Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Chore/add neur1630 2024 #101

Merged
merged 4 commits into from
Aug 12, 2024
Merged

Chore/add neur1630 2024 #101

merged 4 commits into from
Aug 12, 2024

Conversation

anna-murphy
Copy link
Contributor

@anna-murphy anna-murphy commented Aug 5, 2024

Adds a jupyter hub image for NEUR 1630.

@digicosmos86 would love your eyes on this but I think it's good!

Requirements copied from 2023 class as per the ticket information
# (this can be changed by modifying the channel_alias key; see below).
# The default is just 'defaults'.
channels:
- conda-forge

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

@anna-murphy You might want to add the bioconda channel here. Neur1630 has quite a few biology-specific packages that are only available in these channels

sudo --preserve-env=CLASS docker compose up julia_build

- name: Configure Docker
run: gcloud auth configure-docker

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Suggested change
run: gcloud auth configure-docker
run: gcloud auth configure-docker ${{ env.REGION }}-docker.pkg.dev --quiet

@anna-murphy anna-murphy marked this pull request as ready for review August 12, 2024 16:09
Copy link

@digicosmos86 digicosmos86 left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

LGTM! Thank you so much, Anna!

@anna-murphy anna-murphy merged commit 2b338b4 into main Aug 12, 2024
1 check passed
@anna-murphy anna-murphy deleted the chore/add-neur1630-2024 branch August 12, 2024 18:34
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants