From a6e6e6dfb47e703154517541dc030991b626188d Mon Sep 17 00:00:00 2001 From: Louis Bergelson Date: Wed, 5 Apr 2023 16:46:48 -0400 Subject: [PATCH] Adding new style versions to special arguments --- .../argparser/SpecialArgumentsCollection.java | 17 +++++++++++++---- 1 file changed, 13 insertions(+), 4 deletions(-) diff --git a/src/main/java/org/broadinstitute/barclay/argparser/SpecialArgumentsCollection.java b/src/main/java/org/broadinstitute/barclay/argparser/SpecialArgumentsCollection.java index dfff5a73..610aedab 100644 --- a/src/main/java/org/broadinstitute/barclay/argparser/SpecialArgumentsCollection.java +++ b/src/main/java/org/broadinstitute/barclay/argparser/SpecialArgumentsCollection.java @@ -10,9 +10,18 @@ */ public final class SpecialArgumentsCollection { public static final String HELP_FULLNAME = "help"; - public static final String SHOW_HIDDEN_FULLNAME = "showHidden"; + + public static final String SHOW_HIDDEN_FULLNAME = "show-hidden"; + @Deprecated + public static final String SHOW_HIDDEN_DEPRECATED = "showHidden"; + public static final String VERSION_FULLNAME = "version"; - public static final String ARGUMENTS_FILE_FULLNAME = "arguments_file"; + + public static final String ARGUMENTS_FILE_FULLNAME = "arguments-file"; + @Deprecated + public static final String ARGUMENTS_FILE_DEPRECATED = "arguments_file"; + + private static final long serialVersionUID = 1L; @Argument(shortName = "h", fullName = HELP_FULLNAME, doc= "display the help message", special = true) @@ -21,10 +30,10 @@ public final class SpecialArgumentsCollection { @Argument(fullName = VERSION_FULLNAME, doc="display the version number for this tool", special = true) public boolean VERSION = false; - @Argument(fullName = ARGUMENTS_FILE_FULLNAME, doc="read one or more arguments files and add them to the command line", optional = true, special = true) + @Argument(fullName = ARGUMENTS_FILE_FULLNAME, shortName = ARGUMENTS_FILE_DEPRECATED, doc="read one or more arguments files and add them to the command line", optional = true, special = true) public List ARGUMENTS_FILE = new ArrayList<>(); @Advanced - @Argument(fullName = SHOW_HIDDEN_FULLNAME, shortName = SHOW_HIDDEN_FULLNAME, doc = "display hidden arguments", special = true) + @Argument(fullName = SHOW_HIDDEN_FULLNAME, shortName = SHOW_HIDDEN_DEPRECATED, doc = "display hidden arguments", special = true) public boolean SHOW_HIDDEN = false; }