From aa5329247182655a5cb0d375b12faa6845cf693d Mon Sep 17 00:00:00 2001 From: stebo85 Date: Wed, 17 Jan 2024 21:06:22 +0000 Subject: [PATCH] deploy: 55143ae23017d783602cbe20d6f10598c7e887f1 --- 404.html | 4 ++-- admins/_print/index.html | 4 ++-- admins/admins/index.html | 4 ++-- admins/datascience/index.html | 4 ++-- admins/index.html | 4 ++-- admins/policies/index.html | 4 ++-- admins/resources/index.html | 4 ++-- admins/team/index.html | 4 ++-- admins/users/index.html | 4 ++-- docs/_print/index.html | 4 ++-- docs/docker/index.html | 4 ++-- docs/index.html | 4 ++-- docs/kubernetes/index.html | 4 ++-- docs/object_storage/index.html | 4 ++-- docs/request/index.html | 4 ++-- docs/tenancy_explorer/index.html | 4 ++-- index.html | 4 ++-- search/index.html | 4 ++-- tutorials/_print/index.html | 4 ++-- tutorials/gh_runner/index.html | 4 ++-- tutorials/hpc/index.html | 4 ++-- tutorials/index.html | 4 ++-- tutorials/neurodesk/index.html | 4 ++-- tutorials/notebooks/index.html | 4 ++-- tutorials/vm/index.html | 4 ++-- 25 files changed, 50 insertions(+), 50 deletions(-) diff --git a/404.html b/404.html index f4dd83f..a133ced 100644 --- a/404.html +++ b/404.html @@ -1,2 +1,2 @@ -404 Page not found | Brainhack cloud -

Not found

not found

Oops! This page doesn't exist. Try going back to our home page.

© 2023 Brainhack Cloud
Except where otherwise noted, content on this site is licensed under a CC BY 4.0 license.
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Not found

not found

Oops! This page doesn't exist. Try going back to our home page.

© 2024 Brainhack Cloud
Except where otherwise noted, content on this site is licensed under a CC BY 4.0 license.
\ No newline at end of file diff --git a/admins/_print/index.html b/admins/_print/index.html index 7820111..38df06d 100644 --- a/admins/_print/index.html +++ b/admins/_print/index.html @@ -1,4 +1,4 @@ -Admins | Brainhack cloud +Admins | Brainhack cloud
© 2023 Brainhack Cloud
Except where otherwise noted, content on this site is licensed under a CC BY 4.0 license.
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-> created as datascience-dynamic-group-policy in the root compartment

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Creating new admins

Creating new admins

Overview

To increase the security of our cloud tenancy an admin cannot create or remove other admins. This is the instruction for the admin-administrator to create new admin accounts:

Create a new admin

Admins need to use a “federated account” to login into the cloud instead of “local accounts”.

Go to Federation in Identity image

Click on OracleIdentityCloudService and then Create User

append _admin to the Username (firstname_lastname) of the new user and add the user to the Group OCI_Administrators

image

Warning: DO NOT ADD THE USER TO THE GROUP IDCS_Administrators - otherwise this admin will be able to manage other admin accounts.

You don’t have to assign any Roles to the user, so on the next screen click on Close.

The new admin will receive an email like this: image

and after activating the account everything is ready to go and the new admin needs to sign on via federated accounts Single Sign On: -image

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Last modified April 1, 2022: fix typos (f9a8737)
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© 2023 Brainhack Cloud
Except where otherwise noted, content on this site is licensed under a CC BY 4.0 license.
\ No newline at end of file +where dynamic-group represents the name of your dynamic group

-> created as datascience-dynamic-group-policy in the root compartment

Last modified April 1, 2022: fix typos (f9a8737)
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What is Oracle for Research? -“Oracle for Research supports academic, educational, and institutional researchers in all aspects of discovery. We’ve made it simple for them to host, store and analyze their data with our cloud infrastructure solutions. Our research customers are changing the world – and we’re proud to help them do it.”

License

CC BY License 4.0

Creating new users

Creating new users

Setting up policies

This is about Oracle cloud policies.

Resources

How resources work on the Oracle Cloud

Team

This is the team behind the scenes

Creating new admins

Creating new admins

Datascience setup

How to set up the datascience environments (only needs to be done once).

Last modified June 1, 2022: adding Oracle for Research description and HPC tutorial for GPUs (b7ba562)
\ No newline at end of file +“Oracle for Research supports academic, educational, and institutional researchers in all aspects of discovery. We’ve made it simple for them to host, store and analyze their data with our cloud infrastructure solutions. Our research customers are changing the world – and we’re proud to help them do it.”

License

CC BY License 4.0

Creating new users

Creating new users

Setting up policies

This is about Oracle cloud policies.

Resources

How resources work on the Oracle Cloud

Team

This is the team behind the scenes

Creating new admins

Creating new admins

Datascience setup

How to set up the datascience environments (only needs to be done once).

Last modified June 1, 2022: adding Oracle for Research description and HPC tutorial for GPUs (b7ba562)
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Policies for Object Storage Lifecycle management

To enable lifecycle management the local services need a policy to do this. I configured it for every possible region a user would choose:

Allow service objectstorage-eu-frankfurt-1 to manage object-family in compartment projects

Allow service objectstorage-ap-sydney-1 to manage object-family in compartment projects

Allow service objectstorage-ap-melbourne-1 to manage object-family in compartment projects

Allow service objectstorage-sa-saopaulo-1 to manage object-family in compartment projects

Allow service objectstorage-sa-vinhedo-1 to manage object-family in compartment projects

Allow service objectstorage-ca-montreal-1 to manage object-family in compartment projects

Allow service objectstorage-ca-toronto-1 to manage object-family in compartment projects

Allow service objectstorage-sa-santiago-1 to manage object-family in compartment projects

Allow service objectstorage-eu-marseille-1 to manage object-family in compartment projects

Allow service objectstorage-ap-hyderabad-1 to manage object-family in compartment projects

Allow service objectstorage-ap-mumbai-1 to manage object-family in compartment projects

Allow service objectstorage-il-jerusalem-1 to manage object-family in compartment projects

Allow service objectstorage-eu-milan-1 to manage object-family in compartment projects

Allow service objectstorage-ap-osaka-1 to manage object-family in compartment projects

Allow service objectstorage-ap-tokyo-1 to manage object-family in compartment projects

Allow service objectstorage-eu-amsterdam-1 to manage object-family in compartment projects

Allow service objectstorage-me-jeddah-1 to manage object-family in compartment projects

Allow service objectstorage-ap-singapore-1 to manage object-family in compartment projects

Allow service objectstorage-af-johannesburg-1 to manage object-family in compartment projects

Allow service objectstorage-ap-seoul-1 to manage object-family in compartment projects

Allow service objectstorage-ap-chuncheon-1 to manage object-family in compartment projects

Allow service objectstorage-eu-stockholm-1 to manage object-family in compartment projects

Allow service objectstorage-eu-zurich-1 to manage object-family in compartment projects

Allow service objectstorage-me-abudhabi-1 to manage object-family in compartment projects

Allow service objectstorage-me-dubai-1 to manage object-family in compartment projects

Allow service objectstorage-uk-london-1 to manage object-family in compartment projects

Allow service objectstorage-uk-cardiff-1 to manage object-family in compartment projects

Allow service objectstorage-us-ashburn-1 to manage object-family in compartment projects

Allow service objectstorage-us-phoenix-1 to manage object-family in compartment projects

Allow service objectstorage-us-sanjose-1 to manage object-family in compartment projects

Policies for HPC

allow service compute_management to use tag-namespace in tenancy

allow service compute_management to manage compute-management-family in tenancy

allow service compute_management to read app-catalog-listing in tenancy

Allow dynamic-group instance_principal to read app-catalog-listing in tenancy

Allow dynamic-group instance_principal to use tag-namespace in tenancy

Allow dynamic-group instance_principal to manage all-resources in compartment projects

Last modified April 3, 2022: line break (906008b)
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Resources

How resources work on the Oracle Cloud

By default, every tenancy has strict resource limits. These make sure that the right resources are available in the data centers where they are requested. An overview of which resources are available where can be found here: -https://www.oracle.com/cloud/data-regions/#northamerica

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Last modified April 1, 2022: fix typos (f9a8737)
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Team

This is the team behind the scenes

We applied for funding for this project with Oracle Cloud for Research and the project is funded with $230,000.00 AUD from the 29th of January 2022 until 28th of -January, 2024.

For help and support, please join the mattermost channel:

If you would like to join the admin team, please join this mattermost channel:

The team behind the scenes:

Last modified June 7, 2022: chat channels (2c2a3e7)
\ No newline at end of file +January, 2024.

For help and support, please join the mattermost channel:

If you would like to join the admin team, please join this mattermost channel:

The team behind the scenes:

Last modified June 7, 2022: chat channels (2c2a3e7)
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image

Last modified July 15, 2022: added compartment name (9a4d636)
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© 2023 Brainhack Cloud
Except where otherwise noted, content on this site is licensed under a CC BY 4.0 license.
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But be aware that Kubernetes can create resources via API calls, which is great, but it also means that these additionally created resources (like load balancers or storage volumes) will NOT be cleaned up automatically and need to cleaned up manually!

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Hit CTRL-b and then d to detach from the tmux session (re-attaching is possible using tmux attach-session -t neurodesk).

and this is how easy it is to run a container on the cloud :)

if you connect to your cloud instance using a port-forwarding ssh -L 8080:127.0.0.1:8080 opc@xxx.xx.xx.xx then you could now use Neurodesktop via visiting http://localhost:8080/#/?username=user&password=password in your local browser. When done, stop the container with CTRL-C and run sudo docker rm neurodesktop to cleanup.

Last modified April 3, 2022: added tmux to keep session running (bb3af8b)
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What is Oracle for Research? -“Oracle for Research supports academic, educational, and institutional researchers in all aspects of discovery. We’ve made it simple for them to host, store and analyze their data with our cloud infrastructure solutions. Our research customers are changing the world – and we’re proud to help them do it.”

License

CC BY License 4.0

Requesting Cloud Resources

Requesting Cloud Resources

Object Storage

Object Storage

Tenancy Explorer

Tenancy Explorer

Installing and Using Docker

Installing and using Docker

Kubernetes

A description how to get started with Kubernetes on Oracle Cloud

Last modified June 1, 2022: adding Oracle for Research description and HPC tutorial for GPUs (b7ba562)
\ No newline at end of file +“Oracle for Research supports academic, educational, and institutional researchers in all aspects of discovery. We’ve made it simple for them to host, store and analyze their data with our cloud infrastructure solutions. Our research customers are changing the world – and we’re proud to help them do it.”

License

CC BY License 4.0

Requesting Cloud Resources

Requesting Cloud Resources

Object Storage

Object Storage

Tenancy Explorer

Tenancy Explorer

Installing and Using Docker

Installing and using Docker

Kubernetes

A description how to get started with Kubernetes on Oracle Cloud

Last modified June 1, 2022: adding Oracle for Research description and HPC tutorial for GPUs (b7ba562)
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But be aware that Kubernetes can create resources via API calls, which is great, but it also means that these additionally created resources (like load balancers or storage volumes) will NOT be cleaned up automatically and need to cleaned up manually!

Last modified April 21, 2022: Finalized Kubernetes instructions (8819d72)
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Last modified September 5, 2022: added how to mount s3 bucket (e6e9b58)
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Happy computing :)

Last modified April 1, 2022: fix typos (f9a8737)
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Tenancy Explorer

Tenancy Explorer

Overview

The Tenancy Explorer is very useful to see what resources are currently being used in your project.

It’s in Governance -> Tenancy Explorer

image

You can use this to clean up resources that are no longer required.

Hint: The network setup creates a lot of things and to cleanup it’s easiest to go to Virtual Cloud Networks, select the VCN you don’t need anymore and click -Terminate - this will go out and remove everything correctly:

image

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image

Last modified March 9, 2022: finish prettifying (dbbb815)
\ No newline at end of file diff --git a/index.html b/index.html index fd26b45..f853975 100644 --- a/index.html +++ b/index.html @@ -1,4 +1,4 @@ -Brainhack cloud +Brainhack cloud

Get started with Brainhack cloud

Apply for Cloud Resources Tutorials Sign in to cloud

brainhack logo

What is Brainhack Cloud?

A team of brainhack volunteers applied for Oracle Cloud Credits to support open source projects in and around brainhack with powerful cloud resources

Read more …

Discussions

Ask questions or raise any issues you have

Read more …

What is Oracle for Research?

Oracle for Research supports academic, educational, and institutional researchers in all aspects of discovery. We've made it simple for them to host, store and analyze their data with our cloud infrastructure solutions. Our research customers are changing the world - and we're proud to help them do it.
-

Read more …

© 2023 Brainhack Cloud
Except where otherwise noted, content on this site is licensed under a CC BY 4.0 license.
\ No newline at end of file +

Read more …

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Search Results

© 2023 Brainhack Cloud
Except where otherwise noted, content on this site is licensed under a CC BY 4.0 license.
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Search Results

© 2024 Brainhack Cloud
Except where otherwise noted, content on this site is licensed under a CC BY 4.0 license.
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© 2023 Brainhack Cloud
Except where otherwise noted, content on this site is licensed under a CC BY 4.0 license.
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Then follow the above instructions, but leave Use cluser network activated and RDMA options enabled.

5 - Neurodesk

Neurodesk

Overview

This section describes how to setup a Neurodesk instance on the cloud. Neurodesk provides a containerised data analysis environment to facilitate reproducible analysis of neuroimaging data. Software included can be found here: https://www.neurodesk.org/applications/

Create a new VM

See our VM tutorial

Configure Docker/Podman

See our Docker documentation

Follow the official Neurodesk instructions for running the latest container

https://www.neurodesk.org/docs/neurodesktop/getting-started/cloud/

\ No newline at end of file diff --git a/tutorials/gh_runner/index.html b/tutorials/gh_runner/index.html index a35f921..1b71756 100644 --- a/tutorials/gh_runner/index.html +++ b/tutorials/gh_runner/index.html @@ -1,4 +1,4 @@ -Github action runner | Brainhack cloud +Github action runner | Brainhack cloud Last modified November 8, 2022: Update gh_runner.md (6034c48) \ No newline at end of file +

and you need to change the “runs-on” inside your github action from “self-hosted” to “[self-hosted, oracle]”

Last modified November 8, 2022: Update gh_runner.md (6034c48)
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Then follow the above instructions, but leave Use cluser network activated and RDMA options enabled.

Last modified August 10, 2023: add new tutorial (a690f9c)
\ No newline at end of file diff --git a/tutorials/index.html b/tutorials/index.html index 6904463..848e59f 100644 --- a/tutorials/index.html +++ b/tutorials/index.html @@ -1,4 +1,4 @@ -Tutorials | Brainhack cloud +Tutorials | Brainhack cloud

What is Oracle for Research? -“Oracle for Research supports academic, educational, and institutional researchers in all aspects of discovery. We’ve made it simple for them to host, store and analyze their data with our cloud infrastructure solutions. Our research customers are changing the world – and we’re proud to help them do it.”

License

CC BY License 4.0

Virtual machines

Virtual Machines

Notebooks

Notebook service

Github action runner

Github action runner

HPC

High Performance Computing

Neurodesk

Neurodesk

Last modified June 1, 2022: adding Oracle for Research description and HPC tutorial for GPUs (b7ba562)
\ No newline at end of file +“Oracle for Research supports academic, educational, and institutional researchers in all aspects of discovery. We’ve made it simple for them to host, store and analyze their data with our cloud infrastructure solutions. Our research customers are changing the world – and we’re proud to help them do it.”

License

CC BY License 4.0

Virtual machines

Virtual Machines

Notebooks

Notebook service

Github action runner

Github action runner

HPC

High Performance Computing

Neurodesk

Neurodesk

Last modified June 1, 2022: adding Oracle for Research description and HPC tutorial for GPUs (b7ba562)
\ No newline at end of file diff --git a/tutorials/neurodesk/index.html b/tutorials/neurodesk/index.html index 63ac885..ad2fd2c 100644 --- a/tutorials/neurodesk/index.html +++ b/tutorials/neurodesk/index.html @@ -1,4 +1,4 @@ -Neurodesk | Brainhack cloud +Neurodesk | Brainhack cloud Create child page Create documentation issue Create project issue - Print entire section

Neurodesk

Neurodesk

Overview

This section describes how to setup a Neurodesk instance on the cloud. Neurodesk provides a containerised data analysis environment to facilitate reproducible analysis of neuroimaging data. Software included can be found here: https://www.neurodesk.org/applications/

Create a new VM

See our VM tutorial

Configure Docker/Podman

See our Docker documentation

Follow the official Neurodesk instructions for running the latest container

https://www.neurodesk.org/docs/neurodesktop/getting-started/cloud/

Last modified July 27, 2022: add more details about Neurodesk (4503ac2)
\ No newline at end of file + Print entire section

Neurodesk

Neurodesk

Overview

This section describes how to setup a Neurodesk instance on the cloud. Neurodesk provides a containerised data analysis environment to facilitate reproducible analysis of neuroimaging data. Software included can be found here: https://www.neurodesk.org/applications/

Create a new VM

See our VM tutorial

Configure Docker/Podman

See our Docker documentation

Follow the official Neurodesk instructions for running the latest container

https://www.neurodesk.org/docs/neurodesktop/getting-started/cloud/

Last modified July 27, 2022: add more details about Neurodesk (4503ac2)
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Last modified June 18, 2022: Update notebooks.md (680d480)
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this installation will give you all the necessary packages to start with building your own environment and project.

Last modified September 23, 2022: Add Miniconda instructions (870d91c)
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