Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

NEUR1630 Github Dependency #105

Merged
merged 7 commits into from
Nov 15, 2024
Merged

NEUR1630 Github Dependency #105

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
7 commits
Select commit Hold shift + click to select a range
8b7f0d8
add git requirement
anna-murphy Aug 27, 2024
acc9c14
fix typo
anna-murphy Aug 27, 2024
f438889
move dependency to requirements.pip.txt
anna-murphy Aug 27, 2024
4028a54
new pip packages
anna-murphy Sep 18, 2024
e6f9be5
remove lost fonts
anna-murphy Sep 26, 2024
ec18ade
comment out weir dep
anna-murphy Sep 26, 2024
fa43c7c
lock pyyaml version
anna-murphy Sep 27, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
10 changes: 0 additions & 10 deletions Dockerfile
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -53,16 +53,6 @@ RUN fix-permissions "${CONDA_DIR}" && \

USER root

# Install missing fonts
RUN cd /usr/share/fonts && \
wget http://mirrors.ctan.org/fonts/tex-gyre/opentype/texgyrepagella-bold.otf && \
wget http://mirrors.ctan.org/fonts/tex-gyre/opentype/texgyrepagella-bolditalic.otf && \
wget http://mirrors.ctan.org/fonts/tex-gyre/opentype/texgyrepagella-italic.otf && \
wget http://mirrors.ctan.org/fonts/tex-gyre/opentype/texgyrepagella-regular.otf && \
wget https://noto-website-2.storage.googleapis.com/pkgs/NotoSansMono-unhinted.zip && \
unzip NotoSansMono-unhinted.zip && \
chmod +r -R /usr/share/fonts

RUN fc-cache -fsv
RUN mktexlsr

Expand Down
7 changes: 7 additions & 0 deletions requirements/classes/neur1630/requirements.pip.txt
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -8,3 +8,10 @@ pynapple
pybiomart
pyranges
gseapy
gdown
rastermap
zenodo-get
cellxgene-census
ONE-api
git+https://github.com/alleninstitute/abc_atlas_access.git
PyYAML>=6.0.0
1 change: 0 additions & 1 deletion requirements/classes/neur1630/requirements.txt
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,5 +1,4 @@
# add class-specific packages here:

ipywidgets
zarr
requests
Expand Down
Loading