diff --git a/CITATION.cff b/CITATION.cff
index cdd95bc91..1c035e2b9 100644
--- a/CITATION.cff
+++ b/CITATION.cff
@@ -2,8 +2,8 @@ cff-version: 1.2.0
title: BridgeDb
message: 'If you use this software, please cite it as below.'
type: software
-version: 3.1.2
-date-released: '2024-07-30'
+version: 3.1.3
+date-released: '2024-10-01'
authors:
- given-names: Manas
family-names: Awasthi
diff --git a/README.md b/README.md
index 555e3e9a8..83fbdba8e 100644
--- a/README.md
+++ b/README.md
@@ -15,7 +15,7 @@ Using BridgeDb dependencies
The [BridgeDb releases](https://github.com/bridgedb/BridgeDb/releases) are published to
[Maven Central](http://central.maven.org/maven2/org/bridgedb/), which means you can use the BridgeDb JARs without needing to compile BridgeDb.
-Usage depends on which module you require. The examples below assumes artifact `org.bridgedb.bio` and version `3.1.2`:
+Usage depends on which module you require. The examples below assumes artifact `org.bridgedb.bio` and version `3.1.3`:
For [Maven](https://maven.apache.org/):
@@ -24,7 +24,7 @@ For [Maven](https://maven.apache.org/):
org.bridgedb
org.bridgedb.bio
- 3.1.2
+ 3.1.3
```
@@ -32,19 +32,19 @@ For [Maven](https://maven.apache.org/):
For [Gradle](https://gradle.org/):
```gradle
-compile group: 'org.bridgedb', name: 'org.bridgedb.bio', version: '3.1.2'
+compile group: 'org.bridgedb', name: 'org.bridgedb.bio', version: '3.1.3'
```
For [Ivy](http://ant.apache.org/ivy/):
```xml
-
+
```
For [Buildr](https://buildr.apache.org/):
```buildr
-'org.bridgedb:org.bridgedb.bio:jar:3.1.2'
+'org.bridgedb:org.bridgedb.bio:jar:3.1.3'
```
@@ -135,7 +135,7 @@ To make the release, run the following commands. Mind you, this requires you
to have an approved Sonatype (http://oss.sonatype.org/) account with push rights:
```shell
-mvn versions:set -DnewVersion=3.1.2
+mvn versions:set -DnewVersion=3.1.3
mvn clean deploy
```
@@ -145,7 +145,7 @@ and everything.
To make a development (SNAPSHOT) release, use:
```shell
-mvn versions:set -DnewVersion=3.1.3-SNAPSHOT
+mvn versions:set -DnewVersion=3.1.4-SNAPSHOT
mvn clean deploy
```
diff --git a/examples/pom.xml b/examples/pom.xml
index 3fe355949..046535746 100644
--- a/examples/pom.xml
+++ b/examples/pom.xml
@@ -3,7 +3,7 @@
bridgedb-bundle
org.bridgedb
- 3.1.3-SNAPSHOT
+ 3.1.3
4.0.0
org.bridgedb.examples
diff --git a/org.bridgedb.bio/pom.xml b/org.bridgedb.bio/pom.xml
index cbcc44086..32af86677 100644
--- a/org.bridgedb.bio/pom.xml
+++ b/org.bridgedb.bio/pom.xml
@@ -8,7 +8,7 @@
bridgedb-bundle
org.bridgedb
- 3.1.3-SNAPSHOT
+ 3.1.3
diff --git a/org.bridgedb.file.orthoxml/pom.xml b/org.bridgedb.file.orthoxml/pom.xml
index 88b5d884f..609362c96 100644
--- a/org.bridgedb.file.orthoxml/pom.xml
+++ b/org.bridgedb.file.orthoxml/pom.xml
@@ -6,7 +6,7 @@
bridgedb-bundle
org.bridgedb
- 3.1.3-SNAPSHOT
+ 3.1.3
diff --git a/org.bridgedb.gui/pom.xml b/org.bridgedb.gui/pom.xml
index 22a091701..e4e9c498a 100644
--- a/org.bridgedb.gui/pom.xml
+++ b/org.bridgedb.gui/pom.xml
@@ -7,7 +7,7 @@
bridgedb-bundle
org.bridgedb
- 3.1.3-SNAPSHOT
+ 3.1.3
diff --git a/org.bridgedb.rdb.construct/pom.xml b/org.bridgedb.rdb.construct/pom.xml
index 2fdee3665..1ee0d0da8 100644
--- a/org.bridgedb.rdb.construct/pom.xml
+++ b/org.bridgedb.rdb.construct/pom.xml
@@ -7,7 +7,7 @@
bridgedb-bundle
org.bridgedb
- 3.1.3-SNAPSHOT
+ 3.1.3
diff --git a/org.bridgedb.rdb/pom.xml b/org.bridgedb.rdb/pom.xml
index 75ea6d092..169b5be78 100644
--- a/org.bridgedb.rdb/pom.xml
+++ b/org.bridgedb.rdb/pom.xml
@@ -7,7 +7,7 @@
bridgedb-bundle
org.bridgedb
- 3.1.3-SNAPSHOT
+ 3.1.3
diff --git a/org.bridgedb.rdf/pom.xml b/org.bridgedb.rdf/pom.xml
index 14e4863d9..d7a497f28 100644
--- a/org.bridgedb.rdf/pom.xml
+++ b/org.bridgedb.rdf/pom.xml
@@ -6,7 +6,7 @@
bridgedb-bundle
org.bridgedb
- 3.1.3-SNAPSHOT
+ 3.1.3
diff --git a/org.bridgedb.sql/pom.xml b/org.bridgedb.sql/pom.xml
index e33449052..22fec0bd2 100644
--- a/org.bridgedb.sql/pom.xml
+++ b/org.bridgedb.sql/pom.xml
@@ -7,7 +7,7 @@
bridgedb-bundle
org.bridgedb
- 3.1.3-SNAPSHOT
+ 3.1.3
diff --git a/org.bridgedb.tools.batchmapper/pom.xml b/org.bridgedb.tools.batchmapper/pom.xml
index 4a489cede..be079f4b8 100644
--- a/org.bridgedb.tools.batchmapper/pom.xml
+++ b/org.bridgedb.tools.batchmapper/pom.xml
@@ -6,7 +6,7 @@
bridgedb-bundle
org.bridgedb
- 3.1.3-SNAPSHOT
+ 3.1.3
@@ -33,19 +33,19 @@
org.bridgedb
org.bridgedb
- 3.1.3-SNAPSHOT
+ 3.1.3
compile
org.bridgedb
org.bridgedb.bio
- 3.1.3-SNAPSHOT
+ 3.1.3
compile
org.bridgedb
org.bridgedb.rdb
- 3.1.3-SNAPSHOT
+ 3.1.3
compile
diff --git a/org.bridgedb.tools.info/pom.xml b/org.bridgedb.tools.info/pom.xml
index b5ecac8a0..26c9f2308 100644
--- a/org.bridgedb.tools.info/pom.xml
+++ b/org.bridgedb.tools.info/pom.xml
@@ -7,7 +7,7 @@
bridgedb-bundle
org.bridgedb
- 3.1.3-SNAPSHOT
+ 3.1.3
diff --git a/org.bridgedb.tools.qc/pom.xml b/org.bridgedb.tools.qc/pom.xml
index 04e125150..3fafb090e 100644
--- a/org.bridgedb.tools.qc/pom.xml
+++ b/org.bridgedb.tools.qc/pom.xml
@@ -7,7 +7,7 @@
bridgedb-bundle
org.bridgedb
- 3.1.3-SNAPSHOT
+ 3.1.3
diff --git a/org.bridgedb.tools.voidtool/pom.xml b/org.bridgedb.tools.voidtool/pom.xml
index e592e3388..a7e5b5a3b 100644
--- a/org.bridgedb.tools.voidtool/pom.xml
+++ b/org.bridgedb.tools.voidtool/pom.xml
@@ -7,7 +7,7 @@
bridgedb-bundle
org.bridgedb
- 3.1.3-SNAPSHOT
+ 3.1.3
diff --git a/org.bridgedb.uri.api/pom.xml b/org.bridgedb.uri.api/pom.xml
index 8b74b4eea..f8d17ca80 100644
--- a/org.bridgedb.uri.api/pom.xml
+++ b/org.bridgedb.uri.api/pom.xml
@@ -7,7 +7,7 @@
bridgedb-bundle
org.bridgedb
- 3.1.3-SNAPSHOT
+ 3.1.3
diff --git a/org.bridgedb.uri.loader/pom.xml b/org.bridgedb.uri.loader/pom.xml
index 4fc3d983e..3fe0993f3 100644
--- a/org.bridgedb.uri.loader/pom.xml
+++ b/org.bridgedb.uri.loader/pom.xml
@@ -6,7 +6,7 @@
bridgedb-bundle
org.bridgedb
- 3.1.3-SNAPSHOT
+ 3.1.3
diff --git a/org.bridgedb.uri.sql/pom.xml b/org.bridgedb.uri.sql/pom.xml
index 00a76920c..523efff03 100644
--- a/org.bridgedb.uri.sql/pom.xml
+++ b/org.bridgedb.uri.sql/pom.xml
@@ -7,7 +7,7 @@
bridgedb-bundle
org.bridgedb
- 3.1.3-SNAPSHOT
+ 3.1.3
diff --git a/org.bridgedb.uri.ws.client/pom.xml b/org.bridgedb.uri.ws.client/pom.xml
index 2beeba819..5f0f5b744 100644
--- a/org.bridgedb.uri.ws.client/pom.xml
+++ b/org.bridgedb.uri.ws.client/pom.xml
@@ -8,7 +8,7 @@
bridgedb-bundle
org.bridgedb
- 3.1.3-SNAPSHOT
+ 3.1.3
diff --git a/org.bridgedb.uri.ws.core/pom.xml b/org.bridgedb.uri.ws.core/pom.xml
index a1349048c..2027b7914 100644
--- a/org.bridgedb.uri.ws.core/pom.xml
+++ b/org.bridgedb.uri.ws.core/pom.xml
@@ -8,7 +8,7 @@
bridgedb-bundle
org.bridgedb
- 3.1.3-SNAPSHOT
+ 3.1.3
diff --git a/org.bridgedb.uri.ws.server/pom.xml b/org.bridgedb.uri.ws.server/pom.xml
index f3672d4e3..f6ae18627 100644
--- a/org.bridgedb.uri.ws.server/pom.xml
+++ b/org.bridgedb.uri.ws.server/pom.xml
@@ -8,7 +8,7 @@
bridgedb-bundle
org.bridgedb
- 3.1.3-SNAPSHOT
+ 3.1.3
diff --git a/org.bridgedb.utils/pom.xml b/org.bridgedb.utils/pom.xml
index f8ac233e2..468fcf5cb 100644
--- a/org.bridgedb.utils/pom.xml
+++ b/org.bridgedb.utils/pom.xml
@@ -7,7 +7,7 @@
bridgedb-bundle
org.bridgedb
- 3.1.3-SNAPSHOT
+ 3.1.3
diff --git a/org.bridgedb.webservice.biomart/pom.xml b/org.bridgedb.webservice.biomart/pom.xml
index c5ac195d8..0ad3609ea 100644
--- a/org.bridgedb.webservice.biomart/pom.xml
+++ b/org.bridgedb.webservice.biomart/pom.xml
@@ -8,7 +8,7 @@
bridgedb-bundle
org.bridgedb
- 3.1.3-SNAPSHOT
+ 3.1.3
diff --git a/org.bridgedb.webservice.bridgerest/pom.xml b/org.bridgedb.webservice.bridgerest/pom.xml
index 6726e0633..820d4039a 100644
--- a/org.bridgedb.webservice.bridgerest/pom.xml
+++ b/org.bridgedb.webservice.bridgerest/pom.xml
@@ -8,7 +8,7 @@
bridgedb-bundle
org.bridgedb
- 3.1.3-SNAPSHOT
+ 3.1.3
diff --git a/org.bridgedb.ws.client/pom.xml b/org.bridgedb.ws.client/pom.xml
index ea57e2096..05d56cc59 100644
--- a/org.bridgedb.ws.client/pom.xml
+++ b/org.bridgedb.ws.client/pom.xml
@@ -8,7 +8,7 @@
bridgedb-bundle
org.bridgedb
- 3.1.3-SNAPSHOT
+ 3.1.3
diff --git a/org.bridgedb.ws.core/pom.xml b/org.bridgedb.ws.core/pom.xml
index d39248962..6494251c5 100644
--- a/org.bridgedb.ws.core/pom.xml
+++ b/org.bridgedb.ws.core/pom.xml
@@ -8,7 +8,7 @@
bridgedb-bundle
org.bridgedb
- 3.1.3-SNAPSHOT
+ 3.1.3
diff --git a/org.bridgedb.ws.server/pom.xml b/org.bridgedb.ws.server/pom.xml
index ebbe3b200..378d6371a 100644
--- a/org.bridgedb.ws.server/pom.xml
+++ b/org.bridgedb.ws.server/pom.xml
@@ -8,7 +8,7 @@
bridgedb-bundle
org.bridgedb
- 3.1.3-SNAPSHOT
+ 3.1.3
diff --git a/org.bridgedb/pom.xml b/org.bridgedb/pom.xml
index 7b96e71fb..29cd03789 100644
--- a/org.bridgedb/pom.xml
+++ b/org.bridgedb/pom.xml
@@ -33,7 +33,7 @@
bridgedb-bundle
org.bridgedb
- 3.1.3-SNAPSHOT
+ 3.1.3
diff --git a/org.bridgedb/src/main/resources/version.props b/org.bridgedb/src/main/resources/version.props
index 6cc9da92d..0da9c3ac6 100644
--- a/org.bridgedb/src/main/resources/version.props
+++ b/org.bridgedb/src/main/resources/version.props
@@ -1,2 +1,2 @@
# Current version of BridgeDb
-bridgedb.version=3.1.2
+bridgedb.version=3.1.3
diff --git a/pom-java8.xml b/pom-java8.xml
index 4b568673d..e994adb9a 100644
--- a/pom-java8.xml
+++ b/pom-java8.xml
@@ -4,7 +4,7 @@
org.bridgedb
bridgedb-bundle-pv
pom
- 3.1.2
+ 3.1.3-java8
BridgeDb 4 PathVisio bundle
BridgeDb is a framework for finding and mapping equivalent database
diff --git a/pom.xml b/pom.xml
index 502cb7f58..d95abc4a0 100644
--- a/pom.xml
+++ b/pom.xml
@@ -4,7 +4,7 @@
org.bridgedb
bridgedb-bundle
pom
- 3.1.3-SNAPSHOT
+ 3.1.3
BridgeDb bundle
BridgeDb is a framework for finding and mapping equivalent database