Merge pull request #97 from bridge2ai/add-orgs

Add Bridge2AI cores and DGPs to Organizations
bridge2ai · Jul 13, 2023 · fa90721 · fa90721
2 parents 67c0357 + 6821d22
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diff --git a/project/data/Organization.json b/project/data/Organization.json
@@ -1213,6 +1213,159 @@
       "ror_id": "ror:029z3g861",
       "wikidata_id": "wikidata:Q5382468",
       "url": "https://www.epic.com/"
+    },
+    {
+      "id": "B2AI_ORG:106",
+      "category": "Organization",
+      "name": "Bridge2AI",
+      "description": "Bridge to Artificial Intelligence Consortium",
+      "contributor_name": "Harry Caufield",
+      "contributor_github_name": "caufieldjh",
+      "contributor_orcid": "ORCID:0000-0001-5705-7831",
+      "url": "https://bridge2ai.org/"
+    },
+    {
+      "id": "B2AI_ORG:107",
+      "category": "Organization",
+      "name": "Bridge2AI Bridge Center",
+      "description": "Bridge to Artificial Intelligence Consortium Bridge Center",
+      "subclass_of": [
+        "B2AI_ORG:106"
+      ],
+      "contributor_name": "Harry Caufield",
+      "contributor_github_name": "caufieldjh",
+      "contributor_orcid": "ORCID:0000-0001-5705-7831",
+      "url": "https://bridge2ai.org/bridge2ai-cores/"
+    },
+    {
+      "id": "B2AI_ORG:108",
+      "category": "Organization",
+      "name": "Bridge2AI Administrative Core",
+      "description": "Bridge to Artificial Intelligence Consortium Administrative Core",
+      "subclass_of": [
+        "B2AI_ORG:107"
+      ],
+      "contributor_name": "Harry Caufield",
+      "contributor_github_name": "caufieldjh",
+      "contributor_orcid": "ORCID:0000-0001-5705-7831",
+      "url": "https://bridge2ai.org/administrative-core/"
+    },
+    {
+      "id": "B2AI_ORG:109",
+      "category": "Organization",
+      "name": "Bridge2AI Ethics Core",
+      "description": "Bridge to Artificial Intelligence Consortium Ethics Core",
+      "subclass_of": [
+        "B2AI_ORG:107"
+      ],
+      "contributor_name": "Harry Caufield",
+      "contributor_github_name": "caufieldjh",
+      "contributor_orcid": "ORCID:0000-0001-5705-7831",
+      "url": "https://bridge2ai.org/ethics-core/"
+    },
+    {
+      "id": "B2AI_ORG:110",
+      "category": "Organization",
+      "name": "Bridge2AI Standards Core",
+      "description": "Bridge to Artificial Intelligence Consortium Standards Core",
+      "subclass_of": [
+        "B2AI_ORG:107"
+      ],
+      "contributor_name": "Harry Caufield",
+      "contributor_github_name": "caufieldjh",
+      "contributor_orcid": "ORCID:0000-0001-5705-7831",
+      "url": "https://bridge2ai.org/standards-core/"
+    },
+    {
+      "id": "B2AI_ORG:111",
+      "category": "Organization",
+      "name": "Bridge2AI SWD Core",
+      "description": "Bridge to Artificial Intelligence Consortium Skills and Workforce Development Core",
+      "subclass_of": [
+        "B2AI_ORG:107"
+      ],
+      "contributor_name": "Harry Caufield",
+      "contributor_github_name": "caufieldjh",
+      "contributor_orcid": "ORCID:0000-0001-5705-7831",
+      "url": "https://bridge2ai.org/skills-and-workforce-development-core/"
+    },
+    {
+      "id": "B2AI_ORG:112",
+      "category": "Organization",
+      "name": "Bridge2AI Teaming Core",
+      "description": "Bridge to Artificial Intelligence Consortium Teaming Core",
+      "subclass_of": [
+        "B2AI_ORG:107"
+      ],
+      "contributor_name": "Harry Caufield",
+      "contributor_github_name": "caufieldjh",
+      "contributor_orcid": "ORCID:0000-0001-5705-7831",
+      "url": "https://bridge2ai.org/teaming-core/"
+    },
+    {
+      "id": "B2AI_ORG:113",
+      "category": "Organization",
+      "name": "Bridge2AI Tools Core",
+      "description": "Bridge to Artificial Intelligence Consortium Tools Optimization Core",
+      "subclass_of": [
+        "B2AI_ORG:107"
+      ],
+      "contributor_name": "Harry Caufield",
+      "contributor_github_name": "caufieldjh",
+      "contributor_orcid": "ORCID:0000-0001-5705-7831",
+      "url": "https://bridge2ai.org/tools-optimization-core/"
+    },
+    {
+      "id": "B2AI_ORG:114",
+      "category": "Organization",
+      "name": "AI-READi DGP",
+      "description": "Artificial Intelligence Ready and Equitable Atlas for Diabetes Insights project",
+      "subclass_of": [
+        "B2AI_ORG:106"
+      ],
+      "contributor_name": "Harry Caufield",
+      "contributor_github_name": "caufieldjh",
+      "contributor_orcid": "ORCID:0000-0001-5705-7831",
+      "url": "https://aireadi.org/"
+    },
+    {
+      "id": "B2AI_ORG:115",
+      "category": "Organization",
+      "name": "CHoRUS DGP",
+      "description": "Patient-Focused Collaborative Hospital Repository Uniting Standards project",
+      "subclass_of": [
+        "B2AI_ORG:106"
+      ],
+      "contributor_name": "Harry Caufield",
+      "contributor_github_name": "caufieldjh",
+      "contributor_orcid": "ORCID:0000-0001-5705-7831",
+      "url": "https://www.chorus4ai.org/"
+    },
+    {
+      "id": "B2AI_ORG:116",
+      "category": "Organization",
+      "name": "CM4AI DGP",
+      "description": "Cell Maps for AI project",
+      "subclass_of": [
+        "B2AI_ORG:106"
+      ],
+      "contributor_name": "Harry Caufield",
+      "contributor_github_name": "caufieldjh",
+      "contributor_orcid": "ORCID:0000-0001-5705-7831",
+      "url": "https://cm4ai.org/"
+    },
+    {
+      "id": "B2AI_ORG:117",
+      "category": "Organization",
+      "name": "Voice DGP",
+      "description": "Voice as a Biomarker of Health project",
+      "subclass_of": [
+        "B2AI_ORG:106"
+      ],
+      "contributor_name": "Harry Caufield",
+      "contributor_github_name": "caufieldjh",
+      "contributor_orcid": "ORCID:0000-0001-5705-7831",
+      "url": "https://bridge2ai.org/voice/"
     }
   ],
   "@type": "OrganizationContainer"

diff --git a/project/data/Organization.tsv b/project/data/Organization.tsv
@@ -104,3 +104,15 @@ id	category	name	description	contributor_name	contributor_github_name	contributo
 [B2AI_ORG:103](Organization.markdown)	Organization	ISA	Interoperability Standards Advisory	Harry Caufield	caufieldjh	ORCID:0000-0001-5705-7831			<a href="https://www.healthit.gov/isa/">https://www.healthit.gov/isa/</a>	[[B2AI_ORG:102]](Organization.markdown)
 [B2AI_ORG:104](Organization.markdown)	Organization	IBM	The International Business Machines Corporation	Harry Caufield	caufieldjh	ORCID:0000-0001-5705-7831	ror:05hh8d621	wikidata:Q37156	<a href="https://www.ibm.com/">https://www.ibm.com/</a>	
 [B2AI_ORG:105](Organization.markdown)	Organization	Epic	Epic Systems Corporation	Harry Caufield	caufieldjh	ORCID:0000-0001-5705-7831	ror:029z3g861	wikidata:Q5382468	<a href="https://www.epic.com/">https://www.epic.com/</a>	
+[B2AI_ORG:106](Organization.markdown)	Organization	Bridge2AI	Bridge to Artificial Intelligence Consortium	Harry Caufield	caufieldjh	ORCID:0000-0001-5705-7831			<a href="https://bridge2ai.org/">https://bridge2ai.org/</a>	
+[B2AI_ORG:107](Organization.markdown)	Organization	Bridge2AI Bridge Center	Bridge to Artificial Intelligence Consortium Bridge Center	Harry Caufield	caufieldjh	ORCID:0000-0001-5705-7831			<a href="https://bridge2ai.org/bridge2ai-cores/">https://bridge2ai.org/bridge2ai-cores/</a>	[[B2AI_ORG:106]](Organization.markdown)
+[B2AI_ORG:108](Organization.markdown)	Organization	Bridge2AI Administrative Core	Bridge to Artificial Intelligence Consortium Administrative Core	Harry Caufield	caufieldjh	ORCID:0000-0001-5705-7831			<a href="https://bridge2ai.org/administrative-core/">https://bridge2ai.org/administrative-core/</a>	[[B2AI_ORG:107]](Organization.markdown)
+[B2AI_ORG:109](Organization.markdown)	Organization	Bridge2AI Ethics Core	Bridge to Artificial Intelligence Consortium Ethics Core	Harry Caufield	caufieldjh	ORCID:0000-0001-5705-7831			<a href="https://bridge2ai.org/ethics-core/">https://bridge2ai.org/ethics-core/</a>	[[B2AI_ORG:107]](Organization.markdown)
+[B2AI_ORG:110](Organization.markdown)	Organization	Bridge2AI Standards Core	Bridge to Artificial Intelligence Consortium Standards Core	Harry Caufield	caufieldjh	ORCID:0000-0001-5705-7831			<a href="https://bridge2ai.org/standards-core/">https://bridge2ai.org/standards-core/</a>	[[B2AI_ORG:107]](Organization.markdown)
+[B2AI_ORG:111](Organization.markdown)	Organization	Bridge2AI SWD Core	Bridge to Artificial Intelligence Consortium Skills and Workforce Development Core	Harry Caufield	caufieldjh	ORCID:0000-0001-5705-7831			<a href="https://bridge2ai.org/skills-and-workforce-development-core/">https://bridge2ai.org/skills-and-workforce-development-core/</a>	[[B2AI_ORG:107]](Organization.markdown)
+[B2AI_ORG:112](Organization.markdown)	Organization	Bridge2AI Teaming Core	Bridge to Artificial Intelligence Consortium Teaming Core	Harry Caufield	caufieldjh	ORCID:0000-0001-5705-7831			<a href="https://bridge2ai.org/teaming-core/">https://bridge2ai.org/teaming-core/</a>	[[B2AI_ORG:107]](Organization.markdown)
+[B2AI_ORG:113](Organization.markdown)	Organization	Bridge2AI Tools Core	Bridge to Artificial Intelligence Consortium Tools Optimization Core	Harry Caufield	caufieldjh	ORCID:0000-0001-5705-7831			<a href="https://bridge2ai.org/tools-optimization-core/">https://bridge2ai.org/tools-optimization-core/</a>	[[B2AI_ORG:107]](Organization.markdown)
+[B2AI_ORG:114](Organization.markdown)	Organization	AI-READi DGP	Artificial Intelligence Ready and Equitable Atlas for Diabetes Insights project	Harry Caufield	caufieldjh	ORCID:0000-0001-5705-7831			<a href="https://aireadi.org/">https://aireadi.org/</a>	[[B2AI_ORG:106]](Organization.markdown)
+[B2AI_ORG:115](Organization.markdown)	Organization	CHoRUS DGP	Patient-Focused Collaborative Hospital Repository Uniting Standards project	Harry Caufield	caufieldjh	ORCID:0000-0001-5705-7831			<a href="https://www.chorus4ai.org/">https://www.chorus4ai.org/</a>	[[B2AI_ORG:106]](Organization.markdown)
+[B2AI_ORG:116](Organization.markdown)	Organization	CM4AI DGP	Cell Maps for AI project	Harry Caufield	caufieldjh	ORCID:0000-0001-5705-7831			<a href="https://cm4ai.org/">https://cm4ai.org/</a>	[[B2AI_ORG:106]](Organization.markdown)
+[B2AI_ORG:117](Organization.markdown)	Organization	Voice DGP	Voice as a Biomarker of Health project	Harry Caufield	caufieldjh	ORCID:0000-0001-5705-7831			<a href="https://bridge2ai.org/voice/">https://bridge2ai.org/voice/</a>	[[B2AI_ORG:106]](Organization.markdown)
diff --git a/src/data/Organization.yaml b/src/data/Organization.yaml
@@ -1198,6 +1198,148 @@ organizations:
     wikidata_id: wikidata:Q5382468
     url: https://www.epic.com/
 
+    contributor_name: Harry Caufield
+    contributor_github_name: caufieldjh
+    contributor_orcid: "ORCID:0000-0001-5705-7831"
+
+  - id: B2AI_ORG:106
+    name: Bridge2AI
+    category: Organization
+    description: Bridge to Artificial Intelligence Consortium
+    url: https://bridge2ai.org/
+
+    contributor_name: Harry Caufield
+    contributor_github_name: caufieldjh
+    contributor_orcid: "ORCID:0000-0001-5705-7831"
+
+  - id: B2AI_ORG:107
+    name: Bridge2AI Bridge Center
+    subclass_of:
+    - B2AI_ORG:106
+    category: Organization
+    description: Bridge to Artificial Intelligence Consortium Bridge Center
+    url: https://bridge2ai.org/bridge2ai-cores/
+
+    contributor_name: Harry Caufield
+    contributor_github_name: caufieldjh
+    contributor_orcid: "ORCID:0000-0001-5705-7831"
+
+  - id: B2AI_ORG:108
+    name: Bridge2AI Administrative Core
+    subclass_of:
+    - B2AI_ORG:107
+    category: Organization
+    description: Bridge to Artificial Intelligence Consortium Administrative Core
+    url: https://bridge2ai.org/administrative-core/
+
+    contributor_name: Harry Caufield
+    contributor_github_name: caufieldjh
+    contributor_orcid: "ORCID:0000-0001-5705-7831"
+
+  - id: B2AI_ORG:109
+    name: Bridge2AI Ethics Core
+    subclass_of:
+    - B2AI_ORG:107
+    category: Organization
+    description: Bridge to Artificial Intelligence Consortium Ethics Core
+    url: https://bridge2ai.org/ethics-core/
+
+    contributor_name: Harry Caufield
+    contributor_github_name: caufieldjh
+    contributor_orcid: "ORCID:0000-0001-5705-7831"
+
+  - id: B2AI_ORG:110
+    name: Bridge2AI Standards Core
+    subclass_of:
+    - B2AI_ORG:107
+    category: Organization
+    description: Bridge to Artificial Intelligence Consortium Standards Core
+    url: https://bridge2ai.org/standards-core/
+
+    contributor_name: Harry Caufield
+    contributor_github_name: caufieldjh
+    contributor_orcid: "ORCID:0000-0001-5705-7831"
+
+  - id: B2AI_ORG:111
+    name: Bridge2AI SWD Core
+    subclass_of:
+    - B2AI_ORG:107
+    category: Organization
+    description: Bridge to Artificial Intelligence Consortium Skills and Workforce Development Core
+    url: https://bridge2ai.org/skills-and-workforce-development-core/
+
+    contributor_name: Harry Caufield
+    contributor_github_name: caufieldjh
+    contributor_orcid: "ORCID:0000-0001-5705-7831"
+
+  - id: B2AI_ORG:112
+    name: Bridge2AI Teaming Core
+    subclass_of:
+    - B2AI_ORG:107
+    category: Organization
+    description: Bridge to Artificial Intelligence Consortium Teaming Core
+    url: https://bridge2ai.org/teaming-core/
+
+    contributor_name: Harry Caufield
+    contributor_github_name: caufieldjh
+    contributor_orcid: "ORCID:0000-0001-5705-7831"
+
+  - id: B2AI_ORG:113
+    name: Bridge2AI Tools Core
+    subclass_of:
+    - B2AI_ORG:107
+    category: Organization
+    description: Bridge to Artificial Intelligence Consortium Tools Optimization Core
+    url: https://bridge2ai.org/tools-optimization-core/
+
+    contributor_name: Harry Caufield
+    contributor_github_name: caufieldjh
+    contributor_orcid: "ORCID:0000-0001-5705-7831"
+
+  - id: B2AI_ORG:114
+    name: AI-READi DGP
+    subclass_of:
+    - B2AI_ORG:106
+    category: Organization
+    description: Artificial Intelligence Ready and Equitable Atlas for Diabetes Insights project
+    url: https://aireadi.org/
+
+    contributor_name: Harry Caufield
+    contributor_github_name: caufieldjh
+    contributor_orcid: "ORCID:0000-0001-5705-7831"
+
+  - id: B2AI_ORG:115
+    name: CHoRUS DGP
+    subclass_of:
+    - B2AI_ORG:106
+    category: Organization
+    description: Patient-Focused Collaborative Hospital Repository Uniting Standards project
+    url: https://www.chorus4ai.org/
+
+    contributor_name: Harry Caufield
+    contributor_github_name: caufieldjh
+    contributor_orcid: "ORCID:0000-0001-5705-7831"
+
+  - id: B2AI_ORG:116
+    name: CM4AI DGP
+    subclass_of:
+    - B2AI_ORG:106
+    category: Organization
+    description: Cell Maps for AI project
+    url: https://cm4ai.org/
+
+    contributor_name: Harry Caufield
+    contributor_github_name: caufieldjh
+    contributor_orcid: "ORCID:0000-0001-5705-7831"
+
+  - id: B2AI_ORG:117
+    name: Voice DGP
+    subclass_of:
+    - B2AI_ORG:106
+    category: Organization
+    description: Voice as a Biomarker of Health project
+    url: https://bridge2ai.org/voice/
+
     contributor_name: Harry Caufield
     contributor_github_name: caufieldjh
     contributor_orcid: "ORCID:0000-0001-5705-7831"
diff --git a/src/schema/standards_datatopic_schema.yaml b/src/schema/standards_datatopic_schema.yaml
@@ -8,17 +8,19 @@ see_also:
   - https://bridge2ai.github.io/standards-datatopic-schema
 
 prefixes:
+  B2AI_TOPIC: https://w3id.org/bridge2ai/standards-datatopic-schema/
+  MeSH: http://id.nlm.nih.gov/mesh/
+  NCIT: http://purl.obolibrary.org/obo/NCIT_
+  PATO: http://purl.obolibrary.org/obo/PATO_
+  RO: http://purl.obolibrary.org/obo/RO_
+  biolink: https://w3id.org/biolink/vocab/
   edam.data: http://edamontology.org/data_
   edam.format: http://edamontology.org/format_
   edam.operation: http://edamontology.org/operation_
   edam.topic: http://edamontology.org/topic_
-  MeSH: http://id.nlm.nih.gov/mesh/
-  NCIT: http://purl.obolibrary.org/obo/NCIT_
-  B2AI_TOPIC: https://w3id.org/bridge2ai/standards-datatopic-schema/
   linkml: https://w3id.org/linkml/
-  biolink: https://w3id.org/biolink/vocab/
   schema: http://schema.org/
-  PATO: http://purl.obolibrary.org/obo/PATO_
+  uberon: http://purl.obolibrary.org/obo/uberon/core#
 default_prefix: B2AI_TOPIC
 default_range: string
 
@@ -37,6 +39,7 @@ classes:
       - edam_id
       - mesh_id
       - ncit_id
+      - topic_involves_anatomy
 
   DataTopicContainer:
     description: >-
@@ -52,3 +55,13 @@ slots:
     inlined: true
     inlined_as_list: true
     multivalued: true
+
+  topic_involves_anatomy:
+    description: >-
+      A relationship between a DataTopic and an anatomical entity.
+    is_a: related_to
+    domain: DataTopic
+    range: AnatomicalEntity
+    multivalued: True
+    exact_mappings:
+      - RO:0004026