Merge pull request #105 from brown-ccv/neur1630/git-dependency

NEUR1630 Github Dependency
brown-ccv · Nov 15, 2024 · 0934ce5 · 0934ce5
2 parents 2b338b4 + fa43c7c
commit 0934ce5
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diff --git a/Dockerfile b/Dockerfile
@@ -53,16 +53,6 @@ RUN fix-permissions "${CONDA_DIR}" && \
 
 USER root
 
-# Install missing fonts
-RUN cd /usr/share/fonts && \
-    wget http://mirrors.ctan.org/fonts/tex-gyre/opentype/texgyrepagella-bold.otf && \
-    wget http://mirrors.ctan.org/fonts/tex-gyre/opentype/texgyrepagella-bolditalic.otf && \
-    wget http://mirrors.ctan.org/fonts/tex-gyre/opentype/texgyrepagella-italic.otf && \
-    wget http://mirrors.ctan.org/fonts/tex-gyre/opentype/texgyrepagella-regular.otf && \
-    wget https://noto-website-2.storage.googleapis.com/pkgs/NotoSansMono-unhinted.zip && \
-    unzip NotoSansMono-unhinted.zip && \
-    chmod +r -R /usr/share/fonts
-
 RUN fc-cache -fsv 
 RUN mktexlsr
 

diff --git a/requirements/classes/neur1630/requirements.pip.txt b/requirements/classes/neur1630/requirements.pip.txt
@@ -8,3 +8,10 @@ pynapple
 pybiomart
 pyranges
 gseapy
+gdown
+rastermap
+zenodo-get
+cellxgene-census
+ONE-api
+git+https://github.com/alleninstitute/abc_atlas_access.git
+PyYAML>=6.0.0
diff --git a/requirements/classes/neur1630/requirements.txt b/requirements/classes/neur1630/requirements.txt
@@ -1,5 +1,4 @@
 # add class-specific packages here:
-
 ipywidgets
 zarr
 requests