diff --git a/Cargo.lock b/Cargo.lock index 2920e76..6ccc524 100644 --- a/Cargo.lock +++ b/Cargo.lock @@ -4,9 +4,9 @@ version = 3 [[package]] name = "ahash" -version = "0.8.7" +version = "0.8.10" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "77c3a9648d43b9cd48db467b3f87fdd6e146bcc88ab0180006cef2179fe11d01" +checksum = "8b79b82693f705137f8fb9b37871d99e4f9a7df12b917eed79c3d3954830a60b" dependencies = [ "cfg-if", "getrandom", @@ -17,9 +17,9 @@ dependencies = [ [[package]] name = "anstream" -version = "0.6.5" +version = "0.6.13" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "d664a92ecae85fd0a7392615844904654d1d5f5514837f471ddef4a057aba1b6" +checksum = "d96bd03f33fe50a863e394ee9718a706f988b9079b20c3784fb726e7678b62fb" dependencies = [ "anstyle", "anstyle-parse", @@ -31,9 +31,9 @@ dependencies = [ [[package]] name = "anstyle" -version = "1.0.4" +version = "1.0.6" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "7079075b41f533b8c61d2a4d073c4676e1f8b249ff94a393b0595db304e0dd87" +checksum = "8901269c6307e8d93993578286ac0edf7f195079ffff5ebdeea6a59ffb7e36bc" [[package]] name = "anstyle-parse" @@ -87,17 +87,11 @@ dependencies = [ "serde", ] -[[package]] -name = "bitflags" -version = "2.4.1" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "327762f6e5a765692301e5bb513e0d9fef63be86bbc14528052b1cd3e6f03e07" - [[package]] name = "bytemuck" -version = "1.14.0" +version = "1.14.3" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "374d28ec25809ee0e23827c2ab573d729e293f281dfe393500e7ad618baa61c6" +checksum = "a2ef034f05691a48569bd920a96c81b9d91bbad1ab5ac7c4616c1f6ef36cb79f" [[package]] name = "cfg-if" @@ -107,9 +101,9 @@ checksum = "baf1de4339761588bc0619e3cbc0120ee582ebb74b53b4efbf79117bd2da40fd" [[package]] name = "clap" -version = "4.4.15" +version = "4.5.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c12ed66a79a555082f595f7eb980d08669de95009dd4b3d61168c573ebe38fc9" +checksum = "c918d541ef2913577a0f9566e9ce27cb35b6df072075769e0b26cb5a554520da" dependencies = [ "clap_builder", "clap_derive", @@ -117,9 +111,9 @@ dependencies = [ [[package]] name = "clap_builder" -version = "4.4.15" +version = "4.5.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0f4645eab3431e5a8403a96bea02506a8b35d28cd0f0330977dd5d22f9c84f43" +checksum = "9f3e7391dad68afb0c2ede1bf619f579a3dc9c2ec67f089baa397123a2f3d1eb" dependencies = [ "anstream", "anstyle", @@ -129,21 +123,21 @@ dependencies = [ [[package]] name = "clap_derive" -version = "4.4.7" +version = "4.5.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "cf9804afaaf59a91e75b022a30fb7229a7901f60c755489cc61c9b423b836442" +checksum = "307bc0538d5f0f83b8248db3087aa92fe504e4691294d0c96c0eabc33f47ba47" dependencies = [ "heck", "proc-macro2", "quote", - "syn 2.0.48", + "syn 2.0.52", ] [[package]] name = "clap_lex" -version = "0.6.0" +version = "0.7.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "702fc72eb24e5a1e48ce58027a675bc24edd52096d5397d4aea7c6dd9eca0bd1" +checksum = "98cc8fbded0c607b7ba9dd60cd98df59af97e84d24e49c8557331cfc26d301ce" [[package]] name = "colorchoice" @@ -205,19 +199,9 @@ checksum = "56254986775e3233ffa9c4d7d3faaf6d36a2c09d30b20687e9f88bc8bafc16c8" [[package]] name = "either" -version = "1.9.0" +version = "1.10.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a26ae43d7bcc3b814de94796a5e736d4029efb0ee900c12e2d54c993ad1a1e07" - -[[package]] -name = "errno" -version = "0.3.8" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a258e46cdc063eb8519c00b9fc845fc47bcfca4130e2f08e88665ceda8474245" -dependencies = [ - "libc", - "windows-sys", -] +checksum = "11157ac094ffbdde99aa67b23417ebdd801842852b500e395a45a9c0aac03e4a" [[package]] name = "getrandom" @@ -238,26 +222,26 @@ checksum = "95505c38b4572b2d910cecb0281560f54b440a19336cbbcb27bf6ce6adc6f5a8" [[package]] name = "hermit-abi" -version = "0.3.3" +version = "0.3.9" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "d77f7ec81a6d05a3abb01ab6eb7590f6083d08449fe5a1c8b1e620283546ccb7" +checksum = "d231dfb89cfffdbc30e7fc41579ed6066ad03abda9e567ccafae602b97ec5024" [[package]] name = "is-terminal" -version = "0.4.10" +version = "0.4.12" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0bad00257d07be169d870ab665980b06cdb366d792ad690bf2e76876dc503455" +checksum = "f23ff5ef2b80d608d61efee834934d862cd92461afc0560dedf493e4c033738b" dependencies = [ "hermit-abi", - "rustix", + "libc", "windows-sys", ] [[package]] name = "is_ci" -version = "1.1.1" +version = "1.2.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "616cde7c720bb2bb5824a224687d8f77bfd38922027f01d825cd7453be5099fb" +checksum = "7655c9839580ee829dfacba1d1278c2b7883e50a277ff7541299489d6bdfdc45" [[package]] name = "itoa" @@ -273,9 +257,9 @@ checksum = "e2abad23fbc42b3700f2f279844dc832adb2b2eb069b2df918f455c4e18cc646" [[package]] name = "libc" -version = "0.2.152" +version = "0.2.153" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "13e3bf6590cbc649f4d1a3eefc9d5d6eb746f5200ffb04e5e142700b8faa56e7" +checksum = "9c198f91728a82281a64e1f4f9eeb25d82cb32a5de251c6bd1b5154d63a8e7bd" [[package]] name = "libm" @@ -283,12 +267,6 @@ version = "0.2.8" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "4ec2a862134d2a7d32d7983ddcdd1c4923530833c9f2ea1a44fc5fa473989058" -[[package]] -name = "linux-raw-sys" -version = "0.4.12" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c4cd1a83af159aa67994778be9070f0ae1bd732942279cabb14f86f986a21456" - [[package]] name = "matrixmultiply" version = "0.3.8" @@ -336,20 +314,19 @@ dependencies = [ [[package]] name = "num-complex" -version = "0.4.4" +version = "0.4.5" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1ba157ca0885411de85d6ca030ba7e2a83a28636056c7c699b07c8b6f7383214" +checksum = "23c6602fda94a57c990fe0df199a035d83576b496aa29f4e634a8ac6004e68a6" dependencies = [ "num-traits", ] [[package]] name = "num-integer" -version = "0.1.45" +version = "0.1.46" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "225d3389fb3509a24c93f5c29eb6bde2586b98d9f016636dff58d7c6f7569cd9" +checksum = "7969661fd2958a5cb096e56c8e1ad0444ac2bbcd0061bd28660485a44879858f" dependencies = [ - "autocfg", "num-traits", ] @@ -366,9 +343,9 @@ dependencies = [ [[package]] name = "num-traits" -version = "0.2.17" +version = "0.2.18" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "39e3200413f237f41ab11ad6d161bc7239c84dcb631773ccd7de3dfe4b5c267c" +checksum = "da0df0e5185db44f69b44f26786fe401b6c293d1907744beaa7fa62b2e5a517a" dependencies = [ "autocfg", "libm", @@ -413,9 +390,9 @@ dependencies = [ [[package]] name = "proc-macro2" -version = "1.0.76" +version = "1.0.78" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "95fc56cda0b5c3325f5fbbd7ff9fda9e02bb00bb3dac51252d2f1bfa1cb8cc8c" +checksum = "e2422ad645d89c99f8f3e6b88a9fdeca7fabeac836b1002371c4367c8f984aae" dependencies = [ "unicode-ident", ] @@ -477,9 +454,9 @@ checksum = "60a357793950651c4ed0f3f52338f53b2f809f32d83a07f72909fa13e4c6c1e3" [[package]] name = "rayon" -version = "1.8.0" +version = "1.9.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "9c27db03db7734835b3f53954b534c91069375ce6ccaa2e065441e07d9b6cdb1" +checksum = "e4963ed1bc86e4f3ee217022bd855b297cef07fb9eac5dfa1f788b220b49b3bd" dependencies = [ "either", "rayon-core", @@ -487,32 +464,19 @@ dependencies = [ [[package]] name = "rayon-core" -version = "1.12.0" +version = "1.12.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5ce3fb6ad83f861aac485e76e1985cd109d9a3713802152be56c3b1f0e0658ed" +checksum = "1465873a3dfdaa8ae7cb14b4383657caab0b3e8a0aa9ae8e04b044854c8dfce2" dependencies = [ "crossbeam-deque", "crossbeam-utils", ] -[[package]] -name = "rustix" -version = "0.38.28" -source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "72e572a5e8ca657d7366229cdde4bd14c4eb5499a9573d4d366fe1b599daa316" -dependencies = [ - "bitflags", - "errno", - "libc", - "linux-raw-sys", - "windows-sys", -] - [[package]] name = "ryu" -version = "1.0.16" +version = "1.0.17" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "f98d2aa92eebf49b69786be48e4477826b256916e84a57ff2a4f21923b48eb4c" +checksum = "e86697c916019a8588c99b5fac3cead74ec0b4b819707a682fd4d23fa0ce1ba1" [[package]] name = "safe_arch" @@ -525,22 +489,22 @@ dependencies = [ [[package]] name = "serde" -version = "1.0.195" +version = "1.0.197" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "63261df402c67811e9ac6def069e4786148c4563f4b50fd4bf30aa370d626b02" +checksum = "3fb1c873e1b9b056a4dc4c0c198b24c3ffa059243875552b2bd0933b1aee4ce2" dependencies = [ "serde_derive", ] [[package]] name = "serde_derive" -version = "1.0.195" +version = "1.0.197" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "46fe8f8603d81ba86327b23a2e9cdf49e1255fb94a4c5f297f6ee0547178ea2c" +checksum = "7eb0b34b42edc17f6b7cac84a52a1c5f0e1bb2227e997ca9011ea3dd34e8610b" dependencies = [ "proc-macro2", "quote", - "syn 2.0.48", + "syn 2.0.52", ] [[package]] @@ -571,9 +535,9 @@ dependencies = [ [[package]] name = "strsim" -version = "0.10.0" +version = "0.11.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "73473c0e59e6d5812c5dfe2a064a6444949f089e20eec9a2e5506596494e4623" +checksum = "5ee073c9e4cd00e28217186dbe12796d692868f432bf2e97ee73bed0c56dfa01" [[package]] name = "supports-color" @@ -598,9 +562,9 @@ dependencies = [ [[package]] name = "syn" -version = "2.0.48" +version = "2.0.52" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "0f3531638e407dfc0814761abb7c00a5b54992b849452a0646b7f65c9f770f3f" +checksum = "b699d15b36d1f02c3e7c69f8ffef53de37aefae075d8488d4ba1a7788d574a07" dependencies = [ "proc-macro2", "quote", @@ -639,7 +603,7 @@ checksum = "9c8d87e72b64a3b4db28d11ce29237c246188f4f51057d65a7eab63b7987e423" [[package]] name = "webgestalt" -version = "0.2.0" +version = "0.2.1" dependencies = [ "bincode", "clap", @@ -649,7 +613,7 @@ dependencies = [ [[package]] name = "webgestalt_lib" -version = "0.2.0" +version = "0.2.1" dependencies = [ "ahash", "csv", @@ -662,9 +626,9 @@ dependencies = [ [[package]] name = "wide" -version = "0.7.13" +version = "0.7.15" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "c68938b57b33da363195412cfc5fc37c9ed49aa9cfe2156fde64b8d2c9498242" +checksum = "89beec544f246e679fc25490e3f8e08003bc4bf612068f325120dad4cea02c1c" dependencies = [ "bytemuck", "safe_arch", @@ -681,9 +645,9 @@ dependencies = [ [[package]] name = "windows-targets" -version = "0.52.0" +version = "0.52.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "8a18201040b24831fbb9e4eb208f8892e1f50a37feb53cc7ff887feb8f50e7cd" +checksum = "7dd37b7e5ab9018759f893a1952c9420d060016fc19a472b4bb20d1bdd694d1b" dependencies = [ "windows_aarch64_gnullvm", "windows_aarch64_msvc", @@ -696,45 +660,45 @@ dependencies = [ [[package]] name = "windows_aarch64_gnullvm" -version = "0.52.0" +version = "0.52.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "cb7764e35d4db8a7921e09562a0304bf2f93e0a51bfccee0bd0bb0b666b015ea" +checksum = "bcf46cf4c365c6f2d1cc93ce535f2c8b244591df96ceee75d8e83deb70a9cac9" [[package]] name = "windows_aarch64_msvc" -version = "0.52.0" +version = "0.52.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "bbaa0368d4f1d2aaefc55b6fcfee13f41544ddf36801e793edbbfd7d7df075ef" +checksum = "da9f259dd3bcf6990b55bffd094c4f7235817ba4ceebde8e6d11cd0c5633b675" [[package]] name = "windows_i686_gnu" -version = "0.52.0" +version = "0.52.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a28637cb1fa3560a16915793afb20081aba2c92ee8af57b4d5f28e4b3e7df313" +checksum = "b474d8268f99e0995f25b9f095bc7434632601028cf86590aea5c8a5cb7801d3" [[package]] name = "windows_i686_msvc" -version = "0.52.0" +version = "0.52.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ffe5e8e31046ce6230cc7215707b816e339ff4d4d67c65dffa206fd0f7aa7b9a" +checksum = "1515e9a29e5bed743cb4415a9ecf5dfca648ce85ee42e15873c3cd8610ff8e02" [[package]] name = "windows_x86_64_gnu" -version = "0.52.0" +version = "0.52.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "3d6fa32db2bc4a2f5abeacf2b69f7992cd09dca97498da74a151a3132c26befd" +checksum = "5eee091590e89cc02ad514ffe3ead9eb6b660aedca2183455434b93546371a03" [[package]] name = "windows_x86_64_gnullvm" -version = "0.52.0" +version = "0.52.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "1a657e1e9d3f514745a572a6846d3c7aa7dbe1658c056ed9c3344c4109a6949e" +checksum = "77ca79f2451b49fa9e2af39f0747fe999fcda4f5e241b2898624dca97a1f2177" [[package]] name = "windows_x86_64_msvc" -version = "0.52.0" +version = "0.52.4" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "dff9641d1cd4be8d1a070daf9e3773c5f67e78b4d9d42263020c057706765c04" +checksum = "32b752e52a2da0ddfbdbcc6fceadfeede4c939ed16d13e648833a61dfb611ed8" [[package]] name = "yansi" @@ -759,5 +723,5 @@ checksum = "9ce1b18ccd8e73a9321186f97e46f9f04b778851177567b1975109d26a08d2a6" dependencies = [ "proc-macro2", "quote", - "syn 2.0.48", + "syn 2.0.52", ] diff --git a/Cargo.toml b/Cargo.toml index bfaf32d..c9fedfa 100644 --- a/Cargo.toml +++ b/Cargo.toml @@ -2,7 +2,7 @@ [package] name = "webgestalt" -version = "0.2.0" +version = "0.2.1" authors = ["John Elizarraras"] edition = "2021" rust-version = "1.63.0" diff --git a/webgestalt_lib/Cargo.toml b/webgestalt_lib/Cargo.toml index a4de3e2..51570cd 100644 --- a/webgestalt_lib/Cargo.toml +++ b/webgestalt_lib/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "webgestalt_lib" -version = "0.2.0" +version = "0.2.1" authors = ["John Elizarraras"] edition = "2021" rust-version = "1.63.0" diff --git a/webgestalt_lib/README.md b/webgestalt_lib/README.md index cdbe716..ad64cc1 100644 --- a/webgestalt_lib/README.md +++ b/webgestalt_lib/README.md @@ -14,7 +14,7 @@ Supported methods include: To use webgestalt_lib in your Rust project, add the following line to your `Cargo.toml`. ```toml -webgestalt_lib = "0.1.1" # change to wanted version +webgestalt_lib = "0.2.0" # change to wanted version ``` If you are just interested in running an analysis, rather than develop new tools, please use one of the packages mentioned at the beginning of the README. diff --git a/webgestalt_lib/src/methods/gsea.rs b/webgestalt_lib/src/methods/gsea.rs index 6f3cdb3..d6fb977 100644 --- a/webgestalt_lib/src/methods/gsea.rs +++ b/webgestalt_lib/src/methods/gsea.rs @@ -3,6 +3,7 @@ use ahash::AHashSet; use rand::prelude::SliceRandom; use rand::SeedableRng; use rayon::prelude::*; +use serde::Serialize; /// Parameters for GSEA #[derive(Clone)] @@ -59,7 +60,7 @@ impl PartialGSEAResult { } } -#[derive(Clone)] +#[derive(Debug, Serialize, Clone)] pub struct GSEAResult { /// The set name pub set: String, diff --git a/webgestalt_lib/src/methods/ora.rs b/webgestalt_lib/src/methods/ora.rs index 2685b57..21a49e3 100644 --- a/webgestalt_lib/src/methods/ora.rs +++ b/webgestalt_lib/src/methods/ora.rs @@ -1,6 +1,7 @@ use crate::{readers::utils::Item, stat}; use ahash::AHashSet; use rayon::prelude::*; +use serde::Serialize; use statrs::distribution::{DiscreteCDF, Hypergeometric}; #[derive(Clone)] @@ -22,7 +23,7 @@ impl Default for ORAConfig { } } -#[derive(Debug)] +#[derive(Debug, Serialize, Clone)] pub struct ORAResult { pub set: String, pub p: f64, diff --git a/webgestalt_lib/tests/gsea_tests.rs b/webgestalt_lib/tests/gsea_tests.rs index c782259..4a49b8e 100644 --- a/webgestalt_lib/tests/gsea_tests.rs +++ b/webgestalt_lib/tests/gsea_tests.rs @@ -1,7 +1,5 @@ use pretty_assertions::assert_eq; use statrs::assert_almost_eq; -use webgestalt_lib; - const THRESHOLD: f64 = 0.0001; #[test]