Fix compatibility with Cython 3.1 #1184
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| name: TestSuite | |
| on: [push, pull_request] | |
| jobs: | |
| get_python_versions: | |
| name: "Determine Python versions" | |
| runs-on: ubuntu-latest | |
| outputs: | |
| min-python: ${{ steps.nep29.outputs.min-python }} | |
| max-python: ${{ steps.nep29.outputs.max-python }} | |
| steps: | |
| - name: "calculate versions according to NEP29" | |
| id: nep29 | |
| uses: mstimberg/[email protected] | |
| with: | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| pre-commit: | |
| name: Run linters with pre-commit | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| persist-credentials: false | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.10' | |
| cache: 'pip' | |
| cache-dependency-path: .devcontainer/dev-requirements.txt | |
| - name: Install deps | |
| run: pip3 install -r .devcontainer/dev-requirements.txt | |
| - name: Run pre-commit hooks | |
| run: pre-commit run --all-files --show-diff-on-failure | |
| testing: | |
| needs: [get_python_versions, pre-commit] | |
| name: "Python ${{ matrix.python-version }} on ${{ matrix.os }} (standalone: ${{ matrix.standalone }}, 32bit: ${{ matrix.float_dtype_32 }})" | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-22.04, windows-2022, macOS-13, macOS-14] | |
| standalone: [false, true] | |
| float_dtype_32: [false, true] | |
| python-version: ["${{ needs.get_python_versions.outputs.max-python }}"] | |
| include: | |
| - os: ubuntu-22.04 | |
| standalone: false | |
| python-version: "${{ needs.get_python_versions.outputs.min-python }}" | |
| float_dtype_32: false | |
| - os: ubuntu-22.04 | |
| standalone: true | |
| python-version: "${{ needs.get_python_versions.outputs.min-python }}" | |
| float_dtype_32: false | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Checkout Repository | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| persist-credentials: false | |
| - name: Setup Conda and Python | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| auto-activate-base: false | |
| miniforge-version: latest | |
| activate-environment: 'test_env' | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install Brian2 and dependencies | |
| run: | | |
| conda install --quiet --yes pip gsl | |
| python -m pip install .[test] | |
| - name: Determine Cython cache dir | |
| id: cython-cache | |
| run: | | |
| CACHE_DIR=$(python -c 'import os; from Cython.Utils import get_cython_cache_dir; print(os.path.join(get_cython_cache_dir(), "brian_extensions"))') | |
| echo "Cython cache dir: $CACHE_DIR" | |
| echo "cachedir=$CACHE_DIR" >> "$GITHUB_OUTPUT" | |
| - name: restore Cython cache | |
| uses: actions/cache@v4 | |
| if: ${{ ! matrix.standalone }} | |
| with: | |
| key: cython-extensions-${{ matrix.os }}-${{ matrix.python-version }}-32bit-${{ matrix.float_dtype_32 }} | |
| path: ${{ steps.cython-cache.outputs.cachedir }} | |
| - name: Run Tests | |
| run: | | |
| cd $GITHUB_WORKSPACE/.. # move out of the workspace to avoid direct import | |
| python $GITHUB_WORKSPACE/$SCRIPT_NAME | |
| cp coverage.xml $GITHUB_WORKSPACE/ | |
| env: | |
| SCRIPT_NAME: dev/continuous-integration/run_test_suite.py | |
| SPHINX_DIR: ${{ github.workspace }}/docs_sphinx | |
| AGENT_OS: ${{runner.os}} | |
| STANDALONE: ${{ matrix.standalone }} | |
| FLOAT_DTYPE_32: ${{ matrix.float_dtype_32 }} | |
| - name: Send coverage to Coveralls (parallel) | |
| if: ${{ startsWith(matrix.os, 'ubuntu-') && matrix.python-version == needs.get_python_versions.outputs.max-python }} | |
| uses: coverallsapp/[email protected] | |
| with: | |
| parallel: true | |
| flag-name: run ${{ join(matrix.*, ' - ') }} | |
| coveralls: | |
| name: Indicate completion to coveralls.io | |
| needs: testing | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Close parallel build | |
| uses: coverallsapp/[email protected] | |
| with: | |
| parallel-finished: true | |
| test_doc_build: | |
| needs: get_python_versions | |
| name: Test building the documentation | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Checkout Repository | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| persist-credentials: false | |
| submodules: true | |
| - name: Setup Conda and Python | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| auto-activate-base: false | |
| miniforge-version: latest | |
| activate-environment: 'test_env' | |
| python-version: "${{ needs.get_python_versions.outputs.max-python }}" | |
| - name: Install dependencies | |
| run: pip install -r rtd-requirements.txt | |
| - name: Install brian2 | |
| run: pip install . | |
| - name: Build HTML documentation | |
| run: | | |
| cd docs_sphinx | |
| sphinx-build -b html . ../docs | |
| env: | |
| READTHEDOCS: True |