diff --git a/tskit-pipeline/nextflow.config b/tskit-pipeline/nextflow.config
index 02ede5b..06b7498 100644
--- a/tskit-pipeline/nextflow.config
+++ b/tskit-pipeline/nextflow.config
@@ -96,21 +96,14 @@ profiles {
         cleanup                = false
         nextflow.enable.configProcessNamesValidation = true
     }
-    conda {
-        conda.enabled          = true
-        docker.enabled         = false
-        singularity.enabled    = false
-    }
     docker {
         docker.enabled         = true
-        conda.enabled          = false
         singularity.enabled    = false
         docker.runOptions      = '-u $(id -u):$(id -g)'
     }
     singularity {
         singularity.enabled    = true
         singularity.autoMounts = true
-        conda.enabled          = false
         docker.enabled         = false
     }
     test      { includeConfig 'conf/test.config'      }