From df6817b0bc2b46234942b9aabefd55ccfcc9d87e Mon Sep 17 00:00:00 2001 From: alessandrofelder Date: Mon, 7 Oct 2024 11:50:05 +0100 Subject: [PATCH] last min tweaks --- index.qmd | 4 ++-- slides/installation.qmd | 15 +++++++-------- 2 files changed, 9 insertions(+), 10 deletions(-) diff --git a/index.qmd b/index.qmd index 8e57afb..011ea23 100644 --- a/index.qmd +++ b/index.qmd @@ -41,8 +41,8 @@ format: ## Schedule{.smaller} ::: {.incremental} -- Installing BrainGlobe (30 mins) -- Introduction to Image analysis with Napari +- Installing BrainGlobe and Napari (30 mins) +- Introduction to Image analysis with Napari (60 mins) - Introduction to BrainGlobe (30 mins) - Registering whole brain microscopy images with brainreg (30 mins) - Segmenting structures in whole brain microscopy images with brainglobe-segmentation (30 mins) diff --git a/slides/installation.qmd b/slides/installation.qmd index 0d910a3..baf2f97 100644 --- a/slides/installation.qmd +++ b/slides/installation.qmd @@ -1,18 +1,17 @@ ## Install napari and BrainGlobe -#### Silicon mac users -```bash -pip install brainglobe -conda install niftyreg -``` - - -#### All other users +### Everyone ```{.bash} +conda create -n brainglobe-env python=3.12 +conda activate brainglobe-env pip install brainglobe ``` +#### Silicon mac users (additionally) +```bash +conda install niftyreg +``` ## Double-check installation {.smaller} :::: {.columns}