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tox.ini
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tox.ini
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# Tox (http://tox.testrun.org/) is a tool for running tests
# in multiple virtualenvs. This configuration file will run the
# test suite on all supported python versions. To use it, "pip install tox"
# and then run "tox" from this directory.
[tox]
# To use a PEP 517 build-backend you are required to configure tox to use an isolated_build:
# https://tox.readthedocs.io/en/latest/example/package.html
isolated_build = True
skipsdist = True
envlist =
# always keep coverage-clean first
coverage-clean
lint
flake8
mypy
docstr-coverage
py
[testenv]
whitelist_externals =
poetry
commands =
poetry run pytest
description = Run unit tests with pytest. This is a special environment that does not get a name, and
can be referenced with "py".
[testenv:coverage-clean]
deps = coverage
skip_install = true
commands = coverage erase
[testenv:lint]
deps =
black
isort
skip_install = true
commands =
black src/ tests/
isort src/ tests/
description = Run linters.
[testenv:doclint]
deps =
rstfmt
skip_install = true
commands =
rstfmt docs/source/
description = Run documentation linters.
[testenv:flake8]
skip_install = true
deps =
darglint
flake8<5.0.0
flake8-black
flake8-bandit
flake8-bugbear
flake8-colors
flake8-docstrings
flake8-isort
flake8-print
pydocstyle
commands =
flake8 src/ tests/
description = Run the flake8 tool with several plugins (bandit, docstrings, import order, pep8 naming).
#########################
# Flake8 Configuration #
# (.flake8) #
#########################
[flake8]
exclude =
templates
max-line-length = 100
ignore =
DAR101 # Missing parameter(s) in Docstring: - with_git_hash
DAR201 # Missing "Returns" in Docstring: - return
DAR301 # Missing "Yields" in Docstring: - yield
DAR401 # Missing exception(s) in Raises section: -r ValueError
E111 # indentation is not a multiple of 4
E203 # whitespace before ':'
T201 # print found.
W503 # line break before binary operator
D412 # No blank lines allowed between a section header and its content
S301 # Pickle and modules that wrap it can be unsafe when used to deserialize
# untrusted data, possible security issue.
S403 # Consider possible security implications associated with pickle module.
#* NEEDS FIXING ASAP ************
B001 # Do not use bare `except:`
B008 # Do not perform function calls in argument defaults.
D101
D102
D103
D104
D105
D202 # No blank lines allowed after function docstring
E722 # do not use bare 'except'
F841
F821
S101 # Use of assert detected. The enclosed code will be removed when compiling to optimised byte code.
S113 # Requests call without timeout
S110 # Try, Except, Pass detected.
S311
[testenv:mypy]
deps = mypy
skip_install = true
commands = mypy --install-types --non-interactive --ignore-missing-imports --no-strict-optional --exclude 'src/ontogpt/templates/*' --follow-imports skip --no-warn-no-return src/
description = Run the mypy tool to check static typing on the project.
[testenv:docstr-coverage]
skip_install = true
deps =
docstr-coverage
commands =
docstr-coverage src/ tests/ --skip-private --skip-magic
description = Run the docstr-coverage tool to check documentation coverage