase_db, reads_fn=args.reads, bam_fn=out_bam)
  File "/Users/karel/miniconda/envs/rase/lib/python3.6/site-packages/rase/rase.py", line 80, in rase
    process_predict = subprocess.Popen(cmd_predict, stdin=process_classify.stdout, shell=False)
  File "/Users/karel/miniconda/envs/rase/lib/python3.6/subprocess.py", line 709, in __init__
    restore_signals, start_new_session)
  File "/Users/karel/miniconda/envs/rase/lib/python3.6/subprocess.py", line 1344, in _execute_child
    raise child_exception_type(errno_num, err_msg, err_filename)
PermissionError: [Errno 13] Permission denied: '/Users/karel/miniconda/envs/rase/lib/python3.6/site-packages/rase/rase_predict.py'
@karel-brinda karel-brinda added the bug Something isn't working label Feb 19, 2019
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