README.md

This package has moved!

imio has been merged into brainglobe-utils and will no longer be provided standalone. If you want to continue using this package's functionality, we recommend you install brainglobe-utils and the corresponding submodule.

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imio

Loading and saving of image data.

About

The aim of imio is to be a lightweight image loading library for the file types supported by cellfinder, and brainreg.

Supports loading of:

• Tiff stack +
• Tiff series (from a directory, a text file or a list of file paths). *+
• nrrd
• nifti (.nii & .nii.gz)

* Supports loading in parallel for speed

+ Suports scaling on loading. E.g. downsampling to load images bigger than the available RAM

Supports saving of:

• Tiff stack
• Tiff series
• nifti

To install

pip install imio

Contributing

Contributions to imio are more than welcome. Please see the developers guide.