pyproject.toml

[project]
name = "imio"
description = "Loading and saving of image data."
readme = "README.md"
authors = [
    { name = "Charly Rousseau, Adam Tyson", email = "code@adamltyson.com" },
]
classifiers = [
    "Development Status :: 3 - Alpha",
    "Intended Audience :: Developers",
    "Intended Audience :: Science/Research",
    "Operating System :: OS Independent",
    "Programming Language :: Python",
    "Programming Language :: Python :: 3.8",
    "Programming Language :: Python :: 3.9",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
]
requires-python = ">=3.8"
dependencies = [
    "brainglobe-utils[slurmio]",
    "natsort",
    "nibabel",
    "nibabel >= 2.1.0",
    "numpy",
    "psutil",
    "pyarrow",
    "pynrrd",
    "scikit-image",
    "tifffile",
    "tqdm",
]
dynamic = ['version']

[project.urls]
Homepage = "https://github.com/brainglobe/imio"

[project.optional-dependencies]
dev = ["black", "pre-commit", "pytest", "pytest-cov"]

[build-system]
requires = ["setuptools>=45", "wheel", "setuptools_scm[toml]>=6.2"]
build-backend = "setuptools.build_meta"

[tool.setuptools]
include-package-data = true

[tool.setuptools.packages.find]
include = ["imio*"]

[tool.setuptools_scm]

[tool.pytest.ini_options]
addopts = "--cov=imio"
filterwarnings = [
    "error",
    # Emitted by scikit-image on import, see https://github.com/scikit-image/scikit-image/issues/6663
    # This filter should be removed when scikit-image 0.20 is released
    "ignore:`np.bool8` is a deprecated alias for `np.bool_`",
    # Emitted by nptyping, see https://github.com/ramonhagenaars/nptyping/issues/102
    # for upstream issue
    "ignore:`np.object0` is a deprecated alias for ``np.object0`",
    "ignore:`np.int0` is a deprecated alias for `np.intp`",
    "ignore:`np.uint0` is a deprecated alias for `np.uintp`",
    "ignore:`np.void0` is a deprecated alias for `np.void`",
    "ignore:`np.bytes0` is a deprecated alias for `np.bytes_`",
    "ignore:`np.str0` is a deprecated alias for `np.str_`",
]

[tool.black]
target-version = ['py38', 'py39', 'py310']
skip-string-normalization = false
line-length = 79

[tool.ruff]
line-length = 79
exclude = ["__init__.py", "build", ".eggs"]
select = ["I", "E", "F"]
fix = true

[tool.tox]
legacy_tox_ini = """
[tox]
envlist = py{38,39,310,311}

[gh-actions]
python =
    3.8: py38
    3.9: py39
    3.10: py310
    3.11: py311

[testenv]
extras =
    dev
commands =
    pytest -v --color=yes --cov=imio --cov-report=xml -W ignore::DeprecationWarning
"""