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$ rase database/spneumoniae_sparc.k18 ./reads/reads_pass.fq pass.bam | tee pass.tsv [prophyle] 2019-02-07 13:21:05 Index already exists Traceback (most recent call last): File "/Users/karel/miniconda/envs/rase/bin/rase", line 10, in <module> sys.exit(main()) File "/Users/karel/miniconda/envs/rase/lib/python3.6/site-packages/rase/rase.py", line 108, in main rase(db=args.rase_db, reads_fn=args.reads, bam_fn=out_bam) File "/Users/karel/miniconda/envs/rase/lib/python3.6/site-packages/rase/rase.py", line 80, in rase process_predict = subprocess.Popen(cmd_predict, stdin=process_classify.stdout, shell=False) File "/Users/karel/miniconda/envs/rase/lib/python3.6/subprocess.py", line 709, in __init__ restore_signals, start_new_session) File "/Users/karel/miniconda/envs/rase/lib/python3.6/subprocess.py", line 1344, in _execute_child raise child_exception_type(errno_num, err_msg, err_filename) PermissionError: [Errno 13] Permission denied: '/Users/karel/miniconda/envs/rase/lib/python3.6/site-packages/rase/rase_predict.py'
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